jpayne@69: // Copyright © 2015, Battelle National Biodefense Institute (BNBI);
jpayne@69: // all rights reserved. Authored by: Brian Ondov, Todd Treangen,
jpayne@69: // Sergey Koren, and Adam Phillippy
jpayne@69: //
jpayne@69: // See the LICENSE.txt file included with this software for license information.
jpayne@69: 
jpayne@69: #ifndef sketchParameterSetup_h
jpayne@69: #define sketchParameterSetup_h
jpayne@69: 
jpayne@69: #include "Command.h"
jpayne@69: #include "Sketch.h"
jpayne@69: 
jpayne@69: namespace mash {
jpayne@69: 
jpayne@69: int sketchParameterSetup(Sketch::Parameters & parameters, const Command & command);
jpayne@69: void warnKmerSize(const Sketch::Parameters & parameters, const Command & command, uint64_t lengthMax, const std::string & lengthMaxName, double randomChance, int kMin, int warningCount);
jpayne@69: 
jpayne@69: } // namespace mash
jpayne@69: 
jpayne@69: #endif