Mercurial > repos > rliterman > csp2
view CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/lib/python3.8/site-packages/pysam/libctabixproxies.pxd @ 69:33d812a61356
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
author | jpayne |
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date | Tue, 18 Mar 2025 17:55:14 -0400 |
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# cython: language_level=3 from libc.stdint cimport uint8_t, int32_t, uint32_t, int64_t, uint64_t cdef class TupleProxy: cdef: char * data char ** fields int nfields int nbytes int offset bint is_modified cdef encoding cpdef int getMaxFields(self) cpdef int getMinFields(self) # cdef char * _getindex(self, int idx) cdef take(self, char * buffer, size_t nbytes) cdef present(self, char * buffer, size_t nbytes) cdef copy(self, char * buffer, size_t nbytes, bint reset=*) cdef update(self, char * buffer, size_t nbytes) cdef class TupleProxyIterator: cdef TupleProxy proxy cdef int index cdef class NamedTupleProxy(TupleProxy): pass cdef class GTFProxy(NamedTupleProxy): cdef object attribute_dict cpdef int getMaxFields(self) cpdef int getMinFields(self) cdef class GFF3Proxy(GTFProxy): pass cdef class BedProxy(NamedTupleProxy): cdef: char * contig uint32_t start uint32_t end int bedfields cpdef int getMaxFields(self) cpdef int getMinFields(self) cdef update(self, char * buffer, size_t nbytes) cdef class VCFProxy(NamedTupleProxy) : cdef: char * contig uint32_t pos cdef update(self, char * buffer, size_t nbytes)