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view CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/bbmap-39.01-1/testfilesystem.sh @ 69:33d812a61356
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
author | jpayne |
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date | Tue, 18 Mar 2025 17:55:14 -0400 |
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#!/bin/bash usage(){ echo " Written by Brian Bushnell Last modified December 11, 2017 Description: Logs filesystem performance by creating, deleting, and copying files. Usage: testfilesystem.sh <in> <out> <log> <size> <ways> <interval in seconds> 'in' should contain the # symbol if ways>1. Please contact Brian Bushnell at bbushnell@lbl.gov if you encounter any problems. " } #This block allows symlinked shellscripts to correctly set classpath. pushd . > /dev/null DIR="${BASH_SOURCE[0]}" while [ -h "$DIR" ]; do cd "$(dirname "$DIR")" DIR="$(readlink "$(basename "$DIR")")" done cd "$(dirname "$DIR")" DIR="$(pwd)/" popd > /dev/null #DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )/" CP="$DIR""current/" z="-Xmx50m" set=0 if [ -z "$1" ] || [[ $1 == -h ]] || [[ $1 == --help ]]; then usage exit fi calcXmx () { source "$DIR""/calcmem.sh" setEnvironment parseXmx "$@" } calcXmx "$@" function testfs() { local CMD="java $EA $EOOM $z -cp $CP jgi.TestFilesystem $@" echo $CMD >&2 eval $CMD } testfs "$@"