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view CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/bbmap-39.01-1/diskbench.sh @ 69:33d812a61356
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
author | jpayne |
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date | Tue, 18 Mar 2025 17:55:14 -0400 |
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#!/bin/bash usage(){ echo " Written by Brian Bushnell Last modified March 5, 2018 Description: Benchmarks a disk with multithreaded I/O. Usage: diskbench.sh path=<path> data=<8g> passes=<2> threads=<> Parameters: path= Location to read and write. data=8g Number of bytes to process per pass. threads= Number of threads to use. By default, all logical threads. In RW mode the number of active threads is doubled. mode=rw I/O mode: r: Test read speed only. w: Test write speed only. rw: Test read and write speed simultaneously. Processing parameters: None yet! Java Parameters: -Xmx This will set Java's memory usage, overriding autodetection. -Xmx20g will specify 20 gigs of RAM, and -Xmx200m will specify 200 megs. The max is typically 85% of physical memory. -eoom This flag will cause the process to exit if an out-of-memory exception occurs. Requires Java 8u92+. -da Disable assertions. Please contact Brian Bushnell at bbushnell@lbl.gov if you encounter any problems. " } #This block allows symlinked shellscripts to correctly set classpath. pushd . > /dev/null DIR="${BASH_SOURCE[0]}" while [ -h "$DIR" ]; do cd "$(dirname "$DIR")" DIR="$(readlink "$(basename "$DIR")")" done cd "$(dirname "$DIR")" DIR="$(pwd)/" popd > /dev/null #DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )/" CP="$DIR""current/" z="-Xmx400m" z2="-Xms400m" set=0 if [ -z "$1" ] || [[ $1 == -h ]] || [[ $1 == --help ]]; then usage exit fi calcXmx () { source "$DIR""/calcmem.sh" setEnvironment parseXmx "$@" } calcXmx "$@" diskbench() { local CMD="java $EA $EOOM $z $z2 -cp $CP fun.DiskBench $@" echo $CMD >&2 eval $CMD } diskbench "$@"