jpayne@69: Many people have contributed to pysam. The list of GitHub contributors jpayne@69: is the best place to get a full list of authors and their contributions. jpayne@69: The list and summary below is a out-of-date and represents the earlier jpayne@69: stages of the project. jpayne@69: jpayne@69: List of contributors: jpayne@69: jpayne@69: Andreas Heger, Tildon Grant Belgard, Florian Finkernagel, jpayne@69: Leo Goodstadt, Martin Goodson all contributed code to pysam. jpayne@69: jpayne@69: John Marshall has been looking after pysam and its community for jpayne@69: several years, as well as making many code contributions and improving jpayne@69: the engineering of pysam. jpayne@69: jpayne@69: Kevin B. Jacobs implemented a Cython wrapper for the VCF/BCF jpayne@69: reader/writer in htslib. jpayne@69: jpayne@69: Gerton Lunter provided a validating VCF parser. jpayne@69: jpayne@69: Marcel Martin implemented Python 3 compatibility and added type hints. jpayne@69: Ben Schiller contributed a Windows compatible clone. jpayne@69: jpayne@69: The sources in the directory samtools are from the samtools project: jpayne@69: http://samtools.sourceforge.net/. All of these are available under the jpayne@69: MIT licence. The attributions for this code are as follows: jpayne@69: jpayne@69: Heng Li from the Sanger Institute wrote most of the initial source code jpayne@69: of SAMtools and various converters. jpayne@69: jpayne@69: Bob Handsaker from the Broad Institute is a major contributor to the jpayne@69: SAM/BAM specification. He designed and implemented the BGZF format, the jpayne@69: underlying indexable compression format for the BAM format. BGZF does jpayne@69: not support arithmetic between file offsets.