jpayne@69: Metadata-Version: 2.1 jpayne@69: Name: pysam jpayne@69: Version: 0.23.0 jpayne@69: Summary: Package for reading, manipulating, and writing genomic data jpayne@69: Home-page: https://github.com/pysam-developers/pysam jpayne@69: Author: Andreas Heger jpayne@69: Author-email: Andreas Heger jpayne@69: License: MIT License jpayne@69: Project-URL: Documentation, https://pysam.readthedocs.io/ jpayne@69: Project-URL: Release notes, https://pysam.readthedocs.io/en/stable/release.html jpayne@69: Platform: POSIX jpayne@69: Platform: UNIX jpayne@69: Platform: MacOS jpayne@69: Classifier: Development Status :: 4 - Beta jpayne@69: Classifier: Intended Audience :: Science/Research jpayne@69: Classifier: Intended Audience :: Developers jpayne@69: Classifier: License :: OSI Approved jpayne@69: Classifier: Programming Language :: Python jpayne@69: Classifier: Topic :: Software Development jpayne@69: Classifier: Topic :: Scientific/Engineering jpayne@69: Classifier: Operating System :: POSIX jpayne@69: Classifier: Operating System :: Unix jpayne@69: Classifier: Operating System :: MacOS jpayne@69: Requires-Python: >=3.6 jpayne@69: Description-Content-Type: text/x-rst jpayne@69: License-File: COPYING jpayne@69: License-File: AUTHORS jpayne@69: jpayne@69: pysam --- a Python package for reading, manipulating, and writing jpayne@69: genomic data sets. jpayne@69: jpayne@69: pysam is a lightweight wrapper of the HTSlib API and provides facilities jpayne@69: to read and write SAM/BAM/CRAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files jpayne@69: as well as access to the command-line functionality of samtools and bcftools. jpayne@69: The module supports compression and random access through indexing. jpayne@69: jpayne@69: This module provides a low-level wrapper around HTSlib's C API using Cython jpayne@69: and a high-level API for convenient access to the data within standard genomic jpayne@69: file formats.