jpayne@69: /* Generated by Cython 3.0.11 */ jpayne@69: jpayne@69: /* BEGIN: Cython Metadata jpayne@69: { jpayne@69: "distutils": { jpayne@69: "define_macros": [ jpayne@69: [ jpayne@69: "BUILDING_WHEEL", jpayne@69: null jpayne@69: ] jpayne@69: ], jpayne@69: "depends": [ jpayne@69: "/project/htslib/htslib/bgzf.h", jpayne@69: "/project/htslib/htslib/cram.h", jpayne@69: "/project/htslib/htslib/faidx.h", jpayne@69: "/project/htslib/htslib/hfile.h", jpayne@69: "/project/htslib/htslib/hts.h", jpayne@69: "/project/htslib/htslib/kstring.h", jpayne@69: "/project/htslib/htslib/sam.h", jpayne@69: "/project/htslib/htslib/tbx.h", jpayne@69: "/project/htslib/htslib/vcf.h", jpayne@69: "/project/htslib/htslib/vcfutils.h", jpayne@69: "/project/pysam/htslib_util.h", jpayne@69: "/project/pysam/pysam_stream.h" jpayne@69: ], jpayne@69: "extra_compile_args": [ jpayne@69: "-Wno-unused", jpayne@69: "-Wno-strict-prototypes", jpayne@69: "-Wno-sign-compare", jpayne@69: "-Wno-error=declaration-after-statement" jpayne@69: ], jpayne@69: "extra_link_args": [ jpayne@69: "-Wl,-rpath,$ORIGIN" jpayne@69: ], jpayne@69: "include_dirs": [ jpayne@69: "pysam", jpayne@69: "/project/pysam", jpayne@69: "/project/htslib", jpayne@69: "/project/samtools", jpayne@69: "/project/samtools/lz4", jpayne@69: "/project/bcftools", jpayne@69: "/project" jpayne@69: ], jpayne@69: "language": "c", jpayne@69: "libraries": [ jpayne@69: "z", jpayne@69: "lzma", jpayne@69: "bz2", jpayne@69: "z", jpayne@69: "m", jpayne@69: "curl", jpayne@69: "crypto", jpayne@69: "chtslib.cpython-37m-x86_64-linux-gnu", jpayne@69: "cutils.cpython-37m-x86_64-linux-gnu" jpayne@69: ], jpayne@69: "library_dirs": [ jpayne@69: "/project/pysam", jpayne@69: "/project", jpayne@69: "build/lib.linux-x86_64-cpython-37/pysam", jpayne@69: "build/lib.linux-x86_64-cpython-37/pysam", jpayne@69: "build/lib.linux-x86_64-cpython-37/pysam", jpayne@69: "build/lib.linux-x86_64-cpython-37/pysam", jpayne@69: "build/lib.linux-x86_64-cpython-37/pysam", jpayne@69: "build/lib.linux-x86_64-cpython-37/pysam" jpayne@69: ], jpayne@69: "name": "pysam.libcsamfile", jpayne@69: "sources": [ jpayne@69: "pysam/libcsamfile.pyx" jpayne@69: ] jpayne@69: }, jpayne@69: "module_name": "pysam.libcsamfile" jpayne@69: } jpayne@69: END: Cython Metadata */ jpayne@69: jpayne@69: #ifndef PY_SSIZE_T_CLEAN jpayne@69: #define PY_SSIZE_T_CLEAN jpayne@69: #endif /* PY_SSIZE_T_CLEAN */ jpayne@69: #if defined(CYTHON_LIMITED_API) && 0 jpayne@69: #ifndef Py_LIMITED_API jpayne@69: #if CYTHON_LIMITED_API+0 > 0x03030000 jpayne@69: #define Py_LIMITED_API CYTHON_LIMITED_API jpayne@69: #else jpayne@69: #define Py_LIMITED_API 0x03030000 jpayne@69: #endif jpayne@69: #endif jpayne@69: #endif jpayne@69: jpayne@69: #include "Python.h" jpayne@69: jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: #define __Pyx_PyFloat_FromString(obj) PyFloat_FromString(obj) jpayne@69: #else jpayne@69: #define __Pyx_PyFloat_FromString(obj) PyFloat_FromString(obj, NULL) jpayne@69: #endif jpayne@69: jpayne@69: jpayne@69: #if PY_MAJOR_VERSION <= 2 jpayne@69: #define PyDict_GetItemWithError _PyDict_GetItemWithError jpayne@69: #endif jpayne@69: jpayne@69: jpayne@69: #if (PY_VERSION_HEX < 0x030700b1 || (CYTHON_COMPILING_IN_PYPY && PYPY_VERSION_NUM < 0x07030600)) && !defined(PyContextVar_Get) jpayne@69: #define PyContextVar_Get(var, d, v) ((d) ? ((void)(var), Py_INCREF(d), (v)[0] = (d), 0) : ((v)[0] = NULL, 0) ) jpayne@69: #endif jpayne@69: jpayne@69: #ifndef Py_PYTHON_H jpayne@69: #error Python headers needed to compile C extensions, please install development version of Python. jpayne@69: #elif PY_VERSION_HEX < 0x02070000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000) jpayne@69: #error Cython requires Python 2.7+ or Python 3.3+. jpayne@69: #else jpayne@69: #if defined(CYTHON_LIMITED_API) && CYTHON_LIMITED_API jpayne@69: #define __PYX_EXTRA_ABI_MODULE_NAME "limited" jpayne@69: #else jpayne@69: #define __PYX_EXTRA_ABI_MODULE_NAME "" jpayne@69: #endif jpayne@69: #define CYTHON_ABI "3_0_11" __PYX_EXTRA_ABI_MODULE_NAME jpayne@69: #define __PYX_ABI_MODULE_NAME "_cython_" CYTHON_ABI jpayne@69: #define __PYX_TYPE_MODULE_PREFIX __PYX_ABI_MODULE_NAME "." jpayne@69: #define CYTHON_HEX_VERSION 0x03000BF0 jpayne@69: #define CYTHON_FUTURE_DIVISION 1 jpayne@69: #include jpayne@69: #ifndef offsetof jpayne@69: #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) jpayne@69: #endif jpayne@69: #if !defined(_WIN32) && !defined(WIN32) && !defined(MS_WINDOWS) jpayne@69: #ifndef __stdcall jpayne@69: #define __stdcall jpayne@69: #endif jpayne@69: #ifndef __cdecl jpayne@69: #define __cdecl jpayne@69: #endif jpayne@69: #ifndef __fastcall jpayne@69: #define __fastcall jpayne@69: #endif jpayne@69: #endif jpayne@69: #ifndef DL_IMPORT jpayne@69: #define DL_IMPORT(t) t jpayne@69: #endif jpayne@69: #ifndef DL_EXPORT jpayne@69: #define DL_EXPORT(t) t jpayne@69: #endif jpayne@69: #define __PYX_COMMA , jpayne@69: #ifndef HAVE_LONG_LONG jpayne@69: #define HAVE_LONG_LONG jpayne@69: #endif jpayne@69: #ifndef PY_LONG_LONG jpayne@69: #define PY_LONG_LONG LONG_LONG jpayne@69: #endif jpayne@69: #ifndef Py_HUGE_VAL jpayne@69: #define Py_HUGE_VAL HUGE_VAL jpayne@69: #endif jpayne@69: #define __PYX_LIMITED_VERSION_HEX PY_VERSION_HEX jpayne@69: #if defined(GRAALVM_PYTHON) jpayne@69: /* For very preliminary testing purposes. Most variables are set the same as PyPy. jpayne@69: The existence of this section does not imply that anything works or is even tested */ jpayne@69: #define CYTHON_COMPILING_IN_PYPY 0 jpayne@69: #define CYTHON_COMPILING_IN_CPYTHON 0 jpayne@69: #define CYTHON_COMPILING_IN_LIMITED_API 0 jpayne@69: #define CYTHON_COMPILING_IN_GRAAL 1 jpayne@69: #define CYTHON_COMPILING_IN_NOGIL 0 jpayne@69: #undef CYTHON_USE_TYPE_SLOTS jpayne@69: #define CYTHON_USE_TYPE_SLOTS 0 jpayne@69: #undef CYTHON_USE_TYPE_SPECS jpayne@69: #define CYTHON_USE_TYPE_SPECS 0 jpayne@69: #undef CYTHON_USE_PYTYPE_LOOKUP jpayne@69: #define CYTHON_USE_PYTYPE_LOOKUP 0 jpayne@69: #if PY_VERSION_HEX < 0x03050000 jpayne@69: #undef CYTHON_USE_ASYNC_SLOTS jpayne@69: #define CYTHON_USE_ASYNC_SLOTS 0 jpayne@69: #elif !defined(CYTHON_USE_ASYNC_SLOTS) jpayne@69: #define CYTHON_USE_ASYNC_SLOTS 1 jpayne@69: #endif jpayne@69: #undef CYTHON_USE_PYLIST_INTERNALS jpayne@69: #define CYTHON_USE_PYLIST_INTERNALS 0 jpayne@69: #undef CYTHON_USE_UNICODE_INTERNALS jpayne@69: #define CYTHON_USE_UNICODE_INTERNALS 0 jpayne@69: #undef CYTHON_USE_UNICODE_WRITER jpayne@69: #define CYTHON_USE_UNICODE_WRITER 0 jpayne@69: #undef CYTHON_USE_PYLONG_INTERNALS jpayne@69: #define CYTHON_USE_PYLONG_INTERNALS 0 jpayne@69: #undef CYTHON_AVOID_BORROWED_REFS jpayne@69: #define CYTHON_AVOID_BORROWED_REFS 1 jpayne@69: #undef CYTHON_ASSUME_SAFE_MACROS jpayne@69: #define CYTHON_ASSUME_SAFE_MACROS 0 jpayne@69: #undef CYTHON_UNPACK_METHODS jpayne@69: #define CYTHON_UNPACK_METHODS 0 jpayne@69: #undef CYTHON_FAST_THREAD_STATE jpayne@69: #define CYTHON_FAST_THREAD_STATE 0 jpayne@69: #undef CYTHON_FAST_GIL jpayne@69: #define CYTHON_FAST_GIL 0 jpayne@69: #undef CYTHON_METH_FASTCALL jpayne@69: #define CYTHON_METH_FASTCALL 0 jpayne@69: #undef CYTHON_FAST_PYCALL jpayne@69: #define CYTHON_FAST_PYCALL 0 jpayne@69: #ifndef CYTHON_PEP487_INIT_SUBCLASS jpayne@69: #define CYTHON_PEP487_INIT_SUBCLASS (PY_MAJOR_VERSION >= 3) jpayne@69: #endif jpayne@69: #undef CYTHON_PEP489_MULTI_PHASE_INIT jpayne@69: #define CYTHON_PEP489_MULTI_PHASE_INIT 1 jpayne@69: #undef CYTHON_USE_MODULE_STATE jpayne@69: #define CYTHON_USE_MODULE_STATE 0 jpayne@69: #undef CYTHON_USE_TP_FINALIZE jpayne@69: #define CYTHON_USE_TP_FINALIZE 0 jpayne@69: #undef CYTHON_USE_DICT_VERSIONS jpayne@69: #define CYTHON_USE_DICT_VERSIONS 0 jpayne@69: #undef CYTHON_USE_EXC_INFO_STACK jpayne@69: #define CYTHON_USE_EXC_INFO_STACK 0 jpayne@69: #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC jpayne@69: #define CYTHON_UPDATE_DESCRIPTOR_DOC 0 jpayne@69: #endif jpayne@69: #undef CYTHON_USE_FREELISTS jpayne@69: #define CYTHON_USE_FREELISTS 0 jpayne@69: #elif defined(PYPY_VERSION) jpayne@69: #define CYTHON_COMPILING_IN_PYPY 1 jpayne@69: #define CYTHON_COMPILING_IN_CPYTHON 0 jpayne@69: #define CYTHON_COMPILING_IN_LIMITED_API 0 jpayne@69: #define CYTHON_COMPILING_IN_GRAAL 0 jpayne@69: #define CYTHON_COMPILING_IN_NOGIL 0 jpayne@69: #undef CYTHON_USE_TYPE_SLOTS jpayne@69: #define CYTHON_USE_TYPE_SLOTS 0 jpayne@69: #ifndef CYTHON_USE_TYPE_SPECS jpayne@69: #define CYTHON_USE_TYPE_SPECS 0 jpayne@69: #endif jpayne@69: #undef CYTHON_USE_PYTYPE_LOOKUP jpayne@69: #define CYTHON_USE_PYTYPE_LOOKUP 0 jpayne@69: #if PY_VERSION_HEX < 0x03050000 jpayne@69: #undef CYTHON_USE_ASYNC_SLOTS jpayne@69: #define CYTHON_USE_ASYNC_SLOTS 0 jpayne@69: #elif !defined(CYTHON_USE_ASYNC_SLOTS) jpayne@69: #define CYTHON_USE_ASYNC_SLOTS 1 jpayne@69: #endif jpayne@69: #undef CYTHON_USE_PYLIST_INTERNALS jpayne@69: #define CYTHON_USE_PYLIST_INTERNALS 0 jpayne@69: #undef CYTHON_USE_UNICODE_INTERNALS jpayne@69: #define CYTHON_USE_UNICODE_INTERNALS 0 jpayne@69: #undef CYTHON_USE_UNICODE_WRITER jpayne@69: #define CYTHON_USE_UNICODE_WRITER 0 jpayne@69: #undef CYTHON_USE_PYLONG_INTERNALS jpayne@69: #define CYTHON_USE_PYLONG_INTERNALS 0 jpayne@69: #undef CYTHON_AVOID_BORROWED_REFS jpayne@69: #define CYTHON_AVOID_BORROWED_REFS 1 jpayne@69: #undef CYTHON_ASSUME_SAFE_MACROS jpayne@69: #define CYTHON_ASSUME_SAFE_MACROS 0 jpayne@69: #undef CYTHON_UNPACK_METHODS jpayne@69: #define CYTHON_UNPACK_METHODS 0 jpayne@69: #undef CYTHON_FAST_THREAD_STATE jpayne@69: #define CYTHON_FAST_THREAD_STATE 0 jpayne@69: #undef CYTHON_FAST_GIL jpayne@69: #define CYTHON_FAST_GIL 0 jpayne@69: #undef CYTHON_METH_FASTCALL jpayne@69: #define CYTHON_METH_FASTCALL 0 jpayne@69: #undef CYTHON_FAST_PYCALL jpayne@69: #define CYTHON_FAST_PYCALL 0 jpayne@69: #ifndef CYTHON_PEP487_INIT_SUBCLASS jpayne@69: #define CYTHON_PEP487_INIT_SUBCLASS (PY_MAJOR_VERSION >= 3) jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX < 0x03090000 jpayne@69: #undef CYTHON_PEP489_MULTI_PHASE_INIT jpayne@69: #define CYTHON_PEP489_MULTI_PHASE_INIT 0 jpayne@69: #elif !defined(CYTHON_PEP489_MULTI_PHASE_INIT) jpayne@69: #define CYTHON_PEP489_MULTI_PHASE_INIT 1 jpayne@69: #endif jpayne@69: #undef CYTHON_USE_MODULE_STATE jpayne@69: #define CYTHON_USE_MODULE_STATE 0 jpayne@69: #undef CYTHON_USE_TP_FINALIZE jpayne@69: #define CYTHON_USE_TP_FINALIZE (PY_VERSION_HEX >= 0x030400a1 && PYPY_VERSION_NUM >= 0x07030C00) jpayne@69: #undef CYTHON_USE_DICT_VERSIONS jpayne@69: #define CYTHON_USE_DICT_VERSIONS 0 jpayne@69: #undef CYTHON_USE_EXC_INFO_STACK jpayne@69: #define CYTHON_USE_EXC_INFO_STACK 0 jpayne@69: #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC jpayne@69: #define CYTHON_UPDATE_DESCRIPTOR_DOC 0 jpayne@69: #endif jpayne@69: #undef CYTHON_USE_FREELISTS jpayne@69: #define CYTHON_USE_FREELISTS 0 jpayne@69: #elif defined(CYTHON_LIMITED_API) jpayne@69: #ifdef Py_LIMITED_API jpayne@69: #undef __PYX_LIMITED_VERSION_HEX jpayne@69: #define __PYX_LIMITED_VERSION_HEX Py_LIMITED_API jpayne@69: #endif jpayne@69: #define CYTHON_COMPILING_IN_PYPY 0 jpayne@69: #define CYTHON_COMPILING_IN_CPYTHON 0 jpayne@69: #define CYTHON_COMPILING_IN_LIMITED_API 1 jpayne@69: #define CYTHON_COMPILING_IN_GRAAL 0 jpayne@69: #define CYTHON_COMPILING_IN_NOGIL 0 jpayne@69: #undef CYTHON_CLINE_IN_TRACEBACK jpayne@69: #define CYTHON_CLINE_IN_TRACEBACK 0 jpayne@69: #undef CYTHON_USE_TYPE_SLOTS jpayne@69: #define CYTHON_USE_TYPE_SLOTS 0 jpayne@69: #undef CYTHON_USE_TYPE_SPECS jpayne@69: #define CYTHON_USE_TYPE_SPECS 1 jpayne@69: #undef CYTHON_USE_PYTYPE_LOOKUP jpayne@69: #define CYTHON_USE_PYTYPE_LOOKUP 0 jpayne@69: #undef CYTHON_USE_ASYNC_SLOTS jpayne@69: #define CYTHON_USE_ASYNC_SLOTS 0 jpayne@69: #undef CYTHON_USE_PYLIST_INTERNALS jpayne@69: #define CYTHON_USE_PYLIST_INTERNALS 0 jpayne@69: #undef CYTHON_USE_UNICODE_INTERNALS jpayne@69: #define CYTHON_USE_UNICODE_INTERNALS 0 jpayne@69: #ifndef CYTHON_USE_UNICODE_WRITER jpayne@69: #define CYTHON_USE_UNICODE_WRITER 0 jpayne@69: #endif jpayne@69: #undef CYTHON_USE_PYLONG_INTERNALS jpayne@69: #define CYTHON_USE_PYLONG_INTERNALS 0 jpayne@69: #ifndef CYTHON_AVOID_BORROWED_REFS jpayne@69: #define CYTHON_AVOID_BORROWED_REFS 0 jpayne@69: #endif jpayne@69: #undef CYTHON_ASSUME_SAFE_MACROS jpayne@69: #define CYTHON_ASSUME_SAFE_MACROS 0 jpayne@69: #undef CYTHON_UNPACK_METHODS jpayne@69: #define CYTHON_UNPACK_METHODS 0 jpayne@69: #undef CYTHON_FAST_THREAD_STATE jpayne@69: #define CYTHON_FAST_THREAD_STATE 0 jpayne@69: #undef CYTHON_FAST_GIL jpayne@69: #define CYTHON_FAST_GIL 0 jpayne@69: #undef CYTHON_METH_FASTCALL jpayne@69: #define CYTHON_METH_FASTCALL 0 jpayne@69: #undef CYTHON_FAST_PYCALL jpayne@69: #define CYTHON_FAST_PYCALL 0 jpayne@69: #ifndef CYTHON_PEP487_INIT_SUBCLASS jpayne@69: #define CYTHON_PEP487_INIT_SUBCLASS 1 jpayne@69: #endif jpayne@69: #undef CYTHON_PEP489_MULTI_PHASE_INIT jpayne@69: #define CYTHON_PEP489_MULTI_PHASE_INIT 0 jpayne@69: #undef CYTHON_USE_MODULE_STATE jpayne@69: #define CYTHON_USE_MODULE_STATE 1 jpayne@69: #ifndef CYTHON_USE_TP_FINALIZE jpayne@69: #define CYTHON_USE_TP_FINALIZE 0 jpayne@69: #endif jpayne@69: #undef CYTHON_USE_DICT_VERSIONS jpayne@69: #define CYTHON_USE_DICT_VERSIONS 0 jpayne@69: #undef CYTHON_USE_EXC_INFO_STACK jpayne@69: #define CYTHON_USE_EXC_INFO_STACK 0 jpayne@69: #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC jpayne@69: #define CYTHON_UPDATE_DESCRIPTOR_DOC 0 jpayne@69: #endif jpayne@69: #undef CYTHON_USE_FREELISTS jpayne@69: #define CYTHON_USE_FREELISTS 0 jpayne@69: #elif defined(Py_GIL_DISABLED) || defined(Py_NOGIL) jpayne@69: #define CYTHON_COMPILING_IN_PYPY 0 jpayne@69: #define CYTHON_COMPILING_IN_CPYTHON 0 jpayne@69: #define CYTHON_COMPILING_IN_LIMITED_API 0 jpayne@69: #define CYTHON_COMPILING_IN_GRAAL 0 jpayne@69: #define CYTHON_COMPILING_IN_NOGIL 1 jpayne@69: #ifndef CYTHON_USE_TYPE_SLOTS jpayne@69: #define CYTHON_USE_TYPE_SLOTS 1 jpayne@69: #endif jpayne@69: #ifndef CYTHON_USE_TYPE_SPECS jpayne@69: #define CYTHON_USE_TYPE_SPECS 0 jpayne@69: #endif jpayne@69: #undef CYTHON_USE_PYTYPE_LOOKUP jpayne@69: #define CYTHON_USE_PYTYPE_LOOKUP 0 jpayne@69: #ifndef CYTHON_USE_ASYNC_SLOTS jpayne@69: #define CYTHON_USE_ASYNC_SLOTS 1 jpayne@69: #endif jpayne@69: #ifndef CYTHON_USE_PYLONG_INTERNALS jpayne@69: #define CYTHON_USE_PYLONG_INTERNALS 0 jpayne@69: #endif jpayne@69: #undef CYTHON_USE_PYLIST_INTERNALS jpayne@69: #define CYTHON_USE_PYLIST_INTERNALS 0 jpayne@69: #ifndef CYTHON_USE_UNICODE_INTERNALS jpayne@69: #define CYTHON_USE_UNICODE_INTERNALS 1 jpayne@69: #endif jpayne@69: #undef CYTHON_USE_UNICODE_WRITER jpayne@69: #define CYTHON_USE_UNICODE_WRITER 0 jpayne@69: #ifndef CYTHON_AVOID_BORROWED_REFS jpayne@69: #define CYTHON_AVOID_BORROWED_REFS 0 jpayne@69: #endif jpayne@69: #ifndef CYTHON_ASSUME_SAFE_MACROS jpayne@69: #define CYTHON_ASSUME_SAFE_MACROS 1 jpayne@69: #endif jpayne@69: #ifndef CYTHON_UNPACK_METHODS jpayne@69: #define CYTHON_UNPACK_METHODS 1 jpayne@69: #endif jpayne@69: #undef CYTHON_FAST_THREAD_STATE jpayne@69: #define CYTHON_FAST_THREAD_STATE 0 jpayne@69: #undef CYTHON_FAST_GIL jpayne@69: #define CYTHON_FAST_GIL 0 jpayne@69: #ifndef CYTHON_METH_FASTCALL jpayne@69: #define CYTHON_METH_FASTCALL 1 jpayne@69: #endif jpayne@69: #undef CYTHON_FAST_PYCALL jpayne@69: #define CYTHON_FAST_PYCALL 0 jpayne@69: #ifndef CYTHON_PEP487_INIT_SUBCLASS jpayne@69: #define CYTHON_PEP487_INIT_SUBCLASS 1 jpayne@69: #endif jpayne@69: #ifndef CYTHON_PEP489_MULTI_PHASE_INIT jpayne@69: #define CYTHON_PEP489_MULTI_PHASE_INIT 1 jpayne@69: #endif jpayne@69: #ifndef CYTHON_USE_MODULE_STATE jpayne@69: #define CYTHON_USE_MODULE_STATE 0 jpayne@69: #endif jpayne@69: #ifndef CYTHON_USE_TP_FINALIZE jpayne@69: #define CYTHON_USE_TP_FINALIZE 1 jpayne@69: #endif jpayne@69: #undef CYTHON_USE_DICT_VERSIONS jpayne@69: #define CYTHON_USE_DICT_VERSIONS 0 jpayne@69: #undef CYTHON_USE_EXC_INFO_STACK jpayne@69: #define CYTHON_USE_EXC_INFO_STACK 0 jpayne@69: #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC jpayne@69: #define CYTHON_UPDATE_DESCRIPTOR_DOC 1 jpayne@69: #endif jpayne@69: #ifndef CYTHON_USE_FREELISTS jpayne@69: #define CYTHON_USE_FREELISTS 0 jpayne@69: #endif jpayne@69: #else jpayne@69: #define CYTHON_COMPILING_IN_PYPY 0 jpayne@69: #define CYTHON_COMPILING_IN_CPYTHON 1 jpayne@69: #define CYTHON_COMPILING_IN_LIMITED_API 0 jpayne@69: #define CYTHON_COMPILING_IN_GRAAL 0 jpayne@69: #define CYTHON_COMPILING_IN_NOGIL 0 jpayne@69: #ifndef CYTHON_USE_TYPE_SLOTS jpayne@69: #define CYTHON_USE_TYPE_SLOTS 1 jpayne@69: #endif jpayne@69: #ifndef CYTHON_USE_TYPE_SPECS jpayne@69: #define CYTHON_USE_TYPE_SPECS 0 jpayne@69: #endif jpayne@69: #ifndef CYTHON_USE_PYTYPE_LOOKUP jpayne@69: #define CYTHON_USE_PYTYPE_LOOKUP 1 jpayne@69: #endif jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: #undef CYTHON_USE_ASYNC_SLOTS jpayne@69: #define CYTHON_USE_ASYNC_SLOTS 0 jpayne@69: #elif !defined(CYTHON_USE_ASYNC_SLOTS) jpayne@69: #define CYTHON_USE_ASYNC_SLOTS 1 jpayne@69: #endif jpayne@69: #ifndef CYTHON_USE_PYLONG_INTERNALS jpayne@69: #define CYTHON_USE_PYLONG_INTERNALS 1 jpayne@69: #endif jpayne@69: #ifndef CYTHON_USE_PYLIST_INTERNALS jpayne@69: #define CYTHON_USE_PYLIST_INTERNALS 1 jpayne@69: #endif jpayne@69: #ifndef CYTHON_USE_UNICODE_INTERNALS jpayne@69: #define CYTHON_USE_UNICODE_INTERNALS 1 jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX < 0x030300F0 || PY_VERSION_HEX >= 0x030B00A2 jpayne@69: #undef CYTHON_USE_UNICODE_WRITER jpayne@69: #define CYTHON_USE_UNICODE_WRITER 0 jpayne@69: #elif !defined(CYTHON_USE_UNICODE_WRITER) jpayne@69: #define CYTHON_USE_UNICODE_WRITER 1 jpayne@69: #endif jpayne@69: #ifndef CYTHON_AVOID_BORROWED_REFS jpayne@69: #define CYTHON_AVOID_BORROWED_REFS 0 jpayne@69: #endif jpayne@69: #ifndef CYTHON_ASSUME_SAFE_MACROS jpayne@69: #define CYTHON_ASSUME_SAFE_MACROS 1 jpayne@69: #endif jpayne@69: #ifndef CYTHON_UNPACK_METHODS jpayne@69: #define CYTHON_UNPACK_METHODS 1 jpayne@69: #endif jpayne@69: #ifndef CYTHON_FAST_THREAD_STATE jpayne@69: #define CYTHON_FAST_THREAD_STATE 1 jpayne@69: #endif jpayne@69: #ifndef CYTHON_FAST_GIL jpayne@69: #define CYTHON_FAST_GIL (PY_MAJOR_VERSION < 3 || PY_VERSION_HEX >= 0x03060000 && PY_VERSION_HEX < 0x030C00A6) jpayne@69: #endif jpayne@69: #ifndef CYTHON_METH_FASTCALL jpayne@69: #define CYTHON_METH_FASTCALL (PY_VERSION_HEX >= 0x030700A1) jpayne@69: #endif jpayne@69: #ifndef CYTHON_FAST_PYCALL jpayne@69: #define CYTHON_FAST_PYCALL 1 jpayne@69: #endif jpayne@69: #ifndef CYTHON_PEP487_INIT_SUBCLASS jpayne@69: #define CYTHON_PEP487_INIT_SUBCLASS 1 jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX < 0x03050000 jpayne@69: #undef CYTHON_PEP489_MULTI_PHASE_INIT jpayne@69: #define CYTHON_PEP489_MULTI_PHASE_INIT 0 jpayne@69: #elif !defined(CYTHON_PEP489_MULTI_PHASE_INIT) jpayne@69: #define CYTHON_PEP489_MULTI_PHASE_INIT 1 jpayne@69: #endif jpayne@69: #ifndef CYTHON_USE_MODULE_STATE jpayne@69: #define CYTHON_USE_MODULE_STATE 0 jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX < 0x030400a1 jpayne@69: #undef CYTHON_USE_TP_FINALIZE jpayne@69: #define CYTHON_USE_TP_FINALIZE 0 jpayne@69: #elif !defined(CYTHON_USE_TP_FINALIZE) jpayne@69: #define CYTHON_USE_TP_FINALIZE 1 jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX < 0x030600B1 jpayne@69: #undef CYTHON_USE_DICT_VERSIONS jpayne@69: #define CYTHON_USE_DICT_VERSIONS 0 jpayne@69: #elif !defined(CYTHON_USE_DICT_VERSIONS) jpayne@69: #define CYTHON_USE_DICT_VERSIONS (PY_VERSION_HEX < 0x030C00A5) jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX < 0x030700A3 jpayne@69: #undef CYTHON_USE_EXC_INFO_STACK jpayne@69: #define CYTHON_USE_EXC_INFO_STACK 0 jpayne@69: #elif !defined(CYTHON_USE_EXC_INFO_STACK) jpayne@69: #define CYTHON_USE_EXC_INFO_STACK 1 jpayne@69: #endif jpayne@69: #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC jpayne@69: #define CYTHON_UPDATE_DESCRIPTOR_DOC 1 jpayne@69: #endif jpayne@69: #ifndef CYTHON_USE_FREELISTS jpayne@69: #define CYTHON_USE_FREELISTS 1 jpayne@69: #endif jpayne@69: #endif jpayne@69: #if !defined(CYTHON_FAST_PYCCALL) jpayne@69: #define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1) jpayne@69: #endif jpayne@69: #if !defined(CYTHON_VECTORCALL) jpayne@69: #define CYTHON_VECTORCALL (CYTHON_FAST_PYCCALL && PY_VERSION_HEX >= 0x030800B1) jpayne@69: #endif jpayne@69: #define CYTHON_BACKPORT_VECTORCALL (CYTHON_METH_FASTCALL && PY_VERSION_HEX < 0x030800B1) jpayne@69: #if CYTHON_USE_PYLONG_INTERNALS jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: #include "longintrepr.h" jpayne@69: #endif jpayne@69: #undef SHIFT jpayne@69: #undef BASE jpayne@69: #undef MASK jpayne@69: #ifdef SIZEOF_VOID_P jpayne@69: enum { __pyx_check_sizeof_voidp = 1 / (int)(SIZEOF_VOID_P == sizeof(void*)) }; jpayne@69: #endif jpayne@69: #endif jpayne@69: #ifndef __has_attribute jpayne@69: #define __has_attribute(x) 0 jpayne@69: #endif jpayne@69: #ifndef __has_cpp_attribute jpayne@69: #define __has_cpp_attribute(x) 0 jpayne@69: #endif jpayne@69: #ifndef CYTHON_RESTRICT jpayne@69: #if defined(__GNUC__) jpayne@69: #define CYTHON_RESTRICT __restrict__ jpayne@69: #elif defined(_MSC_VER) && _MSC_VER >= 1400 jpayne@69: #define CYTHON_RESTRICT __restrict jpayne@69: #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L jpayne@69: #define CYTHON_RESTRICT restrict jpayne@69: #else jpayne@69: #define CYTHON_RESTRICT jpayne@69: #endif jpayne@69: #endif jpayne@69: #ifndef CYTHON_UNUSED jpayne@69: #if defined(__cplusplus) jpayne@69: /* for clang __has_cpp_attribute(maybe_unused) is true even before C++17 jpayne@69: * but leads to warnings with -pedantic, since it is a C++17 feature */ jpayne@69: #if ((defined(_MSVC_LANG) && _MSVC_LANG >= 201703L) || __cplusplus >= 201703L) jpayne@69: #if __has_cpp_attribute(maybe_unused) jpayne@69: #define CYTHON_UNUSED [[maybe_unused]] jpayne@69: #endif jpayne@69: #endif jpayne@69: #endif jpayne@69: #endif jpayne@69: #ifndef CYTHON_UNUSED jpayne@69: # if defined(__GNUC__) jpayne@69: # if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) jpayne@69: # define CYTHON_UNUSED __attribute__ ((__unused__)) jpayne@69: # else jpayne@69: # define CYTHON_UNUSED jpayne@69: # endif jpayne@69: # elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) jpayne@69: # define CYTHON_UNUSED __attribute__ ((__unused__)) jpayne@69: # else jpayne@69: # define CYTHON_UNUSED jpayne@69: # endif jpayne@69: #endif jpayne@69: #ifndef CYTHON_UNUSED_VAR jpayne@69: # if defined(__cplusplus) jpayne@69: template void CYTHON_UNUSED_VAR( const T& ) { } jpayne@69: # else jpayne@69: # define CYTHON_UNUSED_VAR(x) (void)(x) jpayne@69: # endif jpayne@69: #endif jpayne@69: #ifndef CYTHON_MAYBE_UNUSED_VAR jpayne@69: #define CYTHON_MAYBE_UNUSED_VAR(x) CYTHON_UNUSED_VAR(x) jpayne@69: #endif jpayne@69: #ifndef CYTHON_NCP_UNUSED jpayne@69: # if CYTHON_COMPILING_IN_CPYTHON jpayne@69: # define CYTHON_NCP_UNUSED jpayne@69: # else jpayne@69: # define CYTHON_NCP_UNUSED CYTHON_UNUSED jpayne@69: # endif jpayne@69: #endif jpayne@69: #ifndef CYTHON_USE_CPP_STD_MOVE jpayne@69: #if defined(__cplusplus) && (\ jpayne@69: __cplusplus >= 201103L || (defined(_MSC_VER) && _MSC_VER >= 1600)) jpayne@69: #define CYTHON_USE_CPP_STD_MOVE 1 jpayne@69: #else jpayne@69: #define CYTHON_USE_CPP_STD_MOVE 0 jpayne@69: #endif jpayne@69: #endif jpayne@69: #define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) jpayne@69: #ifdef _MSC_VER jpayne@69: #ifndef _MSC_STDINT_H_ jpayne@69: #if _MSC_VER < 1300 jpayne@69: typedef unsigned char uint8_t; jpayne@69: typedef unsigned short uint16_t; jpayne@69: typedef unsigned int uint32_t; jpayne@69: #else jpayne@69: typedef unsigned __int8 uint8_t; jpayne@69: typedef unsigned __int16 uint16_t; jpayne@69: typedef unsigned __int32 uint32_t; jpayne@69: #endif jpayne@69: #endif jpayne@69: #if _MSC_VER < 1300 jpayne@69: #ifdef _WIN64 jpayne@69: typedef unsigned long long __pyx_uintptr_t; jpayne@69: #else jpayne@69: typedef unsigned int __pyx_uintptr_t; jpayne@69: #endif jpayne@69: #else jpayne@69: #ifdef _WIN64 jpayne@69: typedef unsigned __int64 __pyx_uintptr_t; jpayne@69: #else jpayne@69: typedef unsigned __int32 __pyx_uintptr_t; jpayne@69: #endif jpayne@69: #endif jpayne@69: #else jpayne@69: #include jpayne@69: typedef uintptr_t __pyx_uintptr_t; jpayne@69: #endif jpayne@69: #ifndef CYTHON_FALLTHROUGH jpayne@69: #if defined(__cplusplus) jpayne@69: /* for clang __has_cpp_attribute(fallthrough) is true even before C++17 jpayne@69: * but leads to warnings with -pedantic, since it is a C++17 feature */ jpayne@69: #if ((defined(_MSVC_LANG) && _MSVC_LANG >= 201703L) || __cplusplus >= 201703L) jpayne@69: #if __has_cpp_attribute(fallthrough) jpayne@69: #define CYTHON_FALLTHROUGH [[fallthrough]] jpayne@69: #endif jpayne@69: #endif jpayne@69: #ifndef CYTHON_FALLTHROUGH jpayne@69: #if __has_cpp_attribute(clang::fallthrough) jpayne@69: #define CYTHON_FALLTHROUGH [[clang::fallthrough]] jpayne@69: #elif __has_cpp_attribute(gnu::fallthrough) jpayne@69: #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] jpayne@69: #endif jpayne@69: #endif jpayne@69: #endif jpayne@69: #ifndef CYTHON_FALLTHROUGH jpayne@69: #if __has_attribute(fallthrough) jpayne@69: #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) jpayne@69: #else jpayne@69: #define CYTHON_FALLTHROUGH jpayne@69: #endif jpayne@69: #endif jpayne@69: #if defined(__clang__) && defined(__apple_build_version__) jpayne@69: #if __apple_build_version__ < 7000000 jpayne@69: #undef CYTHON_FALLTHROUGH jpayne@69: #define CYTHON_FALLTHROUGH jpayne@69: #endif jpayne@69: #endif jpayne@69: #endif jpayne@69: #ifdef __cplusplus jpayne@69: template jpayne@69: struct __PYX_IS_UNSIGNED_IMPL {static const bool value = T(0) < T(-1);}; jpayne@69: #define __PYX_IS_UNSIGNED(type) (__PYX_IS_UNSIGNED_IMPL::value) jpayne@69: #else jpayne@69: #define __PYX_IS_UNSIGNED(type) (((type)-1) > 0) jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_PYPY == 1 jpayne@69: #define __PYX_NEED_TP_PRINT_SLOT (PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x030A0000) jpayne@69: #else jpayne@69: #define __PYX_NEED_TP_PRINT_SLOT (PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000) jpayne@69: #endif jpayne@69: #define __PYX_REINTERPRET_FUNCION(func_pointer, other_pointer) ((func_pointer)(void(*)(void))(other_pointer)) jpayne@69: jpayne@69: #ifndef CYTHON_INLINE jpayne@69: #if defined(__clang__) jpayne@69: #define CYTHON_INLINE __inline__ __attribute__ ((__unused__)) jpayne@69: #elif defined(__GNUC__) jpayne@69: #define CYTHON_INLINE __inline__ jpayne@69: #elif defined(_MSC_VER) jpayne@69: #define CYTHON_INLINE __inline jpayne@69: #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L jpayne@69: #define CYTHON_INLINE inline jpayne@69: #else jpayne@69: #define CYTHON_INLINE jpayne@69: #endif jpayne@69: #endif jpayne@69: jpayne@69: #define __PYX_BUILD_PY_SSIZE_T "n" jpayne@69: #define CYTHON_FORMAT_SSIZE_T "z" jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" jpayne@69: #define __Pyx_DefaultClassType PyClass_Type jpayne@69: #define __Pyx_PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ jpayne@69: PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) jpayne@69: #else jpayne@69: #define __Pyx_BUILTIN_MODULE_NAME "builtins" jpayne@69: #define __Pyx_DefaultClassType PyType_Type jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyCode_New(int a, int p, int k, int l, int s, int f, jpayne@69: PyObject *code, PyObject *c, PyObject* n, PyObject *v, jpayne@69: PyObject *fv, PyObject *cell, PyObject* fn, jpayne@69: PyObject *name, int fline, PyObject *lnos) { jpayne@69: PyObject *exception_table = NULL; jpayne@69: PyObject *types_module=NULL, *code_type=NULL, *result=NULL; jpayne@69: #if __PYX_LIMITED_VERSION_HEX < 0x030B0000 jpayne@69: PyObject *version_info; jpayne@69: PyObject *py_minor_version = NULL; jpayne@69: #endif jpayne@69: long minor_version = 0; jpayne@69: PyObject *type, *value, *traceback; jpayne@69: PyErr_Fetch(&type, &value, &traceback); jpayne@69: #if __PYX_LIMITED_VERSION_HEX >= 0x030B0000 jpayne@69: minor_version = 11; jpayne@69: #else jpayne@69: if (!(version_info = PySys_GetObject("version_info"))) goto end; jpayne@69: if (!(py_minor_version = PySequence_GetItem(version_info, 1))) goto end; jpayne@69: minor_version = PyLong_AsLong(py_minor_version); jpayne@69: Py_DECREF(py_minor_version); jpayne@69: if (minor_version == -1 && PyErr_Occurred()) goto end; jpayne@69: #endif jpayne@69: if (!(types_module = PyImport_ImportModule("types"))) goto end; jpayne@69: if (!(code_type = PyObject_GetAttrString(types_module, "CodeType"))) goto end; jpayne@69: if (minor_version <= 7) { jpayne@69: (void)p; jpayne@69: result = PyObject_CallFunction(code_type, "iiiiiOOOOOOiOO", a, k, l, s, f, code, jpayne@69: c, n, v, fn, name, fline, lnos, fv, cell); jpayne@69: } else if (minor_version <= 10) { jpayne@69: result = PyObject_CallFunction(code_type, "iiiiiiOOOOOOiOO", a,p, k, l, s, f, code, jpayne@69: c, n, v, fn, name, fline, lnos, fv, cell); jpayne@69: } else { jpayne@69: if (!(exception_table = PyBytes_FromStringAndSize(NULL, 0))) goto end; jpayne@69: result = PyObject_CallFunction(code_type, "iiiiiiOOOOOOOiOO", a,p, k, l, s, f, code, jpayne@69: c, n, v, fn, name, name, fline, lnos, exception_table, fv, cell); jpayne@69: } jpayne@69: end: jpayne@69: Py_XDECREF(code_type); jpayne@69: Py_XDECREF(exception_table); jpayne@69: Py_XDECREF(types_module); jpayne@69: if (type) { jpayne@69: PyErr_Restore(type, value, traceback); jpayne@69: } jpayne@69: return result; jpayne@69: } jpayne@69: #ifndef CO_OPTIMIZED jpayne@69: #define CO_OPTIMIZED 0x0001 jpayne@69: #endif jpayne@69: #ifndef CO_NEWLOCALS jpayne@69: #define CO_NEWLOCALS 0x0002 jpayne@69: #endif jpayne@69: #ifndef CO_VARARGS jpayne@69: #define CO_VARARGS 0x0004 jpayne@69: #endif jpayne@69: #ifndef CO_VARKEYWORDS jpayne@69: #define CO_VARKEYWORDS 0x0008 jpayne@69: #endif jpayne@69: #ifndef CO_ASYNC_GENERATOR jpayne@69: #define CO_ASYNC_GENERATOR 0x0200 jpayne@69: #endif jpayne@69: #ifndef CO_GENERATOR jpayne@69: #define CO_GENERATOR 0x0020 jpayne@69: #endif jpayne@69: #ifndef CO_COROUTINE jpayne@69: #define CO_COROUTINE 0x0080 jpayne@69: #endif jpayne@69: #elif PY_VERSION_HEX >= 0x030B0000 jpayne@69: static CYTHON_INLINE PyCodeObject* __Pyx_PyCode_New(int a, int p, int k, int l, int s, int f, jpayne@69: PyObject *code, PyObject *c, PyObject* n, PyObject *v, jpayne@69: PyObject *fv, PyObject *cell, PyObject* fn, jpayne@69: PyObject *name, int fline, PyObject *lnos) { jpayne@69: PyCodeObject *result; jpayne@69: PyObject *empty_bytes = PyBytes_FromStringAndSize("", 0); jpayne@69: if (!empty_bytes) return NULL; jpayne@69: result = jpayne@69: #if PY_VERSION_HEX >= 0x030C0000 jpayne@69: PyUnstable_Code_NewWithPosOnlyArgs jpayne@69: #else jpayne@69: PyCode_NewWithPosOnlyArgs jpayne@69: #endif jpayne@69: (a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, name, fline, lnos, empty_bytes); jpayne@69: Py_DECREF(empty_bytes); jpayne@69: return result; jpayne@69: } jpayne@69: #elif PY_VERSION_HEX >= 0x030800B2 && !CYTHON_COMPILING_IN_PYPY jpayne@69: #define __Pyx_PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ jpayne@69: PyCode_NewWithPosOnlyArgs(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) jpayne@69: #else jpayne@69: #define __Pyx_PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ jpayne@69: PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) jpayne@69: #endif jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX >= 0x030900A4 || defined(Py_IS_TYPE) jpayne@69: #define __Pyx_IS_TYPE(ob, type) Py_IS_TYPE(ob, type) jpayne@69: #else jpayne@69: #define __Pyx_IS_TYPE(ob, type) (((const PyObject*)ob)->ob_type == (type)) jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_Is) jpayne@69: #define __Pyx_Py_Is(x, y) Py_Is(x, y) jpayne@69: #else jpayne@69: #define __Pyx_Py_Is(x, y) ((x) == (y)) jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsNone) jpayne@69: #define __Pyx_Py_IsNone(ob) Py_IsNone(ob) jpayne@69: #else jpayne@69: #define __Pyx_Py_IsNone(ob) __Pyx_Py_Is((ob), Py_None) jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsTrue) jpayne@69: #define __Pyx_Py_IsTrue(ob) Py_IsTrue(ob) jpayne@69: #else jpayne@69: #define __Pyx_Py_IsTrue(ob) __Pyx_Py_Is((ob), Py_True) jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsFalse) jpayne@69: #define __Pyx_Py_IsFalse(ob) Py_IsFalse(ob) jpayne@69: #else jpayne@69: #define __Pyx_Py_IsFalse(ob) __Pyx_Py_Is((ob), Py_False) jpayne@69: #endif jpayne@69: #define __Pyx_NoneAsNull(obj) (__Pyx_Py_IsNone(obj) ? NULL : (obj)) jpayne@69: #if PY_VERSION_HEX >= 0x030900F0 && !CYTHON_COMPILING_IN_PYPY jpayne@69: #define __Pyx_PyObject_GC_IsFinalized(o) PyObject_GC_IsFinalized(o) jpayne@69: #else jpayne@69: #define __Pyx_PyObject_GC_IsFinalized(o) _PyGC_FINALIZED(o) jpayne@69: #endif jpayne@69: #ifndef CO_COROUTINE jpayne@69: #define CO_COROUTINE 0x80 jpayne@69: #endif jpayne@69: #ifndef CO_ASYNC_GENERATOR jpayne@69: #define CO_ASYNC_GENERATOR 0x200 jpayne@69: #endif jpayne@69: #ifndef Py_TPFLAGS_CHECKTYPES jpayne@69: #define Py_TPFLAGS_CHECKTYPES 0 jpayne@69: #endif jpayne@69: #ifndef Py_TPFLAGS_HAVE_INDEX jpayne@69: #define Py_TPFLAGS_HAVE_INDEX 0 jpayne@69: #endif jpayne@69: #ifndef Py_TPFLAGS_HAVE_NEWBUFFER jpayne@69: #define Py_TPFLAGS_HAVE_NEWBUFFER 0 jpayne@69: #endif jpayne@69: #ifndef Py_TPFLAGS_HAVE_FINALIZE jpayne@69: #define Py_TPFLAGS_HAVE_FINALIZE 0 jpayne@69: #endif jpayne@69: #ifndef Py_TPFLAGS_SEQUENCE jpayne@69: #define Py_TPFLAGS_SEQUENCE 0 jpayne@69: #endif jpayne@69: #ifndef Py_TPFLAGS_MAPPING jpayne@69: #define Py_TPFLAGS_MAPPING 0 jpayne@69: #endif jpayne@69: #ifndef METH_STACKLESS jpayne@69: #define METH_STACKLESS 0 jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX <= 0x030700A3 || !defined(METH_FASTCALL) jpayne@69: #ifndef METH_FASTCALL jpayne@69: #define METH_FASTCALL 0x80 jpayne@69: #endif jpayne@69: typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject *const *args, Py_ssize_t nargs); jpayne@69: typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject *const *args, jpayne@69: Py_ssize_t nargs, PyObject *kwnames); jpayne@69: #else jpayne@69: #if PY_VERSION_HEX >= 0x030d00A4 jpayne@69: # define __Pyx_PyCFunctionFast PyCFunctionFast jpayne@69: # define __Pyx_PyCFunctionFastWithKeywords PyCFunctionFastWithKeywords jpayne@69: #else jpayne@69: # define __Pyx_PyCFunctionFast _PyCFunctionFast jpayne@69: # define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords jpayne@69: #endif jpayne@69: #endif jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: #define __Pyx_METH_FASTCALL METH_FASTCALL jpayne@69: #define __Pyx_PyCFunction_FastCall __Pyx_PyCFunctionFast jpayne@69: #define __Pyx_PyCFunction_FastCallWithKeywords __Pyx_PyCFunctionFastWithKeywords jpayne@69: #else jpayne@69: #define __Pyx_METH_FASTCALL METH_VARARGS jpayne@69: #define __Pyx_PyCFunction_FastCall PyCFunction jpayne@69: #define __Pyx_PyCFunction_FastCallWithKeywords PyCFunctionWithKeywords jpayne@69: #endif jpayne@69: #if CYTHON_VECTORCALL jpayne@69: #define __pyx_vectorcallfunc vectorcallfunc jpayne@69: #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET PY_VECTORCALL_ARGUMENTS_OFFSET jpayne@69: #define __Pyx_PyVectorcall_NARGS(n) PyVectorcall_NARGS((size_t)(n)) jpayne@69: #elif CYTHON_BACKPORT_VECTORCALL jpayne@69: typedef PyObject *(*__pyx_vectorcallfunc)(PyObject *callable, PyObject *const *args, jpayne@69: size_t nargsf, PyObject *kwnames); jpayne@69: #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET ((size_t)1 << (8 * sizeof(size_t) - 1)) jpayne@69: #define __Pyx_PyVectorcall_NARGS(n) ((Py_ssize_t)(((size_t)(n)) & ~__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET)) jpayne@69: #else jpayne@69: #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET 0 jpayne@69: #define __Pyx_PyVectorcall_NARGS(n) ((Py_ssize_t)(n)) jpayne@69: #endif jpayne@69: #if PY_MAJOR_VERSION >= 0x030900B1 jpayne@69: #define __Pyx_PyCFunction_CheckExact(func) PyCFunction_CheckExact(func) jpayne@69: #else jpayne@69: #define __Pyx_PyCFunction_CheckExact(func) PyCFunction_Check(func) jpayne@69: #endif jpayne@69: #define __Pyx_CyOrPyCFunction_Check(func) PyCFunction_Check(func) jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON jpayne@69: #define __Pyx_CyOrPyCFunction_GET_FUNCTION(func) (((PyCFunctionObject*)(func))->m_ml->ml_meth) jpayne@69: #elif !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: #define __Pyx_CyOrPyCFunction_GET_FUNCTION(func) PyCFunction_GET_FUNCTION(func) jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON jpayne@69: #define __Pyx_CyOrPyCFunction_GET_FLAGS(func) (((PyCFunctionObject*)(func))->m_ml->ml_flags) jpayne@69: static CYTHON_INLINE PyObject* __Pyx_CyOrPyCFunction_GET_SELF(PyObject *func) { jpayne@69: return (__Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_STATIC) ? NULL : ((PyCFunctionObject*)func)->m_self; jpayne@69: } jpayne@69: #endif jpayne@69: static CYTHON_INLINE int __Pyx__IsSameCFunction(PyObject *func, void *cfunc) { jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: return PyCFunction_Check(func) && PyCFunction_GetFunction(func) == (PyCFunction) cfunc; jpayne@69: #else jpayne@69: return PyCFunction_Check(func) && PyCFunction_GET_FUNCTION(func) == (PyCFunction) cfunc; jpayne@69: #endif jpayne@69: } jpayne@69: #define __Pyx_IsSameCFunction(func, cfunc) __Pyx__IsSameCFunction(func, cfunc) jpayne@69: #if __PYX_LIMITED_VERSION_HEX < 0x030900B1 jpayne@69: #define __Pyx_PyType_FromModuleAndSpec(m, s, b) ((void)m, PyType_FromSpecWithBases(s, b)) jpayne@69: typedef PyObject *(*__Pyx_PyCMethod)(PyObject *, PyTypeObject *, PyObject *const *, size_t, PyObject *); jpayne@69: #else jpayne@69: #define __Pyx_PyType_FromModuleAndSpec(m, s, b) PyType_FromModuleAndSpec(m, s, b) jpayne@69: #define __Pyx_PyCMethod PyCMethod jpayne@69: #endif jpayne@69: #ifndef METH_METHOD jpayne@69: #define METH_METHOD 0x200 jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc) jpayne@69: #define PyObject_Malloc(s) PyMem_Malloc(s) jpayne@69: #define PyObject_Free(p) PyMem_Free(p) jpayne@69: #define PyObject_Realloc(p) PyMem_Realloc(p) jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) jpayne@69: #define __Pyx_PyFrame_SetLineNumber(frame, lineno) jpayne@69: #else jpayne@69: #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) jpayne@69: #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno) jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: #define __Pyx_PyThreadState_Current PyThreadState_Get() jpayne@69: #elif !CYTHON_FAST_THREAD_STATE jpayne@69: #define __Pyx_PyThreadState_Current PyThreadState_GET() jpayne@69: #elif PY_VERSION_HEX >= 0x030d00A1 jpayne@69: #define __Pyx_PyThreadState_Current PyThreadState_GetUnchecked() jpayne@69: #elif PY_VERSION_HEX >= 0x03060000 jpayne@69: #define __Pyx_PyThreadState_Current _PyThreadState_UncheckedGet() jpayne@69: #elif PY_VERSION_HEX >= 0x03000000 jpayne@69: #define __Pyx_PyThreadState_Current PyThreadState_GET() jpayne@69: #else jpayne@69: #define __Pyx_PyThreadState_Current _PyThreadState_Current jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: static CYTHON_INLINE void *__Pyx_PyModule_GetState(PyObject *op) jpayne@69: { jpayne@69: void *result; jpayne@69: result = PyModule_GetState(op); jpayne@69: if (!result) jpayne@69: Py_FatalError("Couldn't find the module state"); jpayne@69: return result; jpayne@69: } jpayne@69: #endif jpayne@69: #define __Pyx_PyObject_GetSlot(obj, name, func_ctype) __Pyx_PyType_GetSlot(Py_TYPE(obj), name, func_ctype) jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: #define __Pyx_PyType_GetSlot(type, name, func_ctype) ((func_ctype) PyType_GetSlot((type), Py_##name)) jpayne@69: #else jpayne@69: #define __Pyx_PyType_GetSlot(type, name, func_ctype) ((type)->name) jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX < 0x030700A2 && !defined(PyThread_tss_create) && !defined(Py_tss_NEEDS_INIT) jpayne@69: #include "pythread.h" jpayne@69: #define Py_tss_NEEDS_INIT 0 jpayne@69: typedef int Py_tss_t; jpayne@69: static CYTHON_INLINE int PyThread_tss_create(Py_tss_t *key) { jpayne@69: *key = PyThread_create_key(); jpayne@69: return 0; jpayne@69: } jpayne@69: static CYTHON_INLINE Py_tss_t * PyThread_tss_alloc(void) { jpayne@69: Py_tss_t *key = (Py_tss_t *)PyObject_Malloc(sizeof(Py_tss_t)); jpayne@69: *key = Py_tss_NEEDS_INIT; jpayne@69: return key; jpayne@69: } jpayne@69: static CYTHON_INLINE void PyThread_tss_free(Py_tss_t *key) { jpayne@69: PyObject_Free(key); jpayne@69: } jpayne@69: static CYTHON_INLINE int PyThread_tss_is_created(Py_tss_t *key) { jpayne@69: return *key != Py_tss_NEEDS_INIT; jpayne@69: } jpayne@69: static CYTHON_INLINE void PyThread_tss_delete(Py_tss_t *key) { jpayne@69: PyThread_delete_key(*key); jpayne@69: *key = Py_tss_NEEDS_INIT; jpayne@69: } jpayne@69: static CYTHON_INLINE int PyThread_tss_set(Py_tss_t *key, void *value) { jpayne@69: return PyThread_set_key_value(*key, value); jpayne@69: } jpayne@69: static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) { jpayne@69: return PyThread_get_key_value(*key); jpayne@69: } jpayne@69: #endif jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: #if CYTHON_COMPILING_IN_PYPY jpayne@69: #if PYPY_VERSION_NUM < 0x07030600 jpayne@69: #if defined(__cplusplus) && __cplusplus >= 201402L jpayne@69: [[deprecated("`with nogil:` inside a nogil function will not release the GIL in PyPy2 < 7.3.6")]] jpayne@69: #elif defined(__GNUC__) || defined(__clang__) jpayne@69: __attribute__ ((__deprecated__("`with nogil:` inside a nogil function will not release the GIL in PyPy2 < 7.3.6"))) jpayne@69: #elif defined(_MSC_VER) jpayne@69: __declspec(deprecated("`with nogil:` inside a nogil function will not release the GIL in PyPy2 < 7.3.6")) jpayne@69: #endif jpayne@69: static CYTHON_INLINE int PyGILState_Check(void) { jpayne@69: return 0; jpayne@69: } jpayne@69: #else // PYPY_VERSION_NUM < 0x07030600 jpayne@69: #endif // PYPY_VERSION_NUM < 0x07030600 jpayne@69: #else jpayne@69: static CYTHON_INLINE int PyGILState_Check(void) { jpayne@69: PyThreadState * tstate = _PyThreadState_Current; jpayne@69: return tstate && (tstate == PyGILState_GetThisThreadState()); jpayne@69: } jpayne@69: #endif jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030d0000 || defined(_PyDict_NewPresized) jpayne@69: #define __Pyx_PyDict_NewPresized(n) ((n <= 8) ? PyDict_New() : _PyDict_NewPresized(n)) jpayne@69: #else jpayne@69: #define __Pyx_PyDict_NewPresized(n) PyDict_New() jpayne@69: #endif jpayne@69: #if PY_MAJOR_VERSION >= 3 || CYTHON_FUTURE_DIVISION jpayne@69: #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) jpayne@69: #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) jpayne@69: #else jpayne@69: #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) jpayne@69: #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX > 0x030600B4 && PY_VERSION_HEX < 0x030d0000 && CYTHON_USE_UNICODE_INTERNALS jpayne@69: #define __Pyx_PyDict_GetItemStrWithError(dict, name) _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash) jpayne@69: static CYTHON_INLINE PyObject * __Pyx_PyDict_GetItemStr(PyObject *dict, PyObject *name) { jpayne@69: PyObject *res = __Pyx_PyDict_GetItemStrWithError(dict, name); jpayne@69: if (res == NULL) PyErr_Clear(); jpayne@69: return res; jpayne@69: } jpayne@69: #elif PY_MAJOR_VERSION >= 3 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07020000) jpayne@69: #define __Pyx_PyDict_GetItemStrWithError PyDict_GetItemWithError jpayne@69: #define __Pyx_PyDict_GetItemStr PyDict_GetItem jpayne@69: #else jpayne@69: static CYTHON_INLINE PyObject * __Pyx_PyDict_GetItemStrWithError(PyObject *dict, PyObject *name) { jpayne@69: #if CYTHON_COMPILING_IN_PYPY jpayne@69: return PyDict_GetItem(dict, name); jpayne@69: #else jpayne@69: PyDictEntry *ep; jpayne@69: PyDictObject *mp = (PyDictObject*) dict; jpayne@69: long hash = ((PyStringObject *) name)->ob_shash; jpayne@69: assert(hash != -1); jpayne@69: ep = (mp->ma_lookup)(mp, name, hash); jpayne@69: if (ep == NULL) { jpayne@69: return NULL; jpayne@69: } jpayne@69: return ep->me_value; jpayne@69: #endif jpayne@69: } jpayne@69: #define __Pyx_PyDict_GetItemStr PyDict_GetItem jpayne@69: #endif jpayne@69: #if CYTHON_USE_TYPE_SLOTS jpayne@69: #define __Pyx_PyType_GetFlags(tp) (((PyTypeObject *)tp)->tp_flags) jpayne@69: #define __Pyx_PyType_HasFeature(type, feature) ((__Pyx_PyType_GetFlags(type) & (feature)) != 0) jpayne@69: #define __Pyx_PyObject_GetIterNextFunc(obj) (Py_TYPE(obj)->tp_iternext) jpayne@69: #else jpayne@69: #define __Pyx_PyType_GetFlags(tp) (PyType_GetFlags((PyTypeObject *)tp)) jpayne@69: #define __Pyx_PyType_HasFeature(type, feature) PyType_HasFeature(type, feature) jpayne@69: #define __Pyx_PyObject_GetIterNextFunc(obj) PyIter_Next jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: #define __Pyx_SetItemOnTypeDict(tp, k, v) PyObject_GenericSetAttr((PyObject*)tp, k, v) jpayne@69: #else jpayne@69: #define __Pyx_SetItemOnTypeDict(tp, k, v) PyDict_SetItem(tp->tp_dict, k, v) jpayne@69: #endif jpayne@69: #if CYTHON_USE_TYPE_SPECS && PY_VERSION_HEX >= 0x03080000 jpayne@69: #define __Pyx_PyHeapTypeObject_GC_Del(obj) {\ jpayne@69: PyTypeObject *type = Py_TYPE((PyObject*)obj);\ jpayne@69: assert(__Pyx_PyType_HasFeature(type, Py_TPFLAGS_HEAPTYPE));\ jpayne@69: PyObject_GC_Del(obj);\ jpayne@69: Py_DECREF(type);\ jpayne@69: } jpayne@69: #else jpayne@69: #define __Pyx_PyHeapTypeObject_GC_Del(obj) PyObject_GC_Del(obj) jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: #define CYTHON_PEP393_ENABLED 1 jpayne@69: #define __Pyx_PyUnicode_READY(op) (0) jpayne@69: #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GetLength(u) jpayne@69: #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_ReadChar(u, i) jpayne@69: #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((void)u, 1114111U) jpayne@69: #define __Pyx_PyUnicode_KIND(u) ((void)u, (0)) jpayne@69: #define __Pyx_PyUnicode_DATA(u) ((void*)u) jpayne@69: #define __Pyx_PyUnicode_READ(k, d, i) ((void)k, PyUnicode_ReadChar((PyObject*)(d), i)) jpayne@69: #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GetLength(u)) jpayne@69: #elif PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) jpayne@69: #define CYTHON_PEP393_ENABLED 1 jpayne@69: #if PY_VERSION_HEX >= 0x030C0000 jpayne@69: #define __Pyx_PyUnicode_READY(op) (0) jpayne@69: #else jpayne@69: #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\ jpayne@69: 0 : _PyUnicode_Ready((PyObject *)(op))) jpayne@69: #endif jpayne@69: #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) jpayne@69: #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) jpayne@69: #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u) jpayne@69: #define __Pyx_PyUnicode_KIND(u) ((int)PyUnicode_KIND(u)) jpayne@69: #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) jpayne@69: #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) jpayne@69: #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, (Py_UCS4) ch) jpayne@69: #if PY_VERSION_HEX >= 0x030C0000 jpayne@69: #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_LENGTH(u)) jpayne@69: #else jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03090000 jpayne@69: #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : ((PyCompactUnicodeObject *)(u))->wstr_length)) jpayne@69: #else jpayne@69: #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u))) jpayne@69: #endif jpayne@69: #endif jpayne@69: #else jpayne@69: #define CYTHON_PEP393_ENABLED 0 jpayne@69: #define PyUnicode_1BYTE_KIND 1 jpayne@69: #define PyUnicode_2BYTE_KIND 2 jpayne@69: #define PyUnicode_4BYTE_KIND 4 jpayne@69: #define __Pyx_PyUnicode_READY(op) (0) jpayne@69: #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) jpayne@69: #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) jpayne@69: #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535U : 1114111U) jpayne@69: #define __Pyx_PyUnicode_KIND(u) ((int)sizeof(Py_UNICODE)) jpayne@69: #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) jpayne@69: #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) jpayne@69: #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = (Py_UNICODE) ch) jpayne@69: #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u)) jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_PYPY jpayne@69: #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) jpayne@69: #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) jpayne@69: #else jpayne@69: #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) jpayne@69: #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\ jpayne@69: PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_PYPY jpayne@69: #if !defined(PyUnicode_DecodeUnicodeEscape) jpayne@69: #define PyUnicode_DecodeUnicodeEscape(s, size, errors) PyUnicode_Decode(s, size, "unicode_escape", errors) jpayne@69: #endif jpayne@69: #if !defined(PyUnicode_Contains) || (PY_MAJOR_VERSION == 2 && PYPY_VERSION_NUM < 0x07030500) jpayne@69: #undef PyUnicode_Contains jpayne@69: #define PyUnicode_Contains(u, s) PySequence_Contains(u, s) jpayne@69: #endif jpayne@69: #if !defined(PyByteArray_Check) jpayne@69: #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type) jpayne@69: #endif jpayne@69: #if !defined(PyObject_Format) jpayne@69: #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt) jpayne@69: #endif jpayne@69: #endif jpayne@69: #define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyString_Check(b) && !PyString_CheckExact(b)))) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) jpayne@69: #define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyUnicode_Check(b) && !PyUnicode_CheckExact(b)))) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b) jpayne@69: #else jpayne@69: #define __Pyx_PyString_Format(a, b) PyString_Format(a, b) jpayne@69: #endif jpayne@69: #if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII) jpayne@69: #define PyObject_ASCII(o) PyObject_Repr(o) jpayne@69: #endif jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: #define PyBaseString_Type PyUnicode_Type jpayne@69: #define PyStringObject PyUnicodeObject jpayne@69: #define PyString_Type PyUnicode_Type jpayne@69: #define PyString_Check PyUnicode_Check jpayne@69: #define PyString_CheckExact PyUnicode_CheckExact jpayne@69: #ifndef PyObject_Unicode jpayne@69: #define PyObject_Unicode PyObject_Str jpayne@69: #endif jpayne@69: #endif jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj) jpayne@69: #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj) jpayne@69: #else jpayne@69: #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj)) jpayne@69: #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj)) jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON jpayne@69: #define __Pyx_PySequence_ListKeepNew(obj)\ jpayne@69: (likely(PyList_CheckExact(obj) && Py_REFCNT(obj) == 1) ? __Pyx_NewRef(obj) : PySequence_List(obj)) jpayne@69: #else jpayne@69: #define __Pyx_PySequence_ListKeepNew(obj) PySequence_List(obj) jpayne@69: #endif jpayne@69: #ifndef PySet_CheckExact jpayne@69: #define PySet_CheckExact(obj) __Pyx_IS_TYPE(obj, &PySet_Type) jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX >= 0x030900A4 jpayne@69: #define __Pyx_SET_REFCNT(obj, refcnt) Py_SET_REFCNT(obj, refcnt) jpayne@69: #define __Pyx_SET_SIZE(obj, size) Py_SET_SIZE(obj, size) jpayne@69: #else jpayne@69: #define __Pyx_SET_REFCNT(obj, refcnt) Py_REFCNT(obj) = (refcnt) jpayne@69: #define __Pyx_SET_SIZE(obj, size) Py_SIZE(obj) = (size) jpayne@69: #endif jpayne@69: #if CYTHON_ASSUME_SAFE_MACROS jpayne@69: #define __Pyx_PySequence_ITEM(o, i) PySequence_ITEM(o, i) jpayne@69: #define __Pyx_PySequence_SIZE(seq) Py_SIZE(seq) jpayne@69: #define __Pyx_PyTuple_SET_ITEM(o, i, v) (PyTuple_SET_ITEM(o, i, v), (0)) jpayne@69: #define __Pyx_PyList_SET_ITEM(o, i, v) (PyList_SET_ITEM(o, i, v), (0)) jpayne@69: #define __Pyx_PyTuple_GET_SIZE(o) PyTuple_GET_SIZE(o) jpayne@69: #define __Pyx_PyList_GET_SIZE(o) PyList_GET_SIZE(o) jpayne@69: #define __Pyx_PySet_GET_SIZE(o) PySet_GET_SIZE(o) jpayne@69: #define __Pyx_PyBytes_GET_SIZE(o) PyBytes_GET_SIZE(o) jpayne@69: #define __Pyx_PyByteArray_GET_SIZE(o) PyByteArray_GET_SIZE(o) jpayne@69: #else jpayne@69: #define __Pyx_PySequence_ITEM(o, i) PySequence_GetItem(o, i) jpayne@69: #define __Pyx_PySequence_SIZE(seq) PySequence_Size(seq) jpayne@69: #define __Pyx_PyTuple_SET_ITEM(o, i, v) PyTuple_SetItem(o, i, v) jpayne@69: #define __Pyx_PyList_SET_ITEM(o, i, v) PyList_SetItem(o, i, v) jpayne@69: #define __Pyx_PyTuple_GET_SIZE(o) PyTuple_Size(o) jpayne@69: #define __Pyx_PyList_GET_SIZE(o) PyList_Size(o) jpayne@69: #define __Pyx_PySet_GET_SIZE(o) PySet_Size(o) jpayne@69: #define __Pyx_PyBytes_GET_SIZE(o) PyBytes_Size(o) jpayne@69: #define __Pyx_PyByteArray_GET_SIZE(o) PyByteArray_Size(o) jpayne@69: #endif jpayne@69: #if __PYX_LIMITED_VERSION_HEX >= 0x030d00A1 jpayne@69: #define __Pyx_PyImport_AddModuleRef(name) PyImport_AddModuleRef(name) jpayne@69: #else jpayne@69: static CYTHON_INLINE PyObject *__Pyx_PyImport_AddModuleRef(const char *name) { jpayne@69: PyObject *module = PyImport_AddModule(name); jpayne@69: Py_XINCREF(module); jpayne@69: return module; jpayne@69: } jpayne@69: #endif jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: #define PyIntObject PyLongObject jpayne@69: #define PyInt_Type PyLong_Type jpayne@69: #define PyInt_Check(op) PyLong_Check(op) jpayne@69: #define PyInt_CheckExact(op) PyLong_CheckExact(op) jpayne@69: #define __Pyx_Py3Int_Check(op) PyLong_Check(op) jpayne@69: #define __Pyx_Py3Int_CheckExact(op) PyLong_CheckExact(op) jpayne@69: #define PyInt_FromString PyLong_FromString jpayne@69: #define PyInt_FromUnicode PyLong_FromUnicode jpayne@69: #define PyInt_FromLong PyLong_FromLong jpayne@69: #define PyInt_FromSize_t PyLong_FromSize_t jpayne@69: #define PyInt_FromSsize_t PyLong_FromSsize_t jpayne@69: #define PyInt_AsLong PyLong_AsLong jpayne@69: #define PyInt_AS_LONG PyLong_AS_LONG jpayne@69: #define PyInt_AsSsize_t PyLong_AsSsize_t jpayne@69: #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask jpayne@69: #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask jpayne@69: #define PyNumber_Int PyNumber_Long jpayne@69: #else jpayne@69: #define __Pyx_Py3Int_Check(op) (PyLong_Check(op) || PyInt_Check(op)) jpayne@69: #define __Pyx_Py3Int_CheckExact(op) (PyLong_CheckExact(op) || PyInt_CheckExact(op)) jpayne@69: #endif jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: #define PyBoolObject PyLongObject jpayne@69: #endif jpayne@69: #if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY jpayne@69: #ifndef PyUnicode_InternFromString jpayne@69: #define PyUnicode_InternFromString(s) PyUnicode_FromString(s) jpayne@69: #endif jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX < 0x030200A4 jpayne@69: typedef long Py_hash_t; jpayne@69: #define __Pyx_PyInt_FromHash_t PyInt_FromLong jpayne@69: #define __Pyx_PyInt_AsHash_t __Pyx_PyIndex_AsHash_t jpayne@69: #else jpayne@69: #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t jpayne@69: #define __Pyx_PyInt_AsHash_t __Pyx_PyIndex_AsSsize_t jpayne@69: #endif jpayne@69: #if CYTHON_USE_ASYNC_SLOTS jpayne@69: #if PY_VERSION_HEX >= 0x030500B1 jpayne@69: #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods jpayne@69: #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async) jpayne@69: #else jpayne@69: #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved)) jpayne@69: #endif jpayne@69: #else jpayne@69: #define __Pyx_PyType_AsAsync(obj) NULL jpayne@69: #endif jpayne@69: #ifndef __Pyx_PyAsyncMethodsStruct jpayne@69: typedef struct { jpayne@69: unaryfunc am_await; jpayne@69: unaryfunc am_aiter; jpayne@69: unaryfunc am_anext; jpayne@69: } __Pyx_PyAsyncMethodsStruct; jpayne@69: #endif jpayne@69: jpayne@69: #if defined(_WIN32) || defined(WIN32) || defined(MS_WINDOWS) jpayne@69: #if !defined(_USE_MATH_DEFINES) jpayne@69: #define _USE_MATH_DEFINES jpayne@69: #endif jpayne@69: #endif jpayne@69: #include jpayne@69: #ifdef NAN jpayne@69: #define __PYX_NAN() ((float) NAN) jpayne@69: #else jpayne@69: static CYTHON_INLINE float __PYX_NAN() { jpayne@69: float value; jpayne@69: memset(&value, 0xFF, sizeof(value)); jpayne@69: return value; jpayne@69: } jpayne@69: #endif jpayne@69: #if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL) jpayne@69: #define __Pyx_truncl trunc jpayne@69: #else jpayne@69: #define __Pyx_truncl truncl jpayne@69: #endif jpayne@69: jpayne@69: #define __PYX_MARK_ERR_POS(f_index, lineno) \ jpayne@69: { __pyx_filename = __pyx_f[f_index]; (void)__pyx_filename; __pyx_lineno = lineno; (void)__pyx_lineno; __pyx_clineno = __LINE__; (void)__pyx_clineno; } jpayne@69: #define __PYX_ERR(f_index, lineno, Ln_error) \ jpayne@69: { __PYX_MARK_ERR_POS(f_index, lineno) goto Ln_error; } jpayne@69: jpayne@69: #ifdef CYTHON_EXTERN_C jpayne@69: #undef __PYX_EXTERN_C jpayne@69: #define __PYX_EXTERN_C CYTHON_EXTERN_C jpayne@69: #elif defined(__PYX_EXTERN_C) jpayne@69: #ifdef _MSC_VER jpayne@69: #pragma message ("Please do not define the '__PYX_EXTERN_C' macro externally. Use 'CYTHON_EXTERN_C' instead.") jpayne@69: #else jpayne@69: #warning Please do not define the '__PYX_EXTERN_C' macro externally. Use 'CYTHON_EXTERN_C' instead. jpayne@69: #endif jpayne@69: #else jpayne@69: #ifdef __cplusplus jpayne@69: #define __PYX_EXTERN_C extern "C" jpayne@69: #else jpayne@69: #define __PYX_EXTERN_C extern jpayne@69: #endif jpayne@69: #endif jpayne@69: jpayne@69: #define __PYX_HAVE__pysam__libcsamfile jpayne@69: #define __PYX_HAVE_API__pysam__libcsamfile jpayne@69: /* Early includes */ jpayne@69: #include jpayne@69: #include jpayne@69: #include jpayne@69: #include jpayne@69: #include jpayne@69: #include "pythread.h" jpayne@69: jpayne@69: #if CYTHON_COMPILING_IN_PYPY jpayne@69: #ifdef _MSC_VER jpayne@69: #pragma message ("This module uses CPython specific internals of 'array.array', which are not available in PyPy.") jpayne@69: #else jpayne@69: #warning This module uses CPython specific internals of 'array.array', which are not available in PyPy. jpayne@69: #endif jpayne@69: #endif jpayne@69: jpayne@69: #include jpayne@69: #include "stdarg.h" jpayne@69: #include "htslib/kstring.h" jpayne@69: #include "htslib_util.h" jpayne@69: #include "htslib/hfile.h" jpayne@69: #include "htslib/bgzf.h" jpayne@69: #include "htslib/hts.h" jpayne@69: #include "htslib/sam.h" jpayne@69: #include "htslib/faidx.h" jpayne@69: #include "htslib/tbx.h" jpayne@69: #include "htslib/vcf.h" jpayne@69: #include "htslib/vcfutils.h" jpayne@69: #include "htslib/cram.h" jpayne@69: #include "pysam_stream.h" jpayne@69: #ifdef _OPENMP jpayne@69: #include jpayne@69: #endif /* _OPENMP */ jpayne@69: jpayne@69: #if defined(PYREX_WITHOUT_ASSERTIONS) && !defined(CYTHON_WITHOUT_ASSERTIONS) jpayne@69: #define CYTHON_WITHOUT_ASSERTIONS jpayne@69: #endif jpayne@69: jpayne@69: typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding; jpayne@69: const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; jpayne@69: jpayne@69: #define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 jpayne@69: #define __PYX_DEFAULT_STRING_ENCODING_IS_UTF8 0 jpayne@69: #define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT (PY_MAJOR_VERSION >= 3 && __PYX_DEFAULT_STRING_ENCODING_IS_UTF8) jpayne@69: #define __PYX_DEFAULT_STRING_ENCODING "" jpayne@69: #define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString jpayne@69: #define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize jpayne@69: #define __Pyx_uchar_cast(c) ((unsigned char)c) jpayne@69: #define __Pyx_long_cast(x) ((long)x) jpayne@69: #define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\ jpayne@69: (sizeof(type) < sizeof(Py_ssize_t)) ||\ jpayne@69: (sizeof(type) > sizeof(Py_ssize_t) &&\ jpayne@69: likely(v < (type)PY_SSIZE_T_MAX ||\ jpayne@69: v == (type)PY_SSIZE_T_MAX) &&\ jpayne@69: (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\ jpayne@69: v == (type)PY_SSIZE_T_MIN))) ||\ jpayne@69: (sizeof(type) == sizeof(Py_ssize_t) &&\ jpayne@69: (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\ jpayne@69: v == (type)PY_SSIZE_T_MAX))) ) jpayne@69: static CYTHON_INLINE int __Pyx_is_valid_index(Py_ssize_t i, Py_ssize_t limit) { jpayne@69: return (size_t) i < (size_t) limit; jpayne@69: } jpayne@69: #if defined (__cplusplus) && __cplusplus >= 201103L jpayne@69: #include jpayne@69: #define __Pyx_sst_abs(value) std::abs(value) jpayne@69: #elif SIZEOF_INT >= SIZEOF_SIZE_T jpayne@69: #define __Pyx_sst_abs(value) abs(value) jpayne@69: #elif SIZEOF_LONG >= SIZEOF_SIZE_T jpayne@69: #define __Pyx_sst_abs(value) labs(value) jpayne@69: #elif defined (_MSC_VER) jpayne@69: #define __Pyx_sst_abs(value) ((Py_ssize_t)_abs64(value)) jpayne@69: #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L jpayne@69: #define __Pyx_sst_abs(value) llabs(value) jpayne@69: #elif defined (__GNUC__) jpayne@69: #define __Pyx_sst_abs(value) __builtin_llabs(value) jpayne@69: #else jpayne@69: #define __Pyx_sst_abs(value) ((value<0) ? -value : value) jpayne@69: #endif jpayne@69: static CYTHON_INLINE Py_ssize_t __Pyx_ssize_strlen(const char *s); jpayne@69: static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*); jpayne@69: static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyByteArray_FromString(const char*); jpayne@69: #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) jpayne@69: #define __Pyx_PyBytes_FromString PyBytes_FromString jpayne@69: #define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString jpayne@69: #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize jpayne@69: #else jpayne@69: #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString jpayne@69: #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize jpayne@69: #endif jpayne@69: #define __Pyx_PyBytes_AsWritableString(s) ((char*) PyBytes_AS_STRING(s)) jpayne@69: #define __Pyx_PyBytes_AsWritableSString(s) ((signed char*) PyBytes_AS_STRING(s)) jpayne@69: #define __Pyx_PyBytes_AsWritableUString(s) ((unsigned char*) PyBytes_AS_STRING(s)) jpayne@69: #define __Pyx_PyBytes_AsString(s) ((const char*) PyBytes_AS_STRING(s)) jpayne@69: #define __Pyx_PyBytes_AsSString(s) ((const signed char*) PyBytes_AS_STRING(s)) jpayne@69: #define __Pyx_PyBytes_AsUString(s) ((const unsigned char*) PyBytes_AS_STRING(s)) jpayne@69: #define __Pyx_PyObject_AsWritableString(s) ((char*)(__pyx_uintptr_t) __Pyx_PyObject_AsString(s)) jpayne@69: #define __Pyx_PyObject_AsWritableSString(s) ((signed char*)(__pyx_uintptr_t) __Pyx_PyObject_AsString(s)) jpayne@69: #define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*)(__pyx_uintptr_t) __Pyx_PyObject_AsString(s)) jpayne@69: #define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s)) jpayne@69: #define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s)) jpayne@69: #define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) jpayne@69: #define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) jpayne@69: #define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) jpayne@69: #define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s) jpayne@69: #define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s) jpayne@69: #define __Pyx_PyUnicode_FromOrdinal(o) PyUnicode_FromOrdinal((int)o) jpayne@69: #define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode jpayne@69: #define __Pyx_NewRef(obj) (Py_INCREF(obj), obj) jpayne@69: #define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None) jpayne@69: static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b); jpayne@69: static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); jpayne@69: static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject*); jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x); jpayne@69: #define __Pyx_PySequence_Tuple(obj)\ jpayne@69: (likely(PyTuple_CheckExact(obj)) ? __Pyx_NewRef(obj) : PySequence_Tuple(obj)) jpayne@69: static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); jpayne@69: static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); jpayne@69: static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject*); jpayne@69: #if CYTHON_ASSUME_SAFE_MACROS jpayne@69: #define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) jpayne@69: #else jpayne@69: #define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) jpayne@69: #endif jpayne@69: #define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: #define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x)) jpayne@69: #else jpayne@69: #define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x)) jpayne@69: #endif jpayne@69: #if CYTHON_USE_PYLONG_INTERNALS jpayne@69: #if PY_VERSION_HEX >= 0x030C00A7 jpayne@69: #ifndef _PyLong_SIGN_MASK jpayne@69: #define _PyLong_SIGN_MASK 3 jpayne@69: #endif jpayne@69: #ifndef _PyLong_NON_SIZE_BITS jpayne@69: #define _PyLong_NON_SIZE_BITS 3 jpayne@69: #endif jpayne@69: #define __Pyx_PyLong_Sign(x) (((PyLongObject*)x)->long_value.lv_tag & _PyLong_SIGN_MASK) jpayne@69: #define __Pyx_PyLong_IsNeg(x) ((__Pyx_PyLong_Sign(x) & 2) != 0) jpayne@69: #define __Pyx_PyLong_IsNonNeg(x) (!__Pyx_PyLong_IsNeg(x)) jpayne@69: #define __Pyx_PyLong_IsZero(x) (__Pyx_PyLong_Sign(x) & 1) jpayne@69: #define __Pyx_PyLong_IsPos(x) (__Pyx_PyLong_Sign(x) == 0) jpayne@69: #define __Pyx_PyLong_CompactValueUnsigned(x) (__Pyx_PyLong_Digits(x)[0]) jpayne@69: #define __Pyx_PyLong_DigitCount(x) ((Py_ssize_t) (((PyLongObject*)x)->long_value.lv_tag >> _PyLong_NON_SIZE_BITS)) jpayne@69: #define __Pyx_PyLong_SignedDigitCount(x)\ jpayne@69: ((1 - (Py_ssize_t) __Pyx_PyLong_Sign(x)) * __Pyx_PyLong_DigitCount(x)) jpayne@69: #if defined(PyUnstable_Long_IsCompact) && defined(PyUnstable_Long_CompactValue) jpayne@69: #define __Pyx_PyLong_IsCompact(x) PyUnstable_Long_IsCompact((PyLongObject*) x) jpayne@69: #define __Pyx_PyLong_CompactValue(x) PyUnstable_Long_CompactValue((PyLongObject*) x) jpayne@69: #else jpayne@69: #define __Pyx_PyLong_IsCompact(x) (((PyLongObject*)x)->long_value.lv_tag < (2 << _PyLong_NON_SIZE_BITS)) jpayne@69: #define __Pyx_PyLong_CompactValue(x) ((1 - (Py_ssize_t) __Pyx_PyLong_Sign(x)) * (Py_ssize_t) __Pyx_PyLong_Digits(x)[0]) jpayne@69: #endif jpayne@69: typedef Py_ssize_t __Pyx_compact_pylong; jpayne@69: typedef size_t __Pyx_compact_upylong; jpayne@69: #else jpayne@69: #define __Pyx_PyLong_IsNeg(x) (Py_SIZE(x) < 0) jpayne@69: #define __Pyx_PyLong_IsNonNeg(x) (Py_SIZE(x) >= 0) jpayne@69: #define __Pyx_PyLong_IsZero(x) (Py_SIZE(x) == 0) jpayne@69: #define __Pyx_PyLong_IsPos(x) (Py_SIZE(x) > 0) jpayne@69: #define __Pyx_PyLong_CompactValueUnsigned(x) ((Py_SIZE(x) == 0) ? 0 : __Pyx_PyLong_Digits(x)[0]) jpayne@69: #define __Pyx_PyLong_DigitCount(x) __Pyx_sst_abs(Py_SIZE(x)) jpayne@69: #define __Pyx_PyLong_SignedDigitCount(x) Py_SIZE(x) jpayne@69: #define __Pyx_PyLong_IsCompact(x) (Py_SIZE(x) == 0 || Py_SIZE(x) == 1 || Py_SIZE(x) == -1) jpayne@69: #define __Pyx_PyLong_CompactValue(x)\ jpayne@69: ((Py_SIZE(x) == 0) ? (sdigit) 0 : ((Py_SIZE(x) < 0) ? -(sdigit)__Pyx_PyLong_Digits(x)[0] : (sdigit)__Pyx_PyLong_Digits(x)[0])) jpayne@69: typedef sdigit __Pyx_compact_pylong; jpayne@69: typedef digit __Pyx_compact_upylong; jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX >= 0x030C00A5 jpayne@69: #define __Pyx_PyLong_Digits(x) (((PyLongObject*)x)->long_value.ob_digit) jpayne@69: #else jpayne@69: #define __Pyx_PyLong_Digits(x) (((PyLongObject*)x)->ob_digit) jpayne@69: #endif jpayne@69: #endif jpayne@69: #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII jpayne@69: #include jpayne@69: static int __Pyx_sys_getdefaultencoding_not_ascii; jpayne@69: static int __Pyx_init_sys_getdefaultencoding_params(void) { jpayne@69: PyObject* sys; jpayne@69: PyObject* default_encoding = NULL; jpayne@69: PyObject* ascii_chars_u = NULL; jpayne@69: PyObject* ascii_chars_b = NULL; jpayne@69: const char* default_encoding_c; jpayne@69: sys = PyImport_ImportModule("sys"); jpayne@69: if (!sys) goto bad; jpayne@69: default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL); jpayne@69: Py_DECREF(sys); jpayne@69: if (!default_encoding) goto bad; jpayne@69: default_encoding_c = PyBytes_AsString(default_encoding); jpayne@69: if (!default_encoding_c) goto bad; jpayne@69: if (strcmp(default_encoding_c, "ascii") == 0) { jpayne@69: __Pyx_sys_getdefaultencoding_not_ascii = 0; jpayne@69: } else { jpayne@69: char ascii_chars[128]; jpayne@69: int c; jpayne@69: for (c = 0; c < 128; c++) { jpayne@69: ascii_chars[c] = (char) c; jpayne@69: } jpayne@69: __Pyx_sys_getdefaultencoding_not_ascii = 1; jpayne@69: ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL); jpayne@69: if (!ascii_chars_u) goto bad; jpayne@69: ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL); jpayne@69: if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) { jpayne@69: PyErr_Format( jpayne@69: PyExc_ValueError, jpayne@69: "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.", jpayne@69: default_encoding_c); jpayne@69: goto bad; jpayne@69: } jpayne@69: Py_DECREF(ascii_chars_u); jpayne@69: Py_DECREF(ascii_chars_b); jpayne@69: } jpayne@69: Py_DECREF(default_encoding); jpayne@69: return 0; jpayne@69: bad: jpayne@69: Py_XDECREF(default_encoding); jpayne@69: Py_XDECREF(ascii_chars_u); jpayne@69: Py_XDECREF(ascii_chars_b); jpayne@69: return -1; jpayne@69: } jpayne@69: #endif jpayne@69: #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3 jpayne@69: #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL) jpayne@69: #else jpayne@69: #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) jpayne@69: #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT jpayne@69: #include jpayne@69: static char* __PYX_DEFAULT_STRING_ENCODING; jpayne@69: static int __Pyx_init_sys_getdefaultencoding_params(void) { jpayne@69: PyObject* sys; jpayne@69: PyObject* default_encoding = NULL; jpayne@69: char* default_encoding_c; jpayne@69: sys = PyImport_ImportModule("sys"); jpayne@69: if (!sys) goto bad; jpayne@69: default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); jpayne@69: Py_DECREF(sys); jpayne@69: if (!default_encoding) goto bad; jpayne@69: default_encoding_c = PyBytes_AsString(default_encoding); jpayne@69: if (!default_encoding_c) goto bad; jpayne@69: __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c) + 1); jpayne@69: if (!__PYX_DEFAULT_STRING_ENCODING) goto bad; jpayne@69: strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c); jpayne@69: Py_DECREF(default_encoding); jpayne@69: return 0; jpayne@69: bad: jpayne@69: Py_XDECREF(default_encoding); jpayne@69: return -1; jpayne@69: } jpayne@69: #endif jpayne@69: #endif jpayne@69: jpayne@69: jpayne@69: /* Test for GCC > 2.95 */ jpayne@69: #if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))) jpayne@69: #define likely(x) __builtin_expect(!!(x), 1) jpayne@69: #define unlikely(x) __builtin_expect(!!(x), 0) jpayne@69: #else /* !__GNUC__ or GCC < 2.95 */ jpayne@69: #define likely(x) (x) jpayne@69: #define unlikely(x) (x) jpayne@69: #endif /* __GNUC__ */ jpayne@69: static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; } jpayne@69: jpayne@69: #if !CYTHON_USE_MODULE_STATE jpayne@69: static PyObject *__pyx_m = NULL; jpayne@69: #endif jpayne@69: static int __pyx_lineno; jpayne@69: static int __pyx_clineno = 0; jpayne@69: static const char * __pyx_cfilenm = __FILE__; jpayne@69: static const char *__pyx_filename; jpayne@69: jpayne@69: /* #### Code section: filename_table ### */ jpayne@69: jpayne@69: static const char *__pyx_f[] = { jpayne@69: "", jpayne@69: "contextvars.pxd", jpayne@69: "array.pxd", jpayne@69: "pysam/libcsamfile.pyx", jpayne@69: "type.pxd", jpayne@69: "bool.pxd", jpayne@69: "complex.pxd", jpayne@69: "pysam/libchtslib.pxd", jpayne@69: "pysam/libcfaidx.pxd", jpayne@69: "pysam/libcalignedsegment.pxd", jpayne@69: "pysam/libcalignmentfile.pxd", jpayne@69: }; jpayne@69: /* #### Code section: utility_code_proto_before_types ### */ jpayne@69: /* ForceInitThreads.proto */ jpayne@69: #ifndef __PYX_FORCE_INIT_THREADS jpayne@69: #define __PYX_FORCE_INIT_THREADS 0 jpayne@69: #endif jpayne@69: jpayne@69: /* #### Code section: numeric_typedefs ### */ jpayne@69: /* #### Code section: complex_type_declarations ### */ jpayne@69: /* #### Code section: type_declarations ### */ jpayne@69: jpayne@69: /*--- Type declarations ---*/ jpayne@69: #ifndef _ARRAYARRAY_H jpayne@69: struct arrayobject; jpayne@69: typedef struct arrayobject arrayobject; jpayne@69: #endif jpayne@69: struct __pyx_obj_5pysam_10libchtslib_HTSFile; jpayne@69: struct __pyx_obj_5pysam_9libcfaidx_FastaFile; jpayne@69: struct __pyx_obj_5pysam_9libcfaidx_FastqProxy; jpayne@69: struct __pyx_obj_5pysam_9libcfaidx_FastxRecord; jpayne@69: struct __pyx_obj_5pysam_9libcfaidx_FastxFile; jpayne@69: struct __pyx_obj_5pysam_9libcfaidx_FastqFile; jpayne@69: struct __pyx_obj_5pysam_9libcfaidx_Fastafile; jpayne@69: struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment; jpayne@69: struct __pyx_obj_5pysam_18libcalignedsegment_PileupColumn; jpayne@69: struct __pyx_obj_5pysam_18libcalignedsegment_PileupRead; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentHeader; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRow; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowRegion; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowHead; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowAll; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowAllRefs; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowSelection; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnRegion; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnAllRefs; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnAll; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IndexedReads; jpayne@69: struct __pyx_obj_5pysam_11libcsamfile_AlignedRead; jpayne@69: struct __pyx_obj_5pysam_11libcsamfile_Samfile; jpayne@69: struct __pyx_opt_args_7cpython_11contextvars_get_value; jpayne@69: struct __pyx_opt_args_7cpython_11contextvars_get_value_no_default; jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":112 jpayne@69: * jpayne@69: * jpayne@69: * cdef inline object get_value(var, default_value=None): # <<<<<<<<<<<<<< jpayne@69: * """Return a new reference to the value of the context variable, jpayne@69: * or the default value of the context variable, jpayne@69: */ jpayne@69: struct __pyx_opt_args_7cpython_11contextvars_get_value { jpayne@69: int __pyx_n; jpayne@69: PyObject *default_value; jpayne@69: }; jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":129 jpayne@69: * jpayne@69: * jpayne@69: * cdef inline object get_value_no_default(var, default_value=None): # <<<<<<<<<<<<<< jpayne@69: * """Return a new reference to the value of the context variable, jpayne@69: * or the provided default value if no such value was found. jpayne@69: */ jpayne@69: struct __pyx_opt_args_7cpython_11contextvars_get_value_no_default { jpayne@69: int __pyx_n; jpayne@69: PyObject *default_value; jpayne@69: }; jpayne@69: struct __pyx_opt_args_5pysam_9libcfaidx_10FastqProxy_get_quality_array; jpayne@69: struct __pyx_opt_args_5pysam_9libcfaidx_11FastxRecord_get_quality_array; jpayne@69: jpayne@69: /* "pysam/libcfaidx.pxd":50 jpayne@69: * cdef cython.str to_string(self) jpayne@69: * cdef cython.str tostring(self) jpayne@69: * cpdef array.array get_quality_array(self, int offset=*) # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * jpayne@69: */ jpayne@69: struct __pyx_opt_args_5pysam_9libcfaidx_10FastqProxy_get_quality_array { jpayne@69: int __pyx_n; jpayne@69: int offset; jpayne@69: }; jpayne@69: jpayne@69: /* "pysam/libcfaidx.pxd":60 jpayne@69: * cdef cython.str to_string(self) jpayne@69: * cdef cython.str tostring(self) jpayne@69: * cpdef array.array get_quality_array(self, int offset=*) # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * cdef class FastxFile: jpayne@69: */ jpayne@69: struct __pyx_opt_args_5pysam_9libcfaidx_11FastxRecord_get_quality_array { jpayne@69: int __pyx_n; jpayne@69: int offset; jpayne@69: }; jpayne@69: struct __pyx_opt_args_5pysam_18libcalignedsegment_14AlignedSegment_set_tag; jpayne@69: struct __pyx_opt_args_5pysam_18libcalignedsegment_14AlignedSegment_get_tag; jpayne@69: struct __pyx_opt_args_5pysam_18libcalignedsegment_14AlignedSegment_tostring; jpayne@69: jpayne@69: /* "pysam/libcalignedsegment.pxd":31 jpayne@69: * jpayne@69: * from pysam.libcalignmentfile cimport AlignmentFile, AlignmentHeader jpayne@69: * ctypedef AlignmentFile AlignmentFile_t # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * jpayne@69: */ jpayne@69: typedef struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile *__pyx_t_5pysam_18libcalignedsegment_AlignmentFile_t; jpayne@69: jpayne@69: /* "pysam/libcalignedsegment.pxd":51 jpayne@69: * # add an alignment tag with value to the AlignedSegment jpayne@69: * # an existing tag of the same name will be replaced. jpayne@69: * cpdef set_tag(self, tag, value, value_type=?, replace=?) # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * # get an alignment tag from the AlignedSegment jpayne@69: */ jpayne@69: struct __pyx_opt_args_5pysam_18libcalignedsegment_14AlignedSegment_set_tag { jpayne@69: int __pyx_n; jpayne@69: PyObject *value_type; jpayne@69: PyObject *replace; jpayne@69: }; jpayne@69: jpayne@69: /* "pysam/libcalignedsegment.pxd":54 jpayne@69: * jpayne@69: * # get an alignment tag from the AlignedSegment jpayne@69: * cpdef get_tag(self, tag, with_value_type=?) # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * # return true if tag exists jpayne@69: */ jpayne@69: struct __pyx_opt_args_5pysam_18libcalignedsegment_14AlignedSegment_get_tag { jpayne@69: int __pyx_n; jpayne@69: PyObject *with_value_type; jpayne@69: }; jpayne@69: jpayne@69: /* "pysam/libcalignedsegment.pxd":63 jpayne@69: * jpayne@69: * # returns a valid sam alignment string (deprecated) jpayne@69: * cpdef tostring(self, htsfile=*) # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * jpayne@69: */ jpayne@69: struct __pyx_opt_args_5pysam_18libcalignedsegment_14AlignedSegment_tostring { jpayne@69: int __pyx_n; jpayne@69: PyObject *htsfile; jpayne@69: }; jpayne@69: struct __pyx_t_5pysam_17libcalignmentfile___iterdata; jpayne@69: typedef struct __pyx_t_5pysam_17libcalignmentfile___iterdata __pyx_t_5pysam_17libcalignmentfile___iterdata; jpayne@69: struct __pyx_opt_args_5pysam_17libcalignmentfile_14IteratorColumn__setup_iterator; jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":25 jpayne@69: * # Utility types jpayne@69: * jpayne@69: * ctypedef struct __iterdata: # <<<<<<<<<<<<<< jpayne@69: * htsFile * htsfile jpayne@69: * bam_hdr_t * header jpayne@69: */ jpayne@69: struct __pyx_t_5pysam_17libcalignmentfile___iterdata { jpayne@69: htsFile *htsfile; jpayne@69: bam_hdr_t *header; jpayne@69: hts_itr_t *iter; jpayne@69: faidx_t *fastafile; jpayne@69: int tid; jpayne@69: char *seq; jpayne@69: int seq_len; jpayne@69: int min_mapping_quality; jpayne@69: int flag_require; jpayne@69: int flag_filter; jpayne@69: int compute_baq; jpayne@69: int redo_baq; jpayne@69: int ignore_orphans; jpayne@69: int adjust_capq_threshold; jpayne@69: }; jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":121 jpayne@69: * cdef int cnext(self) jpayne@69: * cdef char * get_sequence(self) jpayne@69: * cdef _setup_iterator(self, # <<<<<<<<<<<<<< jpayne@69: * int tid, jpayne@69: * int start, jpayne@69: */ jpayne@69: struct __pyx_opt_args_5pysam_17libcalignmentfile_14IteratorColumn__setup_iterator { jpayne@69: int __pyx_n; jpayne@69: int multiple_iterators; jpayne@69: }; jpayne@69: jpayne@69: /* "pysam/libchtslib.pxd":2706 jpayne@69: * jpayne@69: * jpayne@69: * cdef class HTSFile(object): # <<<<<<<<<<<<<< jpayne@69: * cdef htsFile *htsfile # pointer to htsFile structure jpayne@69: * cdef int64_t start_offset # BGZF offset of first record jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_10libchtslib_HTSFile { jpayne@69: PyObject_HEAD jpayne@69: struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile *__pyx_vtab; jpayne@69: htsFile *htsfile; jpayne@69: int64_t start_offset; jpayne@69: PyObject *filename; jpayne@69: PyObject *mode; jpayne@69: PyObject *threads; jpayne@69: PyObject *index_filename; jpayne@69: int is_stream; jpayne@69: int is_remote; jpayne@69: int duplicate_filehandle; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcfaidx.pxd":38 jpayne@69: * int * dret) jpayne@69: * jpayne@69: * cdef class FastaFile: # <<<<<<<<<<<<<< jpayne@69: * cdef bint is_remote jpayne@69: * cdef object _filename, _references, _lengths, reference2length jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_9libcfaidx_FastaFile { jpayne@69: PyObject_HEAD jpayne@69: struct __pyx_vtabstruct_5pysam_9libcfaidx_FastaFile *__pyx_vtab; jpayne@69: int is_remote; jpayne@69: PyObject *_filename; jpayne@69: PyObject *_references; jpayne@69: PyObject *_lengths; jpayne@69: PyObject *reference2length; jpayne@69: faidx_t *fastafile; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcfaidx.pxd":46 jpayne@69: * jpayne@69: * jpayne@69: * cdef class FastqProxy: # <<<<<<<<<<<<<< jpayne@69: * cdef kseq_t * _delegate jpayne@69: * cdef cython.str to_string(self) jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_9libcfaidx_FastqProxy { jpayne@69: PyObject_HEAD jpayne@69: struct __pyx_vtabstruct_5pysam_9libcfaidx_FastqProxy *__pyx_vtab; jpayne@69: kseq_t *_delegate; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcfaidx.pxd":53 jpayne@69: * jpayne@69: * jpayne@69: * cdef class FastxRecord: # <<<<<<<<<<<<<< jpayne@69: * """ jpayne@69: * Python container for pysam.libcfaidx.FastqProxy with persistence. jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_9libcfaidx_FastxRecord { jpayne@69: PyObject_HEAD jpayne@69: struct __pyx_vtabstruct_5pysam_9libcfaidx_FastxRecord *__pyx_vtab; jpayne@69: PyObject *comment; jpayne@69: PyObject *quality; jpayne@69: PyObject *sequence; jpayne@69: PyObject *name; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcfaidx.pxd":62 jpayne@69: * cpdef array.array get_quality_array(self, int offset=*) jpayne@69: * jpayne@69: * cdef class FastxFile: # <<<<<<<<<<<<<< jpayne@69: * cdef object _filename jpayne@69: * cdef BGZF * fastqfile jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_9libcfaidx_FastxFile { jpayne@69: PyObject_HEAD jpayne@69: struct __pyx_vtabstruct_5pysam_9libcfaidx_FastxFile *__pyx_vtab; jpayne@69: PyObject *_filename; jpayne@69: BGZF *fastqfile; jpayne@69: kseq_t *entry; jpayne@69: int persist; jpayne@69: int is_remote; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcfaidx.pxd":74 jpayne@69: * jpayne@69: * # Compatibility Layer for pysam 0.8.1 jpayne@69: * cdef class FastqFile(FastxFile): # <<<<<<<<<<<<<< jpayne@69: * pass jpayne@69: * jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_9libcfaidx_FastqFile { jpayne@69: struct __pyx_obj_5pysam_9libcfaidx_FastxFile __pyx_base; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcfaidx.pxd":79 jpayne@69: * jpayne@69: * # Compatibility Layer for pysam < 0.8 jpayne@69: * cdef class Fastafile(FastaFile): # <<<<<<<<<<<<<< jpayne@69: * pass jpayne@69: * jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_9libcfaidx_Fastafile { jpayne@69: struct __pyx_obj_5pysam_9libcfaidx_FastaFile __pyx_base; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignedsegment.pxd":35 jpayne@69: * jpayne@69: * # Note: need to declare all C fields and methods here jpayne@69: * cdef class AlignedSegment: # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * # object that this AlignedSegment represents jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment { jpayne@69: PyObject_HEAD jpayne@69: struct __pyx_vtabstruct_5pysam_18libcalignedsegment_AlignedSegment *__pyx_vtab; jpayne@69: bam1_t *_delegate; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentHeader *header; jpayne@69: PyObject *cache_query_qualities; jpayne@69: PyObject *cache_query_alignment_qualities; jpayne@69: PyObject *cache_query_sequence; jpayne@69: PyObject *cache_query_alignment_sequence; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignedsegment.pxd":66 jpayne@69: * jpayne@69: * jpayne@69: * cdef class PileupColumn: # <<<<<<<<<<<<<< jpayne@69: * cdef const bam_pileup1_t ** plp jpayne@69: * cdef int tid jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_18libcalignedsegment_PileupColumn { jpayne@69: PyObject_HEAD jpayne@69: bam_pileup1_t const **plp; jpayne@69: int tid; jpayne@69: int pos; jpayne@69: int n_pu; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentHeader *header; jpayne@69: uint32_t min_base_quality; jpayne@69: kstring_t buf; jpayne@69: char *reference_sequence; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignedsegment.pxd":76 jpayne@69: * cdef char * reference_sequence jpayne@69: * jpayne@69: * cdef class PileupRead: # <<<<<<<<<<<<<< jpayne@69: * cdef int32_t _qpos jpayne@69: * cdef AlignedSegment _alignment jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_18libcalignedsegment_PileupRead { jpayne@69: PyObject_HEAD jpayne@69: int32_t _qpos; jpayne@69: struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *_alignment; jpayne@69: int _indel; jpayne@69: int _level; jpayne@69: uint32_t _is_del; jpayne@69: uint32_t _is_head; jpayne@69: uint32_t _is_tail; jpayne@69: uint32_t _is_refskip; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":42 jpayne@69: * jpayne@69: * jpayne@69: * cdef class AlignmentHeader(object): # <<<<<<<<<<<<<< jpayne@69: * cdef bam_hdr_t *ptr jpayne@69: * jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentHeader { jpayne@69: PyObject_HEAD jpayne@69: bam_hdr_t *ptr; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":45 jpayne@69: * cdef bam_hdr_t *ptr jpayne@69: * jpayne@69: * cdef class AlignmentFile(HTSFile): # <<<<<<<<<<<<<< jpayne@69: * cdef readonly object reference_filename jpayne@69: * cdef readonly AlignmentHeader header jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile { jpayne@69: struct __pyx_obj_5pysam_10libchtslib_HTSFile __pyx_base; jpayne@69: PyObject *reference_filename; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentHeader *header; jpayne@69: hts_idx_t *index; jpayne@69: bam1_t *b; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":62 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IteratorRow: # <<<<<<<<<<<<<< jpayne@69: * cdef int retval jpayne@69: * cdef bam1_t * b jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRow { jpayne@69: PyObject_HEAD jpayne@69: int retval; jpayne@69: bam1_t *b; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile *samfile; jpayne@69: htsFile *htsfile; jpayne@69: hts_idx_t *index; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentHeader *header; jpayne@69: int owns_samfile; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":72 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IteratorRowRegion(IteratorRow): # <<<<<<<<<<<<<< jpayne@69: * cdef hts_itr_t * iter jpayne@69: * cdef bam1_t * getCurrent(self) jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowRegion { jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRow __pyx_base; jpayne@69: struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowRegion *__pyx_vtab; jpayne@69: hts_itr_t *iter; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":78 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IteratorRowHead(IteratorRow): # <<<<<<<<<<<<<< jpayne@69: * cdef int max_rows jpayne@69: * cdef int current_row jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowHead { jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRow __pyx_base; jpayne@69: struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowHead *__pyx_vtab; jpayne@69: int max_rows; jpayne@69: int current_row; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":85 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IteratorRowAll(IteratorRow): # <<<<<<<<<<<<<< jpayne@69: * cdef bam1_t * getCurrent(self) jpayne@69: * cdef int cnext(self) jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowAll { jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRow __pyx_base; jpayne@69: struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowAll *__pyx_vtab; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":90 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IteratorRowAllRefs(IteratorRow): # <<<<<<<<<<<<<< jpayne@69: * cdef int tid jpayne@69: * cdef IteratorRowRegion rowiter jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowAllRefs { jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRow __pyx_base; jpayne@69: int tid; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowRegion *rowiter; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":95 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IteratorRowSelection(IteratorRow): # <<<<<<<<<<<<<< jpayne@69: * cdef int current_pos jpayne@69: * cdef positions jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowSelection { jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRow __pyx_base; jpayne@69: struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowSelection *__pyx_vtab; jpayne@69: int current_pos; jpayne@69: PyObject *positions; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":102 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IteratorColumn: # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * # result of the last plbuf_push jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn { jpayne@69: PyObject_HEAD jpayne@69: struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumn *__pyx_vtab; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowRegion *iter; jpayne@69: int tid; jpayne@69: int pos; jpayne@69: int n_plp; jpayne@69: uint32_t min_base_quality; jpayne@69: bam_pileup1_t const *plp; jpayne@69: bam_mplp_t pileup_iter; jpayne@69: __pyx_t_5pysam_17libcalignmentfile___iterdata iterdata; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile *samfile; jpayne@69: struct __pyx_obj_5pysam_9libcfaidx_FastaFile *fastafile; jpayne@69: PyObject *stepper; jpayne@69: int max_depth; jpayne@69: int ignore_overlaps; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":134 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IteratorColumnRegion(IteratorColumn): # <<<<<<<<<<<<<< jpayne@69: * cdef int start jpayne@69: * cdef int stop jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnRegion { jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn __pyx_base; jpayne@69: int start; jpayne@69: int stop; jpayne@69: int truncate; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":140 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IteratorColumnAllRefs(IteratorColumn): # <<<<<<<<<<<<<< jpayne@69: * pass jpayne@69: * jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnAllRefs { jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn __pyx_base; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":144 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IteratorColumnAll(IteratorColumn): # <<<<<<<<<<<<<< jpayne@69: * pass jpayne@69: * jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnAll { jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn __pyx_base; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":148 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IndexedReads: # <<<<<<<<<<<<<< jpayne@69: * cdef AlignmentFile samfile jpayne@69: * cdef htsFile * htsfile jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_IndexedReads { jpayne@69: PyObject_HEAD jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile *samfile; jpayne@69: htsFile *htsfile; jpayne@69: PyObject *index; jpayne@69: int owns_samfile; jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentHeader *header; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcsamfile.pxd":10 jpayne@69: * from pysam.libchtslib cimport * jpayne@69: * jpayne@69: * cdef class AlignedRead(AlignedSegment): # <<<<<<<<<<<<<< jpayne@69: * pass jpayne@69: * jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_11libcsamfile_AlignedRead { jpayne@69: struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment __pyx_base; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcsamfile.pxd":13 jpayne@69: * pass jpayne@69: * jpayne@69: * cdef class Samfile(AlignmentFile): # <<<<<<<<<<<<<< jpayne@69: * pass jpayne@69: * jpayne@69: */ jpayne@69: struct __pyx_obj_5pysam_11libcsamfile_Samfile { jpayne@69: struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile __pyx_base; jpayne@69: }; jpayne@69: jpayne@69: jpayne@69: jpayne@69: /* "pysam/libchtslib.pxd":2706 jpayne@69: * jpayne@69: * jpayne@69: * cdef class HTSFile(object): # <<<<<<<<<<<<<< jpayne@69: * cdef htsFile *htsfile # pointer to htsFile structure jpayne@69: * cdef int64_t start_offset # BGZF offset of first record jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile { jpayne@69: htsFile *(*_open_htsfile)(struct __pyx_obj_5pysam_10libchtslib_HTSFile *); jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile *__pyx_vtabptr_5pysam_10libchtslib_HTSFile; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcfaidx.pxd":38 jpayne@69: * int * dret) jpayne@69: * jpayne@69: * cdef class FastaFile: # <<<<<<<<<<<<<< jpayne@69: * cdef bint is_remote jpayne@69: * cdef object _filename, _references, _lengths, reference2length jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_9libcfaidx_FastaFile { jpayne@69: char *(*_fetch)(struct __pyx_obj_5pysam_9libcfaidx_FastaFile *, char *, int, int, int *); jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_9libcfaidx_FastaFile *__pyx_vtabptr_5pysam_9libcfaidx_FastaFile; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcfaidx.pxd":46 jpayne@69: * jpayne@69: * jpayne@69: * cdef class FastqProxy: # <<<<<<<<<<<<<< jpayne@69: * cdef kseq_t * _delegate jpayne@69: * cdef cython.str to_string(self) jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_9libcfaidx_FastqProxy { jpayne@69: PyObject *(*to_string)(struct __pyx_obj_5pysam_9libcfaidx_FastqProxy *); jpayne@69: PyObject *(*tostring)(struct __pyx_obj_5pysam_9libcfaidx_FastqProxy *); jpayne@69: arrayobject *(*get_quality_array)(struct __pyx_obj_5pysam_9libcfaidx_FastqProxy *, int __pyx_skip_dispatch, struct __pyx_opt_args_5pysam_9libcfaidx_10FastqProxy_get_quality_array *__pyx_optional_args); jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_9libcfaidx_FastqProxy *__pyx_vtabptr_5pysam_9libcfaidx_FastqProxy; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcfaidx.pxd":53 jpayne@69: * jpayne@69: * jpayne@69: * cdef class FastxRecord: # <<<<<<<<<<<<<< jpayne@69: * """ jpayne@69: * Python container for pysam.libcfaidx.FastqProxy with persistence. jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_9libcfaidx_FastxRecord { jpayne@69: PyObject *(*to_string)(struct __pyx_obj_5pysam_9libcfaidx_FastxRecord *); jpayne@69: PyObject *(*tostring)(struct __pyx_obj_5pysam_9libcfaidx_FastxRecord *); jpayne@69: arrayobject *(*get_quality_array)(struct __pyx_obj_5pysam_9libcfaidx_FastxRecord *, int __pyx_skip_dispatch, struct __pyx_opt_args_5pysam_9libcfaidx_11FastxRecord_get_quality_array *__pyx_optional_args); jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_9libcfaidx_FastxRecord *__pyx_vtabptr_5pysam_9libcfaidx_FastxRecord; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcfaidx.pxd":62 jpayne@69: * cpdef array.array get_quality_array(self, int offset=*) jpayne@69: * jpayne@69: * cdef class FastxFile: # <<<<<<<<<<<<<< jpayne@69: * cdef object _filename jpayne@69: * cdef BGZF * fastqfile jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_9libcfaidx_FastxFile { jpayne@69: kseq_t *(*getCurrent)(struct __pyx_obj_5pysam_9libcfaidx_FastxFile *); jpayne@69: int (*cnext)(struct __pyx_obj_5pysam_9libcfaidx_FastxFile *); jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_9libcfaidx_FastxFile *__pyx_vtabptr_5pysam_9libcfaidx_FastxFile; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcfaidx.pxd":74 jpayne@69: * jpayne@69: * # Compatibility Layer for pysam 0.8.1 jpayne@69: * cdef class FastqFile(FastxFile): # <<<<<<<<<<<<<< jpayne@69: * pass jpayne@69: * jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_9libcfaidx_FastqFile { jpayne@69: struct __pyx_vtabstruct_5pysam_9libcfaidx_FastxFile __pyx_base; jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_9libcfaidx_FastqFile *__pyx_vtabptr_5pysam_9libcfaidx_FastqFile; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcfaidx.pxd":79 jpayne@69: * jpayne@69: * # Compatibility Layer for pysam < 0.8 jpayne@69: * cdef class Fastafile(FastaFile): # <<<<<<<<<<<<<< jpayne@69: * pass jpayne@69: * jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_9libcfaidx_Fastafile { jpayne@69: struct __pyx_vtabstruct_5pysam_9libcfaidx_FastaFile __pyx_base; jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_9libcfaidx_Fastafile *__pyx_vtabptr_5pysam_9libcfaidx_Fastafile; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignedsegment.pxd":35 jpayne@69: * jpayne@69: * # Note: need to declare all C fields and methods here jpayne@69: * cdef class AlignedSegment: # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * # object that this AlignedSegment represents jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_18libcalignedsegment_AlignedSegment { jpayne@69: PyObject *(*set_tag)(struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *, PyObject *, PyObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_5pysam_18libcalignedsegment_14AlignedSegment_set_tag *__pyx_optional_args); jpayne@69: PyObject *(*get_tag)(struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *, PyObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_5pysam_18libcalignedsegment_14AlignedSegment_get_tag *__pyx_optional_args); jpayne@69: PyObject *(*has_tag)(struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *, PyObject *, int __pyx_skip_dispatch); jpayne@69: PyObject *(*to_string)(struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *, int __pyx_skip_dispatch); jpayne@69: PyObject *(*tostring)(struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *, int __pyx_skip_dispatch, struct __pyx_opt_args_5pysam_18libcalignedsegment_14AlignedSegment_tostring *__pyx_optional_args); jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_18libcalignedsegment_AlignedSegment *__pyx_vtabptr_5pysam_18libcalignedsegment_AlignedSegment; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":45 jpayne@69: * cdef bam_hdr_t *ptr jpayne@69: * jpayne@69: * cdef class AlignmentFile(HTSFile): # <<<<<<<<<<<<<< jpayne@69: * cdef readonly object reference_filename jpayne@69: * cdef readonly AlignmentHeader header jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_17libcalignmentfile_AlignmentFile { jpayne@69: struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile __pyx_base; jpayne@69: bam1_t *(*getCurrent)(struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile *); jpayne@69: int (*cnext)(struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile *); jpayne@69: int (*write)(struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile *, struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *, int __pyx_skip_dispatch); jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_17libcalignmentfile_AlignmentFile *__pyx_vtabptr_5pysam_17libcalignmentfile_AlignmentFile; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":72 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IteratorRowRegion(IteratorRow): # <<<<<<<<<<<<<< jpayne@69: * cdef hts_itr_t * iter jpayne@69: * cdef bam1_t * getCurrent(self) jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowRegion { jpayne@69: bam1_t *(*getCurrent)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowRegion *); jpayne@69: int (*cnext)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowRegion *); jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowRegion *__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowRegion; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":78 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IteratorRowHead(IteratorRow): # <<<<<<<<<<<<<< jpayne@69: * cdef int max_rows jpayne@69: * cdef int current_row jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowHead { jpayne@69: bam1_t *(*getCurrent)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowHead *); jpayne@69: int (*cnext)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowHead *); jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowHead *__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowHead; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":85 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IteratorRowAll(IteratorRow): # <<<<<<<<<<<<<< jpayne@69: * cdef bam1_t * getCurrent(self) jpayne@69: * cdef int cnext(self) jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowAll { jpayne@69: bam1_t *(*getCurrent)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowAll *); jpayne@69: int (*cnext)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowAll *); jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowAll *__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowAll; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":95 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IteratorRowSelection(IteratorRow): # <<<<<<<<<<<<<< jpayne@69: * cdef int current_pos jpayne@69: * cdef positions jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowSelection { jpayne@69: bam1_t *(*getCurrent)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowSelection *); jpayne@69: int (*cnext)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowSelection *); jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowSelection *__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowSelection; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":102 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IteratorColumn: # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * # result of the last plbuf_push jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumn { jpayne@69: int (*cnext)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn *); jpayne@69: char *(*get_sequence)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn *); jpayne@69: PyObject *(*_setup_iterator)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn *, int, int, int, struct __pyx_opt_args_5pysam_17libcalignmentfile_14IteratorColumn__setup_iterator *__pyx_optional_args); jpayne@69: PyObject *(*_setup_raw_rest_iterator)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn *); jpayne@69: PyObject *(*reset)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn *, PyObject *, PyObject *, PyObject *); jpayne@69: PyObject *(*_free_pileup_iter)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn *); jpayne@69: char *(*getSequence)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn *); jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumn *__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumn; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":134 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IteratorColumnRegion(IteratorColumn): # <<<<<<<<<<<<<< jpayne@69: * cdef int start jpayne@69: * cdef int stop jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumnRegion { jpayne@69: struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumn __pyx_base; jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumnRegion *__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumnRegion; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":140 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IteratorColumnAllRefs(IteratorColumn): # <<<<<<<<<<<<<< jpayne@69: * pass jpayne@69: * jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumnAllRefs { jpayne@69: struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumn __pyx_base; jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumnAllRefs *__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumnAllRefs; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcalignmentfile.pxd":144 jpayne@69: * jpayne@69: * jpayne@69: * cdef class IteratorColumnAll(IteratorColumn): # <<<<<<<<<<<<<< jpayne@69: * pass jpayne@69: * jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumnAll { jpayne@69: struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumn __pyx_base; jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumnAll *__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumnAll; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcsamfile.pyx":31 jpayne@69: * jpayne@69: * jpayne@69: * cdef class AlignedRead(AlignedSegment): # <<<<<<<<<<<<<< jpayne@69: * '''Deprecated alternative for :class:`~pysam.AlignedSegment` jpayne@69: * jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_11libcsamfile_AlignedRead { jpayne@69: struct __pyx_vtabstruct_5pysam_18libcalignedsegment_AlignedSegment __pyx_base; jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_11libcsamfile_AlignedRead *__pyx_vtabptr_5pysam_11libcsamfile_AlignedRead; jpayne@69: jpayne@69: jpayne@69: /* "pysam/libcsamfile.pyx":23 jpayne@69: * jpayne@69: * jpayne@69: * cdef class Samfile(AlignmentFile): # <<<<<<<<<<<<<< jpayne@69: * '''Deprecated alternative for :class:`~pysam.AlignmentFile` jpayne@69: * jpayne@69: */ jpayne@69: jpayne@69: struct __pyx_vtabstruct_5pysam_11libcsamfile_Samfile { jpayne@69: struct __pyx_vtabstruct_5pysam_17libcalignmentfile_AlignmentFile __pyx_base; jpayne@69: }; jpayne@69: static struct __pyx_vtabstruct_5pysam_11libcsamfile_Samfile *__pyx_vtabptr_5pysam_11libcsamfile_Samfile; jpayne@69: /* #### Code section: utility_code_proto ### */ jpayne@69: jpayne@69: /* --- Runtime support code (head) --- */ jpayne@69: /* Refnanny.proto */ jpayne@69: #ifndef CYTHON_REFNANNY jpayne@69: #define CYTHON_REFNANNY 0 jpayne@69: #endif jpayne@69: #if CYTHON_REFNANNY jpayne@69: typedef struct { jpayne@69: void (*INCREF)(void*, PyObject*, Py_ssize_t); jpayne@69: void (*DECREF)(void*, PyObject*, Py_ssize_t); jpayne@69: void (*GOTREF)(void*, PyObject*, Py_ssize_t); jpayne@69: void (*GIVEREF)(void*, PyObject*, Py_ssize_t); jpayne@69: void* (*SetupContext)(const char*, Py_ssize_t, const char*); jpayne@69: void (*FinishContext)(void**); jpayne@69: } __Pyx_RefNannyAPIStruct; jpayne@69: static __Pyx_RefNannyAPIStruct *__Pyx_RefNanny = NULL; jpayne@69: static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname); jpayne@69: #define __Pyx_RefNannyDeclarations void *__pyx_refnanny = NULL; jpayne@69: #ifdef WITH_THREAD jpayne@69: #define __Pyx_RefNannySetupContext(name, acquire_gil)\ jpayne@69: if (acquire_gil) {\ jpayne@69: PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();\ jpayne@69: __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), (__LINE__), (__FILE__));\ jpayne@69: PyGILState_Release(__pyx_gilstate_save);\ jpayne@69: } else {\ jpayne@69: __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), (__LINE__), (__FILE__));\ jpayne@69: } jpayne@69: #define __Pyx_RefNannyFinishContextNogil() {\ jpayne@69: PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();\ jpayne@69: __Pyx_RefNannyFinishContext();\ jpayne@69: PyGILState_Release(__pyx_gilstate_save);\ jpayne@69: } jpayne@69: #else jpayne@69: #define __Pyx_RefNannySetupContext(name, acquire_gil)\ jpayne@69: __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), (__LINE__), (__FILE__)) jpayne@69: #define __Pyx_RefNannyFinishContextNogil() __Pyx_RefNannyFinishContext() jpayne@69: #endif jpayne@69: #define __Pyx_RefNannyFinishContextNogil() {\ jpayne@69: PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();\ jpayne@69: __Pyx_RefNannyFinishContext();\ jpayne@69: PyGILState_Release(__pyx_gilstate_save);\ jpayne@69: } jpayne@69: #define __Pyx_RefNannyFinishContext()\ jpayne@69: __Pyx_RefNanny->FinishContext(&__pyx_refnanny) jpayne@69: #define __Pyx_INCREF(r) __Pyx_RefNanny->INCREF(__pyx_refnanny, (PyObject *)(r), (__LINE__)) jpayne@69: #define __Pyx_DECREF(r) __Pyx_RefNanny->DECREF(__pyx_refnanny, (PyObject *)(r), (__LINE__)) jpayne@69: #define __Pyx_GOTREF(r) __Pyx_RefNanny->GOTREF(__pyx_refnanny, (PyObject *)(r), (__LINE__)) jpayne@69: #define __Pyx_GIVEREF(r) __Pyx_RefNanny->GIVEREF(__pyx_refnanny, (PyObject *)(r), (__LINE__)) jpayne@69: #define __Pyx_XINCREF(r) do { if((r) == NULL); else {__Pyx_INCREF(r); }} while(0) jpayne@69: #define __Pyx_XDECREF(r) do { if((r) == NULL); else {__Pyx_DECREF(r); }} while(0) jpayne@69: #define __Pyx_XGOTREF(r) do { if((r) == NULL); else {__Pyx_GOTREF(r); }} while(0) jpayne@69: #define __Pyx_XGIVEREF(r) do { if((r) == NULL); else {__Pyx_GIVEREF(r);}} while(0) jpayne@69: #else jpayne@69: #define __Pyx_RefNannyDeclarations jpayne@69: #define __Pyx_RefNannySetupContext(name, acquire_gil) jpayne@69: #define __Pyx_RefNannyFinishContextNogil() jpayne@69: #define __Pyx_RefNannyFinishContext() jpayne@69: #define __Pyx_INCREF(r) Py_INCREF(r) jpayne@69: #define __Pyx_DECREF(r) Py_DECREF(r) jpayne@69: #define __Pyx_GOTREF(r) jpayne@69: #define __Pyx_GIVEREF(r) jpayne@69: #define __Pyx_XINCREF(r) Py_XINCREF(r) jpayne@69: #define __Pyx_XDECREF(r) Py_XDECREF(r) jpayne@69: #define __Pyx_XGOTREF(r) jpayne@69: #define __Pyx_XGIVEREF(r) jpayne@69: #endif jpayne@69: #define __Pyx_Py_XDECREF_SET(r, v) do {\ jpayne@69: PyObject *tmp = (PyObject *) r;\ jpayne@69: r = v; Py_XDECREF(tmp);\ jpayne@69: } while (0) jpayne@69: #define __Pyx_XDECREF_SET(r, v) do {\ jpayne@69: PyObject *tmp = (PyObject *) r;\ jpayne@69: r = v; __Pyx_XDECREF(tmp);\ jpayne@69: } while (0) jpayne@69: #define __Pyx_DECREF_SET(r, v) do {\ jpayne@69: PyObject *tmp = (PyObject *) r;\ jpayne@69: r = v; __Pyx_DECREF(tmp);\ jpayne@69: } while (0) jpayne@69: #define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0) jpayne@69: #define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0) jpayne@69: jpayne@69: /* PyErrExceptionMatches.proto */ jpayne@69: #if CYTHON_FAST_THREAD_STATE jpayne@69: #define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err) jpayne@69: static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err); jpayne@69: #else jpayne@69: #define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err) jpayne@69: #endif jpayne@69: jpayne@69: /* PyThreadStateGet.proto */ jpayne@69: #if CYTHON_FAST_THREAD_STATE jpayne@69: #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate; jpayne@69: #define __Pyx_PyThreadState_assign __pyx_tstate = __Pyx_PyThreadState_Current; jpayne@69: #if PY_VERSION_HEX >= 0x030C00A6 jpayne@69: #define __Pyx_PyErr_Occurred() (__pyx_tstate->current_exception != NULL) jpayne@69: #define __Pyx_PyErr_CurrentExceptionType() (__pyx_tstate->current_exception ? (PyObject*) Py_TYPE(__pyx_tstate->current_exception) : (PyObject*) NULL) jpayne@69: #else jpayne@69: #define __Pyx_PyErr_Occurred() (__pyx_tstate->curexc_type != NULL) jpayne@69: #define __Pyx_PyErr_CurrentExceptionType() (__pyx_tstate->curexc_type) jpayne@69: #endif jpayne@69: #else jpayne@69: #define __Pyx_PyThreadState_declare jpayne@69: #define __Pyx_PyThreadState_assign jpayne@69: #define __Pyx_PyErr_Occurred() (PyErr_Occurred() != NULL) jpayne@69: #define __Pyx_PyErr_CurrentExceptionType() PyErr_Occurred() jpayne@69: #endif jpayne@69: jpayne@69: /* PyErrFetchRestore.proto */ jpayne@69: #if CYTHON_FAST_THREAD_STATE jpayne@69: #define __Pyx_PyErr_Clear() __Pyx_ErrRestore(NULL, NULL, NULL) jpayne@69: #define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb) jpayne@69: #define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb) jpayne@69: #define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb) jpayne@69: #define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb) jpayne@69: static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); jpayne@69: static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A6 jpayne@69: #define __Pyx_PyErr_SetNone(exc) (Py_INCREF(exc), __Pyx_ErrRestore((exc), NULL, NULL)) jpayne@69: #else jpayne@69: #define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc) jpayne@69: #endif jpayne@69: #else jpayne@69: #define __Pyx_PyErr_Clear() PyErr_Clear() jpayne@69: #define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc) jpayne@69: #define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb) jpayne@69: #define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb) jpayne@69: #define __Pyx_ErrRestoreInState(tstate, type, value, tb) PyErr_Restore(type, value, tb) jpayne@69: #define __Pyx_ErrFetchInState(tstate, type, value, tb) PyErr_Fetch(type, value, tb) jpayne@69: #define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb) jpayne@69: #define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb) jpayne@69: #endif jpayne@69: jpayne@69: /* PyObjectGetAttrStr.proto */ jpayne@69: #if CYTHON_USE_TYPE_SLOTS jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name); jpayne@69: #else jpayne@69: #define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n) jpayne@69: #endif jpayne@69: jpayne@69: /* PyObjectGetAttrStrNoError.proto */ jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name); jpayne@69: jpayne@69: /* GetBuiltinName.proto */ jpayne@69: static PyObject *__Pyx_GetBuiltinName(PyObject *name); jpayne@69: jpayne@69: /* TupleAndListFromArray.proto */ jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyList_FromArray(PyObject *const *src, Py_ssize_t n); jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyTuple_FromArray(PyObject *const *src, Py_ssize_t n); jpayne@69: #endif jpayne@69: jpayne@69: /* IncludeStringH.proto */ jpayne@69: #include jpayne@69: jpayne@69: /* BytesEquals.proto */ jpayne@69: static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals); jpayne@69: jpayne@69: /* UnicodeEquals.proto */ jpayne@69: static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals); jpayne@69: jpayne@69: /* fastcall.proto */ jpayne@69: #if CYTHON_AVOID_BORROWED_REFS jpayne@69: #define __Pyx_Arg_VARARGS(args, i) PySequence_GetItem(args, i) jpayne@69: #elif CYTHON_ASSUME_SAFE_MACROS jpayne@69: #define __Pyx_Arg_VARARGS(args, i) PyTuple_GET_ITEM(args, i) jpayne@69: #else jpayne@69: #define __Pyx_Arg_VARARGS(args, i) PyTuple_GetItem(args, i) jpayne@69: #endif jpayne@69: #if CYTHON_AVOID_BORROWED_REFS jpayne@69: #define __Pyx_Arg_NewRef_VARARGS(arg) __Pyx_NewRef(arg) jpayne@69: #define __Pyx_Arg_XDECREF_VARARGS(arg) Py_XDECREF(arg) jpayne@69: #else jpayne@69: #define __Pyx_Arg_NewRef_VARARGS(arg) arg jpayne@69: #define __Pyx_Arg_XDECREF_VARARGS(arg) jpayne@69: #endif jpayne@69: #define __Pyx_NumKwargs_VARARGS(kwds) PyDict_Size(kwds) jpayne@69: #define __Pyx_KwValues_VARARGS(args, nargs) NULL jpayne@69: #define __Pyx_GetKwValue_VARARGS(kw, kwvalues, s) __Pyx_PyDict_GetItemStrWithError(kw, s) jpayne@69: #define __Pyx_KwargsAsDict_VARARGS(kw, kwvalues) PyDict_Copy(kw) jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: #define __Pyx_Arg_FASTCALL(args, i) args[i] jpayne@69: #define __Pyx_NumKwargs_FASTCALL(kwds) PyTuple_GET_SIZE(kwds) jpayne@69: #define __Pyx_KwValues_FASTCALL(args, nargs) ((args) + (nargs)) jpayne@69: static CYTHON_INLINE PyObject * __Pyx_GetKwValue_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues, PyObject *s); jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 jpayne@69: CYTHON_UNUSED static PyObject *__Pyx_KwargsAsDict_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues); jpayne@69: #else jpayne@69: #define __Pyx_KwargsAsDict_FASTCALL(kw, kwvalues) _PyStack_AsDict(kwvalues, kw) jpayne@69: #endif jpayne@69: #define __Pyx_Arg_NewRef_FASTCALL(arg) arg /* no-op, __Pyx_Arg_FASTCALL is direct and this needs jpayne@69: to have the same reference counting */ jpayne@69: #define __Pyx_Arg_XDECREF_FASTCALL(arg) jpayne@69: #else jpayne@69: #define __Pyx_Arg_FASTCALL __Pyx_Arg_VARARGS jpayne@69: #define __Pyx_NumKwargs_FASTCALL __Pyx_NumKwargs_VARARGS jpayne@69: #define __Pyx_KwValues_FASTCALL __Pyx_KwValues_VARARGS jpayne@69: #define __Pyx_GetKwValue_FASTCALL __Pyx_GetKwValue_VARARGS jpayne@69: #define __Pyx_KwargsAsDict_FASTCALL __Pyx_KwargsAsDict_VARARGS jpayne@69: #define __Pyx_Arg_NewRef_FASTCALL(arg) __Pyx_Arg_NewRef_VARARGS(arg) jpayne@69: #define __Pyx_Arg_XDECREF_FASTCALL(arg) __Pyx_Arg_XDECREF_VARARGS(arg) jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON && CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS jpayne@69: #define __Pyx_ArgsSlice_VARARGS(args, start, stop) __Pyx_PyTuple_FromArray(&__Pyx_Arg_VARARGS(args, start), stop - start) jpayne@69: #define __Pyx_ArgsSlice_FASTCALL(args, start, stop) __Pyx_PyTuple_FromArray(&__Pyx_Arg_FASTCALL(args, start), stop - start) jpayne@69: #else jpayne@69: #define __Pyx_ArgsSlice_VARARGS(args, start, stop) PyTuple_GetSlice(args, start, stop) jpayne@69: #define __Pyx_ArgsSlice_FASTCALL(args, start, stop) PyTuple_GetSlice(args, start, stop) jpayne@69: #endif jpayne@69: jpayne@69: /* RaiseArgTupleInvalid.proto */ jpayne@69: static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, jpayne@69: Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); jpayne@69: jpayne@69: /* KeywordStringCheck.proto */ jpayne@69: static int __Pyx_CheckKeywordStrings(PyObject *kw, const char* function_name, int kw_allowed); jpayne@69: jpayne@69: /* Profile.proto */ jpayne@69: #ifndef CYTHON_PROFILE jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API || CYTHON_COMPILING_IN_PYPY jpayne@69: #define CYTHON_PROFILE 0 jpayne@69: #else jpayne@69: #define CYTHON_PROFILE 1 jpayne@69: #endif jpayne@69: #endif jpayne@69: #ifndef CYTHON_TRACE_NOGIL jpayne@69: #define CYTHON_TRACE_NOGIL 0 jpayne@69: #else jpayne@69: #if CYTHON_TRACE_NOGIL && !defined(CYTHON_TRACE) jpayne@69: #define CYTHON_TRACE 1 jpayne@69: #endif jpayne@69: #endif jpayne@69: #ifndef CYTHON_TRACE jpayne@69: #define CYTHON_TRACE 0 jpayne@69: #endif jpayne@69: #if CYTHON_TRACE jpayne@69: #undef CYTHON_PROFILE_REUSE_FRAME jpayne@69: #endif jpayne@69: #ifndef CYTHON_PROFILE_REUSE_FRAME jpayne@69: #define CYTHON_PROFILE_REUSE_FRAME 0 jpayne@69: #endif jpayne@69: #if CYTHON_PROFILE || CYTHON_TRACE jpayne@69: #include "compile.h" jpayne@69: #include "frameobject.h" jpayne@69: #include "traceback.h" jpayne@69: #if PY_VERSION_HEX >= 0x030b00a6 jpayne@69: #ifndef Py_BUILD_CORE jpayne@69: #define Py_BUILD_CORE 1 jpayne@69: #endif jpayne@69: #include "internal/pycore_frame.h" jpayne@69: #endif jpayne@69: #if CYTHON_PROFILE_REUSE_FRAME jpayne@69: #define CYTHON_FRAME_MODIFIER static jpayne@69: #define CYTHON_FRAME_DEL(frame) jpayne@69: #else jpayne@69: #define CYTHON_FRAME_MODIFIER jpayne@69: #define CYTHON_FRAME_DEL(frame) Py_CLEAR(frame) jpayne@69: #endif jpayne@69: #define __Pyx_TraceDeclarations\ jpayne@69: static PyCodeObject *__pyx_frame_code = NULL;\ jpayne@69: CYTHON_FRAME_MODIFIER PyFrameObject *__pyx_frame = NULL;\ jpayne@69: int __Pyx_use_tracing = 0; jpayne@69: #define __Pyx_TraceFrameInit(codeobj)\ jpayne@69: if (codeobj) __pyx_frame_code = (PyCodeObject*) codeobj; jpayne@69: #if PY_VERSION_HEX >= 0x030b00a2 jpayne@69: #if PY_VERSION_HEX >= 0x030C00b1 jpayne@69: #define __Pyx_IsTracing(tstate, check_tracing, check_funcs)\ jpayne@69: ((!(check_tracing) || !(tstate)->tracing) &&\ jpayne@69: (!(check_funcs) || (tstate)->c_profilefunc || (CYTHON_TRACE && (tstate)->c_tracefunc))) jpayne@69: #else jpayne@69: #define __Pyx_IsTracing(tstate, check_tracing, check_funcs)\ jpayne@69: (unlikely((tstate)->cframe->use_tracing) &&\ jpayne@69: (!(check_tracing) || !(tstate)->tracing) &&\ jpayne@69: (!(check_funcs) || (tstate)->c_profilefunc || (CYTHON_TRACE && (tstate)->c_tracefunc))) jpayne@69: #endif jpayne@69: #define __Pyx_EnterTracing(tstate) PyThreadState_EnterTracing(tstate) jpayne@69: #define __Pyx_LeaveTracing(tstate) PyThreadState_LeaveTracing(tstate) jpayne@69: #elif PY_VERSION_HEX >= 0x030a00b1 jpayne@69: #define __Pyx_IsTracing(tstate, check_tracing, check_funcs)\ jpayne@69: (unlikely((tstate)->cframe->use_tracing) &&\ jpayne@69: (!(check_tracing) || !(tstate)->tracing) &&\ jpayne@69: (!(check_funcs) || (tstate)->c_profilefunc || (CYTHON_TRACE && (tstate)->c_tracefunc))) jpayne@69: #define __Pyx_EnterTracing(tstate)\ jpayne@69: do { tstate->tracing++; tstate->cframe->use_tracing = 0; } while (0) jpayne@69: #define __Pyx_LeaveTracing(tstate)\ jpayne@69: do {\ jpayne@69: tstate->tracing--;\ jpayne@69: tstate->cframe->use_tracing = ((CYTHON_TRACE && tstate->c_tracefunc != NULL)\ jpayne@69: || tstate->c_profilefunc != NULL);\ jpayne@69: } while (0) jpayne@69: #else jpayne@69: #define __Pyx_IsTracing(tstate, check_tracing, check_funcs)\ jpayne@69: (unlikely((tstate)->use_tracing) &&\ jpayne@69: (!(check_tracing) || !(tstate)->tracing) &&\ jpayne@69: (!(check_funcs) || (tstate)->c_profilefunc || (CYTHON_TRACE && (tstate)->c_tracefunc))) jpayne@69: #define __Pyx_EnterTracing(tstate)\ jpayne@69: do { tstate->tracing++; tstate->use_tracing = 0; } while (0) jpayne@69: #define __Pyx_LeaveTracing(tstate)\ jpayne@69: do {\ jpayne@69: tstate->tracing--;\ jpayne@69: tstate->use_tracing = ((CYTHON_TRACE && tstate->c_tracefunc != NULL)\ jpayne@69: || tstate->c_profilefunc != NULL);\ jpayne@69: } while (0) jpayne@69: #endif jpayne@69: #ifdef WITH_THREAD jpayne@69: #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\ jpayne@69: if (nogil) {\ jpayne@69: if (CYTHON_TRACE_NOGIL) {\ jpayne@69: PyThreadState *tstate;\ jpayne@69: PyGILState_STATE state = PyGILState_Ensure();\ jpayne@69: tstate = __Pyx_PyThreadState_Current;\ jpayne@69: if (__Pyx_IsTracing(tstate, 1, 1)) {\ jpayne@69: __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, tstate, funcname, srcfile, firstlineno);\ jpayne@69: }\ jpayne@69: PyGILState_Release(state);\ jpayne@69: if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ jpayne@69: }\ jpayne@69: } else {\ jpayne@69: PyThreadState* tstate = PyThreadState_GET();\ jpayne@69: if (__Pyx_IsTracing(tstate, 1, 1)) {\ jpayne@69: __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, tstate, funcname, srcfile, firstlineno);\ jpayne@69: if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ jpayne@69: }\ jpayne@69: } jpayne@69: #else jpayne@69: #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\ jpayne@69: { PyThreadState* tstate = PyThreadState_GET();\ jpayne@69: if (__Pyx_IsTracing(tstate, 1, 1)) {\ jpayne@69: __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, tstate, funcname, srcfile, firstlineno);\ jpayne@69: if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ jpayne@69: }\ jpayne@69: } jpayne@69: #endif jpayne@69: #define __Pyx_TraceException()\ jpayne@69: if (likely(!__Pyx_use_tracing)); else {\ jpayne@69: PyThreadState* tstate = __Pyx_PyThreadState_Current;\ jpayne@69: if (__Pyx_IsTracing(tstate, 0, 1)) {\ jpayne@69: __Pyx_EnterTracing(tstate);\ jpayne@69: PyObject *exc_info = __Pyx_GetExceptionTuple(tstate);\ jpayne@69: if (exc_info) {\ jpayne@69: if (CYTHON_TRACE && tstate->c_tracefunc)\ jpayne@69: tstate->c_tracefunc(\ jpayne@69: tstate->c_traceobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\ jpayne@69: tstate->c_profilefunc(\ jpayne@69: tstate->c_profileobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\ jpayne@69: Py_DECREF(exc_info);\ jpayne@69: }\ jpayne@69: __Pyx_LeaveTracing(tstate);\ jpayne@69: }\ jpayne@69: } jpayne@69: static void __Pyx_call_return_trace_func(PyThreadState *tstate, PyFrameObject *frame, PyObject *result) { jpayne@69: PyObject *type, *value, *traceback; jpayne@69: __Pyx_ErrFetchInState(tstate, &type, &value, &traceback); jpayne@69: __Pyx_EnterTracing(tstate); jpayne@69: if (CYTHON_TRACE && tstate->c_tracefunc) jpayne@69: tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_RETURN, result); jpayne@69: if (tstate->c_profilefunc) jpayne@69: tstate->c_profilefunc(tstate->c_profileobj, frame, PyTrace_RETURN, result); jpayne@69: CYTHON_FRAME_DEL(frame); jpayne@69: __Pyx_LeaveTracing(tstate); jpayne@69: __Pyx_ErrRestoreInState(tstate, type, value, traceback); jpayne@69: } jpayne@69: #ifdef WITH_THREAD jpayne@69: #define __Pyx_TraceReturn(result, nogil)\ jpayne@69: if (likely(!__Pyx_use_tracing)); else {\ jpayne@69: if (nogil) {\ jpayne@69: if (CYTHON_TRACE_NOGIL) {\ jpayne@69: PyThreadState *tstate;\ jpayne@69: PyGILState_STATE state = PyGILState_Ensure();\ jpayne@69: tstate = __Pyx_PyThreadState_Current;\ jpayne@69: if (__Pyx_IsTracing(tstate, 0, 0)) {\ jpayne@69: __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ jpayne@69: }\ jpayne@69: PyGILState_Release(state);\ jpayne@69: }\ jpayne@69: } else {\ jpayne@69: PyThreadState* tstate = __Pyx_PyThreadState_Current;\ jpayne@69: if (__Pyx_IsTracing(tstate, 0, 0)) {\ jpayne@69: __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ jpayne@69: }\ jpayne@69: }\ jpayne@69: } jpayne@69: #else jpayne@69: #define __Pyx_TraceReturn(result, nogil)\ jpayne@69: if (likely(!__Pyx_use_tracing)); else {\ jpayne@69: PyThreadState* tstate = __Pyx_PyThreadState_Current;\ jpayne@69: if (__Pyx_IsTracing(tstate, 0, 0)) {\ jpayne@69: __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ jpayne@69: }\ jpayne@69: } jpayne@69: #endif jpayne@69: static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno); jpayne@69: static int __Pyx_TraceSetupAndCall(PyCodeObject** code, PyFrameObject** frame, PyThreadState* tstate, const char *funcname, const char *srcfile, int firstlineno); jpayne@69: #else jpayne@69: #define __Pyx_TraceDeclarations jpayne@69: #define __Pyx_TraceFrameInit(codeobj) jpayne@69: #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if ((1)); else goto_error; jpayne@69: #define __Pyx_TraceException() jpayne@69: #define __Pyx_TraceReturn(result, nogil) jpayne@69: #endif jpayne@69: #if CYTHON_TRACE jpayne@69: static int __Pyx_call_line_trace_func(PyThreadState *tstate, PyFrameObject *frame, int lineno) { jpayne@69: int ret; jpayne@69: PyObject *type, *value, *traceback; jpayne@69: __Pyx_ErrFetchInState(tstate, &type, &value, &traceback); jpayne@69: __Pyx_PyFrame_SetLineNumber(frame, lineno); jpayne@69: __Pyx_EnterTracing(tstate); jpayne@69: ret = tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_LINE, NULL); jpayne@69: __Pyx_LeaveTracing(tstate); jpayne@69: if (likely(!ret)) { jpayne@69: __Pyx_ErrRestoreInState(tstate, type, value, traceback); jpayne@69: } else { jpayne@69: Py_XDECREF(type); jpayne@69: Py_XDECREF(value); jpayne@69: Py_XDECREF(traceback); jpayne@69: } jpayne@69: return ret; jpayne@69: } jpayne@69: #ifdef WITH_THREAD jpayne@69: #define __Pyx_TraceLine(lineno, nogil, goto_error)\ jpayne@69: if (likely(!__Pyx_use_tracing)); else {\ jpayne@69: if (nogil) {\ jpayne@69: if (CYTHON_TRACE_NOGIL) {\ jpayne@69: int ret = 0;\ jpayne@69: PyThreadState *tstate;\ jpayne@69: PyGILState_STATE state = __Pyx_PyGILState_Ensure();\ jpayne@69: tstate = __Pyx_PyThreadState_Current;\ jpayne@69: if (__Pyx_IsTracing(tstate, 0, 0) && tstate->c_tracefunc && __pyx_frame->f_trace) {\ jpayne@69: ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ jpayne@69: }\ jpayne@69: __Pyx_PyGILState_Release(state);\ jpayne@69: if (unlikely(ret)) goto_error;\ jpayne@69: }\ jpayne@69: } else {\ jpayne@69: PyThreadState* tstate = __Pyx_PyThreadState_Current;\ jpayne@69: if (__Pyx_IsTracing(tstate, 0, 0) && tstate->c_tracefunc && __pyx_frame->f_trace) {\ jpayne@69: int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ jpayne@69: if (unlikely(ret)) goto_error;\ jpayne@69: }\ jpayne@69: }\ jpayne@69: } jpayne@69: #else jpayne@69: #define __Pyx_TraceLine(lineno, nogil, goto_error)\ jpayne@69: if (likely(!__Pyx_use_tracing)); else {\ jpayne@69: PyThreadState* tstate = __Pyx_PyThreadState_Current;\ jpayne@69: if (__Pyx_IsTracing(tstate, 0, 0) && tstate->c_tracefunc && __pyx_frame->f_trace) {\ jpayne@69: int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ jpayne@69: if (unlikely(ret)) goto_error;\ jpayne@69: }\ jpayne@69: } jpayne@69: #endif jpayne@69: #else jpayne@69: #define __Pyx_TraceLine(lineno, nogil, goto_error) if ((1)); else goto_error; jpayne@69: #endif jpayne@69: jpayne@69: /* RaiseException.proto */ jpayne@69: static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); jpayne@69: jpayne@69: /* RaiseDoubleKeywords.proto */ jpayne@69: static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); jpayne@69: jpayne@69: /* ParseKeywords.proto */ jpayne@69: static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject *const *kwvalues, jpayne@69: PyObject **argnames[], jpayne@69: PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, jpayne@69: const char* function_name); jpayne@69: jpayne@69: /* CallNextTpTraverse.proto */ jpayne@69: static int __Pyx_call_next_tp_traverse(PyObject* obj, visitproc v, void *a, traverseproc current_tp_traverse); jpayne@69: jpayne@69: /* CallNextTpClear.proto */ jpayne@69: static void __Pyx_call_next_tp_clear(PyObject* obj, inquiry current_tp_clear); jpayne@69: jpayne@69: /* TypeImport.proto */ jpayne@69: #ifndef __PYX_HAVE_RT_ImportType_proto_3_0_11 jpayne@69: #define __PYX_HAVE_RT_ImportType_proto_3_0_11 jpayne@69: #if defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L jpayne@69: #include jpayne@69: #endif jpayne@69: #if (defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L) || __cplusplus >= 201103L jpayne@69: #define __PYX_GET_STRUCT_ALIGNMENT_3_0_11(s) alignof(s) jpayne@69: #else jpayne@69: #define __PYX_GET_STRUCT_ALIGNMENT_3_0_11(s) sizeof(void*) jpayne@69: #endif jpayne@69: enum __Pyx_ImportType_CheckSize_3_0_11 { jpayne@69: __Pyx_ImportType_CheckSize_Error_3_0_11 = 0, jpayne@69: __Pyx_ImportType_CheckSize_Warn_3_0_11 = 1, jpayne@69: __Pyx_ImportType_CheckSize_Ignore_3_0_11 = 2 jpayne@69: }; jpayne@69: static PyTypeObject *__Pyx_ImportType_3_0_11(PyObject* module, const char *module_name, const char *class_name, size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_0_11 check_size); jpayne@69: #endif jpayne@69: jpayne@69: /* GetVTable.proto */ jpayne@69: static void* __Pyx_GetVtable(PyTypeObject *type); jpayne@69: jpayne@69: /* IncludeStructmemberH.proto */ jpayne@69: #include jpayne@69: jpayne@69: /* FixUpExtensionType.proto */ jpayne@69: #if CYTHON_USE_TYPE_SPECS jpayne@69: static int __Pyx_fix_up_extension_type_from_spec(PyType_Spec *spec, PyTypeObject *type); jpayne@69: #endif jpayne@69: jpayne@69: /* PyFunctionFastCall.proto */ jpayne@69: #if CYTHON_FAST_PYCALL jpayne@69: #if !CYTHON_VECTORCALL jpayne@69: #define __Pyx_PyFunction_FastCall(func, args, nargs)\ jpayne@69: __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL) jpayne@69: static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs); jpayne@69: #endif jpayne@69: #define __Pyx_BUILD_ASSERT_EXPR(cond)\ jpayne@69: (sizeof(char [1 - 2*!(cond)]) - 1) jpayne@69: #ifndef Py_MEMBER_SIZE jpayne@69: #define Py_MEMBER_SIZE(type, member) sizeof(((type *)0)->member) jpayne@69: #endif jpayne@69: #if !CYTHON_VECTORCALL jpayne@69: #if PY_VERSION_HEX >= 0x03080000 jpayne@69: #include "frameobject.h" jpayne@69: #if PY_VERSION_HEX >= 0x030b00a6 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: #ifndef Py_BUILD_CORE jpayne@69: #define Py_BUILD_CORE 1 jpayne@69: #endif jpayne@69: #include "internal/pycore_frame.h" jpayne@69: #endif jpayne@69: #define __Pxy_PyFrame_Initialize_Offsets() jpayne@69: #define __Pyx_PyFrame_GetLocalsplus(frame) ((frame)->f_localsplus) jpayne@69: #else jpayne@69: static size_t __pyx_pyframe_localsplus_offset = 0; jpayne@69: #include "frameobject.h" jpayne@69: #define __Pxy_PyFrame_Initialize_Offsets()\ jpayne@69: ((void)__Pyx_BUILD_ASSERT_EXPR(sizeof(PyFrameObject) == offsetof(PyFrameObject, f_localsplus) + Py_MEMBER_SIZE(PyFrameObject, f_localsplus)),\ jpayne@69: (void)(__pyx_pyframe_localsplus_offset = ((size_t)PyFrame_Type.tp_basicsize) - Py_MEMBER_SIZE(PyFrameObject, f_localsplus))) jpayne@69: #define __Pyx_PyFrame_GetLocalsplus(frame)\ jpayne@69: (assert(__pyx_pyframe_localsplus_offset), (PyObject **)(((char *)(frame)) + __pyx_pyframe_localsplus_offset)) jpayne@69: #endif jpayne@69: #endif jpayne@69: #endif jpayne@69: jpayne@69: /* PyObjectCall.proto */ jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw); jpayne@69: #else jpayne@69: #define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw) jpayne@69: #endif jpayne@69: jpayne@69: /* PyObjectCallMethO.proto */ jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg); jpayne@69: #endif jpayne@69: jpayne@69: /* PyObjectFastCall.proto */ jpayne@69: #define __Pyx_PyObject_FastCall(func, args, nargs) __Pyx_PyObject_FastCallDict(func, args, (size_t)(nargs), NULL) jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyObject_FastCallDict(PyObject *func, PyObject **args, size_t nargs, PyObject *kwargs); jpayne@69: jpayne@69: /* PyObjectCallNoArg.proto */ jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func); jpayne@69: jpayne@69: /* PyObjectCallOneArg.proto */ jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg); jpayne@69: jpayne@69: /* PyObjectGetMethod.proto */ jpayne@69: static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method); jpayne@69: jpayne@69: /* PyObjectCallMethod0.proto */ jpayne@69: static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name); jpayne@69: jpayne@69: /* ValidateBasesTuple.proto */ jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON || CYTHON_COMPILING_IN_LIMITED_API || CYTHON_USE_TYPE_SPECS jpayne@69: static int __Pyx_validate_bases_tuple(const char *type_name, Py_ssize_t dictoffset, PyObject *bases); jpayne@69: #endif jpayne@69: jpayne@69: /* PyType_Ready.proto */ jpayne@69: CYTHON_UNUSED static int __Pyx_PyType_Ready(PyTypeObject *t); jpayne@69: jpayne@69: /* PyObject_GenericGetAttrNoDict.proto */ jpayne@69: #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name); jpayne@69: #else jpayne@69: #define __Pyx_PyObject_GenericGetAttrNoDict PyObject_GenericGetAttr jpayne@69: #endif jpayne@69: jpayne@69: /* PyObject_GenericGetAttr.proto */ jpayne@69: #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 jpayne@69: static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name); jpayne@69: #else jpayne@69: #define __Pyx_PyObject_GenericGetAttr PyObject_GenericGetAttr jpayne@69: #endif jpayne@69: jpayne@69: /* SetVTable.proto */ jpayne@69: static int __Pyx_SetVtable(PyTypeObject* typeptr , void* vtable); jpayne@69: jpayne@69: /* MergeVTables.proto */ jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: static int __Pyx_MergeVtables(PyTypeObject *type); jpayne@69: #endif jpayne@69: jpayne@69: /* SetupReduce.proto */ jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: static int __Pyx_setup_reduce(PyObject* type_obj); jpayne@69: #endif jpayne@69: jpayne@69: /* Import.proto */ jpayne@69: static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); jpayne@69: jpayne@69: /* ImportDottedModule.proto */ jpayne@69: static PyObject *__Pyx_ImportDottedModule(PyObject *name, PyObject *parts_tuple); jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: static PyObject *__Pyx_ImportDottedModule_WalkParts(PyObject *module, PyObject *name, PyObject *parts_tuple); jpayne@69: #endif jpayne@69: jpayne@69: /* FetchSharedCythonModule.proto */ jpayne@69: static PyObject *__Pyx_FetchSharedCythonABIModule(void); jpayne@69: jpayne@69: /* FetchCommonType.proto */ jpayne@69: #if !CYTHON_USE_TYPE_SPECS jpayne@69: static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type); jpayne@69: #else jpayne@69: static PyTypeObject* __Pyx_FetchCommonTypeFromSpec(PyObject *module, PyType_Spec *spec, PyObject *bases); jpayne@69: #endif jpayne@69: jpayne@69: /* PyMethodNew.proto */ jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: static PyObject *__Pyx_PyMethod_New(PyObject *func, PyObject *self, PyObject *typ) { jpayne@69: PyObject *typesModule=NULL, *methodType=NULL, *result=NULL; jpayne@69: CYTHON_UNUSED_VAR(typ); jpayne@69: if (!self) jpayne@69: return __Pyx_NewRef(func); jpayne@69: typesModule = PyImport_ImportModule("types"); jpayne@69: if (!typesModule) return NULL; jpayne@69: methodType = PyObject_GetAttrString(typesModule, "MethodType"); jpayne@69: Py_DECREF(typesModule); jpayne@69: if (!methodType) return NULL; jpayne@69: result = PyObject_CallFunctionObjArgs(methodType, func, self, NULL); jpayne@69: Py_DECREF(methodType); jpayne@69: return result; jpayne@69: } jpayne@69: #elif PY_MAJOR_VERSION >= 3 jpayne@69: static PyObject *__Pyx_PyMethod_New(PyObject *func, PyObject *self, PyObject *typ) { jpayne@69: CYTHON_UNUSED_VAR(typ); jpayne@69: if (!self) jpayne@69: return __Pyx_NewRef(func); jpayne@69: return PyMethod_New(func, self); jpayne@69: } jpayne@69: #else jpayne@69: #define __Pyx_PyMethod_New PyMethod_New jpayne@69: #endif jpayne@69: jpayne@69: /* PyVectorcallFastCallDict.proto */ jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: static CYTHON_INLINE PyObject *__Pyx_PyVectorcall_FastCallDict(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw); jpayne@69: #endif jpayne@69: jpayne@69: /* CythonFunctionShared.proto */ jpayne@69: #define __Pyx_CyFunction_USED jpayne@69: #define __Pyx_CYFUNCTION_STATICMETHOD 0x01 jpayne@69: #define __Pyx_CYFUNCTION_CLASSMETHOD 0x02 jpayne@69: #define __Pyx_CYFUNCTION_CCLASS 0x04 jpayne@69: #define __Pyx_CYFUNCTION_COROUTINE 0x08 jpayne@69: #define __Pyx_CyFunction_GetClosure(f)\ jpayne@69: (((__pyx_CyFunctionObject *) (f))->func_closure) jpayne@69: #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API jpayne@69: #define __Pyx_CyFunction_GetClassObj(f)\ jpayne@69: (((__pyx_CyFunctionObject *) (f))->func_classobj) jpayne@69: #else jpayne@69: #define __Pyx_CyFunction_GetClassObj(f)\ jpayne@69: ((PyObject*) ((PyCMethodObject *) (f))->mm_class) jpayne@69: #endif jpayne@69: #define __Pyx_CyFunction_SetClassObj(f, classobj)\ jpayne@69: __Pyx__CyFunction_SetClassObj((__pyx_CyFunctionObject *) (f), (classobj)) jpayne@69: #define __Pyx_CyFunction_Defaults(type, f)\ jpayne@69: ((type *)(((__pyx_CyFunctionObject *) (f))->defaults)) jpayne@69: #define __Pyx_CyFunction_SetDefaultsGetter(f, g)\ jpayne@69: ((__pyx_CyFunctionObject *) (f))->defaults_getter = (g) jpayne@69: typedef struct { jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: PyObject_HEAD jpayne@69: PyObject *func; jpayne@69: #elif PY_VERSION_HEX < 0x030900B1 jpayne@69: PyCFunctionObject func; jpayne@69: #else jpayne@69: PyCMethodObject func; jpayne@69: #endif jpayne@69: #if CYTHON_BACKPORT_VECTORCALL jpayne@69: __pyx_vectorcallfunc func_vectorcall; jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX < 0x030500A0 || CYTHON_COMPILING_IN_LIMITED_API jpayne@69: PyObject *func_weakreflist; jpayne@69: #endif jpayne@69: PyObject *func_dict; jpayne@69: PyObject *func_name; jpayne@69: PyObject *func_qualname; jpayne@69: PyObject *func_doc; jpayne@69: PyObject *func_globals; jpayne@69: PyObject *func_code; jpayne@69: PyObject *func_closure; jpayne@69: #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API jpayne@69: PyObject *func_classobj; jpayne@69: #endif jpayne@69: void *defaults; jpayne@69: int defaults_pyobjects; jpayne@69: size_t defaults_size; jpayne@69: int flags; jpayne@69: PyObject *defaults_tuple; jpayne@69: PyObject *defaults_kwdict; jpayne@69: PyObject *(*defaults_getter)(PyObject *); jpayne@69: PyObject *func_annotations; jpayne@69: PyObject *func_is_coroutine; jpayne@69: } __pyx_CyFunctionObject; jpayne@69: #undef __Pyx_CyOrPyCFunction_Check jpayne@69: #define __Pyx_CyFunction_Check(obj) __Pyx_TypeCheck(obj, __pyx_CyFunctionType) jpayne@69: #define __Pyx_CyOrPyCFunction_Check(obj) __Pyx_TypeCheck2(obj, __pyx_CyFunctionType, &PyCFunction_Type) jpayne@69: #define __Pyx_CyFunction_CheckExact(obj) __Pyx_IS_TYPE(obj, __pyx_CyFunctionType) jpayne@69: static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc); jpayne@69: #undef __Pyx_IsSameCFunction jpayne@69: #define __Pyx_IsSameCFunction(func, cfunc) __Pyx__IsSameCyOrCFunction(func, cfunc) jpayne@69: static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject* op, PyMethodDef *ml, jpayne@69: int flags, PyObject* qualname, jpayne@69: PyObject *closure, jpayne@69: PyObject *module, PyObject *globals, jpayne@69: PyObject* code); jpayne@69: static CYTHON_INLINE void __Pyx__CyFunction_SetClassObj(__pyx_CyFunctionObject* f, PyObject* classobj); jpayne@69: static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *m, jpayne@69: size_t size, jpayne@69: int pyobjects); jpayne@69: static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *m, jpayne@69: PyObject *tuple); jpayne@69: static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *m, jpayne@69: PyObject *dict); jpayne@69: static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *m, jpayne@69: PyObject *dict); jpayne@69: static int __pyx_CyFunction_init(PyObject *module); jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: static PyObject * __Pyx_CyFunction_Vectorcall_NOARGS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); jpayne@69: static PyObject * __Pyx_CyFunction_Vectorcall_O(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); jpayne@69: static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); jpayne@69: static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); jpayne@69: #if CYTHON_BACKPORT_VECTORCALL jpayne@69: #define __Pyx_CyFunction_func_vectorcall(f) (((__pyx_CyFunctionObject*)f)->func_vectorcall) jpayne@69: #else jpayne@69: #define __Pyx_CyFunction_func_vectorcall(f) (((PyCFunctionObject*)f)->vectorcall) jpayne@69: #endif jpayne@69: #endif jpayne@69: jpayne@69: /* CythonFunction.proto */ jpayne@69: static PyObject *__Pyx_CyFunction_New(PyMethodDef *ml, jpayne@69: int flags, PyObject* qualname, jpayne@69: PyObject *closure, jpayne@69: PyObject *module, PyObject *globals, jpayne@69: PyObject* code); jpayne@69: jpayne@69: /* PyDictVersioning.proto */ jpayne@69: #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS jpayne@69: #define __PYX_DICT_VERSION_INIT ((PY_UINT64_T) -1) jpayne@69: #define __PYX_GET_DICT_VERSION(dict) (((PyDictObject*)(dict))->ma_version_tag) jpayne@69: #define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)\ jpayne@69: (version_var) = __PYX_GET_DICT_VERSION(dict);\ jpayne@69: (cache_var) = (value); jpayne@69: #define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) {\ jpayne@69: static PY_UINT64_T __pyx_dict_version = 0;\ jpayne@69: static PyObject *__pyx_dict_cached_value = NULL;\ jpayne@69: if (likely(__PYX_GET_DICT_VERSION(DICT) == __pyx_dict_version)) {\ jpayne@69: (VAR) = __pyx_dict_cached_value;\ jpayne@69: } else {\ jpayne@69: (VAR) = __pyx_dict_cached_value = (LOOKUP);\ jpayne@69: __pyx_dict_version = __PYX_GET_DICT_VERSION(DICT);\ jpayne@69: }\ jpayne@69: } jpayne@69: static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj); jpayne@69: static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj); jpayne@69: static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version); jpayne@69: #else jpayne@69: #define __PYX_GET_DICT_VERSION(dict) (0) jpayne@69: #define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var) jpayne@69: #define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) (VAR) = (LOOKUP); jpayne@69: #endif jpayne@69: jpayne@69: /* CLineInTraceback.proto */ jpayne@69: #ifdef CYTHON_CLINE_IN_TRACEBACK jpayne@69: #define __Pyx_CLineForTraceback(tstate, c_line) (((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0) jpayne@69: #else jpayne@69: static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line); jpayne@69: #endif jpayne@69: jpayne@69: /* CodeObjectCache.proto */ jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: typedef struct { jpayne@69: PyCodeObject* code_object; jpayne@69: int code_line; jpayne@69: } __Pyx_CodeObjectCacheEntry; jpayne@69: struct __Pyx_CodeObjectCache { jpayne@69: int count; jpayne@69: int max_count; jpayne@69: __Pyx_CodeObjectCacheEntry* entries; jpayne@69: }; jpayne@69: static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL}; jpayne@69: static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line); jpayne@69: static PyCodeObject *__pyx_find_code_object(int code_line); jpayne@69: static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); jpayne@69: #endif jpayne@69: jpayne@69: /* AddTraceback.proto */ jpayne@69: static void __Pyx_AddTraceback(const char *funcname, int c_line, jpayne@69: int py_line, const char *filename); jpayne@69: jpayne@69: /* GCCDiagnostics.proto */ jpayne@69: #if !defined(__INTEL_COMPILER) && defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 6)) jpayne@69: #define __Pyx_HAS_GCC_DIAGNOSTIC jpayne@69: #endif jpayne@69: jpayne@69: /* ArrayAPI.proto */ jpayne@69: #ifndef _ARRAYARRAY_H jpayne@69: #define _ARRAYARRAY_H jpayne@69: typedef struct arraydescr { jpayne@69: int typecode; jpayne@69: int itemsize; jpayne@69: PyObject * (*getitem)(struct arrayobject *, Py_ssize_t); jpayne@69: int (*setitem)(struct arrayobject *, Py_ssize_t, PyObject *); jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: char *formats; jpayne@69: #endif jpayne@69: } arraydescr; jpayne@69: struct arrayobject { jpayne@69: PyObject_HEAD jpayne@69: Py_ssize_t ob_size; jpayne@69: union { jpayne@69: char *ob_item; jpayne@69: float *as_floats; jpayne@69: double *as_doubles; jpayne@69: int *as_ints; jpayne@69: unsigned int *as_uints; jpayne@69: unsigned char *as_uchars; jpayne@69: signed char *as_schars; jpayne@69: char *as_chars; jpayne@69: unsigned long *as_ulongs; jpayne@69: long *as_longs; jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: unsigned long long *as_ulonglongs; jpayne@69: long long *as_longlongs; jpayne@69: #endif jpayne@69: short *as_shorts; jpayne@69: unsigned short *as_ushorts; jpayne@69: Py_UNICODE *as_pyunicodes; jpayne@69: void *as_voidptr; jpayne@69: } data; jpayne@69: Py_ssize_t allocated; jpayne@69: struct arraydescr *ob_descr; jpayne@69: PyObject *weakreflist; jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: int ob_exports; jpayne@69: #endif jpayne@69: }; jpayne@69: #ifndef NO_NEWARRAY_INLINE jpayne@69: static CYTHON_INLINE PyObject * newarrayobject(PyTypeObject *type, Py_ssize_t size, jpayne@69: struct arraydescr *descr) { jpayne@69: arrayobject *op; jpayne@69: size_t nbytes; jpayne@69: if (size < 0) { jpayne@69: PyErr_BadInternalCall(); jpayne@69: return NULL; jpayne@69: } jpayne@69: nbytes = size * descr->itemsize; jpayne@69: if (nbytes / descr->itemsize != (size_t)size) { jpayne@69: return PyErr_NoMemory(); jpayne@69: } jpayne@69: op = (arrayobject *) type->tp_alloc(type, 0); jpayne@69: if (op == NULL) { jpayne@69: return NULL; jpayne@69: } jpayne@69: op->ob_descr = descr; jpayne@69: op->allocated = size; jpayne@69: op->weakreflist = NULL; jpayne@69: __Pyx_SET_SIZE(op, size); jpayne@69: if (size <= 0) { jpayne@69: op->data.ob_item = NULL; jpayne@69: } jpayne@69: else { jpayne@69: op->data.ob_item = PyMem_NEW(char, nbytes); jpayne@69: if (op->data.ob_item == NULL) { jpayne@69: Py_DECREF(op); jpayne@69: return PyErr_NoMemory(); jpayne@69: } jpayne@69: } jpayne@69: return (PyObject *) op; jpayne@69: } jpayne@69: #else jpayne@69: PyObject* newarrayobject(PyTypeObject *type, Py_ssize_t size, jpayne@69: struct arraydescr *descr); jpayne@69: #endif jpayne@69: static CYTHON_INLINE int resize(arrayobject *self, Py_ssize_t n) { jpayne@69: void *items = (void*) self->data.ob_item; jpayne@69: PyMem_Resize(items, char, (size_t)(n * self->ob_descr->itemsize)); jpayne@69: if (items == NULL) { jpayne@69: PyErr_NoMemory(); jpayne@69: return -1; jpayne@69: } jpayne@69: self->data.ob_item = (char*) items; jpayne@69: __Pyx_SET_SIZE(self, n); jpayne@69: self->allocated = n; jpayne@69: return 0; jpayne@69: } jpayne@69: static CYTHON_INLINE int resize_smart(arrayobject *self, Py_ssize_t n) { jpayne@69: void *items = (void*) self->data.ob_item; jpayne@69: Py_ssize_t newsize; jpayne@69: if (n < self->allocated && n*4 > self->allocated) { jpayne@69: __Pyx_SET_SIZE(self, n); jpayne@69: return 0; jpayne@69: } jpayne@69: newsize = n + (n / 2) + 1; jpayne@69: if (newsize <= n) { jpayne@69: PyErr_NoMemory(); jpayne@69: return -1; jpayne@69: } jpayne@69: PyMem_Resize(items, char, (size_t)(newsize * self->ob_descr->itemsize)); jpayne@69: if (items == NULL) { jpayne@69: PyErr_NoMemory(); jpayne@69: return -1; jpayne@69: } jpayne@69: self->data.ob_item = (char*) items; jpayne@69: __Pyx_SET_SIZE(self, n); jpayne@69: self->allocated = newsize; jpayne@69: return 0; jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* CIntFromPy.proto */ jpayne@69: static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); jpayne@69: jpayne@69: /* FormatTypeName.proto */ jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: typedef PyObject *__Pyx_TypeName; jpayne@69: #define __Pyx_FMT_TYPENAME "%U" jpayne@69: static __Pyx_TypeName __Pyx_PyType_GetName(PyTypeObject* tp); jpayne@69: #define __Pyx_DECREF_TypeName(obj) Py_XDECREF(obj) jpayne@69: #else jpayne@69: typedef const char *__Pyx_TypeName; jpayne@69: #define __Pyx_FMT_TYPENAME "%.200s" jpayne@69: #define __Pyx_PyType_GetName(tp) ((tp)->tp_name) jpayne@69: #define __Pyx_DECREF_TypeName(obj) jpayne@69: #endif jpayne@69: jpayne@69: /* CIntToPy.proto */ jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); jpayne@69: jpayne@69: /* CIntFromPy.proto */ jpayne@69: static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); jpayne@69: jpayne@69: /* FastTypeChecks.proto */ jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON jpayne@69: #define __Pyx_TypeCheck(obj, type) __Pyx_IsSubtype(Py_TYPE(obj), (PyTypeObject *)type) jpayne@69: #define __Pyx_TypeCheck2(obj, type1, type2) __Pyx_IsAnySubtype2(Py_TYPE(obj), (PyTypeObject *)type1, (PyTypeObject *)type2) jpayne@69: static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b); jpayne@69: static CYTHON_INLINE int __Pyx_IsAnySubtype2(PyTypeObject *cls, PyTypeObject *a, PyTypeObject *b); jpayne@69: static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject *type); jpayne@69: static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *type1, PyObject *type2); jpayne@69: #else jpayne@69: #define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) jpayne@69: #define __Pyx_TypeCheck2(obj, type1, type2) (PyObject_TypeCheck(obj, (PyTypeObject *)type1) || PyObject_TypeCheck(obj, (PyTypeObject *)type2)) jpayne@69: #define __Pyx_PyErr_GivenExceptionMatches(err, type) PyErr_GivenExceptionMatches(err, type) jpayne@69: #define __Pyx_PyErr_GivenExceptionMatches2(err, type1, type2) (PyErr_GivenExceptionMatches(err, type1) || PyErr_GivenExceptionMatches(err, type2)) jpayne@69: #endif jpayne@69: #define __Pyx_PyErr_ExceptionMatches2(err1, err2) __Pyx_PyErr_GivenExceptionMatches2(__Pyx_PyErr_CurrentExceptionType(), err1, err2) jpayne@69: #define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception) jpayne@69: jpayne@69: /* CheckBinaryVersion.proto */ jpayne@69: static unsigned long __Pyx_get_runtime_version(void); jpayne@69: static int __Pyx_check_binary_version(unsigned long ct_version, unsigned long rt_version, int allow_newer); jpayne@69: jpayne@69: /* InitStrings.proto */ jpayne@69: static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); jpayne@69: jpayne@69: /* #### Code section: module_declarations ### */ jpayne@69: static CYTHON_INLINE double __pyx_f_7cpython_7complex_7complex_4real_real(PyComplexObject *__pyx_v_self); /* proto*/ jpayne@69: static CYTHON_INLINE double __pyx_f_7cpython_7complex_7complex_4imag_imag(PyComplexObject *__pyx_v_self); /* proto*/ jpayne@69: jpayne@69: /* Module declarations from "libc.stdint" */ jpayne@69: jpayne@69: /* Module declarations from "libc.string" */ jpayne@69: jpayne@69: /* Module declarations from "libc.stdlib" */ jpayne@69: jpayne@69: /* Module declarations from "libc.stdio" */ jpayne@69: jpayne@69: /* Module declarations from "cython" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.version" */ jpayne@69: jpayne@69: /* Module declarations from "__builtin__" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.type" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.object" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.ref" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.exc" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.module" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.mem" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.tuple" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.list" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.sequence" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.mapping" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.iterator" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.number" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.int" */ jpayne@69: jpayne@69: /* Module declarations from "__builtin__" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.bool" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.long" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.float" */ jpayne@69: jpayne@69: /* Module declarations from "__builtin__" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.complex" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.string" */ jpayne@69: jpayne@69: /* Module declarations from "libc.stddef" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.unicode" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.pyport" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.dict" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.instance" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.function" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.method" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.weakref" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.getargs" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.pythread" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.pystate" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.cobject" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.oldbuffer" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.set" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.buffer" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.bytes" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.pycapsule" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.contextvars" */ jpayne@69: jpayne@69: /* Module declarations from "cpython" */ jpayne@69: jpayne@69: /* Module declarations from "array" */ jpayne@69: jpayne@69: /* Module declarations from "cpython.array" */ jpayne@69: static CYTHON_INLINE int __pyx_f_7cpython_5array_extend_buffer(arrayobject *, char *, Py_ssize_t); /*proto*/ jpayne@69: jpayne@69: /* Module declarations from "posix.types" */ jpayne@69: jpayne@69: /* Module declarations from "pysam.libchtslib" */ jpayne@69: jpayne@69: /* Module declarations from "pysam.libcfaidx" */ jpayne@69: jpayne@69: /* Module declarations from "pysam.libcalignedsegment" */ jpayne@69: jpayne@69: /* Module declarations from "pysam.libcalignmentfile" */ jpayne@69: jpayne@69: /* Module declarations from "pysam.libcsamfile" */ jpayne@69: /* #### Code section: typeinfo ### */ jpayne@69: /* #### Code section: before_global_var ### */ jpayne@69: #define __Pyx_MODULE_NAME "pysam.libcsamfile" jpayne@69: extern int __pyx_module_is_main_pysam__libcsamfile; jpayne@69: int __pyx_module_is_main_pysam__libcsamfile = 0; jpayne@69: jpayne@69: /* Implementation of "pysam.libcsamfile" */ jpayne@69: /* #### Code section: global_var ### */ jpayne@69: static PyObject *__pyx_builtin_TypeError; jpayne@69: static PyObject *__pyx_builtin_MemoryError; jpayne@69: /* #### Code section: string_decls ### */ jpayne@69: static const char __pyx_k__5[] = "*"; jpayne@69: static const char __pyx_k__8[] = "?"; jpayne@69: static const char __pyx_k_gc[] = "gc"; jpayne@69: static const char __pyx_k_os[] = "os"; jpayne@69: static const char __pyx_k_re[] = "re"; jpayne@69: static const char __pyx_k_all[] = "__all__"; jpayne@69: static const char __pyx_k_sys[] = "sys"; jpayne@69: static const char __pyx_k_main[] = "__main__"; jpayne@69: static const char __pyx_k_name[] = "__name__"; jpayne@69: static const char __pyx_k_self[] = "self"; jpayne@69: static const char __pyx_k_spec[] = "__spec__"; jpayne@69: static const char __pyx_k_test[] = "__test__"; jpayne@69: static const char __pyx_k_types[] = "types"; jpayne@69: static const char __pyx_k_ctypes[] = "ctypes"; jpayne@69: static const char __pyx_k_enable[] = "enable"; jpayne@69: static const char __pyx_k_import[] = "__import__"; jpayne@69: static const char __pyx_k_reduce[] = "__reduce__"; jpayne@69: static const char __pyx_k_struct[] = "struct"; jpayne@69: static const char __pyx_k_Samfile[] = "Samfile"; jpayne@69: static const char __pyx_k_disable[] = "disable"; jpayne@69: static const char __pyx_k_getstate[] = "__getstate__"; jpayne@69: static const char __pyx_k_platform[] = "platform"; jpayne@69: static const char __pyx_k_setstate[] = "__setstate__"; jpayne@69: static const char __pyx_k_tempfile[] = "tempfile"; jpayne@69: static const char __pyx_k_warnings[] = "warnings"; jpayne@69: static const char __pyx_k_TypeError[] = "TypeError"; jpayne@69: static const char __pyx_k_isenabled[] = "isenabled"; jpayne@69: static const char __pyx_k_itertools[] = "itertools"; jpayne@69: static const char __pyx_k_pyx_state[] = "__pyx_state"; jpayne@69: static const char __pyx_k_reduce_ex[] = "__reduce_ex__"; jpayne@69: static const char __pyx_k_pyx_vtable[] = "__pyx_vtable__"; jpayne@69: static const char __pyx_k_AlignedRead[] = "AlignedRead"; jpayne@69: static const char __pyx_k_MemoryError[] = "MemoryError"; jpayne@69: static const char __pyx_k_collections[] = "collections"; jpayne@69: static const char __pyx_k_initializing[] = "_initializing"; jpayne@69: static const char __pyx_k_is_coroutine[] = "_is_coroutine"; jpayne@69: static const char __pyx_k_stringsource[] = ""; jpayne@69: static const char __pyx_k_reduce_cython[] = "__reduce_cython__"; jpayne@69: static const char __pyx_k_setstate_cython[] = "__setstate_cython__"; jpayne@69: static const char __pyx_k_pysam_libcsamfile[] = "pysam.libcsamfile"; jpayne@69: static const char __pyx_k_asyncio_coroutines[] = "asyncio.coroutines"; jpayne@69: static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback"; jpayne@69: static const char __pyx_k_Samfile___reduce_cython[] = "Samfile.__reduce_cython__"; jpayne@69: static const char __pyx_k_Samfile___setstate_cython[] = "Samfile.__setstate_cython__"; jpayne@69: static const char __pyx_k_AlignedRead___reduce_cython[] = "AlignedRead.__reduce_cython__"; jpayne@69: static const char __pyx_k_AlignedRead___setstate_cython[] = "AlignedRead.__setstate_cython__"; jpayne@69: static const char __pyx_k_self__delegate_cannot_be_convert[] = "self._delegate cannot be converted to a Python object for pickling"; jpayne@69: static const char __pyx_k_self_b_self_htsfile_self_index_c[] = "self.b,self.htsfile,self.index cannot be converted to a Python object for pickling"; jpayne@69: /* #### Code section: decls ### */ jpayne@69: static int __pyx_pf_7cpython_5array_5array___getbuffer__(arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info, CYTHON_UNUSED int __pyx_v_flags); /* proto */ jpayne@69: static void __pyx_pf_7cpython_5array_5array_2__releasebuffer__(CYTHON_UNUSED arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ jpayne@69: static PyObject *__pyx_pf_5pysam_11libcsamfile_7Samfile___reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_11libcsamfile_Samfile *__pyx_v_self); /* proto */ jpayne@69: static PyObject *__pyx_pf_5pysam_11libcsamfile_7Samfile_2__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_11libcsamfile_Samfile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */ jpayne@69: static PyObject *__pyx_pf_5pysam_11libcsamfile_11AlignedRead___reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_11libcsamfile_AlignedRead *__pyx_v_self); /* proto */ jpayne@69: static PyObject *__pyx_pf_5pysam_11libcsamfile_11AlignedRead_2__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_11libcsamfile_AlignedRead *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */ jpayne@69: static PyObject *__pyx_tp_new_5pysam_11libcsamfile_AlignedRead(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ jpayne@69: static PyObject *__pyx_tp_new_5pysam_11libcsamfile_Samfile(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ jpayne@69: /* #### Code section: late_includes ### */ jpayne@69: /* #### Code section: module_state ### */ jpayne@69: typedef struct { jpayne@69: PyObject *__pyx_d; jpayne@69: PyObject *__pyx_b; jpayne@69: PyObject *__pyx_cython_runtime; jpayne@69: PyObject *__pyx_empty_tuple; jpayne@69: PyObject *__pyx_empty_bytes; jpayne@69: PyObject *__pyx_empty_unicode; jpayne@69: #ifdef __Pyx_CyFunction_USED jpayne@69: PyTypeObject *__pyx_CyFunctionType; jpayne@69: #endif jpayne@69: #ifdef __Pyx_FusedFunction_USED jpayne@69: PyTypeObject *__pyx_FusedFunctionType; jpayne@69: #endif jpayne@69: #ifdef __Pyx_Generator_USED jpayne@69: PyTypeObject *__pyx_GeneratorType; jpayne@69: #endif jpayne@69: #ifdef __Pyx_IterableCoroutine_USED jpayne@69: PyTypeObject *__pyx_IterableCoroutineType; jpayne@69: #endif jpayne@69: #ifdef __Pyx_Coroutine_USED jpayne@69: PyTypeObject *__pyx_CoroutineAwaitType; jpayne@69: #endif jpayne@69: #ifdef __Pyx_Coroutine_USED jpayne@69: PyTypeObject *__pyx_CoroutineType; jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: PyTypeObject *__pyx_ptype_7cpython_4type_type; jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: PyTypeObject *__pyx_ptype_7cpython_4bool_bool; jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: PyTypeObject *__pyx_ptype_7cpython_7complex_complex; jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: PyTypeObject *__pyx_ptype_7cpython_5array_array; jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: PyTypeObject *__pyx_ptype_5pysam_10libchtslib_HTSFile; jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: PyTypeObject *__pyx_ptype_5pysam_9libcfaidx_FastaFile; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_9libcfaidx_FastqProxy; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_9libcfaidx_FastxRecord; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_9libcfaidx_FastxFile; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_9libcfaidx_FastqFile; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_9libcfaidx_Fastafile; jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: PyTypeObject *__pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_18libcalignedsegment_PileupColumn; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_18libcalignedsegment_PileupRead; jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_AlignmentHeader; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorRow; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowRegion; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowHead; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAll; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAllRefs; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowSelection; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumn; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnRegion; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAllRefs; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAll; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IndexedReads; jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: PyObject *__pyx_type_5pysam_11libcsamfile_AlignedRead; jpayne@69: PyObject *__pyx_type_5pysam_11libcsamfile_Samfile; jpayne@69: #endif jpayne@69: PyTypeObject *__pyx_ptype_5pysam_11libcsamfile_AlignedRead; jpayne@69: PyTypeObject *__pyx_ptype_5pysam_11libcsamfile_Samfile; jpayne@69: PyObject *__pyx_n_s_AlignedRead; jpayne@69: PyObject *__pyx_n_u_AlignedRead; jpayne@69: PyObject *__pyx_n_s_AlignedRead___reduce_cython; jpayne@69: PyObject *__pyx_n_s_AlignedRead___setstate_cython; jpayne@69: PyObject *__pyx_n_s_MemoryError; jpayne@69: PyObject *__pyx_n_s_Samfile; jpayne@69: PyObject *__pyx_n_u_Samfile; jpayne@69: PyObject *__pyx_n_s_Samfile___reduce_cython; jpayne@69: PyObject *__pyx_n_s_Samfile___setstate_cython; jpayne@69: PyObject *__pyx_n_s_TypeError; jpayne@69: PyObject *__pyx_n_s__5; jpayne@69: PyObject *__pyx_n_s__8; jpayne@69: PyObject *__pyx_n_s_all; jpayne@69: PyObject *__pyx_n_s_asyncio_coroutines; jpayne@69: PyObject *__pyx_n_s_cline_in_traceback; jpayne@69: PyObject *__pyx_n_s_collections; jpayne@69: PyObject *__pyx_n_s_ctypes; jpayne@69: PyObject *__pyx_kp_u_disable; jpayne@69: PyObject *__pyx_kp_u_enable; jpayne@69: PyObject *__pyx_kp_u_gc; jpayne@69: PyObject *__pyx_n_s_getstate; jpayne@69: PyObject *__pyx_n_s_import; jpayne@69: PyObject *__pyx_n_s_initializing; jpayne@69: PyObject *__pyx_n_s_is_coroutine; jpayne@69: PyObject *__pyx_kp_u_isenabled; jpayne@69: PyObject *__pyx_n_s_itertools; jpayne@69: PyObject *__pyx_n_s_main; jpayne@69: PyObject *__pyx_n_s_name; jpayne@69: PyObject *__pyx_n_s_os; jpayne@69: PyObject *__pyx_n_s_platform; jpayne@69: PyObject *__pyx_n_s_pysam_libcsamfile; jpayne@69: PyObject *__pyx_n_s_pyx_state; jpayne@69: PyObject *__pyx_n_s_pyx_vtable; jpayne@69: PyObject *__pyx_n_s_re; jpayne@69: PyObject *__pyx_n_s_reduce; jpayne@69: PyObject *__pyx_n_s_reduce_cython; jpayne@69: PyObject *__pyx_n_s_reduce_ex; jpayne@69: PyObject *__pyx_n_s_self; jpayne@69: PyObject *__pyx_kp_s_self__delegate_cannot_be_convert; jpayne@69: PyObject *__pyx_kp_s_self_b_self_htsfile_self_index_c; jpayne@69: PyObject *__pyx_n_s_setstate; jpayne@69: PyObject *__pyx_n_s_setstate_cython; jpayne@69: PyObject *__pyx_n_s_spec; jpayne@69: PyObject *__pyx_kp_s_stringsource; jpayne@69: PyObject *__pyx_n_s_struct; jpayne@69: PyObject *__pyx_n_s_sys; jpayne@69: PyObject *__pyx_n_s_tempfile; jpayne@69: PyObject *__pyx_n_s_test; jpayne@69: PyObject *__pyx_n_s_types; jpayne@69: PyObject *__pyx_n_s_warnings; jpayne@69: PyObject *__pyx_codeobj_; jpayne@69: PyObject *__pyx_tuple__6; jpayne@69: PyObject *__pyx_tuple__7; jpayne@69: PyObject *__pyx_codeobj__2; jpayne@69: PyObject *__pyx_codeobj__3; jpayne@69: PyObject *__pyx_codeobj__4; jpayne@69: } __pyx_mstate; jpayne@69: jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #ifdef __cplusplus jpayne@69: namespace { jpayne@69: extern struct PyModuleDef __pyx_moduledef; jpayne@69: } /* anonymous namespace */ jpayne@69: #else jpayne@69: static struct PyModuleDef __pyx_moduledef; jpayne@69: #endif jpayne@69: jpayne@69: #define __pyx_mstate(o) ((__pyx_mstate *)__Pyx_PyModule_GetState(o)) jpayne@69: jpayne@69: #define __pyx_mstate_global (__pyx_mstate(PyState_FindModule(&__pyx_moduledef))) jpayne@69: jpayne@69: #define __pyx_m (PyState_FindModule(&__pyx_moduledef)) jpayne@69: #else jpayne@69: static __pyx_mstate __pyx_mstate_global_static = jpayne@69: #ifdef __cplusplus jpayne@69: {}; jpayne@69: #else jpayne@69: {0}; jpayne@69: #endif jpayne@69: static __pyx_mstate *__pyx_mstate_global = &__pyx_mstate_global_static; jpayne@69: #endif jpayne@69: /* #### Code section: module_state_clear ### */ jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: static int __pyx_m_clear(PyObject *m) { jpayne@69: __pyx_mstate *clear_module_state = __pyx_mstate(m); jpayne@69: if (!clear_module_state) return 0; jpayne@69: Py_CLEAR(clear_module_state->__pyx_d); jpayne@69: Py_CLEAR(clear_module_state->__pyx_b); jpayne@69: Py_CLEAR(clear_module_state->__pyx_cython_runtime); jpayne@69: Py_CLEAR(clear_module_state->__pyx_empty_tuple); jpayne@69: Py_CLEAR(clear_module_state->__pyx_empty_bytes); jpayne@69: Py_CLEAR(clear_module_state->__pyx_empty_unicode); jpayne@69: #ifdef __Pyx_CyFunction_USED jpayne@69: Py_CLEAR(clear_module_state->__pyx_CyFunctionType); jpayne@69: #endif jpayne@69: #ifdef __Pyx_FusedFunction_USED jpayne@69: Py_CLEAR(clear_module_state->__pyx_FusedFunctionType); jpayne@69: #endif jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_7cpython_4type_type); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_7cpython_4bool_bool); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_7cpython_7complex_complex); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_7cpython_5array_array); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_10libchtslib_HTSFile); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_9libcfaidx_FastaFile); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_9libcfaidx_FastqProxy); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_9libcfaidx_FastxRecord); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_9libcfaidx_FastxFile); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_9libcfaidx_FastqFile); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_9libcfaidx_Fastafile); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_18libcalignedsegment_PileupColumn); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_18libcalignedsegment_PileupRead); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_17libcalignmentfile_AlignmentHeader); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorRow); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowRegion); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowHead); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAll); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAllRefs); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowSelection); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumn); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnRegion); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAllRefs); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAll); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IndexedReads); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_11libcsamfile_AlignedRead); jpayne@69: Py_CLEAR(clear_module_state->__pyx_type_5pysam_11libcsamfile_AlignedRead); jpayne@69: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_11libcsamfile_Samfile); jpayne@69: Py_CLEAR(clear_module_state->__pyx_type_5pysam_11libcsamfile_Samfile); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_AlignedRead); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_u_AlignedRead); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_AlignedRead___reduce_cython); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_AlignedRead___setstate_cython); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_MemoryError); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_Samfile); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_u_Samfile); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_Samfile___reduce_cython); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_Samfile___setstate_cython); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_TypeError); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s__5); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s__8); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_all); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_asyncio_coroutines); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_cline_in_traceback); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_collections); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_ctypes); jpayne@69: Py_CLEAR(clear_module_state->__pyx_kp_u_disable); jpayne@69: Py_CLEAR(clear_module_state->__pyx_kp_u_enable); jpayne@69: Py_CLEAR(clear_module_state->__pyx_kp_u_gc); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_getstate); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_import); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_initializing); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_is_coroutine); jpayne@69: Py_CLEAR(clear_module_state->__pyx_kp_u_isenabled); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_itertools); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_main); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_name); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_os); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_platform); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_pysam_libcsamfile); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_pyx_state); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_pyx_vtable); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_re); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_reduce); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_reduce_cython); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_reduce_ex); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_self); jpayne@69: Py_CLEAR(clear_module_state->__pyx_kp_s_self__delegate_cannot_be_convert); jpayne@69: Py_CLEAR(clear_module_state->__pyx_kp_s_self_b_self_htsfile_self_index_c); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_setstate); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_setstate_cython); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_spec); jpayne@69: Py_CLEAR(clear_module_state->__pyx_kp_s_stringsource); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_struct); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_sys); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_tempfile); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_test); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_types); jpayne@69: Py_CLEAR(clear_module_state->__pyx_n_s_warnings); jpayne@69: Py_CLEAR(clear_module_state->__pyx_codeobj_); jpayne@69: Py_CLEAR(clear_module_state->__pyx_tuple__6); jpayne@69: Py_CLEAR(clear_module_state->__pyx_tuple__7); jpayne@69: Py_CLEAR(clear_module_state->__pyx_codeobj__2); jpayne@69: Py_CLEAR(clear_module_state->__pyx_codeobj__3); jpayne@69: Py_CLEAR(clear_module_state->__pyx_codeobj__4); jpayne@69: return 0; jpayne@69: } jpayne@69: #endif jpayne@69: /* #### Code section: module_state_traverse ### */ jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: static int __pyx_m_traverse(PyObject *m, visitproc visit, void *arg) { jpayne@69: __pyx_mstate *traverse_module_state = __pyx_mstate(m); jpayne@69: if (!traverse_module_state) return 0; jpayne@69: Py_VISIT(traverse_module_state->__pyx_d); jpayne@69: Py_VISIT(traverse_module_state->__pyx_b); jpayne@69: Py_VISIT(traverse_module_state->__pyx_cython_runtime); jpayne@69: Py_VISIT(traverse_module_state->__pyx_empty_tuple); jpayne@69: Py_VISIT(traverse_module_state->__pyx_empty_bytes); jpayne@69: Py_VISIT(traverse_module_state->__pyx_empty_unicode); jpayne@69: #ifdef __Pyx_CyFunction_USED jpayne@69: Py_VISIT(traverse_module_state->__pyx_CyFunctionType); jpayne@69: #endif jpayne@69: #ifdef __Pyx_FusedFunction_USED jpayne@69: Py_VISIT(traverse_module_state->__pyx_FusedFunctionType); jpayne@69: #endif jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_7cpython_4type_type); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_7cpython_4bool_bool); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_7cpython_7complex_complex); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_7cpython_5array_array); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_10libchtslib_HTSFile); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_9libcfaidx_FastaFile); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_9libcfaidx_FastqProxy); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_9libcfaidx_FastxRecord); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_9libcfaidx_FastxFile); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_9libcfaidx_FastqFile); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_9libcfaidx_Fastafile); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_18libcalignedsegment_PileupColumn); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_18libcalignedsegment_PileupRead); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_17libcalignmentfile_AlignmentHeader); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorRow); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowRegion); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowHead); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAll); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAllRefs); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowSelection); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumn); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnRegion); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAllRefs); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAll); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_17libcalignmentfile_IndexedReads); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_11libcsamfile_AlignedRead); jpayne@69: Py_VISIT(traverse_module_state->__pyx_type_5pysam_11libcsamfile_AlignedRead); jpayne@69: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_11libcsamfile_Samfile); jpayne@69: Py_VISIT(traverse_module_state->__pyx_type_5pysam_11libcsamfile_Samfile); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_AlignedRead); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_u_AlignedRead); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_AlignedRead___reduce_cython); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_AlignedRead___setstate_cython); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_MemoryError); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_Samfile); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_u_Samfile); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_Samfile___reduce_cython); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_Samfile___setstate_cython); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_TypeError); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s__5); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s__8); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_all); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_asyncio_coroutines); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_cline_in_traceback); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_collections); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_ctypes); jpayne@69: Py_VISIT(traverse_module_state->__pyx_kp_u_disable); jpayne@69: Py_VISIT(traverse_module_state->__pyx_kp_u_enable); jpayne@69: Py_VISIT(traverse_module_state->__pyx_kp_u_gc); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_getstate); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_import); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_initializing); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_is_coroutine); jpayne@69: Py_VISIT(traverse_module_state->__pyx_kp_u_isenabled); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_itertools); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_main); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_name); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_os); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_platform); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_pysam_libcsamfile); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_pyx_state); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_pyx_vtable); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_re); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_reduce); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_reduce_cython); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_reduce_ex); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_self); jpayne@69: Py_VISIT(traverse_module_state->__pyx_kp_s_self__delegate_cannot_be_convert); jpayne@69: Py_VISIT(traverse_module_state->__pyx_kp_s_self_b_self_htsfile_self_index_c); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_setstate); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_setstate_cython); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_spec); jpayne@69: Py_VISIT(traverse_module_state->__pyx_kp_s_stringsource); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_struct); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_sys); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_tempfile); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_test); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_types); jpayne@69: Py_VISIT(traverse_module_state->__pyx_n_s_warnings); jpayne@69: Py_VISIT(traverse_module_state->__pyx_codeobj_); jpayne@69: Py_VISIT(traverse_module_state->__pyx_tuple__6); jpayne@69: Py_VISIT(traverse_module_state->__pyx_tuple__7); jpayne@69: Py_VISIT(traverse_module_state->__pyx_codeobj__2); jpayne@69: Py_VISIT(traverse_module_state->__pyx_codeobj__3); jpayne@69: Py_VISIT(traverse_module_state->__pyx_codeobj__4); jpayne@69: return 0; jpayne@69: } jpayne@69: #endif jpayne@69: /* #### Code section: module_state_defines ### */ jpayne@69: #define __pyx_d __pyx_mstate_global->__pyx_d jpayne@69: #define __pyx_b __pyx_mstate_global->__pyx_b jpayne@69: #define __pyx_cython_runtime __pyx_mstate_global->__pyx_cython_runtime jpayne@69: #define __pyx_empty_tuple __pyx_mstate_global->__pyx_empty_tuple jpayne@69: #define __pyx_empty_bytes __pyx_mstate_global->__pyx_empty_bytes jpayne@69: #define __pyx_empty_unicode __pyx_mstate_global->__pyx_empty_unicode jpayne@69: #ifdef __Pyx_CyFunction_USED jpayne@69: #define __pyx_CyFunctionType __pyx_mstate_global->__pyx_CyFunctionType jpayne@69: #endif jpayne@69: #ifdef __Pyx_FusedFunction_USED jpayne@69: #define __pyx_FusedFunctionType __pyx_mstate_global->__pyx_FusedFunctionType jpayne@69: #endif jpayne@69: #ifdef __Pyx_Generator_USED jpayne@69: #define __pyx_GeneratorType __pyx_mstate_global->__pyx_GeneratorType jpayne@69: #endif jpayne@69: #ifdef __Pyx_IterableCoroutine_USED jpayne@69: #define __pyx_IterableCoroutineType __pyx_mstate_global->__pyx_IterableCoroutineType jpayne@69: #endif jpayne@69: #ifdef __Pyx_Coroutine_USED jpayne@69: #define __pyx_CoroutineAwaitType __pyx_mstate_global->__pyx_CoroutineAwaitType jpayne@69: #endif jpayne@69: #ifdef __Pyx_Coroutine_USED jpayne@69: #define __pyx_CoroutineType __pyx_mstate_global->__pyx_CoroutineType jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #define __pyx_ptype_7cpython_4type_type __pyx_mstate_global->__pyx_ptype_7cpython_4type_type jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #define __pyx_ptype_7cpython_4bool_bool __pyx_mstate_global->__pyx_ptype_7cpython_4bool_bool jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #define __pyx_ptype_7cpython_7complex_complex __pyx_mstate_global->__pyx_ptype_7cpython_7complex_complex jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #define __pyx_ptype_7cpython_5array_array __pyx_mstate_global->__pyx_ptype_7cpython_5array_array jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #define __pyx_ptype_5pysam_10libchtslib_HTSFile __pyx_mstate_global->__pyx_ptype_5pysam_10libchtslib_HTSFile jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #define __pyx_ptype_5pysam_9libcfaidx_FastaFile __pyx_mstate_global->__pyx_ptype_5pysam_9libcfaidx_FastaFile jpayne@69: #define __pyx_ptype_5pysam_9libcfaidx_FastqProxy __pyx_mstate_global->__pyx_ptype_5pysam_9libcfaidx_FastqProxy jpayne@69: #define __pyx_ptype_5pysam_9libcfaidx_FastxRecord __pyx_mstate_global->__pyx_ptype_5pysam_9libcfaidx_FastxRecord jpayne@69: #define __pyx_ptype_5pysam_9libcfaidx_FastxFile __pyx_mstate_global->__pyx_ptype_5pysam_9libcfaidx_FastxFile jpayne@69: #define __pyx_ptype_5pysam_9libcfaidx_FastqFile __pyx_mstate_global->__pyx_ptype_5pysam_9libcfaidx_FastqFile jpayne@69: #define __pyx_ptype_5pysam_9libcfaidx_Fastafile __pyx_mstate_global->__pyx_ptype_5pysam_9libcfaidx_Fastafile jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #define __pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment __pyx_mstate_global->__pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment jpayne@69: #define __pyx_ptype_5pysam_18libcalignedsegment_PileupColumn __pyx_mstate_global->__pyx_ptype_5pysam_18libcalignedsegment_PileupColumn jpayne@69: #define __pyx_ptype_5pysam_18libcalignedsegment_PileupRead __pyx_mstate_global->__pyx_ptype_5pysam_18libcalignedsegment_PileupRead jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #endif jpayne@69: #define __pyx_ptype_5pysam_17libcalignmentfile_AlignmentHeader __pyx_mstate_global->__pyx_ptype_5pysam_17libcalignmentfile_AlignmentHeader jpayne@69: #define __pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile __pyx_mstate_global->__pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile jpayne@69: #define __pyx_ptype_5pysam_17libcalignmentfile_IteratorRow __pyx_mstate_global->__pyx_ptype_5pysam_17libcalignmentfile_IteratorRow jpayne@69: #define __pyx_ptype_5pysam_17libcalignmentfile_IteratorRowRegion __pyx_mstate_global->__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowRegion jpayne@69: #define __pyx_ptype_5pysam_17libcalignmentfile_IteratorRowHead __pyx_mstate_global->__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowHead jpayne@69: #define __pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAll __pyx_mstate_global->__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAll jpayne@69: #define __pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAllRefs __pyx_mstate_global->__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAllRefs jpayne@69: #define __pyx_ptype_5pysam_17libcalignmentfile_IteratorRowSelection __pyx_mstate_global->__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowSelection jpayne@69: #define __pyx_ptype_5pysam_17libcalignmentfile_IteratorColumn __pyx_mstate_global->__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumn jpayne@69: #define __pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnRegion __pyx_mstate_global->__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnRegion jpayne@69: #define __pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAllRefs __pyx_mstate_global->__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAllRefs jpayne@69: #define __pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAll __pyx_mstate_global->__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAll jpayne@69: #define __pyx_ptype_5pysam_17libcalignmentfile_IndexedReads __pyx_mstate_global->__pyx_ptype_5pysam_17libcalignmentfile_IndexedReads jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: #define __pyx_type_5pysam_11libcsamfile_AlignedRead __pyx_mstate_global->__pyx_type_5pysam_11libcsamfile_AlignedRead jpayne@69: #define __pyx_type_5pysam_11libcsamfile_Samfile __pyx_mstate_global->__pyx_type_5pysam_11libcsamfile_Samfile jpayne@69: #endif jpayne@69: #define __pyx_ptype_5pysam_11libcsamfile_AlignedRead __pyx_mstate_global->__pyx_ptype_5pysam_11libcsamfile_AlignedRead jpayne@69: #define __pyx_ptype_5pysam_11libcsamfile_Samfile __pyx_mstate_global->__pyx_ptype_5pysam_11libcsamfile_Samfile jpayne@69: #define __pyx_n_s_AlignedRead __pyx_mstate_global->__pyx_n_s_AlignedRead jpayne@69: #define __pyx_n_u_AlignedRead __pyx_mstate_global->__pyx_n_u_AlignedRead jpayne@69: #define __pyx_n_s_AlignedRead___reduce_cython __pyx_mstate_global->__pyx_n_s_AlignedRead___reduce_cython jpayne@69: #define __pyx_n_s_AlignedRead___setstate_cython __pyx_mstate_global->__pyx_n_s_AlignedRead___setstate_cython jpayne@69: #define __pyx_n_s_MemoryError __pyx_mstate_global->__pyx_n_s_MemoryError jpayne@69: #define __pyx_n_s_Samfile __pyx_mstate_global->__pyx_n_s_Samfile jpayne@69: #define __pyx_n_u_Samfile __pyx_mstate_global->__pyx_n_u_Samfile jpayne@69: #define __pyx_n_s_Samfile___reduce_cython __pyx_mstate_global->__pyx_n_s_Samfile___reduce_cython jpayne@69: #define __pyx_n_s_Samfile___setstate_cython __pyx_mstate_global->__pyx_n_s_Samfile___setstate_cython jpayne@69: #define __pyx_n_s_TypeError __pyx_mstate_global->__pyx_n_s_TypeError jpayne@69: #define __pyx_n_s__5 __pyx_mstate_global->__pyx_n_s__5 jpayne@69: #define __pyx_n_s__8 __pyx_mstate_global->__pyx_n_s__8 jpayne@69: #define __pyx_n_s_all __pyx_mstate_global->__pyx_n_s_all jpayne@69: #define __pyx_n_s_asyncio_coroutines __pyx_mstate_global->__pyx_n_s_asyncio_coroutines jpayne@69: #define __pyx_n_s_cline_in_traceback __pyx_mstate_global->__pyx_n_s_cline_in_traceback jpayne@69: #define __pyx_n_s_collections __pyx_mstate_global->__pyx_n_s_collections jpayne@69: #define __pyx_n_s_ctypes __pyx_mstate_global->__pyx_n_s_ctypes jpayne@69: #define __pyx_kp_u_disable __pyx_mstate_global->__pyx_kp_u_disable jpayne@69: #define __pyx_kp_u_enable __pyx_mstate_global->__pyx_kp_u_enable jpayne@69: #define __pyx_kp_u_gc __pyx_mstate_global->__pyx_kp_u_gc jpayne@69: #define __pyx_n_s_getstate __pyx_mstate_global->__pyx_n_s_getstate jpayne@69: #define __pyx_n_s_import __pyx_mstate_global->__pyx_n_s_import jpayne@69: #define __pyx_n_s_initializing __pyx_mstate_global->__pyx_n_s_initializing jpayne@69: #define __pyx_n_s_is_coroutine __pyx_mstate_global->__pyx_n_s_is_coroutine jpayne@69: #define __pyx_kp_u_isenabled __pyx_mstate_global->__pyx_kp_u_isenabled jpayne@69: #define __pyx_n_s_itertools __pyx_mstate_global->__pyx_n_s_itertools jpayne@69: #define __pyx_n_s_main __pyx_mstate_global->__pyx_n_s_main jpayne@69: #define __pyx_n_s_name __pyx_mstate_global->__pyx_n_s_name jpayne@69: #define __pyx_n_s_os __pyx_mstate_global->__pyx_n_s_os jpayne@69: #define __pyx_n_s_platform __pyx_mstate_global->__pyx_n_s_platform jpayne@69: #define __pyx_n_s_pysam_libcsamfile __pyx_mstate_global->__pyx_n_s_pysam_libcsamfile jpayne@69: #define __pyx_n_s_pyx_state __pyx_mstate_global->__pyx_n_s_pyx_state jpayne@69: #define __pyx_n_s_pyx_vtable __pyx_mstate_global->__pyx_n_s_pyx_vtable jpayne@69: #define __pyx_n_s_re __pyx_mstate_global->__pyx_n_s_re jpayne@69: #define __pyx_n_s_reduce __pyx_mstate_global->__pyx_n_s_reduce jpayne@69: #define __pyx_n_s_reduce_cython __pyx_mstate_global->__pyx_n_s_reduce_cython jpayne@69: #define __pyx_n_s_reduce_ex __pyx_mstate_global->__pyx_n_s_reduce_ex jpayne@69: #define __pyx_n_s_self __pyx_mstate_global->__pyx_n_s_self jpayne@69: #define __pyx_kp_s_self__delegate_cannot_be_convert __pyx_mstate_global->__pyx_kp_s_self__delegate_cannot_be_convert jpayne@69: #define __pyx_kp_s_self_b_self_htsfile_self_index_c __pyx_mstate_global->__pyx_kp_s_self_b_self_htsfile_self_index_c jpayne@69: #define __pyx_n_s_setstate __pyx_mstate_global->__pyx_n_s_setstate jpayne@69: #define __pyx_n_s_setstate_cython __pyx_mstate_global->__pyx_n_s_setstate_cython jpayne@69: #define __pyx_n_s_spec __pyx_mstate_global->__pyx_n_s_spec jpayne@69: #define __pyx_kp_s_stringsource __pyx_mstate_global->__pyx_kp_s_stringsource jpayne@69: #define __pyx_n_s_struct __pyx_mstate_global->__pyx_n_s_struct jpayne@69: #define __pyx_n_s_sys __pyx_mstate_global->__pyx_n_s_sys jpayne@69: #define __pyx_n_s_tempfile __pyx_mstate_global->__pyx_n_s_tempfile jpayne@69: #define __pyx_n_s_test __pyx_mstate_global->__pyx_n_s_test jpayne@69: #define __pyx_n_s_types __pyx_mstate_global->__pyx_n_s_types jpayne@69: #define __pyx_n_s_warnings __pyx_mstate_global->__pyx_n_s_warnings jpayne@69: #define __pyx_codeobj_ __pyx_mstate_global->__pyx_codeobj_ jpayne@69: #define __pyx_tuple__6 __pyx_mstate_global->__pyx_tuple__6 jpayne@69: #define __pyx_tuple__7 __pyx_mstate_global->__pyx_tuple__7 jpayne@69: #define __pyx_codeobj__2 __pyx_mstate_global->__pyx_codeobj__2 jpayne@69: #define __pyx_codeobj__3 __pyx_mstate_global->__pyx_codeobj__3 jpayne@69: #define __pyx_codeobj__4 __pyx_mstate_global->__pyx_codeobj__4 jpayne@69: /* #### Code section: module_code ### */ jpayne@69: jpayne@69: /* "cpython/complex.pxd":19 jpayne@69: * jpayne@69: * @property jpayne@69: * cdef inline double real(self) noexcept: # <<<<<<<<<<<<<< jpayne@69: * return self.cval.real jpayne@69: * jpayne@69: */ jpayne@69: jpayne@69: static CYTHON_INLINE double __pyx_f_7cpython_7complex_7complex_4real_real(PyComplexObject *__pyx_v_self) { jpayne@69: double __pyx_r; jpayne@69: jpayne@69: /* "cpython/complex.pxd":20 jpayne@69: * @property jpayne@69: * cdef inline double real(self) noexcept: jpayne@69: * return self.cval.real # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * @property jpayne@69: */ jpayne@69: __pyx_r = __pyx_v_self->cval.real; jpayne@69: goto __pyx_L0; jpayne@69: jpayne@69: /* "cpython/complex.pxd":19 jpayne@69: * jpayne@69: * @property jpayne@69: * cdef inline double real(self) noexcept: # <<<<<<<<<<<<<< jpayne@69: * return self.cval.real jpayne@69: * jpayne@69: */ jpayne@69: jpayne@69: /* function exit code */ jpayne@69: __pyx_L0:; jpayne@69: return __pyx_r; jpayne@69: } jpayne@69: jpayne@69: /* "cpython/complex.pxd":23 jpayne@69: * jpayne@69: * @property jpayne@69: * cdef inline double imag(self) noexcept: # <<<<<<<<<<<<<< jpayne@69: * return self.cval.imag jpayne@69: * jpayne@69: */ jpayne@69: jpayne@69: static CYTHON_INLINE double __pyx_f_7cpython_7complex_7complex_4imag_imag(PyComplexObject *__pyx_v_self) { jpayne@69: double __pyx_r; jpayne@69: jpayne@69: /* "cpython/complex.pxd":24 jpayne@69: * @property jpayne@69: * cdef inline double imag(self) noexcept: jpayne@69: * return self.cval.imag # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * # PyTypeObject PyComplex_Type jpayne@69: */ jpayne@69: __pyx_r = __pyx_v_self->cval.imag; jpayne@69: goto __pyx_L0; jpayne@69: jpayne@69: /* "cpython/complex.pxd":23 jpayne@69: * jpayne@69: * @property jpayne@69: * cdef inline double imag(self) noexcept: # <<<<<<<<<<<<<< jpayne@69: * return self.cval.imag jpayne@69: * jpayne@69: */ jpayne@69: jpayne@69: /* function exit code */ jpayne@69: __pyx_L0:; jpayne@69: return __pyx_r; jpayne@69: } jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":112 jpayne@69: * jpayne@69: * jpayne@69: * cdef inline object get_value(var, default_value=None): # <<<<<<<<<<<<<< jpayne@69: * """Return a new reference to the value of the context variable, jpayne@69: * or the default value of the context variable, jpayne@69: */ jpayne@69: jpayne@69: static CYTHON_INLINE PyObject *__pyx_f_7cpython_11contextvars_get_value(PyObject *__pyx_v_var, struct __pyx_opt_args_7cpython_11contextvars_get_value *__pyx_optional_args) { jpayne@69: PyObject *__pyx_v_default_value = ((PyObject *)Py_None); jpayne@69: PyObject *__pyx_v_value; jpayne@69: PyObject *__pyx_v_pyvalue = NULL; jpayne@69: PyObject *__pyx_r = NULL; jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: int __pyx_t_1; jpayne@69: int __pyx_t_2; jpayne@69: PyObject *__pyx_t_3 = NULL; jpayne@69: int __pyx_lineno = 0; jpayne@69: const char *__pyx_filename = NULL; jpayne@69: int __pyx_clineno = 0; jpayne@69: __Pyx_RefNannySetupContext("get_value", 1); jpayne@69: if (__pyx_optional_args) { jpayne@69: if (__pyx_optional_args->__pyx_n > 0) { jpayne@69: __pyx_v_default_value = __pyx_optional_args->default_value; jpayne@69: } jpayne@69: } jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":117 jpayne@69: * or None if no such value or default was found. jpayne@69: * """ jpayne@69: * cdef PyObject *value = NULL # <<<<<<<<<<<<<< jpayne@69: * PyContextVar_Get(var, NULL, &value) jpayne@69: * if value is NULL: jpayne@69: */ jpayne@69: __pyx_v_value = NULL; jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":118 jpayne@69: * """ jpayne@69: * cdef PyObject *value = NULL jpayne@69: * PyContextVar_Get(var, NULL, &value) # <<<<<<<<<<<<<< jpayne@69: * if value is NULL: jpayne@69: * # context variable does not have a default jpayne@69: */ jpayne@69: __pyx_t_1 = PyContextVar_Get(__pyx_v_var, NULL, (&__pyx_v_value)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(1, 118, __pyx_L1_error) jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":119 jpayne@69: * cdef PyObject *value = NULL jpayne@69: * PyContextVar_Get(var, NULL, &value) jpayne@69: * if value is NULL: # <<<<<<<<<<<<<< jpayne@69: * # context variable does not have a default jpayne@69: * pyvalue = default_value jpayne@69: */ jpayne@69: __pyx_t_2 = (__pyx_v_value == NULL); jpayne@69: if (__pyx_t_2) { jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":121 jpayne@69: * if value is NULL: jpayne@69: * # context variable does not have a default jpayne@69: * pyvalue = default_value # <<<<<<<<<<<<<< jpayne@69: * else: jpayne@69: * # value or default value of context variable jpayne@69: */ jpayne@69: __Pyx_INCREF(__pyx_v_default_value); jpayne@69: __pyx_v_pyvalue = __pyx_v_default_value; jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":119 jpayne@69: * cdef PyObject *value = NULL jpayne@69: * PyContextVar_Get(var, NULL, &value) jpayne@69: * if value is NULL: # <<<<<<<<<<<<<< jpayne@69: * # context variable does not have a default jpayne@69: * pyvalue = default_value jpayne@69: */ jpayne@69: goto __pyx_L3; jpayne@69: } jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":124 jpayne@69: * else: jpayne@69: * # value or default value of context variable jpayne@69: * pyvalue = value # <<<<<<<<<<<<<< jpayne@69: * Py_XDECREF(value) # PyContextVar_Get() returned an owned reference as 'PyObject*' jpayne@69: * return pyvalue jpayne@69: */ jpayne@69: /*else*/ { jpayne@69: __pyx_t_3 = ((PyObject *)__pyx_v_value); jpayne@69: __Pyx_INCREF(__pyx_t_3); jpayne@69: __pyx_v_pyvalue = __pyx_t_3; jpayne@69: __pyx_t_3 = 0; jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":125 jpayne@69: * # value or default value of context variable jpayne@69: * pyvalue = value jpayne@69: * Py_XDECREF(value) # PyContextVar_Get() returned an owned reference as 'PyObject*' # <<<<<<<<<<<<<< jpayne@69: * return pyvalue jpayne@69: * jpayne@69: */ jpayne@69: Py_XDECREF(__pyx_v_value); jpayne@69: } jpayne@69: __pyx_L3:; jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":126 jpayne@69: * pyvalue = value jpayne@69: * Py_XDECREF(value) # PyContextVar_Get() returned an owned reference as 'PyObject*' jpayne@69: * return pyvalue # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * jpayne@69: */ jpayne@69: __Pyx_XDECREF(__pyx_r); jpayne@69: __Pyx_INCREF(__pyx_v_pyvalue); jpayne@69: __pyx_r = __pyx_v_pyvalue; jpayne@69: goto __pyx_L0; jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":112 jpayne@69: * jpayne@69: * jpayne@69: * cdef inline object get_value(var, default_value=None): # <<<<<<<<<<<<<< jpayne@69: * """Return a new reference to the value of the context variable, jpayne@69: * or the default value of the context variable, jpayne@69: */ jpayne@69: jpayne@69: /* function exit code */ jpayne@69: __pyx_L1_error:; jpayne@69: __Pyx_XDECREF(__pyx_t_3); jpayne@69: __Pyx_AddTraceback("cpython.contextvars.get_value", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@69: __pyx_r = 0; jpayne@69: __pyx_L0:; jpayne@69: __Pyx_XDECREF(__pyx_v_pyvalue); jpayne@69: __Pyx_XGIVEREF(__pyx_r); jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return __pyx_r; jpayne@69: } jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":129 jpayne@69: * jpayne@69: * jpayne@69: * cdef inline object get_value_no_default(var, default_value=None): # <<<<<<<<<<<<<< jpayne@69: * """Return a new reference to the value of the context variable, jpayne@69: * or the provided default value if no such value was found. jpayne@69: */ jpayne@69: jpayne@69: static CYTHON_INLINE PyObject *__pyx_f_7cpython_11contextvars_get_value_no_default(PyObject *__pyx_v_var, struct __pyx_opt_args_7cpython_11contextvars_get_value_no_default *__pyx_optional_args) { jpayne@69: PyObject *__pyx_v_default_value = ((PyObject *)Py_None); jpayne@69: PyObject *__pyx_v_value; jpayne@69: PyObject *__pyx_v_pyvalue = NULL; jpayne@69: PyObject *__pyx_r = NULL; jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: int __pyx_t_1; jpayne@69: PyObject *__pyx_t_2 = NULL; jpayne@69: int __pyx_lineno = 0; jpayne@69: const char *__pyx_filename = NULL; jpayne@69: int __pyx_clineno = 0; jpayne@69: __Pyx_RefNannySetupContext("get_value_no_default", 1); jpayne@69: if (__pyx_optional_args) { jpayne@69: if (__pyx_optional_args->__pyx_n > 0) { jpayne@69: __pyx_v_default_value = __pyx_optional_args->default_value; jpayne@69: } jpayne@69: } jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":135 jpayne@69: * Ignores the default value of the context variable, if any. jpayne@69: * """ jpayne@69: * cdef PyObject *value = NULL # <<<<<<<<<<<<<< jpayne@69: * PyContextVar_Get(var, default_value, &value) jpayne@69: * # value of context variable or 'default_value' jpayne@69: */ jpayne@69: __pyx_v_value = NULL; jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":136 jpayne@69: * """ jpayne@69: * cdef PyObject *value = NULL jpayne@69: * PyContextVar_Get(var, default_value, &value) # <<<<<<<<<<<<<< jpayne@69: * # value of context variable or 'default_value' jpayne@69: * pyvalue = value jpayne@69: */ jpayne@69: __pyx_t_1 = PyContextVar_Get(__pyx_v_var, ((PyObject *)__pyx_v_default_value), (&__pyx_v_value)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(1, 136, __pyx_L1_error) jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":138 jpayne@69: * PyContextVar_Get(var, default_value, &value) jpayne@69: * # value of context variable or 'default_value' jpayne@69: * pyvalue = value # <<<<<<<<<<<<<< jpayne@69: * Py_XDECREF(value) # PyContextVar_Get() returned an owned reference as 'PyObject*' jpayne@69: * return pyvalue jpayne@69: */ jpayne@69: __pyx_t_2 = ((PyObject *)__pyx_v_value); jpayne@69: __Pyx_INCREF(__pyx_t_2); jpayne@69: __pyx_v_pyvalue = __pyx_t_2; jpayne@69: __pyx_t_2 = 0; jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":139 jpayne@69: * # value of context variable or 'default_value' jpayne@69: * pyvalue = value jpayne@69: * Py_XDECREF(value) # PyContextVar_Get() returned an owned reference as 'PyObject*' # <<<<<<<<<<<<<< jpayne@69: * return pyvalue jpayne@69: */ jpayne@69: Py_XDECREF(__pyx_v_value); jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":140 jpayne@69: * pyvalue = value jpayne@69: * Py_XDECREF(value) # PyContextVar_Get() returned an owned reference as 'PyObject*' jpayne@69: * return pyvalue # <<<<<<<<<<<<<< jpayne@69: */ jpayne@69: __Pyx_XDECREF(__pyx_r); jpayne@69: __Pyx_INCREF(__pyx_v_pyvalue); jpayne@69: __pyx_r = __pyx_v_pyvalue; jpayne@69: goto __pyx_L0; jpayne@69: jpayne@69: /* "cpython/contextvars.pxd":129 jpayne@69: * jpayne@69: * jpayne@69: * cdef inline object get_value_no_default(var, default_value=None): # <<<<<<<<<<<<<< jpayne@69: * """Return a new reference to the value of the context variable, jpayne@69: * or the provided default value if no such value was found. jpayne@69: */ jpayne@69: jpayne@69: /* function exit code */ jpayne@69: __pyx_L1_error:; jpayne@69: __Pyx_XDECREF(__pyx_t_2); jpayne@69: __Pyx_AddTraceback("cpython.contextvars.get_value_no_default", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@69: __pyx_r = 0; jpayne@69: __pyx_L0:; jpayne@69: __Pyx_XDECREF(__pyx_v_pyvalue); jpayne@69: __Pyx_XGIVEREF(__pyx_r); jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return __pyx_r; jpayne@69: } jpayne@69: jpayne@69: /* "array.pxd":104 jpayne@69: * __data_union data jpayne@69: * jpayne@69: * def __getbuffer__(self, Py_buffer* info, int flags): # <<<<<<<<<<<<<< jpayne@69: * # This implementation of getbuffer is geared towards Cython jpayne@69: * # requirements, and does not yet fulfill the PEP. jpayne@69: */ jpayne@69: jpayne@69: /* Python wrapper */ jpayne@69: CYTHON_UNUSED static int __pyx_pw_7cpython_5array_5array_1__getbuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/ jpayne@69: CYTHON_UNUSED static int __pyx_pw_7cpython_5array_5array_1__getbuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) { jpayne@69: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@69: int __pyx_r; jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: __Pyx_RefNannySetupContext("__getbuffer__ (wrapper)", 0); jpayne@69: __pyx_kwvalues = __Pyx_KwValues_VARARGS(__pyx_args, __pyx_nargs); jpayne@69: __pyx_r = __pyx_pf_7cpython_5array_5array___getbuffer__(((arrayobject *)__pyx_v_self), ((Py_buffer *)__pyx_v_info), ((int)__pyx_v_flags)); jpayne@69: jpayne@69: /* function exit code */ jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return __pyx_r; jpayne@69: } jpayne@69: jpayne@69: static int __pyx_pf_7cpython_5array_5array___getbuffer__(arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info, CYTHON_UNUSED int __pyx_v_flags) { jpayne@69: PyObject *__pyx_v_item_count = NULL; jpayne@69: int __pyx_r; jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: PyObject *__pyx_t_1 = NULL; jpayne@69: char *__pyx_t_2; jpayne@69: int __pyx_t_3; jpayne@69: PyObject *__pyx_t_4 = NULL; jpayne@69: Py_ssize_t __pyx_t_5; jpayne@69: int __pyx_t_6; jpayne@69: char __pyx_t_7; jpayne@69: int __pyx_lineno = 0; jpayne@69: const char *__pyx_filename = NULL; jpayne@69: int __pyx_clineno = 0; jpayne@69: if (unlikely(__pyx_v_info == NULL)) { jpayne@69: PyErr_SetString(PyExc_BufferError, "PyObject_GetBuffer: view==NULL argument is obsolete"); jpayne@69: return -1; jpayne@69: } jpayne@69: __Pyx_RefNannySetupContext("__getbuffer__", 0); jpayne@69: __pyx_v_info->obj = Py_None; __Pyx_INCREF(Py_None); jpayne@69: __Pyx_GIVEREF(__pyx_v_info->obj); jpayne@69: jpayne@69: /* "array.pxd":109 jpayne@69: * # In particular strided access is always provided regardless jpayne@69: * # of flags jpayne@69: * item_count = Py_SIZE(self) # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * info.suboffsets = NULL jpayne@69: */ jpayne@69: __pyx_t_1 = PyInt_FromSsize_t(Py_SIZE(((PyObject *)__pyx_v_self))); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 109, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_1); jpayne@69: __pyx_v_item_count = __pyx_t_1; jpayne@69: __pyx_t_1 = 0; jpayne@69: jpayne@69: /* "array.pxd":111 jpayne@69: * item_count = Py_SIZE(self) jpayne@69: * jpayne@69: * info.suboffsets = NULL # <<<<<<<<<<<<<< jpayne@69: * info.buf = self.data.as_chars jpayne@69: * info.readonly = 0 jpayne@69: */ jpayne@69: __pyx_v_info->suboffsets = NULL; jpayne@69: jpayne@69: /* "array.pxd":112 jpayne@69: * jpayne@69: * info.suboffsets = NULL jpayne@69: * info.buf = self.data.as_chars # <<<<<<<<<<<<<< jpayne@69: * info.readonly = 0 jpayne@69: * info.ndim = 1 jpayne@69: */ jpayne@69: __pyx_t_2 = __pyx_v_self->data.as_chars; jpayne@69: __pyx_v_info->buf = __pyx_t_2; jpayne@69: jpayne@69: /* "array.pxd":113 jpayne@69: * info.suboffsets = NULL jpayne@69: * info.buf = self.data.as_chars jpayne@69: * info.readonly = 0 # <<<<<<<<<<<<<< jpayne@69: * info.ndim = 1 jpayne@69: * info.itemsize = self.ob_descr.itemsize # e.g. sizeof(float) jpayne@69: */ jpayne@69: __pyx_v_info->readonly = 0; jpayne@69: jpayne@69: /* "array.pxd":114 jpayne@69: * info.buf = self.data.as_chars jpayne@69: * info.readonly = 0 jpayne@69: * info.ndim = 1 # <<<<<<<<<<<<<< jpayne@69: * info.itemsize = self.ob_descr.itemsize # e.g. sizeof(float) jpayne@69: * info.len = info.itemsize * item_count jpayne@69: */ jpayne@69: __pyx_v_info->ndim = 1; jpayne@69: jpayne@69: /* "array.pxd":115 jpayne@69: * info.readonly = 0 jpayne@69: * info.ndim = 1 jpayne@69: * info.itemsize = self.ob_descr.itemsize # e.g. sizeof(float) # <<<<<<<<<<<<<< jpayne@69: * info.len = info.itemsize * item_count jpayne@69: * jpayne@69: */ jpayne@69: __pyx_t_3 = __pyx_v_self->ob_descr->itemsize; jpayne@69: __pyx_v_info->itemsize = __pyx_t_3; jpayne@69: jpayne@69: /* "array.pxd":116 jpayne@69: * info.ndim = 1 jpayne@69: * info.itemsize = self.ob_descr.itemsize # e.g. sizeof(float) jpayne@69: * info.len = info.itemsize * item_count # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * info.shape = PyObject_Malloc(sizeof(Py_ssize_t) + 2) jpayne@69: */ jpayne@69: __pyx_t_1 = PyInt_FromSsize_t(__pyx_v_info->itemsize); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 116, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_1); jpayne@69: __pyx_t_4 = PyNumber_Multiply(__pyx_t_1, __pyx_v_item_count); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 116, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_4); jpayne@69: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@69: __pyx_t_5 = __Pyx_PyIndex_AsSsize_t(__pyx_t_4); if (unlikely((__pyx_t_5 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(2, 116, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; jpayne@69: __pyx_v_info->len = __pyx_t_5; jpayne@69: jpayne@69: /* "array.pxd":118 jpayne@69: * info.len = info.itemsize * item_count jpayne@69: * jpayne@69: * info.shape = PyObject_Malloc(sizeof(Py_ssize_t) + 2) # <<<<<<<<<<<<<< jpayne@69: * if not info.shape: jpayne@69: * raise MemoryError() jpayne@69: */ jpayne@69: __pyx_v_info->shape = ((Py_ssize_t *)PyObject_Malloc(((sizeof(Py_ssize_t)) + 2))); jpayne@69: jpayne@69: /* "array.pxd":119 jpayne@69: * jpayne@69: * info.shape = PyObject_Malloc(sizeof(Py_ssize_t) + 2) jpayne@69: * if not info.shape: # <<<<<<<<<<<<<< jpayne@69: * raise MemoryError() jpayne@69: * info.shape[0] = item_count # constant regardless of resizing jpayne@69: */ jpayne@69: __pyx_t_6 = (!(__pyx_v_info->shape != 0)); jpayne@69: if (unlikely(__pyx_t_6)) { jpayne@69: jpayne@69: /* "array.pxd":120 jpayne@69: * info.shape = PyObject_Malloc(sizeof(Py_ssize_t) + 2) jpayne@69: * if not info.shape: jpayne@69: * raise MemoryError() # <<<<<<<<<<<<<< jpayne@69: * info.shape[0] = item_count # constant regardless of resizing jpayne@69: * info.strides = &info.itemsize jpayne@69: */ jpayne@69: PyErr_NoMemory(); __PYX_ERR(2, 120, __pyx_L1_error) jpayne@69: jpayne@69: /* "array.pxd":119 jpayne@69: * jpayne@69: * info.shape = PyObject_Malloc(sizeof(Py_ssize_t) + 2) jpayne@69: * if not info.shape: # <<<<<<<<<<<<<< jpayne@69: * raise MemoryError() jpayne@69: * info.shape[0] = item_count # constant regardless of resizing jpayne@69: */ jpayne@69: } jpayne@69: jpayne@69: /* "array.pxd":121 jpayne@69: * if not info.shape: jpayne@69: * raise MemoryError() jpayne@69: * info.shape[0] = item_count # constant regardless of resizing # <<<<<<<<<<<<<< jpayne@69: * info.strides = &info.itemsize jpayne@69: * jpayne@69: */ jpayne@69: __pyx_t_5 = __Pyx_PyIndex_AsSsize_t(__pyx_v_item_count); if (unlikely((__pyx_t_5 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(2, 121, __pyx_L1_error) jpayne@69: (__pyx_v_info->shape[0]) = __pyx_t_5; jpayne@69: jpayne@69: /* "array.pxd":122 jpayne@69: * raise MemoryError() jpayne@69: * info.shape[0] = item_count # constant regardless of resizing jpayne@69: * info.strides = &info.itemsize # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * info.format = (info.shape + 1) jpayne@69: */ jpayne@69: __pyx_v_info->strides = (&__pyx_v_info->itemsize); jpayne@69: jpayne@69: /* "array.pxd":124 jpayne@69: * info.strides = &info.itemsize jpayne@69: * jpayne@69: * info.format = (info.shape + 1) # <<<<<<<<<<<<<< jpayne@69: * info.format[0] = self.ob_descr.typecode jpayne@69: * info.format[1] = 0 jpayne@69: */ jpayne@69: __pyx_v_info->format = ((char *)(__pyx_v_info->shape + 1)); jpayne@69: jpayne@69: /* "array.pxd":125 jpayne@69: * jpayne@69: * info.format = (info.shape + 1) jpayne@69: * info.format[0] = self.ob_descr.typecode # <<<<<<<<<<<<<< jpayne@69: * info.format[1] = 0 jpayne@69: * info.obj = self jpayne@69: */ jpayne@69: __pyx_t_7 = __pyx_v_self->ob_descr->typecode; jpayne@69: (__pyx_v_info->format[0]) = __pyx_t_7; jpayne@69: jpayne@69: /* "array.pxd":126 jpayne@69: * info.format = (info.shape + 1) jpayne@69: * info.format[0] = self.ob_descr.typecode jpayne@69: * info.format[1] = 0 # <<<<<<<<<<<<<< jpayne@69: * info.obj = self jpayne@69: * jpayne@69: */ jpayne@69: (__pyx_v_info->format[1]) = 0; jpayne@69: jpayne@69: /* "array.pxd":127 jpayne@69: * info.format[0] = self.ob_descr.typecode jpayne@69: * info.format[1] = 0 jpayne@69: * info.obj = self # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * def __releasebuffer__(self, Py_buffer* info): jpayne@69: */ jpayne@69: __Pyx_INCREF((PyObject *)__pyx_v_self); jpayne@69: __Pyx_GIVEREF((PyObject *)__pyx_v_self); jpayne@69: __Pyx_GOTREF(__pyx_v_info->obj); jpayne@69: __Pyx_DECREF(__pyx_v_info->obj); jpayne@69: __pyx_v_info->obj = ((PyObject *)__pyx_v_self); jpayne@69: jpayne@69: /* "array.pxd":104 jpayne@69: * __data_union data jpayne@69: * jpayne@69: * def __getbuffer__(self, Py_buffer* info, int flags): # <<<<<<<<<<<<<< jpayne@69: * # This implementation of getbuffer is geared towards Cython jpayne@69: * # requirements, and does not yet fulfill the PEP. jpayne@69: */ jpayne@69: jpayne@69: /* function exit code */ jpayne@69: __pyx_r = 0; jpayne@69: goto __pyx_L0; jpayne@69: __pyx_L1_error:; jpayne@69: __Pyx_XDECREF(__pyx_t_1); jpayne@69: __Pyx_XDECREF(__pyx_t_4); jpayne@69: __Pyx_AddTraceback("cpython.array.array.__getbuffer__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@69: __pyx_r = -1; jpayne@69: if (__pyx_v_info->obj != NULL) { jpayne@69: __Pyx_GOTREF(__pyx_v_info->obj); jpayne@69: __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = 0; jpayne@69: } jpayne@69: goto __pyx_L2; jpayne@69: __pyx_L0:; jpayne@69: if (__pyx_v_info->obj == Py_None) { jpayne@69: __Pyx_GOTREF(__pyx_v_info->obj); jpayne@69: __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = 0; jpayne@69: } jpayne@69: __pyx_L2:; jpayne@69: __Pyx_XDECREF(__pyx_v_item_count); jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return __pyx_r; jpayne@69: } jpayne@69: jpayne@69: /* "array.pxd":129 jpayne@69: * info.obj = self jpayne@69: * jpayne@69: * def __releasebuffer__(self, Py_buffer* info): # <<<<<<<<<<<<<< jpayne@69: * PyObject_Free(info.shape) jpayne@69: * jpayne@69: */ jpayne@69: jpayne@69: /* Python wrapper */ jpayne@69: CYTHON_UNUSED static void __pyx_pw_7cpython_5array_5array_3__releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info); /*proto*/ jpayne@69: CYTHON_UNUSED static void __pyx_pw_7cpython_5array_5array_3__releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info) { jpayne@69: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: __Pyx_RefNannySetupContext("__releasebuffer__ (wrapper)", 0); jpayne@69: __pyx_kwvalues = __Pyx_KwValues_VARARGS(__pyx_args, __pyx_nargs); jpayne@69: __pyx_pf_7cpython_5array_5array_2__releasebuffer__(((arrayobject *)__pyx_v_self), ((Py_buffer *)__pyx_v_info)); jpayne@69: jpayne@69: /* function exit code */ jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: } jpayne@69: jpayne@69: static void __pyx_pf_7cpython_5array_5array_2__releasebuffer__(CYTHON_UNUSED arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info) { jpayne@69: jpayne@69: /* "array.pxd":130 jpayne@69: * jpayne@69: * def __releasebuffer__(self, Py_buffer* info): jpayne@69: * PyObject_Free(info.shape) # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * array newarrayobject(PyTypeObject* type, Py_ssize_t size, arraydescr *descr) jpayne@69: */ jpayne@69: PyObject_Free(__pyx_v_info->shape); jpayne@69: jpayne@69: /* "array.pxd":129 jpayne@69: * info.obj = self jpayne@69: * jpayne@69: * def __releasebuffer__(self, Py_buffer* info): # <<<<<<<<<<<<<< jpayne@69: * PyObject_Free(info.shape) jpayne@69: * jpayne@69: */ jpayne@69: jpayne@69: /* function exit code */ jpayne@69: } jpayne@69: jpayne@69: /* "array.pxd":141 jpayne@69: * jpayne@69: * jpayne@69: * cdef inline array clone(array template, Py_ssize_t length, bint zero): # <<<<<<<<<<<<<< jpayne@69: * """ fast creation of a new array, given a template array. jpayne@69: * type will be same as template. jpayne@69: */ jpayne@69: jpayne@69: static CYTHON_INLINE arrayobject *__pyx_f_7cpython_5array_clone(arrayobject *__pyx_v_template, Py_ssize_t __pyx_v_length, int __pyx_v_zero) { jpayne@69: arrayobject *__pyx_v_op = 0; jpayne@69: arrayobject *__pyx_r = NULL; jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: PyObject *__pyx_t_1 = NULL; jpayne@69: int __pyx_t_2; jpayne@69: int __pyx_t_3; jpayne@69: int __pyx_lineno = 0; jpayne@69: const char *__pyx_filename = NULL; jpayne@69: int __pyx_clineno = 0; jpayne@69: __Pyx_RefNannySetupContext("clone", 1); jpayne@69: jpayne@69: /* "array.pxd":145 jpayne@69: * type will be same as template. jpayne@69: * if zero is true, new array will be initialized with zeroes.""" jpayne@69: * cdef array op = newarrayobject(Py_TYPE(template), length, template.ob_descr) # <<<<<<<<<<<<<< jpayne@69: * if zero and op is not None: jpayne@69: * memset(op.data.as_chars, 0, length * op.ob_descr.itemsize) jpayne@69: */ jpayne@69: __pyx_t_1 = ((PyObject *)newarrayobject(Py_TYPE(((PyObject *)__pyx_v_template)), __pyx_v_length, __pyx_v_template->ob_descr)); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 145, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_1); jpayne@69: __pyx_v_op = ((arrayobject *)__pyx_t_1); jpayne@69: __pyx_t_1 = 0; jpayne@69: jpayne@69: /* "array.pxd":146 jpayne@69: * if zero is true, new array will be initialized with zeroes.""" jpayne@69: * cdef array op = newarrayobject(Py_TYPE(template), length, template.ob_descr) jpayne@69: * if zero and op is not None: # <<<<<<<<<<<<<< jpayne@69: * memset(op.data.as_chars, 0, length * op.ob_descr.itemsize) jpayne@69: * return op jpayne@69: */ jpayne@69: if (__pyx_v_zero) { jpayne@69: } else { jpayne@69: __pyx_t_2 = __pyx_v_zero; jpayne@69: goto __pyx_L4_bool_binop_done; jpayne@69: } jpayne@69: __pyx_t_3 = (((PyObject *)__pyx_v_op) != Py_None); jpayne@69: __pyx_t_2 = __pyx_t_3; jpayne@69: __pyx_L4_bool_binop_done:; jpayne@69: if (__pyx_t_2) { jpayne@69: jpayne@69: /* "array.pxd":147 jpayne@69: * cdef array op = newarrayobject(Py_TYPE(template), length, template.ob_descr) jpayne@69: * if zero and op is not None: jpayne@69: * memset(op.data.as_chars, 0, length * op.ob_descr.itemsize) # <<<<<<<<<<<<<< jpayne@69: * return op jpayne@69: * jpayne@69: */ jpayne@69: (void)(memset(__pyx_v_op->data.as_chars, 0, (__pyx_v_length * __pyx_v_op->ob_descr->itemsize))); jpayne@69: jpayne@69: /* "array.pxd":146 jpayne@69: * if zero is true, new array will be initialized with zeroes.""" jpayne@69: * cdef array op = newarrayobject(Py_TYPE(template), length, template.ob_descr) jpayne@69: * if zero and op is not None: # <<<<<<<<<<<<<< jpayne@69: * memset(op.data.as_chars, 0, length * op.ob_descr.itemsize) jpayne@69: * return op jpayne@69: */ jpayne@69: } jpayne@69: jpayne@69: /* "array.pxd":148 jpayne@69: * if zero and op is not None: jpayne@69: * memset(op.data.as_chars, 0, length * op.ob_descr.itemsize) jpayne@69: * return op # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * cdef inline array copy(array self): jpayne@69: */ jpayne@69: __Pyx_XDECREF((PyObject *)__pyx_r); jpayne@69: __Pyx_INCREF((PyObject *)__pyx_v_op); jpayne@69: __pyx_r = __pyx_v_op; jpayne@69: goto __pyx_L0; jpayne@69: jpayne@69: /* "array.pxd":141 jpayne@69: * jpayne@69: * jpayne@69: * cdef inline array clone(array template, Py_ssize_t length, bint zero): # <<<<<<<<<<<<<< jpayne@69: * """ fast creation of a new array, given a template array. jpayne@69: * type will be same as template. jpayne@69: */ jpayne@69: jpayne@69: /* function exit code */ jpayne@69: __pyx_L1_error:; jpayne@69: __Pyx_XDECREF(__pyx_t_1); jpayne@69: __Pyx_AddTraceback("cpython.array.clone", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@69: __pyx_r = 0; jpayne@69: __pyx_L0:; jpayne@69: __Pyx_XDECREF((PyObject *)__pyx_v_op); jpayne@69: __Pyx_XGIVEREF((PyObject *)__pyx_r); jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return __pyx_r; jpayne@69: } jpayne@69: jpayne@69: /* "array.pxd":150 jpayne@69: * return op jpayne@69: * jpayne@69: * cdef inline array copy(array self): # <<<<<<<<<<<<<< jpayne@69: * """ make a copy of an array. """ jpayne@69: * cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr) jpayne@69: */ jpayne@69: jpayne@69: static CYTHON_INLINE arrayobject *__pyx_f_7cpython_5array_copy(arrayobject *__pyx_v_self) { jpayne@69: arrayobject *__pyx_v_op = 0; jpayne@69: arrayobject *__pyx_r = NULL; jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: PyObject *__pyx_t_1 = NULL; jpayne@69: int __pyx_lineno = 0; jpayne@69: const char *__pyx_filename = NULL; jpayne@69: int __pyx_clineno = 0; jpayne@69: __Pyx_RefNannySetupContext("copy", 1); jpayne@69: jpayne@69: /* "array.pxd":152 jpayne@69: * cdef inline array copy(array self): jpayne@69: * """ make a copy of an array. """ jpayne@69: * cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr) # <<<<<<<<<<<<<< jpayne@69: * memcpy(op.data.as_chars, self.data.as_chars, Py_SIZE(op) * op.ob_descr.itemsize) jpayne@69: * return op jpayne@69: */ jpayne@69: __pyx_t_1 = ((PyObject *)newarrayobject(Py_TYPE(((PyObject *)__pyx_v_self)), Py_SIZE(((PyObject *)__pyx_v_self)), __pyx_v_self->ob_descr)); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 152, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_1); jpayne@69: __pyx_v_op = ((arrayobject *)__pyx_t_1); jpayne@69: __pyx_t_1 = 0; jpayne@69: jpayne@69: /* "array.pxd":153 jpayne@69: * """ make a copy of an array. """ jpayne@69: * cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr) jpayne@69: * memcpy(op.data.as_chars, self.data.as_chars, Py_SIZE(op) * op.ob_descr.itemsize) # <<<<<<<<<<<<<< jpayne@69: * return op jpayne@69: * jpayne@69: */ jpayne@69: (void)(memcpy(__pyx_v_op->data.as_chars, __pyx_v_self->data.as_chars, (Py_SIZE(((PyObject *)__pyx_v_op)) * __pyx_v_op->ob_descr->itemsize))); jpayne@69: jpayne@69: /* "array.pxd":154 jpayne@69: * cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr) jpayne@69: * memcpy(op.data.as_chars, self.data.as_chars, Py_SIZE(op) * op.ob_descr.itemsize) jpayne@69: * return op # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * cdef inline int extend_buffer(array self, char* stuff, Py_ssize_t n) except -1: jpayne@69: */ jpayne@69: __Pyx_XDECREF((PyObject *)__pyx_r); jpayne@69: __Pyx_INCREF((PyObject *)__pyx_v_op); jpayne@69: __pyx_r = __pyx_v_op; jpayne@69: goto __pyx_L0; jpayne@69: jpayne@69: /* "array.pxd":150 jpayne@69: * return op jpayne@69: * jpayne@69: * cdef inline array copy(array self): # <<<<<<<<<<<<<< jpayne@69: * """ make a copy of an array. """ jpayne@69: * cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr) jpayne@69: */ jpayne@69: jpayne@69: /* function exit code */ jpayne@69: __pyx_L1_error:; jpayne@69: __Pyx_XDECREF(__pyx_t_1); jpayne@69: __Pyx_AddTraceback("cpython.array.copy", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@69: __pyx_r = 0; jpayne@69: __pyx_L0:; jpayne@69: __Pyx_XDECREF((PyObject *)__pyx_v_op); jpayne@69: __Pyx_XGIVEREF((PyObject *)__pyx_r); jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return __pyx_r; jpayne@69: } jpayne@69: jpayne@69: /* "array.pxd":156 jpayne@69: * return op jpayne@69: * jpayne@69: * cdef inline int extend_buffer(array self, char* stuff, Py_ssize_t n) except -1: # <<<<<<<<<<<<<< jpayne@69: * """ efficient appending of new stuff of same type jpayne@69: * (e.g. of same array type) jpayne@69: */ jpayne@69: jpayne@69: static CYTHON_INLINE int __pyx_f_7cpython_5array_extend_buffer(arrayobject *__pyx_v_self, char *__pyx_v_stuff, Py_ssize_t __pyx_v_n) { jpayne@69: Py_ssize_t __pyx_v_itemsize; jpayne@69: Py_ssize_t __pyx_v_origsize; jpayne@69: int __pyx_r; jpayne@69: int __pyx_t_1; jpayne@69: int __pyx_lineno = 0; jpayne@69: const char *__pyx_filename = NULL; jpayne@69: int __pyx_clineno = 0; jpayne@69: jpayne@69: /* "array.pxd":160 jpayne@69: * (e.g. of same array type) jpayne@69: * n: number of elements (not number of bytes!) """ jpayne@69: * cdef Py_ssize_t itemsize = self.ob_descr.itemsize # <<<<<<<<<<<<<< jpayne@69: * cdef Py_ssize_t origsize = Py_SIZE(self) jpayne@69: * resize_smart(self, origsize + n) jpayne@69: */ jpayne@69: __pyx_t_1 = __pyx_v_self->ob_descr->itemsize; jpayne@69: __pyx_v_itemsize = __pyx_t_1; jpayne@69: jpayne@69: /* "array.pxd":161 jpayne@69: * n: number of elements (not number of bytes!) """ jpayne@69: * cdef Py_ssize_t itemsize = self.ob_descr.itemsize jpayne@69: * cdef Py_ssize_t origsize = Py_SIZE(self) # <<<<<<<<<<<<<< jpayne@69: * resize_smart(self, origsize + n) jpayne@69: * memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize) jpayne@69: */ jpayne@69: __pyx_v_origsize = Py_SIZE(((PyObject *)__pyx_v_self)); jpayne@69: jpayne@69: /* "array.pxd":162 jpayne@69: * cdef Py_ssize_t itemsize = self.ob_descr.itemsize jpayne@69: * cdef Py_ssize_t origsize = Py_SIZE(self) jpayne@69: * resize_smart(self, origsize + n) # <<<<<<<<<<<<<< jpayne@69: * memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize) jpayne@69: * return 0 jpayne@69: */ jpayne@69: __pyx_t_1 = resize_smart(__pyx_v_self, (__pyx_v_origsize + __pyx_v_n)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(2, 162, __pyx_L1_error) jpayne@69: jpayne@69: /* "array.pxd":163 jpayne@69: * cdef Py_ssize_t origsize = Py_SIZE(self) jpayne@69: * resize_smart(self, origsize + n) jpayne@69: * memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize) # <<<<<<<<<<<<<< jpayne@69: * return 0 jpayne@69: * jpayne@69: */ jpayne@69: (void)(memcpy((__pyx_v_self->data.as_chars + (__pyx_v_origsize * __pyx_v_itemsize)), __pyx_v_stuff, (__pyx_v_n * __pyx_v_itemsize))); jpayne@69: jpayne@69: /* "array.pxd":164 jpayne@69: * resize_smart(self, origsize + n) jpayne@69: * memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize) jpayne@69: * return 0 # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * cdef inline int extend(array self, array other) except -1: jpayne@69: */ jpayne@69: __pyx_r = 0; jpayne@69: goto __pyx_L0; jpayne@69: jpayne@69: /* "array.pxd":156 jpayne@69: * return op jpayne@69: * jpayne@69: * cdef inline int extend_buffer(array self, char* stuff, Py_ssize_t n) except -1: # <<<<<<<<<<<<<< jpayne@69: * """ efficient appending of new stuff of same type jpayne@69: * (e.g. of same array type) jpayne@69: */ jpayne@69: jpayne@69: /* function exit code */ jpayne@69: __pyx_L1_error:; jpayne@69: __Pyx_AddTraceback("cpython.array.extend_buffer", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@69: __pyx_r = -1; jpayne@69: __pyx_L0:; jpayne@69: return __pyx_r; jpayne@69: } jpayne@69: jpayne@69: /* "array.pxd":166 jpayne@69: * return 0 jpayne@69: * jpayne@69: * cdef inline int extend(array self, array other) except -1: # <<<<<<<<<<<<<< jpayne@69: * """ extend array with data from another array; types must match. """ jpayne@69: * if self.ob_descr.typecode != other.ob_descr.typecode: jpayne@69: */ jpayne@69: jpayne@69: static CYTHON_INLINE int __pyx_f_7cpython_5array_extend(arrayobject *__pyx_v_self, arrayobject *__pyx_v_other) { jpayne@69: int __pyx_r; jpayne@69: int __pyx_t_1; jpayne@69: int __pyx_t_2; jpayne@69: int __pyx_lineno = 0; jpayne@69: const char *__pyx_filename = NULL; jpayne@69: int __pyx_clineno = 0; jpayne@69: jpayne@69: /* "array.pxd":168 jpayne@69: * cdef inline int extend(array self, array other) except -1: jpayne@69: * """ extend array with data from another array; types must match. """ jpayne@69: * if self.ob_descr.typecode != other.ob_descr.typecode: # <<<<<<<<<<<<<< jpayne@69: * PyErr_BadArgument() jpayne@69: * return extend_buffer(self, other.data.as_chars, Py_SIZE(other)) jpayne@69: */ jpayne@69: __pyx_t_1 = (__pyx_v_self->ob_descr->typecode != __pyx_v_other->ob_descr->typecode); jpayne@69: if (__pyx_t_1) { jpayne@69: jpayne@69: /* "array.pxd":169 jpayne@69: * """ extend array with data from another array; types must match. """ jpayne@69: * if self.ob_descr.typecode != other.ob_descr.typecode: jpayne@69: * PyErr_BadArgument() # <<<<<<<<<<<<<< jpayne@69: * return extend_buffer(self, other.data.as_chars, Py_SIZE(other)) jpayne@69: * jpayne@69: */ jpayne@69: __pyx_t_2 = PyErr_BadArgument(); if (unlikely(__pyx_t_2 == ((int)0))) __PYX_ERR(2, 169, __pyx_L1_error) jpayne@69: jpayne@69: /* "array.pxd":168 jpayne@69: * cdef inline int extend(array self, array other) except -1: jpayne@69: * """ extend array with data from another array; types must match. """ jpayne@69: * if self.ob_descr.typecode != other.ob_descr.typecode: # <<<<<<<<<<<<<< jpayne@69: * PyErr_BadArgument() jpayne@69: * return extend_buffer(self, other.data.as_chars, Py_SIZE(other)) jpayne@69: */ jpayne@69: } jpayne@69: jpayne@69: /* "array.pxd":170 jpayne@69: * if self.ob_descr.typecode != other.ob_descr.typecode: jpayne@69: * PyErr_BadArgument() jpayne@69: * return extend_buffer(self, other.data.as_chars, Py_SIZE(other)) # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * cdef inline void zero(array self) noexcept: jpayne@69: */ jpayne@69: __pyx_t_2 = __pyx_f_7cpython_5array_extend_buffer(__pyx_v_self, __pyx_v_other->data.as_chars, Py_SIZE(((PyObject *)__pyx_v_other))); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(2, 170, __pyx_L1_error) jpayne@69: __pyx_r = __pyx_t_2; jpayne@69: goto __pyx_L0; jpayne@69: jpayne@69: /* "array.pxd":166 jpayne@69: * return 0 jpayne@69: * jpayne@69: * cdef inline int extend(array self, array other) except -1: # <<<<<<<<<<<<<< jpayne@69: * """ extend array with data from another array; types must match. """ jpayne@69: * if self.ob_descr.typecode != other.ob_descr.typecode: jpayne@69: */ jpayne@69: jpayne@69: /* function exit code */ jpayne@69: __pyx_L1_error:; jpayne@69: __Pyx_AddTraceback("cpython.array.extend", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@69: __pyx_r = -1; jpayne@69: __pyx_L0:; jpayne@69: return __pyx_r; jpayne@69: } jpayne@69: jpayne@69: /* "array.pxd":172 jpayne@69: * return extend_buffer(self, other.data.as_chars, Py_SIZE(other)) jpayne@69: * jpayne@69: * cdef inline void zero(array self) noexcept: # <<<<<<<<<<<<<< jpayne@69: * """ set all elements of array to zero. """ jpayne@69: * memset(self.data.as_chars, 0, Py_SIZE(self) * self.ob_descr.itemsize) jpayne@69: */ jpayne@69: jpayne@69: static CYTHON_INLINE void __pyx_f_7cpython_5array_zero(arrayobject *__pyx_v_self) { jpayne@69: jpayne@69: /* "array.pxd":174 jpayne@69: * cdef inline void zero(array self) noexcept: jpayne@69: * """ set all elements of array to zero. """ jpayne@69: * memset(self.data.as_chars, 0, Py_SIZE(self) * self.ob_descr.itemsize) # <<<<<<<<<<<<<< jpayne@69: */ jpayne@69: (void)(memset(__pyx_v_self->data.as_chars, 0, (Py_SIZE(((PyObject *)__pyx_v_self)) * __pyx_v_self->ob_descr->itemsize))); jpayne@69: jpayne@69: /* "array.pxd":172 jpayne@69: * return extend_buffer(self, other.data.as_chars, Py_SIZE(other)) jpayne@69: * jpayne@69: * cdef inline void zero(array self) noexcept: # <<<<<<<<<<<<<< jpayne@69: * """ set all elements of array to zero. """ jpayne@69: * memset(self.data.as_chars, 0, Py_SIZE(self) * self.ob_descr.itemsize) jpayne@69: */ jpayne@69: jpayne@69: /* function exit code */ jpayne@69: } jpayne@69: jpayne@69: /* "(tree fragment)":1 jpayne@69: * def __reduce_cython__(self): # <<<<<<<<<<<<<< jpayne@69: * raise TypeError, "self.b,self.htsfile,self.index cannot be converted to a Python object for pickling" jpayne@69: * def __setstate_cython__(self, __pyx_state): jpayne@69: */ jpayne@69: jpayne@69: /* Python wrapper */ jpayne@69: static PyObject *__pyx_pw_5pysam_11libcsamfile_7Samfile_1__reduce_cython__(PyObject *__pyx_v_self, jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@69: #else jpayne@69: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@69: #endif jpayne@69: ); /*proto*/ jpayne@69: PyDoc_STRVAR(__pyx_doc_5pysam_11libcsamfile_7Samfile___reduce_cython__, "Samfile.__reduce_cython__(self)"); jpayne@69: static PyMethodDef __pyx_mdef_5pysam_11libcsamfile_7Samfile_1__reduce_cython__ = {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_11libcsamfile_7Samfile_1__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_11libcsamfile_7Samfile___reduce_cython__}; jpayne@69: static PyObject *__pyx_pw_5pysam_11libcsamfile_7Samfile_1__reduce_cython__(PyObject *__pyx_v_self, jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@69: #else jpayne@69: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@69: #endif jpayne@69: ) { jpayne@69: #if !CYTHON_METH_FASTCALL jpayne@69: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@69: #endif jpayne@69: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@69: PyObject *__pyx_r = 0; jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: __Pyx_RefNannySetupContext("__reduce_cython__ (wrapper)", 0); jpayne@69: #if !CYTHON_METH_FASTCALL jpayne@69: #if CYTHON_ASSUME_SAFE_MACROS jpayne@69: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@69: #else jpayne@69: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@69: #endif jpayne@69: #endif jpayne@69: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@69: if (unlikely(__pyx_nargs > 0)) { jpayne@69: __Pyx_RaiseArgtupleInvalid("__reduce_cython__", 1, 0, 0, __pyx_nargs); return NULL;} jpayne@69: if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "__reduce_cython__", 0))) return NULL; jpayne@69: __pyx_r = __pyx_pf_5pysam_11libcsamfile_7Samfile___reduce_cython__(((struct __pyx_obj_5pysam_11libcsamfile_Samfile *)__pyx_v_self)); jpayne@69: jpayne@69: /* function exit code */ jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return __pyx_r; jpayne@69: } jpayne@69: jpayne@69: static PyObject *__pyx_pf_5pysam_11libcsamfile_7Samfile___reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_11libcsamfile_Samfile *__pyx_v_self) { jpayne@69: PyObject *__pyx_r = NULL; jpayne@69: __Pyx_TraceDeclarations jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: int __pyx_lineno = 0; jpayne@69: const char *__pyx_filename = NULL; jpayne@69: int __pyx_clineno = 0; jpayne@69: __Pyx_TraceFrameInit(__pyx_codeobj_) jpayne@69: __Pyx_RefNannySetupContext("__reduce_cython__", 1); jpayne@69: __Pyx_TraceCall("__reduce_cython__", __pyx_f[0], 1, 0, __PYX_ERR(0, 1, __pyx_L1_error)); jpayne@69: jpayne@69: /* "(tree fragment)":2 jpayne@69: * def __reduce_cython__(self): jpayne@69: * raise TypeError, "self.b,self.htsfile,self.index cannot be converted to a Python object for pickling" # <<<<<<<<<<<<<< jpayne@69: * def __setstate_cython__(self, __pyx_state): jpayne@69: * raise TypeError, "self.b,self.htsfile,self.index cannot be converted to a Python object for pickling" jpayne@69: */ jpayne@69: __Pyx_Raise(__pyx_builtin_TypeError, __pyx_kp_s_self_b_self_htsfile_self_index_c, 0, 0); jpayne@69: __PYX_ERR(0, 2, __pyx_L1_error) jpayne@69: jpayne@69: /* "(tree fragment)":1 jpayne@69: * def __reduce_cython__(self): # <<<<<<<<<<<<<< jpayne@69: * raise TypeError, "self.b,self.htsfile,self.index cannot be converted to a Python object for pickling" jpayne@69: * def __setstate_cython__(self, __pyx_state): jpayne@69: */ jpayne@69: jpayne@69: /* function exit code */ jpayne@69: __pyx_L1_error:; jpayne@69: __Pyx_AddTraceback("pysam.libcsamfile.Samfile.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@69: __pyx_r = NULL; jpayne@69: __Pyx_XGIVEREF(__pyx_r); jpayne@69: __Pyx_TraceReturn(__pyx_r, 0); jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return __pyx_r; jpayne@69: } jpayne@69: jpayne@69: /* "(tree fragment)":3 jpayne@69: * def __reduce_cython__(self): jpayne@69: * raise TypeError, "self.b,self.htsfile,self.index cannot be converted to a Python object for pickling" jpayne@69: * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<< jpayne@69: * raise TypeError, "self.b,self.htsfile,self.index cannot be converted to a Python object for pickling" jpayne@69: */ jpayne@69: jpayne@69: /* Python wrapper */ jpayne@69: static PyObject *__pyx_pw_5pysam_11libcsamfile_7Samfile_3__setstate_cython__(PyObject *__pyx_v_self, jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@69: #else jpayne@69: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@69: #endif jpayne@69: ); /*proto*/ jpayne@69: PyDoc_STRVAR(__pyx_doc_5pysam_11libcsamfile_7Samfile_2__setstate_cython__, "Samfile.__setstate_cython__(self, __pyx_state)"); jpayne@69: static PyMethodDef __pyx_mdef_5pysam_11libcsamfile_7Samfile_3__setstate_cython__ = {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_11libcsamfile_7Samfile_3__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_11libcsamfile_7Samfile_2__setstate_cython__}; jpayne@69: static PyObject *__pyx_pw_5pysam_11libcsamfile_7Samfile_3__setstate_cython__(PyObject *__pyx_v_self, jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@69: #else jpayne@69: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@69: #endif jpayne@69: ) { jpayne@69: CYTHON_UNUSED PyObject *__pyx_v___pyx_state = 0; jpayne@69: #if !CYTHON_METH_FASTCALL jpayne@69: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@69: #endif jpayne@69: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@69: PyObject* values[1] = {0}; jpayne@69: int __pyx_lineno = 0; jpayne@69: const char *__pyx_filename = NULL; jpayne@69: int __pyx_clineno = 0; jpayne@69: PyObject *__pyx_r = 0; jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: __Pyx_RefNannySetupContext("__setstate_cython__ (wrapper)", 0); jpayne@69: #if !CYTHON_METH_FASTCALL jpayne@69: #if CYTHON_ASSUME_SAFE_MACROS jpayne@69: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@69: #else jpayne@69: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@69: #endif jpayne@69: #endif jpayne@69: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@69: { jpayne@69: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_pyx_state,0}; jpayne@69: if (__pyx_kwds) { jpayne@69: Py_ssize_t kw_args; jpayne@69: switch (__pyx_nargs) { jpayne@69: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@69: CYTHON_FALLTHROUGH; jpayne@69: case 0: break; jpayne@69: default: goto __pyx_L5_argtuple_error; jpayne@69: } jpayne@69: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@69: switch (__pyx_nargs) { jpayne@69: case 0: jpayne@69: if (likely((values[0] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_pyx_state)) != 0)) { jpayne@69: (void)__Pyx_Arg_NewRef_FASTCALL(values[0]); jpayne@69: kw_args--; jpayne@69: } jpayne@69: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 3, __pyx_L3_error) jpayne@69: else goto __pyx_L5_argtuple_error; jpayne@69: } jpayne@69: if (unlikely(kw_args > 0)) { jpayne@69: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@69: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "__setstate_cython__") < 0)) __PYX_ERR(0, 3, __pyx_L3_error) jpayne@69: } jpayne@69: } else if (unlikely(__pyx_nargs != 1)) { jpayne@69: goto __pyx_L5_argtuple_error; jpayne@69: } else { jpayne@69: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@69: } jpayne@69: __pyx_v___pyx_state = values[0]; jpayne@69: } jpayne@69: goto __pyx_L6_skip; jpayne@69: __pyx_L5_argtuple_error:; jpayne@69: __Pyx_RaiseArgtupleInvalid("__setstate_cython__", 1, 1, 1, __pyx_nargs); __PYX_ERR(0, 3, __pyx_L3_error) jpayne@69: __pyx_L6_skip:; jpayne@69: goto __pyx_L4_argument_unpacking_done; jpayne@69: __pyx_L3_error:; jpayne@69: { jpayne@69: Py_ssize_t __pyx_temp; jpayne@69: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@69: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@69: } jpayne@69: } jpayne@69: __Pyx_AddTraceback("pysam.libcsamfile.Samfile.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return NULL; jpayne@69: __pyx_L4_argument_unpacking_done:; jpayne@69: __pyx_r = __pyx_pf_5pysam_11libcsamfile_7Samfile_2__setstate_cython__(((struct __pyx_obj_5pysam_11libcsamfile_Samfile *)__pyx_v_self), __pyx_v___pyx_state); jpayne@69: jpayne@69: /* function exit code */ jpayne@69: { jpayne@69: Py_ssize_t __pyx_temp; jpayne@69: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@69: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@69: } jpayne@69: } jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return __pyx_r; jpayne@69: } jpayne@69: jpayne@69: static PyObject *__pyx_pf_5pysam_11libcsamfile_7Samfile_2__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_11libcsamfile_Samfile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state) { jpayne@69: PyObject *__pyx_r = NULL; jpayne@69: __Pyx_TraceDeclarations jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: int __pyx_lineno = 0; jpayne@69: const char *__pyx_filename = NULL; jpayne@69: int __pyx_clineno = 0; jpayne@69: __Pyx_TraceFrameInit(__pyx_codeobj__2) jpayne@69: __Pyx_RefNannySetupContext("__setstate_cython__", 1); jpayne@69: __Pyx_TraceCall("__setstate_cython__", __pyx_f[0], 3, 0, __PYX_ERR(0, 3, __pyx_L1_error)); jpayne@69: jpayne@69: /* "(tree fragment)":4 jpayne@69: * raise TypeError, "self.b,self.htsfile,self.index cannot be converted to a Python object for pickling" jpayne@69: * def __setstate_cython__(self, __pyx_state): jpayne@69: * raise TypeError, "self.b,self.htsfile,self.index cannot be converted to a Python object for pickling" # <<<<<<<<<<<<<< jpayne@69: */ jpayne@69: __Pyx_Raise(__pyx_builtin_TypeError, __pyx_kp_s_self_b_self_htsfile_self_index_c, 0, 0); jpayne@69: __PYX_ERR(0, 4, __pyx_L1_error) jpayne@69: jpayne@69: /* "(tree fragment)":3 jpayne@69: * def __reduce_cython__(self): jpayne@69: * raise TypeError, "self.b,self.htsfile,self.index cannot be converted to a Python object for pickling" jpayne@69: * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<< jpayne@69: * raise TypeError, "self.b,self.htsfile,self.index cannot be converted to a Python object for pickling" jpayne@69: */ jpayne@69: jpayne@69: /* function exit code */ jpayne@69: __pyx_L1_error:; jpayne@69: __Pyx_AddTraceback("pysam.libcsamfile.Samfile.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@69: __pyx_r = NULL; jpayne@69: __Pyx_XGIVEREF(__pyx_r); jpayne@69: __Pyx_TraceReturn(__pyx_r, 0); jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return __pyx_r; jpayne@69: } jpayne@69: jpayne@69: /* "(tree fragment)":1 jpayne@69: * def __reduce_cython__(self): # <<<<<<<<<<<<<< jpayne@69: * raise TypeError, "self._delegate cannot be converted to a Python object for pickling" jpayne@69: * def __setstate_cython__(self, __pyx_state): jpayne@69: */ jpayne@69: jpayne@69: /* Python wrapper */ jpayne@69: static PyObject *__pyx_pw_5pysam_11libcsamfile_11AlignedRead_1__reduce_cython__(PyObject *__pyx_v_self, jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@69: #else jpayne@69: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@69: #endif jpayne@69: ); /*proto*/ jpayne@69: PyDoc_STRVAR(__pyx_doc_5pysam_11libcsamfile_11AlignedRead___reduce_cython__, "AlignedRead.__reduce_cython__(self)"); jpayne@69: static PyMethodDef __pyx_mdef_5pysam_11libcsamfile_11AlignedRead_1__reduce_cython__ = {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_11libcsamfile_11AlignedRead_1__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_11libcsamfile_11AlignedRead___reduce_cython__}; jpayne@69: static PyObject *__pyx_pw_5pysam_11libcsamfile_11AlignedRead_1__reduce_cython__(PyObject *__pyx_v_self, jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@69: #else jpayne@69: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@69: #endif jpayne@69: ) { jpayne@69: #if !CYTHON_METH_FASTCALL jpayne@69: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@69: #endif jpayne@69: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@69: PyObject *__pyx_r = 0; jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: __Pyx_RefNannySetupContext("__reduce_cython__ (wrapper)", 0); jpayne@69: #if !CYTHON_METH_FASTCALL jpayne@69: #if CYTHON_ASSUME_SAFE_MACROS jpayne@69: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@69: #else jpayne@69: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@69: #endif jpayne@69: #endif jpayne@69: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@69: if (unlikely(__pyx_nargs > 0)) { jpayne@69: __Pyx_RaiseArgtupleInvalid("__reduce_cython__", 1, 0, 0, __pyx_nargs); return NULL;} jpayne@69: if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "__reduce_cython__", 0))) return NULL; jpayne@69: __pyx_r = __pyx_pf_5pysam_11libcsamfile_11AlignedRead___reduce_cython__(((struct __pyx_obj_5pysam_11libcsamfile_AlignedRead *)__pyx_v_self)); jpayne@69: jpayne@69: /* function exit code */ jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return __pyx_r; jpayne@69: } jpayne@69: jpayne@69: static PyObject *__pyx_pf_5pysam_11libcsamfile_11AlignedRead___reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_11libcsamfile_AlignedRead *__pyx_v_self) { jpayne@69: PyObject *__pyx_r = NULL; jpayne@69: __Pyx_TraceDeclarations jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: int __pyx_lineno = 0; jpayne@69: const char *__pyx_filename = NULL; jpayne@69: int __pyx_clineno = 0; jpayne@69: __Pyx_TraceFrameInit(__pyx_codeobj__3) jpayne@69: __Pyx_RefNannySetupContext("__reduce_cython__", 1); jpayne@69: __Pyx_TraceCall("__reduce_cython__", __pyx_f[0], 1, 0, __PYX_ERR(0, 1, __pyx_L1_error)); jpayne@69: jpayne@69: /* "(tree fragment)":2 jpayne@69: * def __reduce_cython__(self): jpayne@69: * raise TypeError, "self._delegate cannot be converted to a Python object for pickling" # <<<<<<<<<<<<<< jpayne@69: * def __setstate_cython__(self, __pyx_state): jpayne@69: * raise TypeError, "self._delegate cannot be converted to a Python object for pickling" jpayne@69: */ jpayne@69: __Pyx_Raise(__pyx_builtin_TypeError, __pyx_kp_s_self__delegate_cannot_be_convert, 0, 0); jpayne@69: __PYX_ERR(0, 2, __pyx_L1_error) jpayne@69: jpayne@69: /* "(tree fragment)":1 jpayne@69: * def __reduce_cython__(self): # <<<<<<<<<<<<<< jpayne@69: * raise TypeError, "self._delegate cannot be converted to a Python object for pickling" jpayne@69: * def __setstate_cython__(self, __pyx_state): jpayne@69: */ jpayne@69: jpayne@69: /* function exit code */ jpayne@69: __pyx_L1_error:; jpayne@69: __Pyx_AddTraceback("pysam.libcsamfile.AlignedRead.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@69: __pyx_r = NULL; jpayne@69: __Pyx_XGIVEREF(__pyx_r); jpayne@69: __Pyx_TraceReturn(__pyx_r, 0); jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return __pyx_r; jpayne@69: } jpayne@69: jpayne@69: /* "(tree fragment)":3 jpayne@69: * def __reduce_cython__(self): jpayne@69: * raise TypeError, "self._delegate cannot be converted to a Python object for pickling" jpayne@69: * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<< jpayne@69: * raise TypeError, "self._delegate cannot be converted to a Python object for pickling" jpayne@69: */ jpayne@69: jpayne@69: /* Python wrapper */ jpayne@69: static PyObject *__pyx_pw_5pysam_11libcsamfile_11AlignedRead_3__setstate_cython__(PyObject *__pyx_v_self, jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@69: #else jpayne@69: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@69: #endif jpayne@69: ); /*proto*/ jpayne@69: PyDoc_STRVAR(__pyx_doc_5pysam_11libcsamfile_11AlignedRead_2__setstate_cython__, "AlignedRead.__setstate_cython__(self, __pyx_state)"); jpayne@69: static PyMethodDef __pyx_mdef_5pysam_11libcsamfile_11AlignedRead_3__setstate_cython__ = {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_11libcsamfile_11AlignedRead_3__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_11libcsamfile_11AlignedRead_2__setstate_cython__}; jpayne@69: static PyObject *__pyx_pw_5pysam_11libcsamfile_11AlignedRead_3__setstate_cython__(PyObject *__pyx_v_self, jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@69: #else jpayne@69: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@69: #endif jpayne@69: ) { jpayne@69: CYTHON_UNUSED PyObject *__pyx_v___pyx_state = 0; jpayne@69: #if !CYTHON_METH_FASTCALL jpayne@69: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@69: #endif jpayne@69: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@69: PyObject* values[1] = {0}; jpayne@69: int __pyx_lineno = 0; jpayne@69: const char *__pyx_filename = NULL; jpayne@69: int __pyx_clineno = 0; jpayne@69: PyObject *__pyx_r = 0; jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: __Pyx_RefNannySetupContext("__setstate_cython__ (wrapper)", 0); jpayne@69: #if !CYTHON_METH_FASTCALL jpayne@69: #if CYTHON_ASSUME_SAFE_MACROS jpayne@69: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@69: #else jpayne@69: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@69: #endif jpayne@69: #endif jpayne@69: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@69: { jpayne@69: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_pyx_state,0}; jpayne@69: if (__pyx_kwds) { jpayne@69: Py_ssize_t kw_args; jpayne@69: switch (__pyx_nargs) { jpayne@69: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@69: CYTHON_FALLTHROUGH; jpayne@69: case 0: break; jpayne@69: default: goto __pyx_L5_argtuple_error; jpayne@69: } jpayne@69: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@69: switch (__pyx_nargs) { jpayne@69: case 0: jpayne@69: if (likely((values[0] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_pyx_state)) != 0)) { jpayne@69: (void)__Pyx_Arg_NewRef_FASTCALL(values[0]); jpayne@69: kw_args--; jpayne@69: } jpayne@69: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 3, __pyx_L3_error) jpayne@69: else goto __pyx_L5_argtuple_error; jpayne@69: } jpayne@69: if (unlikely(kw_args > 0)) { jpayne@69: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@69: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "__setstate_cython__") < 0)) __PYX_ERR(0, 3, __pyx_L3_error) jpayne@69: } jpayne@69: } else if (unlikely(__pyx_nargs != 1)) { jpayne@69: goto __pyx_L5_argtuple_error; jpayne@69: } else { jpayne@69: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@69: } jpayne@69: __pyx_v___pyx_state = values[0]; jpayne@69: } jpayne@69: goto __pyx_L6_skip; jpayne@69: __pyx_L5_argtuple_error:; jpayne@69: __Pyx_RaiseArgtupleInvalid("__setstate_cython__", 1, 1, 1, __pyx_nargs); __PYX_ERR(0, 3, __pyx_L3_error) jpayne@69: __pyx_L6_skip:; jpayne@69: goto __pyx_L4_argument_unpacking_done; jpayne@69: __pyx_L3_error:; jpayne@69: { jpayne@69: Py_ssize_t __pyx_temp; jpayne@69: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@69: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@69: } jpayne@69: } jpayne@69: __Pyx_AddTraceback("pysam.libcsamfile.AlignedRead.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return NULL; jpayne@69: __pyx_L4_argument_unpacking_done:; jpayne@69: __pyx_r = __pyx_pf_5pysam_11libcsamfile_11AlignedRead_2__setstate_cython__(((struct __pyx_obj_5pysam_11libcsamfile_AlignedRead *)__pyx_v_self), __pyx_v___pyx_state); jpayne@69: jpayne@69: /* function exit code */ jpayne@69: { jpayne@69: Py_ssize_t __pyx_temp; jpayne@69: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@69: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@69: } jpayne@69: } jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return __pyx_r; jpayne@69: } jpayne@69: jpayne@69: static PyObject *__pyx_pf_5pysam_11libcsamfile_11AlignedRead_2__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_11libcsamfile_AlignedRead *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state) { jpayne@69: PyObject *__pyx_r = NULL; jpayne@69: __Pyx_TraceDeclarations jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: int __pyx_lineno = 0; jpayne@69: const char *__pyx_filename = NULL; jpayne@69: int __pyx_clineno = 0; jpayne@69: __Pyx_TraceFrameInit(__pyx_codeobj__4) jpayne@69: __Pyx_RefNannySetupContext("__setstate_cython__", 1); jpayne@69: __Pyx_TraceCall("__setstate_cython__", __pyx_f[0], 3, 0, __PYX_ERR(0, 3, __pyx_L1_error)); jpayne@69: jpayne@69: /* "(tree fragment)":4 jpayne@69: * raise TypeError, "self._delegate cannot be converted to a Python object for pickling" jpayne@69: * def __setstate_cython__(self, __pyx_state): jpayne@69: * raise TypeError, "self._delegate cannot be converted to a Python object for pickling" # <<<<<<<<<<<<<< jpayne@69: */ jpayne@69: __Pyx_Raise(__pyx_builtin_TypeError, __pyx_kp_s_self__delegate_cannot_be_convert, 0, 0); jpayne@69: __PYX_ERR(0, 4, __pyx_L1_error) jpayne@69: jpayne@69: /* "(tree fragment)":3 jpayne@69: * def __reduce_cython__(self): jpayne@69: * raise TypeError, "self._delegate cannot be converted to a Python object for pickling" jpayne@69: * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<< jpayne@69: * raise TypeError, "self._delegate cannot be converted to a Python object for pickling" jpayne@69: */ jpayne@69: jpayne@69: /* function exit code */ jpayne@69: __pyx_L1_error:; jpayne@69: __Pyx_AddTraceback("pysam.libcsamfile.AlignedRead.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@69: __pyx_r = NULL; jpayne@69: __Pyx_XGIVEREF(__pyx_r); jpayne@69: __Pyx_TraceReturn(__pyx_r, 0); jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return __pyx_r; jpayne@69: } jpayne@69: static struct __pyx_vtabstruct_5pysam_11libcsamfile_AlignedRead __pyx_vtable_5pysam_11libcsamfile_AlignedRead; jpayne@69: jpayne@69: static PyObject *__pyx_tp_new_5pysam_11libcsamfile_AlignedRead(PyTypeObject *t, PyObject *a, PyObject *k) { jpayne@69: struct __pyx_obj_5pysam_11libcsamfile_AlignedRead *p; jpayne@69: PyObject *o = __Pyx_PyType_GetSlot(__pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment, tp_new, newfunc)(t, a, k); jpayne@69: if (unlikely(!o)) return 0; jpayne@69: p = ((struct __pyx_obj_5pysam_11libcsamfile_AlignedRead *)o); jpayne@69: p->__pyx_base.__pyx_vtab = (struct __pyx_vtabstruct_5pysam_18libcalignedsegment_AlignedSegment*)__pyx_vtabptr_5pysam_11libcsamfile_AlignedRead; jpayne@69: return o; jpayne@69: } jpayne@69: jpayne@69: static int __pyx_tp_traverse_5pysam_11libcsamfile_AlignedRead(PyObject *o, visitproc v, void *a) { jpayne@69: int e; jpayne@69: e = ((likely(__pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment)) ? ((__pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment->tp_traverse) ? __pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment->tp_traverse(o, v, a) : 0) : __Pyx_call_next_tp_traverse(o, v, a, __pyx_tp_traverse_5pysam_11libcsamfile_AlignedRead)); if (e) return e; jpayne@69: return 0; jpayne@69: } jpayne@69: jpayne@69: static int __pyx_tp_clear_5pysam_11libcsamfile_AlignedRead(PyObject *o) { jpayne@69: if (likely(__pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment)) { if (__pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment->tp_clear) __pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment->tp_clear(o); } else __Pyx_call_next_tp_clear(o, __pyx_tp_clear_5pysam_11libcsamfile_AlignedRead); jpayne@69: return 0; jpayne@69: } jpayne@69: jpayne@69: static PyMethodDef __pyx_methods_5pysam_11libcsamfile_AlignedRead[] = { jpayne@69: {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_11libcsamfile_11AlignedRead_1__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_11libcsamfile_11AlignedRead___reduce_cython__}, jpayne@69: {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_11libcsamfile_11AlignedRead_3__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_11libcsamfile_11AlignedRead_2__setstate_cython__}, jpayne@69: {0, 0, 0, 0} jpayne@69: }; jpayne@69: #if CYTHON_USE_TYPE_SPECS jpayne@69: static PyType_Slot __pyx_type_5pysam_11libcsamfile_AlignedRead_slots[] = { jpayne@69: {Py_tp_doc, (void *)PyDoc_STR("Deprecated alternative for :class:`~pysam.AlignedSegment`\n\n Added for backwards compatibility with pysam <= 0.8.0\n ")}, jpayne@69: {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_11libcsamfile_AlignedRead}, jpayne@69: {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_11libcsamfile_AlignedRead}, jpayne@69: {Py_tp_methods, (void *)__pyx_methods_5pysam_11libcsamfile_AlignedRead}, jpayne@69: {Py_tp_new, (void *)__pyx_tp_new_5pysam_11libcsamfile_AlignedRead}, jpayne@69: {0, 0}, jpayne@69: }; jpayne@69: static PyType_Spec __pyx_type_5pysam_11libcsamfile_AlignedRead_spec = { jpayne@69: "pysam.libcsamfile.AlignedRead", jpayne@69: sizeof(struct __pyx_obj_5pysam_11libcsamfile_AlignedRead), jpayne@69: 0, jpayne@69: Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, jpayne@69: __pyx_type_5pysam_11libcsamfile_AlignedRead_slots, jpayne@69: }; jpayne@69: #else jpayne@69: jpayne@69: static PyTypeObject __pyx_type_5pysam_11libcsamfile_AlignedRead = { jpayne@69: PyVarObject_HEAD_INIT(0, 0) jpayne@69: "pysam.libcsamfile.""AlignedRead", /*tp_name*/ jpayne@69: sizeof(struct __pyx_obj_5pysam_11libcsamfile_AlignedRead), /*tp_basicsize*/ jpayne@69: 0, /*tp_itemsize*/ jpayne@69: 0, /*tp_dealloc*/ jpayne@69: #if PY_VERSION_HEX < 0x030800b4 jpayne@69: 0, /*tp_print*/ jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX >= 0x030800b4 jpayne@69: 0, /*tp_vectorcall_offset*/ jpayne@69: #endif jpayne@69: 0, /*tp_getattr*/ jpayne@69: 0, /*tp_setattr*/ jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: 0, /*tp_compare*/ jpayne@69: #endif jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: 0, /*tp_as_async*/ jpayne@69: #endif jpayne@69: 0, /*tp_repr*/ jpayne@69: 0, /*tp_as_number*/ jpayne@69: 0, /*tp_as_sequence*/ jpayne@69: 0, /*tp_as_mapping*/ jpayne@69: 0, /*tp_hash*/ jpayne@69: 0, /*tp_call*/ jpayne@69: 0, /*tp_str*/ jpayne@69: 0, /*tp_getattro*/ jpayne@69: 0, /*tp_setattro*/ jpayne@69: 0, /*tp_as_buffer*/ jpayne@69: Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ jpayne@69: PyDoc_STR("Deprecated alternative for :class:`~pysam.AlignedSegment`\n\n Added for backwards compatibility with pysam <= 0.8.0\n "), /*tp_doc*/ jpayne@69: __pyx_tp_traverse_5pysam_11libcsamfile_AlignedRead, /*tp_traverse*/ jpayne@69: __pyx_tp_clear_5pysam_11libcsamfile_AlignedRead, /*tp_clear*/ jpayne@69: 0, /*tp_richcompare*/ jpayne@69: 0, /*tp_weaklistoffset*/ jpayne@69: 0, /*tp_iter*/ jpayne@69: 0, /*tp_iternext*/ jpayne@69: __pyx_methods_5pysam_11libcsamfile_AlignedRead, /*tp_methods*/ jpayne@69: 0, /*tp_members*/ jpayne@69: 0, /*tp_getset*/ jpayne@69: 0, /*tp_base*/ jpayne@69: 0, /*tp_dict*/ jpayne@69: 0, /*tp_descr_get*/ jpayne@69: 0, /*tp_descr_set*/ jpayne@69: #if !CYTHON_USE_TYPE_SPECS jpayne@69: 0, /*tp_dictoffset*/ jpayne@69: #endif jpayne@69: 0, /*tp_init*/ jpayne@69: 0, /*tp_alloc*/ jpayne@69: __pyx_tp_new_5pysam_11libcsamfile_AlignedRead, /*tp_new*/ jpayne@69: 0, /*tp_free*/ jpayne@69: 0, /*tp_is_gc*/ jpayne@69: 0, /*tp_bases*/ jpayne@69: 0, /*tp_mro*/ jpayne@69: 0, /*tp_cache*/ jpayne@69: 0, /*tp_subclasses*/ jpayne@69: 0, /*tp_weaklist*/ jpayne@69: 0, /*tp_del*/ jpayne@69: 0, /*tp_version_tag*/ jpayne@69: #if PY_VERSION_HEX >= 0x030400a1 jpayne@69: #if CYTHON_USE_TP_FINALIZE jpayne@69: 0, /*tp_finalize*/ jpayne@69: #else jpayne@69: NULL, /*tp_finalize*/ jpayne@69: #endif jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) jpayne@69: 0, /*tp_vectorcall*/ jpayne@69: #endif jpayne@69: #if __PYX_NEED_TP_PRINT_SLOT == 1 jpayne@69: 0, /*tp_print*/ jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX >= 0x030C0000 jpayne@69: 0, /*tp_watched*/ jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX >= 0x030d00A4 jpayne@69: 0, /*tp_versions_used*/ jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 jpayne@69: 0, /*tp_pypy_flags*/ jpayne@69: #endif jpayne@69: }; jpayne@69: #endif jpayne@69: static struct __pyx_vtabstruct_5pysam_11libcsamfile_Samfile __pyx_vtable_5pysam_11libcsamfile_Samfile; jpayne@69: jpayne@69: static PyObject *__pyx_tp_new_5pysam_11libcsamfile_Samfile(PyTypeObject *t, PyObject *a, PyObject *k) { jpayne@69: struct __pyx_obj_5pysam_11libcsamfile_Samfile *p; jpayne@69: PyObject *o = __Pyx_PyType_GetSlot(__pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile, tp_new, newfunc)(t, a, k); jpayne@69: if (unlikely(!o)) return 0; jpayne@69: p = ((struct __pyx_obj_5pysam_11libcsamfile_Samfile *)o); jpayne@69: p->__pyx_base.__pyx_base.__pyx_vtab = (struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile*)__pyx_vtabptr_5pysam_11libcsamfile_Samfile; jpayne@69: return o; jpayne@69: } jpayne@69: jpayne@69: static int __pyx_tp_traverse_5pysam_11libcsamfile_Samfile(PyObject *o, visitproc v, void *a) { jpayne@69: int e; jpayne@69: e = ((likely(__pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile)) ? ((__pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile->tp_traverse) ? __pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile->tp_traverse(o, v, a) : 0) : __Pyx_call_next_tp_traverse(o, v, a, __pyx_tp_traverse_5pysam_11libcsamfile_Samfile)); if (e) return e; jpayne@69: return 0; jpayne@69: } jpayne@69: jpayne@69: static int __pyx_tp_clear_5pysam_11libcsamfile_Samfile(PyObject *o) { jpayne@69: if (likely(__pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile)) { if (__pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile->tp_clear) __pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile->tp_clear(o); } else __Pyx_call_next_tp_clear(o, __pyx_tp_clear_5pysam_11libcsamfile_Samfile); jpayne@69: return 0; jpayne@69: } jpayne@69: jpayne@69: static PyMethodDef __pyx_methods_5pysam_11libcsamfile_Samfile[] = { jpayne@69: {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_11libcsamfile_7Samfile_1__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_11libcsamfile_7Samfile___reduce_cython__}, jpayne@69: {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_11libcsamfile_7Samfile_3__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_11libcsamfile_7Samfile_2__setstate_cython__}, jpayne@69: {0, 0, 0, 0} jpayne@69: }; jpayne@69: #if CYTHON_USE_TYPE_SPECS jpayne@69: static PyType_Slot __pyx_type_5pysam_11libcsamfile_Samfile_slots[] = { jpayne@69: {Py_tp_doc, (void *)PyDoc_STR("Deprecated alternative for :class:`~pysam.AlignmentFile`\n\n Added for backwards compatibility with pysam <= 0.8.0\n ")}, jpayne@69: {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_11libcsamfile_Samfile}, jpayne@69: {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_11libcsamfile_Samfile}, jpayne@69: {Py_tp_methods, (void *)__pyx_methods_5pysam_11libcsamfile_Samfile}, jpayne@69: {Py_tp_new, (void *)__pyx_tp_new_5pysam_11libcsamfile_Samfile}, jpayne@69: {0, 0}, jpayne@69: }; jpayne@69: static PyType_Spec __pyx_type_5pysam_11libcsamfile_Samfile_spec = { jpayne@69: "pysam.libcsamfile.Samfile", jpayne@69: sizeof(struct __pyx_obj_5pysam_11libcsamfile_Samfile), jpayne@69: 0, jpayne@69: Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, jpayne@69: __pyx_type_5pysam_11libcsamfile_Samfile_slots, jpayne@69: }; jpayne@69: #else jpayne@69: jpayne@69: static PyTypeObject __pyx_type_5pysam_11libcsamfile_Samfile = { jpayne@69: PyVarObject_HEAD_INIT(0, 0) jpayne@69: "pysam.libcsamfile.""Samfile", /*tp_name*/ jpayne@69: sizeof(struct __pyx_obj_5pysam_11libcsamfile_Samfile), /*tp_basicsize*/ jpayne@69: 0, /*tp_itemsize*/ jpayne@69: 0, /*tp_dealloc*/ jpayne@69: #if PY_VERSION_HEX < 0x030800b4 jpayne@69: 0, /*tp_print*/ jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX >= 0x030800b4 jpayne@69: 0, /*tp_vectorcall_offset*/ jpayne@69: #endif jpayne@69: 0, /*tp_getattr*/ jpayne@69: 0, /*tp_setattr*/ jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: 0, /*tp_compare*/ jpayne@69: #endif jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: 0, /*tp_as_async*/ jpayne@69: #endif jpayne@69: 0, /*tp_repr*/ jpayne@69: 0, /*tp_as_number*/ jpayne@69: 0, /*tp_as_sequence*/ jpayne@69: 0, /*tp_as_mapping*/ jpayne@69: 0, /*tp_hash*/ jpayne@69: 0, /*tp_call*/ jpayne@69: 0, /*tp_str*/ jpayne@69: 0, /*tp_getattro*/ jpayne@69: 0, /*tp_setattro*/ jpayne@69: 0, /*tp_as_buffer*/ jpayne@69: Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ jpayne@69: PyDoc_STR("Deprecated alternative for :class:`~pysam.AlignmentFile`\n\n Added for backwards compatibility with pysam <= 0.8.0\n "), /*tp_doc*/ jpayne@69: __pyx_tp_traverse_5pysam_11libcsamfile_Samfile, /*tp_traverse*/ jpayne@69: __pyx_tp_clear_5pysam_11libcsamfile_Samfile, /*tp_clear*/ jpayne@69: 0, /*tp_richcompare*/ jpayne@69: 0, /*tp_weaklistoffset*/ jpayne@69: 0, /*tp_iter*/ jpayne@69: 0, /*tp_iternext*/ jpayne@69: __pyx_methods_5pysam_11libcsamfile_Samfile, /*tp_methods*/ jpayne@69: 0, /*tp_members*/ jpayne@69: 0, /*tp_getset*/ jpayne@69: 0, /*tp_base*/ jpayne@69: 0, /*tp_dict*/ jpayne@69: 0, /*tp_descr_get*/ jpayne@69: 0, /*tp_descr_set*/ jpayne@69: #if !CYTHON_USE_TYPE_SPECS jpayne@69: 0, /*tp_dictoffset*/ jpayne@69: #endif jpayne@69: 0, /*tp_init*/ jpayne@69: 0, /*tp_alloc*/ jpayne@69: __pyx_tp_new_5pysam_11libcsamfile_Samfile, /*tp_new*/ jpayne@69: 0, /*tp_free*/ jpayne@69: 0, /*tp_is_gc*/ jpayne@69: 0, /*tp_bases*/ jpayne@69: 0, /*tp_mro*/ jpayne@69: 0, /*tp_cache*/ jpayne@69: 0, /*tp_subclasses*/ jpayne@69: 0, /*tp_weaklist*/ jpayne@69: 0, /*tp_del*/ jpayne@69: 0, /*tp_version_tag*/ jpayne@69: #if PY_VERSION_HEX >= 0x030400a1 jpayne@69: #if CYTHON_USE_TP_FINALIZE jpayne@69: 0, /*tp_finalize*/ jpayne@69: #else jpayne@69: NULL, /*tp_finalize*/ jpayne@69: #endif jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) jpayne@69: 0, /*tp_vectorcall*/ jpayne@69: #endif jpayne@69: #if __PYX_NEED_TP_PRINT_SLOT == 1 jpayne@69: 0, /*tp_print*/ jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX >= 0x030C0000 jpayne@69: 0, /*tp_watched*/ jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX >= 0x030d00A4 jpayne@69: 0, /*tp_versions_used*/ jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 jpayne@69: 0, /*tp_pypy_flags*/ jpayne@69: #endif jpayne@69: }; jpayne@69: #endif jpayne@69: jpayne@69: static PyMethodDef __pyx_methods[] = { jpayne@69: {0, 0, 0, 0} jpayne@69: }; jpayne@69: #ifndef CYTHON_SMALL_CODE jpayne@69: #if defined(__clang__) jpayne@69: #define CYTHON_SMALL_CODE jpayne@69: #elif defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 3)) jpayne@69: #define CYTHON_SMALL_CODE __attribute__((cold)) jpayne@69: #else jpayne@69: #define CYTHON_SMALL_CODE jpayne@69: #endif jpayne@69: #endif jpayne@69: /* #### Code section: pystring_table ### */ jpayne@69: jpayne@69: static int __Pyx_CreateStringTabAndInitStrings(void) { jpayne@69: __Pyx_StringTabEntry __pyx_string_tab[] = { jpayne@69: {&__pyx_n_s_AlignedRead, __pyx_k_AlignedRead, sizeof(__pyx_k_AlignedRead), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_u_AlignedRead, __pyx_k_AlignedRead, sizeof(__pyx_k_AlignedRead), 0, 1, 0, 1}, jpayne@69: {&__pyx_n_s_AlignedRead___reduce_cython, __pyx_k_AlignedRead___reduce_cython, sizeof(__pyx_k_AlignedRead___reduce_cython), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_AlignedRead___setstate_cython, __pyx_k_AlignedRead___setstate_cython, sizeof(__pyx_k_AlignedRead___setstate_cython), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_MemoryError, __pyx_k_MemoryError, sizeof(__pyx_k_MemoryError), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_Samfile, __pyx_k_Samfile, sizeof(__pyx_k_Samfile), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_u_Samfile, __pyx_k_Samfile, sizeof(__pyx_k_Samfile), 0, 1, 0, 1}, jpayne@69: {&__pyx_n_s_Samfile___reduce_cython, __pyx_k_Samfile___reduce_cython, sizeof(__pyx_k_Samfile___reduce_cython), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_Samfile___setstate_cython, __pyx_k_Samfile___setstate_cython, sizeof(__pyx_k_Samfile___setstate_cython), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_TypeError, __pyx_k_TypeError, sizeof(__pyx_k_TypeError), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s__5, __pyx_k__5, sizeof(__pyx_k__5), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s__8, __pyx_k__8, sizeof(__pyx_k__8), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_all, __pyx_k_all, sizeof(__pyx_k_all), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_asyncio_coroutines, __pyx_k_asyncio_coroutines, sizeof(__pyx_k_asyncio_coroutines), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_cline_in_traceback, __pyx_k_cline_in_traceback, sizeof(__pyx_k_cline_in_traceback), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_collections, __pyx_k_collections, sizeof(__pyx_k_collections), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_ctypes, __pyx_k_ctypes, sizeof(__pyx_k_ctypes), 0, 0, 1, 1}, jpayne@69: {&__pyx_kp_u_disable, __pyx_k_disable, sizeof(__pyx_k_disable), 0, 1, 0, 0}, jpayne@69: {&__pyx_kp_u_enable, __pyx_k_enable, sizeof(__pyx_k_enable), 0, 1, 0, 0}, jpayne@69: {&__pyx_kp_u_gc, __pyx_k_gc, sizeof(__pyx_k_gc), 0, 1, 0, 0}, jpayne@69: {&__pyx_n_s_getstate, __pyx_k_getstate, sizeof(__pyx_k_getstate), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_import, __pyx_k_import, sizeof(__pyx_k_import), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_initializing, __pyx_k_initializing, sizeof(__pyx_k_initializing), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_is_coroutine, __pyx_k_is_coroutine, sizeof(__pyx_k_is_coroutine), 0, 0, 1, 1}, jpayne@69: {&__pyx_kp_u_isenabled, __pyx_k_isenabled, sizeof(__pyx_k_isenabled), 0, 1, 0, 0}, jpayne@69: {&__pyx_n_s_itertools, __pyx_k_itertools, sizeof(__pyx_k_itertools), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_main, __pyx_k_main, sizeof(__pyx_k_main), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_name, __pyx_k_name, sizeof(__pyx_k_name), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_os, __pyx_k_os, sizeof(__pyx_k_os), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_platform, __pyx_k_platform, sizeof(__pyx_k_platform), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_pysam_libcsamfile, __pyx_k_pysam_libcsamfile, sizeof(__pyx_k_pysam_libcsamfile), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_pyx_state, __pyx_k_pyx_state, sizeof(__pyx_k_pyx_state), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_pyx_vtable, __pyx_k_pyx_vtable, sizeof(__pyx_k_pyx_vtable), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_re, __pyx_k_re, sizeof(__pyx_k_re), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_reduce, __pyx_k_reduce, sizeof(__pyx_k_reduce), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_reduce_cython, __pyx_k_reduce_cython, sizeof(__pyx_k_reduce_cython), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_reduce_ex, __pyx_k_reduce_ex, sizeof(__pyx_k_reduce_ex), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_self, __pyx_k_self, sizeof(__pyx_k_self), 0, 0, 1, 1}, jpayne@69: {&__pyx_kp_s_self__delegate_cannot_be_convert, __pyx_k_self__delegate_cannot_be_convert, sizeof(__pyx_k_self__delegate_cannot_be_convert), 0, 0, 1, 0}, jpayne@69: {&__pyx_kp_s_self_b_self_htsfile_self_index_c, __pyx_k_self_b_self_htsfile_self_index_c, sizeof(__pyx_k_self_b_self_htsfile_self_index_c), 0, 0, 1, 0}, jpayne@69: {&__pyx_n_s_setstate, __pyx_k_setstate, sizeof(__pyx_k_setstate), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_setstate_cython, __pyx_k_setstate_cython, sizeof(__pyx_k_setstate_cython), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_spec, __pyx_k_spec, sizeof(__pyx_k_spec), 0, 0, 1, 1}, jpayne@69: {&__pyx_kp_s_stringsource, __pyx_k_stringsource, sizeof(__pyx_k_stringsource), 0, 0, 1, 0}, jpayne@69: {&__pyx_n_s_struct, __pyx_k_struct, sizeof(__pyx_k_struct), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_sys, __pyx_k_sys, sizeof(__pyx_k_sys), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_tempfile, __pyx_k_tempfile, sizeof(__pyx_k_tempfile), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_test, __pyx_k_test, sizeof(__pyx_k_test), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_types, __pyx_k_types, sizeof(__pyx_k_types), 0, 0, 1, 1}, jpayne@69: {&__pyx_n_s_warnings, __pyx_k_warnings, sizeof(__pyx_k_warnings), 0, 0, 1, 1}, jpayne@69: {0, 0, 0, 0, 0, 0, 0} jpayne@69: }; jpayne@69: return __Pyx_InitStrings(__pyx_string_tab); jpayne@69: } jpayne@69: /* #### Code section: cached_builtins ### */ jpayne@69: static CYTHON_SMALL_CODE int __Pyx_InitCachedBuiltins(void) { jpayne@69: __pyx_builtin_TypeError = __Pyx_GetBuiltinName(__pyx_n_s_TypeError); if (!__pyx_builtin_TypeError) __PYX_ERR(0, 2, __pyx_L1_error) jpayne@69: __pyx_builtin_MemoryError = __Pyx_GetBuiltinName(__pyx_n_s_MemoryError); if (!__pyx_builtin_MemoryError) __PYX_ERR(2, 120, __pyx_L1_error) jpayne@69: return 0; jpayne@69: __pyx_L1_error:; jpayne@69: return -1; jpayne@69: } jpayne@69: /* #### Code section: cached_constants ### */ jpayne@69: jpayne@69: static CYTHON_SMALL_CODE int __Pyx_InitCachedConstants(void) { jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: __Pyx_RefNannySetupContext("__Pyx_InitCachedConstants", 0); jpayne@69: jpayne@69: /* "(tree fragment)":1 jpayne@69: * def __reduce_cython__(self): # <<<<<<<<<<<<<< jpayne@69: * raise TypeError, "self.b,self.htsfile,self.index cannot be converted to a Python object for pickling" jpayne@69: * def __setstate_cython__(self, __pyx_state): jpayne@69: */ jpayne@69: __pyx_tuple__6 = PyTuple_Pack(1, __pyx_n_s_self); if (unlikely(!__pyx_tuple__6)) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_tuple__6); jpayne@69: __Pyx_GIVEREF(__pyx_tuple__6); jpayne@69: __pyx_codeobj_ = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__6, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_stringsource, __pyx_n_s_reduce_cython, 1, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj_)) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@69: jpayne@69: /* "(tree fragment)":3 jpayne@69: * def __reduce_cython__(self): jpayne@69: * raise TypeError, "self.b,self.htsfile,self.index cannot be converted to a Python object for pickling" jpayne@69: * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<< jpayne@69: * raise TypeError, "self.b,self.htsfile,self.index cannot be converted to a Python object for pickling" jpayne@69: */ jpayne@69: __pyx_tuple__7 = PyTuple_Pack(2, __pyx_n_s_self, __pyx_n_s_pyx_state); if (unlikely(!__pyx_tuple__7)) __PYX_ERR(0, 3, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_tuple__7); jpayne@69: __Pyx_GIVEREF(__pyx_tuple__7); jpayne@69: __pyx_codeobj__2 = (PyObject*)__Pyx_PyCode_New(2, 0, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_stringsource, __pyx_n_s_setstate_cython, 3, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__2)) __PYX_ERR(0, 3, __pyx_L1_error) jpayne@69: jpayne@69: /* "(tree fragment)":1 jpayne@69: * def __reduce_cython__(self): # <<<<<<<<<<<<<< jpayne@69: * raise TypeError, "self._delegate cannot be converted to a Python object for pickling" jpayne@69: * def __setstate_cython__(self, __pyx_state): jpayne@69: */ jpayne@69: __pyx_codeobj__3 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__6, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_stringsource, __pyx_n_s_reduce_cython, 1, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__3)) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@69: jpayne@69: /* "(tree fragment)":3 jpayne@69: * def __reduce_cython__(self): jpayne@69: * raise TypeError, "self._delegate cannot be converted to a Python object for pickling" jpayne@69: * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<< jpayne@69: * raise TypeError, "self._delegate cannot be converted to a Python object for pickling" jpayne@69: */ jpayne@69: __pyx_codeobj__4 = (PyObject*)__Pyx_PyCode_New(2, 0, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_stringsource, __pyx_n_s_setstate_cython, 3, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__4)) __PYX_ERR(0, 3, __pyx_L1_error) jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return 0; jpayne@69: __pyx_L1_error:; jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return -1; jpayne@69: } jpayne@69: /* #### Code section: init_constants ### */ jpayne@69: jpayne@69: static CYTHON_SMALL_CODE int __Pyx_InitConstants(void) { jpayne@69: if (__Pyx_CreateStringTabAndInitStrings() < 0) __PYX_ERR(3, 1, __pyx_L1_error); jpayne@69: return 0; jpayne@69: __pyx_L1_error:; jpayne@69: return -1; jpayne@69: } jpayne@69: /* #### Code section: init_globals ### */ jpayne@69: jpayne@69: static CYTHON_SMALL_CODE int __Pyx_InitGlobals(void) { jpayne@69: return 0; jpayne@69: } jpayne@69: /* #### Code section: init_module ### */ jpayne@69: jpayne@69: static CYTHON_SMALL_CODE int __Pyx_modinit_global_init_code(void); /*proto*/ jpayne@69: static CYTHON_SMALL_CODE int __Pyx_modinit_variable_export_code(void); /*proto*/ jpayne@69: static CYTHON_SMALL_CODE int __Pyx_modinit_function_export_code(void); /*proto*/ jpayne@69: static CYTHON_SMALL_CODE int __Pyx_modinit_type_init_code(void); /*proto*/ jpayne@69: static CYTHON_SMALL_CODE int __Pyx_modinit_type_import_code(void); /*proto*/ jpayne@69: static CYTHON_SMALL_CODE int __Pyx_modinit_variable_import_code(void); /*proto*/ jpayne@69: static CYTHON_SMALL_CODE int __Pyx_modinit_function_import_code(void); /*proto*/ jpayne@69: jpayne@69: static int __Pyx_modinit_global_init_code(void) { jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: __Pyx_RefNannySetupContext("__Pyx_modinit_global_init_code", 0); jpayne@69: /*--- Global init code ---*/ jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return 0; jpayne@69: } jpayne@69: jpayne@69: static int __Pyx_modinit_variable_export_code(void) { jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: __Pyx_RefNannySetupContext("__Pyx_modinit_variable_export_code", 0); jpayne@69: /*--- Variable export code ---*/ jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return 0; jpayne@69: } jpayne@69: jpayne@69: static int __Pyx_modinit_function_export_code(void) { jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: __Pyx_RefNannySetupContext("__Pyx_modinit_function_export_code", 0); jpayne@69: /*--- Function export code ---*/ jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return 0; jpayne@69: } jpayne@69: jpayne@69: static int __Pyx_modinit_type_init_code(void) { jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: PyObject *__pyx_t_1 = NULL; jpayne@69: PyObject *__pyx_t_2 = NULL; jpayne@69: PyObject *__pyx_t_3 = NULL; jpayne@69: int __pyx_lineno = 0; jpayne@69: const char *__pyx_filename = NULL; jpayne@69: int __pyx_clineno = 0; jpayne@69: __Pyx_RefNannySetupContext("__Pyx_modinit_type_init_code", 0); jpayne@69: /*--- Type init code ---*/ jpayne@69: __pyx_t_1 = PyImport_ImportModule("pysam.libcalignedsegment"); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_1); jpayne@69: __pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcalignedsegment", "AlignedSegment", sizeof(struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_18libcalignedsegment_AlignedSegment = (struct __pyx_vtabstruct_5pysam_18libcalignedsegment_AlignedSegment*)__Pyx_GetVtable(__pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment); if (unlikely(!__pyx_vtabptr_5pysam_18libcalignedsegment_AlignedSegment)) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_11libcsamfile_AlignedRead = &__pyx_vtable_5pysam_11libcsamfile_AlignedRead; jpayne@69: __pyx_vtable_5pysam_11libcsamfile_AlignedRead.__pyx_base = *__pyx_vtabptr_5pysam_18libcalignedsegment_AlignedSegment; jpayne@69: #if CYTHON_USE_TYPE_SPECS jpayne@69: __pyx_t_2 = PyTuple_Pack(1, (PyObject *)__pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment); if (unlikely(!__pyx_t_2)) __PYX_ERR(3, 31, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: __pyx_ptype_5pysam_11libcsamfile_AlignedRead = (PyTypeObject *) __Pyx_PyType_FromModuleAndSpec(__pyx_m, &__pyx_type_5pysam_11libcsamfile_AlignedRead_spec, __pyx_t_2); jpayne@69: __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: if (unlikely(!__pyx_ptype_5pysam_11libcsamfile_AlignedRead)) __PYX_ERR(3, 31, __pyx_L1_error) jpayne@69: if (__Pyx_fix_up_extension_type_from_spec(&__pyx_type_5pysam_11libcsamfile_AlignedRead_spec, __pyx_ptype_5pysam_11libcsamfile_AlignedRead) < 0) __PYX_ERR(3, 31, __pyx_L1_error) jpayne@69: #else jpayne@69: __pyx_ptype_5pysam_11libcsamfile_AlignedRead = &__pyx_type_5pysam_11libcsamfile_AlignedRead; jpayne@69: #endif jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: __pyx_ptype_5pysam_11libcsamfile_AlignedRead->tp_dealloc = __pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment->tp_dealloc; jpayne@69: __pyx_ptype_5pysam_11libcsamfile_AlignedRead->tp_base = __pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment; jpayne@69: #endif jpayne@69: #if !CYTHON_USE_TYPE_SPECS jpayne@69: if (__Pyx_PyType_Ready(__pyx_ptype_5pysam_11libcsamfile_AlignedRead) < 0) __PYX_ERR(3, 31, __pyx_L1_error) jpayne@69: #endif jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: __pyx_ptype_5pysam_11libcsamfile_AlignedRead->tp_print = 0; jpayne@69: #endif jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_ptype_5pysam_11libcsamfile_AlignedRead->tp_dictoffset && __pyx_ptype_5pysam_11libcsamfile_AlignedRead->tp_getattro == PyObject_GenericGetAttr)) { jpayne@69: __pyx_ptype_5pysam_11libcsamfile_AlignedRead->tp_getattro = __Pyx_PyObject_GenericGetAttr; jpayne@69: } jpayne@69: #endif jpayne@69: if (__Pyx_SetVtable(__pyx_ptype_5pysam_11libcsamfile_AlignedRead, __pyx_vtabptr_5pysam_11libcsamfile_AlignedRead) < 0) __PYX_ERR(3, 31, __pyx_L1_error) jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: if (__Pyx_MergeVtables(__pyx_ptype_5pysam_11libcsamfile_AlignedRead) < 0) __PYX_ERR(3, 31, __pyx_L1_error) jpayne@69: #endif jpayne@69: if (PyObject_SetAttr(__pyx_m, __pyx_n_s_AlignedRead, (PyObject *) __pyx_ptype_5pysam_11libcsamfile_AlignedRead) < 0) __PYX_ERR(3, 31, __pyx_L1_error) jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: if (__Pyx_setup_reduce((PyObject *) __pyx_ptype_5pysam_11libcsamfile_AlignedRead) < 0) __PYX_ERR(3, 31, __pyx_L1_error) jpayne@69: #endif jpayne@69: __pyx_t_2 = PyImport_ImportModule("pysam.libcalignmentfile"); if (unlikely(!__pyx_t_2)) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: __pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile = __Pyx_ImportType_3_0_11(__pyx_t_2, "pysam.libcalignmentfile", "AlignmentFile", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_17libcalignmentfile_AlignmentFile = (struct __pyx_vtabstruct_5pysam_17libcalignmentfile_AlignmentFile*)__Pyx_GetVtable(__pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile); if (unlikely(!__pyx_vtabptr_5pysam_17libcalignmentfile_AlignmentFile)) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_11libcsamfile_Samfile = &__pyx_vtable_5pysam_11libcsamfile_Samfile; jpayne@69: __pyx_vtable_5pysam_11libcsamfile_Samfile.__pyx_base = *__pyx_vtabptr_5pysam_17libcalignmentfile_AlignmentFile; jpayne@69: #if CYTHON_USE_TYPE_SPECS jpayne@69: __pyx_t_3 = PyTuple_Pack(1, (PyObject *)__pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile); if (unlikely(!__pyx_t_3)) __PYX_ERR(3, 23, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_3); jpayne@69: __pyx_ptype_5pysam_11libcsamfile_Samfile = (PyTypeObject *) __Pyx_PyType_FromModuleAndSpec(__pyx_m, &__pyx_type_5pysam_11libcsamfile_Samfile_spec, __pyx_t_3); jpayne@69: __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@69: if (unlikely(!__pyx_ptype_5pysam_11libcsamfile_Samfile)) __PYX_ERR(3, 23, __pyx_L1_error) jpayne@69: if (__Pyx_fix_up_extension_type_from_spec(&__pyx_type_5pysam_11libcsamfile_Samfile_spec, __pyx_ptype_5pysam_11libcsamfile_Samfile) < 0) __PYX_ERR(3, 23, __pyx_L1_error) jpayne@69: #else jpayne@69: __pyx_ptype_5pysam_11libcsamfile_Samfile = &__pyx_type_5pysam_11libcsamfile_Samfile; jpayne@69: #endif jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: __pyx_ptype_5pysam_11libcsamfile_Samfile->tp_dealloc = __pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile->tp_dealloc; jpayne@69: __pyx_ptype_5pysam_11libcsamfile_Samfile->tp_base = __pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile; jpayne@69: #endif jpayne@69: #if !CYTHON_USE_TYPE_SPECS jpayne@69: if (__Pyx_PyType_Ready(__pyx_ptype_5pysam_11libcsamfile_Samfile) < 0) __PYX_ERR(3, 23, __pyx_L1_error) jpayne@69: #endif jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: __pyx_ptype_5pysam_11libcsamfile_Samfile->tp_print = 0; jpayne@69: #endif jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_ptype_5pysam_11libcsamfile_Samfile->tp_dictoffset && __pyx_ptype_5pysam_11libcsamfile_Samfile->tp_getattro == PyObject_GenericGetAttr)) { jpayne@69: __pyx_ptype_5pysam_11libcsamfile_Samfile->tp_getattro = __Pyx_PyObject_GenericGetAttr; jpayne@69: } jpayne@69: #endif jpayne@69: if (__Pyx_SetVtable(__pyx_ptype_5pysam_11libcsamfile_Samfile, __pyx_vtabptr_5pysam_11libcsamfile_Samfile) < 0) __PYX_ERR(3, 23, __pyx_L1_error) jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: if (__Pyx_MergeVtables(__pyx_ptype_5pysam_11libcsamfile_Samfile) < 0) __PYX_ERR(3, 23, __pyx_L1_error) jpayne@69: #endif jpayne@69: if (PyObject_SetAttr(__pyx_m, __pyx_n_s_Samfile, (PyObject *) __pyx_ptype_5pysam_11libcsamfile_Samfile) < 0) __PYX_ERR(3, 23, __pyx_L1_error) jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: if (__Pyx_setup_reduce((PyObject *) __pyx_ptype_5pysam_11libcsamfile_Samfile) < 0) __PYX_ERR(3, 23, __pyx_L1_error) jpayne@69: #endif jpayne@69: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@69: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return 0; jpayne@69: __pyx_L1_error:; jpayne@69: __Pyx_XDECREF(__pyx_t_1); jpayne@69: __Pyx_XDECREF(__pyx_t_2); jpayne@69: __Pyx_XDECREF(__pyx_t_3); jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return -1; jpayne@69: } jpayne@69: jpayne@69: static int __Pyx_modinit_type_import_code(void) { jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: PyObject *__pyx_t_1 = NULL; jpayne@69: int __pyx_lineno = 0; jpayne@69: const char *__pyx_filename = NULL; jpayne@69: int __pyx_clineno = 0; jpayne@69: __Pyx_RefNannySetupContext("__Pyx_modinit_type_import_code", 0); jpayne@69: /*--- Type import code ---*/ jpayne@69: __pyx_t_1 = PyImport_ImportModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_t_1)) __PYX_ERR(4, 9, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_1); jpayne@69: __pyx_ptype_7cpython_4type_type = __Pyx_ImportType_3_0_11(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "type", jpayne@69: #if defined(PYPY_VERSION_NUM) && PYPY_VERSION_NUM < 0x050B0000 jpayne@69: sizeof(PyTypeObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(PyTypeObject), jpayne@69: #elif CYTHON_COMPILING_IN_LIMITED_API jpayne@69: sizeof(PyTypeObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(PyTypeObject), jpayne@69: #else jpayne@69: sizeof(PyHeapTypeObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(PyHeapTypeObject), jpayne@69: #endif jpayne@69: __Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_7cpython_4type_type) __PYX_ERR(4, 9, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@69: __pyx_t_1 = PyImport_ImportModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_t_1)) __PYX_ERR(5, 8, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_1); jpayne@69: __pyx_ptype_7cpython_4bool_bool = __Pyx_ImportType_3_0_11(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "bool", sizeof(PyBoolObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(PyBoolObject),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_7cpython_4bool_bool) __PYX_ERR(5, 8, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@69: __pyx_t_1 = PyImport_ImportModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_t_1)) __PYX_ERR(6, 15, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_1); jpayne@69: __pyx_ptype_7cpython_7complex_complex = __Pyx_ImportType_3_0_11(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "complex", sizeof(PyComplexObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(PyComplexObject),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_7cpython_7complex_complex) __PYX_ERR(6, 15, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@69: __pyx_t_1 = PyImport_ImportModule("array"); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 69, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_1); jpayne@69: __pyx_ptype_7cpython_5array_array = __Pyx_ImportType_3_0_11(__pyx_t_1, "array", "array", sizeof(arrayobject), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(arrayobject),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_7cpython_5array_array) __PYX_ERR(2, 69, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@69: __pyx_t_1 = PyImport_ImportModule("pysam.libchtslib"); if (unlikely(!__pyx_t_1)) __PYX_ERR(7, 2706, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_1); jpayne@69: __pyx_ptype_5pysam_10libchtslib_HTSFile = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libchtslib", "HTSFile", sizeof(struct __pyx_obj_5pysam_10libchtslib_HTSFile), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_10libchtslib_HTSFile),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_10libchtslib_HTSFile) __PYX_ERR(7, 2706, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_10libchtslib_HTSFile = (struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile*)__Pyx_GetVtable(__pyx_ptype_5pysam_10libchtslib_HTSFile); if (unlikely(!__pyx_vtabptr_5pysam_10libchtslib_HTSFile)) __PYX_ERR(7, 2706, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@69: __pyx_t_1 = PyImport_ImportModule("pysam.libcfaidx"); if (unlikely(!__pyx_t_1)) __PYX_ERR(8, 38, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_1); jpayne@69: __pyx_ptype_5pysam_9libcfaidx_FastaFile = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcfaidx", "FastaFile", sizeof(struct __pyx_obj_5pysam_9libcfaidx_FastaFile), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_9libcfaidx_FastaFile),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_9libcfaidx_FastaFile) __PYX_ERR(8, 38, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_9libcfaidx_FastaFile = (struct __pyx_vtabstruct_5pysam_9libcfaidx_FastaFile*)__Pyx_GetVtable(__pyx_ptype_5pysam_9libcfaidx_FastaFile); if (unlikely(!__pyx_vtabptr_5pysam_9libcfaidx_FastaFile)) __PYX_ERR(8, 38, __pyx_L1_error) jpayne@69: __pyx_ptype_5pysam_9libcfaidx_FastqProxy = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcfaidx", "FastqProxy", sizeof(struct __pyx_obj_5pysam_9libcfaidx_FastqProxy), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_9libcfaidx_FastqProxy),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_9libcfaidx_FastqProxy) __PYX_ERR(8, 46, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_9libcfaidx_FastqProxy = (struct __pyx_vtabstruct_5pysam_9libcfaidx_FastqProxy*)__Pyx_GetVtable(__pyx_ptype_5pysam_9libcfaidx_FastqProxy); if (unlikely(!__pyx_vtabptr_5pysam_9libcfaidx_FastqProxy)) __PYX_ERR(8, 46, __pyx_L1_error) jpayne@69: __pyx_ptype_5pysam_9libcfaidx_FastxRecord = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcfaidx", "FastxRecord", sizeof(struct __pyx_obj_5pysam_9libcfaidx_FastxRecord), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_9libcfaidx_FastxRecord),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_9libcfaidx_FastxRecord) __PYX_ERR(8, 53, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_9libcfaidx_FastxRecord = (struct __pyx_vtabstruct_5pysam_9libcfaidx_FastxRecord*)__Pyx_GetVtable(__pyx_ptype_5pysam_9libcfaidx_FastxRecord); if (unlikely(!__pyx_vtabptr_5pysam_9libcfaidx_FastxRecord)) __PYX_ERR(8, 53, __pyx_L1_error) jpayne@69: __pyx_ptype_5pysam_9libcfaidx_FastxFile = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcfaidx", "FastxFile", sizeof(struct __pyx_obj_5pysam_9libcfaidx_FastxFile), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_9libcfaidx_FastxFile),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_9libcfaidx_FastxFile) __PYX_ERR(8, 62, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_9libcfaidx_FastxFile = (struct __pyx_vtabstruct_5pysam_9libcfaidx_FastxFile*)__Pyx_GetVtable(__pyx_ptype_5pysam_9libcfaidx_FastxFile); if (unlikely(!__pyx_vtabptr_5pysam_9libcfaidx_FastxFile)) __PYX_ERR(8, 62, __pyx_L1_error) jpayne@69: __pyx_ptype_5pysam_9libcfaidx_FastqFile = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcfaidx", "FastqFile", sizeof(struct __pyx_obj_5pysam_9libcfaidx_FastqFile), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_9libcfaidx_FastqFile),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_9libcfaidx_FastqFile) __PYX_ERR(8, 74, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_9libcfaidx_FastqFile = (struct __pyx_vtabstruct_5pysam_9libcfaidx_FastqFile*)__Pyx_GetVtable(__pyx_ptype_5pysam_9libcfaidx_FastqFile); if (unlikely(!__pyx_vtabptr_5pysam_9libcfaidx_FastqFile)) __PYX_ERR(8, 74, __pyx_L1_error) jpayne@69: __pyx_ptype_5pysam_9libcfaidx_Fastafile = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcfaidx", "Fastafile", sizeof(struct __pyx_obj_5pysam_9libcfaidx_Fastafile), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_9libcfaidx_Fastafile),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_9libcfaidx_Fastafile) __PYX_ERR(8, 79, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_9libcfaidx_Fastafile = (struct __pyx_vtabstruct_5pysam_9libcfaidx_Fastafile*)__Pyx_GetVtable(__pyx_ptype_5pysam_9libcfaidx_Fastafile); if (unlikely(!__pyx_vtabptr_5pysam_9libcfaidx_Fastafile)) __PYX_ERR(8, 79, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@69: __pyx_t_1 = PyImport_ImportModule("pysam.libcalignedsegment"); if (unlikely(!__pyx_t_1)) __PYX_ERR(9, 66, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_1); jpayne@69: __pyx_ptype_5pysam_18libcalignedsegment_PileupColumn = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcalignedsegment", "PileupColumn", sizeof(struct __pyx_obj_5pysam_18libcalignedsegment_PileupColumn), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_18libcalignedsegment_PileupColumn),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_18libcalignedsegment_PileupColumn) __PYX_ERR(9, 66, __pyx_L1_error) jpayne@69: __pyx_ptype_5pysam_18libcalignedsegment_PileupRead = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcalignedsegment", "PileupRead", sizeof(struct __pyx_obj_5pysam_18libcalignedsegment_PileupRead), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_18libcalignedsegment_PileupRead),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_18libcalignedsegment_PileupRead) __PYX_ERR(9, 76, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@69: __pyx_t_1 = PyImport_ImportModule("pysam.libcalignmentfile"); if (unlikely(!__pyx_t_1)) __PYX_ERR(10, 42, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_1); jpayne@69: __pyx_ptype_5pysam_17libcalignmentfile_AlignmentHeader = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcalignmentfile", "AlignmentHeader", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentHeader), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentHeader),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_17libcalignmentfile_AlignmentHeader) __PYX_ERR(10, 42, __pyx_L1_error) jpayne@69: __pyx_ptype_5pysam_17libcalignmentfile_IteratorRow = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcalignmentfile", "IteratorRow", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRow), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRow),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorRow) __PYX_ERR(10, 62, __pyx_L1_error) jpayne@69: __pyx_ptype_5pysam_17libcalignmentfile_IteratorRowRegion = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcalignmentfile", "IteratorRowRegion", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowRegion), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowRegion),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowRegion) __PYX_ERR(10, 72, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowRegion = (struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowRegion*)__Pyx_GetVtable(__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowRegion); if (unlikely(!__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowRegion)) __PYX_ERR(10, 72, __pyx_L1_error) jpayne@69: __pyx_ptype_5pysam_17libcalignmentfile_IteratorRowHead = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcalignmentfile", "IteratorRowHead", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowHead), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowHead),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowHead) __PYX_ERR(10, 78, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowHead = (struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowHead*)__Pyx_GetVtable(__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowHead); if (unlikely(!__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowHead)) __PYX_ERR(10, 78, __pyx_L1_error) jpayne@69: __pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAll = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcalignmentfile", "IteratorRowAll", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowAll), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowAll),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAll) __PYX_ERR(10, 85, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowAll = (struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowAll*)__Pyx_GetVtable(__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAll); if (unlikely(!__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowAll)) __PYX_ERR(10, 85, __pyx_L1_error) jpayne@69: __pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAllRefs = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcalignmentfile", "IteratorRowAllRefs", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowAllRefs), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowAllRefs),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAllRefs) __PYX_ERR(10, 90, __pyx_L1_error) jpayne@69: __pyx_ptype_5pysam_17libcalignmentfile_IteratorRowSelection = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcalignmentfile", "IteratorRowSelection", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowSelection), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowSelection),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowSelection) __PYX_ERR(10, 95, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowSelection = (struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowSelection*)__Pyx_GetVtable(__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowSelection); if (unlikely(!__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowSelection)) __PYX_ERR(10, 95, __pyx_L1_error) jpayne@69: __pyx_ptype_5pysam_17libcalignmentfile_IteratorColumn = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcalignmentfile", "IteratorColumn", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumn) __PYX_ERR(10, 102, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumn = (struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumn*)__Pyx_GetVtable(__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumn); if (unlikely(!__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumn)) __PYX_ERR(10, 102, __pyx_L1_error) jpayne@69: __pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnRegion = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcalignmentfile", "IteratorColumnRegion", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnRegion), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnRegion),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnRegion) __PYX_ERR(10, 134, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumnRegion = (struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumnRegion*)__Pyx_GetVtable(__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnRegion); if (unlikely(!__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumnRegion)) __PYX_ERR(10, 134, __pyx_L1_error) jpayne@69: __pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAllRefs = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcalignmentfile", "IteratorColumnAllRefs", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnAllRefs), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnAllRefs),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAllRefs) __PYX_ERR(10, 140, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumnAllRefs = (struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumnAllRefs*)__Pyx_GetVtable(__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAllRefs); if (unlikely(!__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumnAllRefs)) __PYX_ERR(10, 140, __pyx_L1_error) jpayne@69: __pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAll = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcalignmentfile", "IteratorColumnAll", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnAll), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnAll),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAll) __PYX_ERR(10, 144, __pyx_L1_error) jpayne@69: __pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumnAll = (struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumnAll*)__Pyx_GetVtable(__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAll); if (unlikely(!__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumnAll)) __PYX_ERR(10, 144, __pyx_L1_error) jpayne@69: __pyx_ptype_5pysam_17libcalignmentfile_IndexedReads = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libcalignmentfile", "IndexedReads", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IndexedReads), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_17libcalignmentfile_IndexedReads),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_17libcalignmentfile_IndexedReads) __PYX_ERR(10, 148, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return 0; jpayne@69: __pyx_L1_error:; jpayne@69: __Pyx_XDECREF(__pyx_t_1); jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return -1; jpayne@69: } jpayne@69: jpayne@69: static int __Pyx_modinit_variable_import_code(void) { jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: __Pyx_RefNannySetupContext("__Pyx_modinit_variable_import_code", 0); jpayne@69: /*--- Variable import code ---*/ jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return 0; jpayne@69: } jpayne@69: jpayne@69: static int __Pyx_modinit_function_import_code(void) { jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: __Pyx_RefNannySetupContext("__Pyx_modinit_function_import_code", 0); jpayne@69: /*--- Function import code ---*/ jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: return 0; jpayne@69: } jpayne@69: jpayne@69: jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: #if CYTHON_PEP489_MULTI_PHASE_INIT jpayne@69: static PyObject* __pyx_pymod_create(PyObject *spec, PyModuleDef *def); /*proto*/ jpayne@69: static int __pyx_pymod_exec_libcsamfile(PyObject* module); /*proto*/ jpayne@69: static PyModuleDef_Slot __pyx_moduledef_slots[] = { jpayne@69: {Py_mod_create, (void*)__pyx_pymod_create}, jpayne@69: {Py_mod_exec, (void*)__pyx_pymod_exec_libcsamfile}, jpayne@69: {0, NULL} jpayne@69: }; jpayne@69: #endif jpayne@69: jpayne@69: #ifdef __cplusplus jpayne@69: namespace { jpayne@69: struct PyModuleDef __pyx_moduledef = jpayne@69: #else jpayne@69: static struct PyModuleDef __pyx_moduledef = jpayne@69: #endif jpayne@69: { jpayne@69: PyModuleDef_HEAD_INIT, jpayne@69: "libcsamfile", jpayne@69: 0, /* m_doc */ jpayne@69: #if CYTHON_PEP489_MULTI_PHASE_INIT jpayne@69: 0, /* m_size */ jpayne@69: #elif CYTHON_USE_MODULE_STATE jpayne@69: sizeof(__pyx_mstate), /* m_size */ jpayne@69: #else jpayne@69: -1, /* m_size */ jpayne@69: #endif jpayne@69: __pyx_methods /* m_methods */, jpayne@69: #if CYTHON_PEP489_MULTI_PHASE_INIT jpayne@69: __pyx_moduledef_slots, /* m_slots */ jpayne@69: #else jpayne@69: NULL, /* m_reload */ jpayne@69: #endif jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: __pyx_m_traverse, /* m_traverse */ jpayne@69: __pyx_m_clear, /* m_clear */ jpayne@69: NULL /* m_free */ jpayne@69: #else jpayne@69: NULL, /* m_traverse */ jpayne@69: NULL, /* m_clear */ jpayne@69: NULL /* m_free */ jpayne@69: #endif jpayne@69: }; jpayne@69: #ifdef __cplusplus jpayne@69: } /* anonymous namespace */ jpayne@69: #endif jpayne@69: #endif jpayne@69: jpayne@69: #ifndef CYTHON_NO_PYINIT_EXPORT jpayne@69: #define __Pyx_PyMODINIT_FUNC PyMODINIT_FUNC jpayne@69: #elif PY_MAJOR_VERSION < 3 jpayne@69: #ifdef __cplusplus jpayne@69: #define __Pyx_PyMODINIT_FUNC extern "C" void jpayne@69: #else jpayne@69: #define __Pyx_PyMODINIT_FUNC void jpayne@69: #endif jpayne@69: #else jpayne@69: #ifdef __cplusplus jpayne@69: #define __Pyx_PyMODINIT_FUNC extern "C" PyObject * jpayne@69: #else jpayne@69: #define __Pyx_PyMODINIT_FUNC PyObject * jpayne@69: #endif jpayne@69: #endif jpayne@69: jpayne@69: jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: __Pyx_PyMODINIT_FUNC initlibcsamfile(void) CYTHON_SMALL_CODE; /*proto*/ jpayne@69: __Pyx_PyMODINIT_FUNC initlibcsamfile(void) jpayne@69: #else jpayne@69: __Pyx_PyMODINIT_FUNC PyInit_libcsamfile(void) CYTHON_SMALL_CODE; /*proto*/ jpayne@69: __Pyx_PyMODINIT_FUNC PyInit_libcsamfile(void) jpayne@69: #if CYTHON_PEP489_MULTI_PHASE_INIT jpayne@69: { jpayne@69: return PyModuleDef_Init(&__pyx_moduledef); jpayne@69: } jpayne@69: static CYTHON_SMALL_CODE int __Pyx_check_single_interpreter(void) { jpayne@69: #if PY_VERSION_HEX >= 0x030700A1 jpayne@69: static PY_INT64_T main_interpreter_id = -1; jpayne@69: PY_INT64_T current_id = PyInterpreterState_GetID(PyThreadState_Get()->interp); jpayne@69: if (main_interpreter_id == -1) { jpayne@69: main_interpreter_id = current_id; jpayne@69: return (unlikely(current_id == -1)) ? -1 : 0; jpayne@69: } else if (unlikely(main_interpreter_id != current_id)) jpayne@69: #else jpayne@69: static PyInterpreterState *main_interpreter = NULL; jpayne@69: PyInterpreterState *current_interpreter = PyThreadState_Get()->interp; jpayne@69: if (!main_interpreter) { jpayne@69: main_interpreter = current_interpreter; jpayne@69: } else if (unlikely(main_interpreter != current_interpreter)) jpayne@69: #endif jpayne@69: { jpayne@69: PyErr_SetString( jpayne@69: PyExc_ImportError, jpayne@69: "Interpreter change detected - this module can only be loaded into one interpreter per process."); jpayne@69: return -1; jpayne@69: } jpayne@69: return 0; jpayne@69: } jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: static CYTHON_SMALL_CODE int __Pyx_copy_spec_to_module(PyObject *spec, PyObject *module, const char* from_name, const char* to_name, int allow_none) jpayne@69: #else jpayne@69: static CYTHON_SMALL_CODE int __Pyx_copy_spec_to_module(PyObject *spec, PyObject *moddict, const char* from_name, const char* to_name, int allow_none) jpayne@69: #endif jpayne@69: { jpayne@69: PyObject *value = PyObject_GetAttrString(spec, from_name); jpayne@69: int result = 0; jpayne@69: if (likely(value)) { jpayne@69: if (allow_none || value != Py_None) { jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: result = PyModule_AddObject(module, to_name, value); jpayne@69: #else jpayne@69: result = PyDict_SetItemString(moddict, to_name, value); jpayne@69: #endif jpayne@69: } jpayne@69: Py_DECREF(value); jpayne@69: } else if (PyErr_ExceptionMatches(PyExc_AttributeError)) { jpayne@69: PyErr_Clear(); jpayne@69: } else { jpayne@69: result = -1; jpayne@69: } jpayne@69: return result; jpayne@69: } jpayne@69: static CYTHON_SMALL_CODE PyObject* __pyx_pymod_create(PyObject *spec, PyModuleDef *def) { jpayne@69: PyObject *module = NULL, *moddict, *modname; jpayne@69: CYTHON_UNUSED_VAR(def); jpayne@69: if (__Pyx_check_single_interpreter()) jpayne@69: return NULL; jpayne@69: if (__pyx_m) jpayne@69: return __Pyx_NewRef(__pyx_m); jpayne@69: modname = PyObject_GetAttrString(spec, "name"); jpayne@69: if (unlikely(!modname)) goto bad; jpayne@69: module = PyModule_NewObject(modname); jpayne@69: Py_DECREF(modname); jpayne@69: if (unlikely(!module)) goto bad; jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: moddict = module; jpayne@69: #else jpayne@69: moddict = PyModule_GetDict(module); jpayne@69: if (unlikely(!moddict)) goto bad; jpayne@69: #endif jpayne@69: if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "loader", "__loader__", 1) < 0)) goto bad; jpayne@69: if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "origin", "__file__", 1) < 0)) goto bad; jpayne@69: if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "parent", "__package__", 1) < 0)) goto bad; jpayne@69: if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "submodule_search_locations", "__path__", 0) < 0)) goto bad; jpayne@69: return module; jpayne@69: bad: jpayne@69: Py_XDECREF(module); jpayne@69: return NULL; jpayne@69: } jpayne@69: jpayne@69: jpayne@69: static CYTHON_SMALL_CODE int __pyx_pymod_exec_libcsamfile(PyObject *__pyx_pyinit_module) jpayne@69: #endif jpayne@69: #endif jpayne@69: { jpayne@69: int stringtab_initialized = 0; jpayne@69: #if CYTHON_USE_MODULE_STATE jpayne@69: int pystate_addmodule_run = 0; jpayne@69: #endif jpayne@69: __Pyx_TraceDeclarations jpayne@69: PyObject *__pyx_t_1 = NULL; jpayne@69: PyObject *__pyx_t_2 = NULL; jpayne@69: int __pyx_lineno = 0; jpayne@69: const char *__pyx_filename = NULL; jpayne@69: int __pyx_clineno = 0; jpayne@69: __Pyx_RefNannyDeclarations jpayne@69: #if CYTHON_PEP489_MULTI_PHASE_INIT jpayne@69: if (__pyx_m) { jpayne@69: if (__pyx_m == __pyx_pyinit_module) return 0; jpayne@69: PyErr_SetString(PyExc_RuntimeError, "Module 'libcsamfile' has already been imported. Re-initialisation is not supported."); jpayne@69: return -1; jpayne@69: } jpayne@69: #elif PY_MAJOR_VERSION >= 3 jpayne@69: if (__pyx_m) return __Pyx_NewRef(__pyx_m); jpayne@69: #endif jpayne@69: /*--- Module creation code ---*/ jpayne@69: #if CYTHON_PEP489_MULTI_PHASE_INIT jpayne@69: __pyx_m = __pyx_pyinit_module; jpayne@69: Py_INCREF(__pyx_m); jpayne@69: #else jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: __pyx_m = Py_InitModule4("libcsamfile", __pyx_methods, 0, 0, PYTHON_API_VERSION); Py_XINCREF(__pyx_m); jpayne@69: if (unlikely(!__pyx_m)) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: #elif CYTHON_USE_MODULE_STATE jpayne@69: __pyx_t_1 = PyModule_Create(&__pyx_moduledef); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: { jpayne@69: int add_module_result = PyState_AddModule(__pyx_t_1, &__pyx_moduledef); jpayne@69: __pyx_t_1 = 0; /* transfer ownership from __pyx_t_1 to "libcsamfile" pseudovariable */ jpayne@69: if (unlikely((add_module_result < 0))) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: pystate_addmodule_run = 1; jpayne@69: } jpayne@69: #else jpayne@69: __pyx_m = PyModule_Create(&__pyx_moduledef); jpayne@69: if (unlikely(!__pyx_m)) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: #endif jpayne@69: #endif jpayne@69: CYTHON_UNUSED_VAR(__pyx_t_1); jpayne@69: __pyx_d = PyModule_GetDict(__pyx_m); if (unlikely(!__pyx_d)) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: Py_INCREF(__pyx_d); jpayne@69: __pyx_b = __Pyx_PyImport_AddModuleRef(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_b)) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: __pyx_cython_runtime = __Pyx_PyImport_AddModuleRef((const char *) "cython_runtime"); if (unlikely(!__pyx_cython_runtime)) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: if (PyObject_SetAttrString(__pyx_m, "__builtins__", __pyx_b) < 0) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: #if CYTHON_REFNANNY jpayne@69: __Pyx_RefNanny = __Pyx_RefNannyImportAPI("refnanny"); jpayne@69: if (!__Pyx_RefNanny) { jpayne@69: PyErr_Clear(); jpayne@69: __Pyx_RefNanny = __Pyx_RefNannyImportAPI("Cython.Runtime.refnanny"); jpayne@69: if (!__Pyx_RefNanny) jpayne@69: Py_FatalError("failed to import 'refnanny' module"); jpayne@69: } jpayne@69: #endif jpayne@69: __Pyx_RefNannySetupContext("__Pyx_PyMODINIT_FUNC PyInit_libcsamfile(void)", 0); jpayne@69: if (__Pyx_check_binary_version(__PYX_LIMITED_VERSION_HEX, __Pyx_get_runtime_version(), CYTHON_COMPILING_IN_LIMITED_API) < 0) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: #ifdef __Pxy_PyFrame_Initialize_Offsets jpayne@69: __Pxy_PyFrame_Initialize_Offsets(); jpayne@69: #endif jpayne@69: __pyx_empty_tuple = PyTuple_New(0); if (unlikely(!__pyx_empty_tuple)) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: __pyx_empty_bytes = PyBytes_FromStringAndSize("", 0); if (unlikely(!__pyx_empty_bytes)) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: __pyx_empty_unicode = PyUnicode_FromStringAndSize("", 0); if (unlikely(!__pyx_empty_unicode)) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: #ifdef __Pyx_CyFunction_USED jpayne@69: if (__pyx_CyFunction_init(__pyx_m) < 0) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: #endif jpayne@69: #ifdef __Pyx_FusedFunction_USED jpayne@69: if (__pyx_FusedFunction_init(__pyx_m) < 0) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: #endif jpayne@69: #ifdef __Pyx_Coroutine_USED jpayne@69: if (__pyx_Coroutine_init(__pyx_m) < 0) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: #endif jpayne@69: #ifdef __Pyx_Generator_USED jpayne@69: if (__pyx_Generator_init(__pyx_m) < 0) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: #endif jpayne@69: #ifdef __Pyx_AsyncGen_USED jpayne@69: if (__pyx_AsyncGen_init(__pyx_m) < 0) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: #endif jpayne@69: #ifdef __Pyx_StopAsyncIteration_USED jpayne@69: if (__pyx_StopAsyncIteration_init(__pyx_m) < 0) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: #endif jpayne@69: /*--- Library function declarations ---*/ jpayne@69: /*--- Threads initialization code ---*/ jpayne@69: #if defined(WITH_THREAD) && PY_VERSION_HEX < 0x030700F0 && defined(__PYX_FORCE_INIT_THREADS) && __PYX_FORCE_INIT_THREADS jpayne@69: PyEval_InitThreads(); jpayne@69: #endif jpayne@69: /*--- Initialize various global constants etc. ---*/ jpayne@69: if (__Pyx_InitConstants() < 0) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: stringtab_initialized = 1; jpayne@69: if (__Pyx_InitGlobals() < 0) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: #if PY_MAJOR_VERSION < 3 && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT) jpayne@69: if (__Pyx_init_sys_getdefaultencoding_params() < 0) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: #endif jpayne@69: if (__pyx_module_is_main_pysam__libcsamfile) { jpayne@69: if (PyObject_SetAttr(__pyx_m, __pyx_n_s_name, __pyx_n_s_main) < 0) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: } jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: { jpayne@69: PyObject *modules = PyImport_GetModuleDict(); if (unlikely(!modules)) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: if (!PyDict_GetItemString(modules, "pysam.libcsamfile")) { jpayne@69: if (unlikely((PyDict_SetItemString(modules, "pysam.libcsamfile", __pyx_m) < 0))) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: } jpayne@69: } jpayne@69: #endif jpayne@69: /*--- Builtin init code ---*/ jpayne@69: if (__Pyx_InitCachedBuiltins() < 0) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: /*--- Constants init code ---*/ jpayne@69: if (__Pyx_InitCachedConstants() < 0) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: /*--- Global type/function init code ---*/ jpayne@69: (void)__Pyx_modinit_global_init_code(); jpayne@69: (void)__Pyx_modinit_variable_export_code(); jpayne@69: (void)__Pyx_modinit_function_export_code(); jpayne@69: if (unlikely((__Pyx_modinit_type_init_code() < 0))) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: if (unlikely((__Pyx_modinit_type_import_code() < 0))) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: (void)__Pyx_modinit_variable_import_code(); jpayne@69: (void)__Pyx_modinit_function_import_code(); jpayne@69: /*--- Execution code ---*/ jpayne@69: #if defined(__Pyx_Generator_USED) || defined(__Pyx_Coroutine_USED) jpayne@69: if (__Pyx_patch_abc() < 0) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: #endif jpayne@69: __Pyx_TraceCall("__Pyx_PyMODINIT_FUNC PyInit_libcsamfile(void)", __pyx_f[3], 1, 0, __PYX_ERR(3, 1, __pyx_L1_error)); jpayne@69: jpayne@69: /* "pysam/libcsamfile.pyx":4 jpayne@69: * # cython: profile=True jpayne@69: * # adds doc-strings for sphinx jpayne@69: * import tempfile # <<<<<<<<<<<<<< jpayne@69: * import os jpayne@69: * import sys jpayne@69: */ jpayne@69: __pyx_t_2 = __Pyx_ImportDottedModule(__pyx_n_s_tempfile, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(3, 4, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: if (PyDict_SetItem(__pyx_d, __pyx_n_s_tempfile, __pyx_t_2) < 0) __PYX_ERR(3, 4, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: jpayne@69: /* "pysam/libcsamfile.pyx":5 jpayne@69: * # adds doc-strings for sphinx jpayne@69: * import tempfile jpayne@69: * import os # <<<<<<<<<<<<<< jpayne@69: * import sys jpayne@69: * import types jpayne@69: */ jpayne@69: __pyx_t_2 = __Pyx_ImportDottedModule(__pyx_n_s_os, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(3, 5, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: if (PyDict_SetItem(__pyx_d, __pyx_n_s_os, __pyx_t_2) < 0) __PYX_ERR(3, 5, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: jpayne@69: /* "pysam/libcsamfile.pyx":6 jpayne@69: * import tempfile jpayne@69: * import os jpayne@69: * import sys # <<<<<<<<<<<<<< jpayne@69: * import types jpayne@69: * import itertools jpayne@69: */ jpayne@69: __pyx_t_2 = __Pyx_ImportDottedModule(__pyx_n_s_sys, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(3, 6, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: if (PyDict_SetItem(__pyx_d, __pyx_n_s_sys, __pyx_t_2) < 0) __PYX_ERR(3, 6, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: jpayne@69: /* "pysam/libcsamfile.pyx":7 jpayne@69: * import os jpayne@69: * import sys jpayne@69: * import types # <<<<<<<<<<<<<< jpayne@69: * import itertools jpayne@69: * import struct jpayne@69: */ jpayne@69: __pyx_t_2 = __Pyx_ImportDottedModule(__pyx_n_s_types, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(3, 7, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: if (PyDict_SetItem(__pyx_d, __pyx_n_s_types, __pyx_t_2) < 0) __PYX_ERR(3, 7, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: jpayne@69: /* "pysam/libcsamfile.pyx":8 jpayne@69: * import sys jpayne@69: * import types jpayne@69: * import itertools # <<<<<<<<<<<<<< jpayne@69: * import struct jpayne@69: * import ctypes jpayne@69: */ jpayne@69: __pyx_t_2 = __Pyx_ImportDottedModule(__pyx_n_s_itertools, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(3, 8, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: if (PyDict_SetItem(__pyx_d, __pyx_n_s_itertools, __pyx_t_2) < 0) __PYX_ERR(3, 8, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: jpayne@69: /* "pysam/libcsamfile.pyx":9 jpayne@69: * import types jpayne@69: * import itertools jpayne@69: * import struct # <<<<<<<<<<<<<< jpayne@69: * import ctypes jpayne@69: * import collections jpayne@69: */ jpayne@69: __pyx_t_2 = __Pyx_ImportDottedModule(__pyx_n_s_struct, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(3, 9, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: if (PyDict_SetItem(__pyx_d, __pyx_n_s_struct, __pyx_t_2) < 0) __PYX_ERR(3, 9, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: jpayne@69: /* "pysam/libcsamfile.pyx":10 jpayne@69: * import itertools jpayne@69: * import struct jpayne@69: * import ctypes # <<<<<<<<<<<<<< jpayne@69: * import collections jpayne@69: * import re jpayne@69: */ jpayne@69: __pyx_t_2 = __Pyx_ImportDottedModule(__pyx_n_s_ctypes, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(3, 10, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: if (PyDict_SetItem(__pyx_d, __pyx_n_s_ctypes, __pyx_t_2) < 0) __PYX_ERR(3, 10, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: jpayne@69: /* "pysam/libcsamfile.pyx":11 jpayne@69: * import struct jpayne@69: * import ctypes jpayne@69: * import collections # <<<<<<<<<<<<<< jpayne@69: * import re jpayne@69: * import platform jpayne@69: */ jpayne@69: __pyx_t_2 = __Pyx_ImportDottedModule(__pyx_n_s_collections, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(3, 11, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: if (PyDict_SetItem(__pyx_d, __pyx_n_s_collections, __pyx_t_2) < 0) __PYX_ERR(3, 11, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: jpayne@69: /* "pysam/libcsamfile.pyx":12 jpayne@69: * import ctypes jpayne@69: * import collections jpayne@69: * import re # <<<<<<<<<<<<<< jpayne@69: * import platform jpayne@69: * import warnings jpayne@69: */ jpayne@69: __pyx_t_2 = __Pyx_ImportDottedModule(__pyx_n_s_re, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(3, 12, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: if (PyDict_SetItem(__pyx_d, __pyx_n_s_re, __pyx_t_2) < 0) __PYX_ERR(3, 12, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: jpayne@69: /* "pysam/libcsamfile.pyx":13 jpayne@69: * import collections jpayne@69: * import re jpayne@69: * import platform # <<<<<<<<<<<<<< jpayne@69: * import warnings jpayne@69: * from cpython cimport PyErr_SetString, \ jpayne@69: */ jpayne@69: __pyx_t_2 = __Pyx_ImportDottedModule(__pyx_n_s_platform, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(3, 13, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: if (PyDict_SetItem(__pyx_d, __pyx_n_s_platform, __pyx_t_2) < 0) __PYX_ERR(3, 13, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: jpayne@69: /* "pysam/libcsamfile.pyx":14 jpayne@69: * import re jpayne@69: * import platform jpayne@69: * import warnings # <<<<<<<<<<<<<< jpayne@69: * from cpython cimport PyErr_SetString, \ jpayne@69: * PyBytes_Check, \ jpayne@69: */ jpayne@69: __pyx_t_2 = __Pyx_ImportDottedModule(__pyx_n_s_warnings, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(3, 14, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: if (PyDict_SetItem(__pyx_d, __pyx_n_s_warnings, __pyx_t_2) < 0) __PYX_ERR(3, 14, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: jpayne@69: /* "(tree fragment)":1 jpayne@69: * def __reduce_cython__(self): # <<<<<<<<<<<<<< jpayne@69: * raise TypeError, "self.b,self.htsfile,self.index cannot be converted to a Python object for pickling" jpayne@69: * def __setstate_cython__(self, __pyx_state): jpayne@69: */ jpayne@69: __pyx_t_2 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_11libcsamfile_7Samfile_1__reduce_cython__, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_Samfile___reduce_cython, NULL, __pyx_n_s_pysam_libcsamfile, __pyx_d, ((PyObject *)__pyx_codeobj_)); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: if (PyDict_SetItem(__pyx_d, __pyx_n_s_reduce_cython, __pyx_t_2) < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: jpayne@69: /* "(tree fragment)":3 jpayne@69: * def __reduce_cython__(self): jpayne@69: * raise TypeError, "self.b,self.htsfile,self.index cannot be converted to a Python object for pickling" jpayne@69: * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<< jpayne@69: * raise TypeError, "self.b,self.htsfile,self.index cannot be converted to a Python object for pickling" jpayne@69: */ jpayne@69: __pyx_t_2 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_11libcsamfile_7Samfile_3__setstate_cython__, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_Samfile___setstate_cython, NULL, __pyx_n_s_pysam_libcsamfile, __pyx_d, ((PyObject *)__pyx_codeobj__2)); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 3, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: if (PyDict_SetItem(__pyx_d, __pyx_n_s_setstate_cython, __pyx_t_2) < 0) __PYX_ERR(0, 3, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: jpayne@69: /* "(tree fragment)":1 jpayne@69: * def __reduce_cython__(self): # <<<<<<<<<<<<<< jpayne@69: * raise TypeError, "self._delegate cannot be converted to a Python object for pickling" jpayne@69: * def __setstate_cython__(self, __pyx_state): jpayne@69: */ jpayne@69: __pyx_t_2 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_11libcsamfile_11AlignedRead_1__reduce_cython__, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_AlignedRead___reduce_cython, NULL, __pyx_n_s_pysam_libcsamfile, __pyx_d, ((PyObject *)__pyx_codeobj__3)); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: if (PyDict_SetItem(__pyx_d, __pyx_n_s_reduce_cython, __pyx_t_2) < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: jpayne@69: /* "(tree fragment)":3 jpayne@69: * def __reduce_cython__(self): jpayne@69: * raise TypeError, "self._delegate cannot be converted to a Python object for pickling" jpayne@69: * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<< jpayne@69: * raise TypeError, "self._delegate cannot be converted to a Python object for pickling" jpayne@69: */ jpayne@69: __pyx_t_2 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_11libcsamfile_11AlignedRead_3__setstate_cython__, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_AlignedRead___setstate_cython, NULL, __pyx_n_s_pysam_libcsamfile, __pyx_d, ((PyObject *)__pyx_codeobj__4)); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 3, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: if (PyDict_SetItem(__pyx_d, __pyx_n_s_setstate_cython, __pyx_t_2) < 0) __PYX_ERR(0, 3, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: jpayne@69: /* "pysam/libcsamfile.pyx":39 jpayne@69: * jpayne@69: * jpayne@69: * __all__ = ['Samfile', 'AlignedRead'] # <<<<<<<<<<<<<< jpayne@69: * jpayne@69: * jpayne@69: */ jpayne@69: __pyx_t_2 = PyList_New(2); if (unlikely(!__pyx_t_2)) __PYX_ERR(3, 39, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: __Pyx_INCREF(__pyx_n_u_Samfile); jpayne@69: __Pyx_GIVEREF(__pyx_n_u_Samfile); jpayne@69: if (__Pyx_PyList_SET_ITEM(__pyx_t_2, 0, __pyx_n_u_Samfile)) __PYX_ERR(3, 39, __pyx_L1_error); jpayne@69: __Pyx_INCREF(__pyx_n_u_AlignedRead); jpayne@69: __Pyx_GIVEREF(__pyx_n_u_AlignedRead); jpayne@69: if (__Pyx_PyList_SET_ITEM(__pyx_t_2, 1, __pyx_n_u_AlignedRead)) __PYX_ERR(3, 39, __pyx_L1_error); jpayne@69: if (PyDict_SetItem(__pyx_d, __pyx_n_s_all, __pyx_t_2) < 0) __PYX_ERR(3, 39, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: jpayne@69: /* "pysam/libcsamfile.pyx":1 jpayne@69: * # cython: embedsignature=True # <<<<<<<<<<<<<< jpayne@69: * # cython: profile=True jpayne@69: * # adds doc-strings for sphinx jpayne@69: */ jpayne@69: __pyx_t_2 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_2)) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: __Pyx_GOTREF(__pyx_t_2); jpayne@69: if (PyDict_SetItem(__pyx_d, __pyx_n_s_test, __pyx_t_2) < 0) __PYX_ERR(3, 1, __pyx_L1_error) jpayne@69: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@69: __Pyx_TraceReturn(Py_None, 0); jpayne@69: jpayne@69: /*--- Wrapped vars code ---*/ jpayne@69: jpayne@69: goto __pyx_L0; jpayne@69: __pyx_L1_error:; jpayne@69: __Pyx_XDECREF(__pyx_t_2); jpayne@69: if (__pyx_m) { jpayne@69: if (__pyx_d && stringtab_initialized) { jpayne@69: __Pyx_AddTraceback("init pysam.libcsamfile", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@69: } jpayne@69: #if !CYTHON_USE_MODULE_STATE jpayne@69: Py_CLEAR(__pyx_m); jpayne@69: #else jpayne@69: Py_DECREF(__pyx_m); jpayne@69: if (pystate_addmodule_run) { jpayne@69: PyObject *tp, *value, *tb; jpayne@69: PyErr_Fetch(&tp, &value, &tb); jpayne@69: PyState_RemoveModule(&__pyx_moduledef); jpayne@69: PyErr_Restore(tp, value, tb); jpayne@69: } jpayne@69: #endif jpayne@69: } else if (!PyErr_Occurred()) { jpayne@69: PyErr_SetString(PyExc_ImportError, "init pysam.libcsamfile"); jpayne@69: } jpayne@69: __pyx_L0:; jpayne@69: __Pyx_RefNannyFinishContext(); jpayne@69: #if CYTHON_PEP489_MULTI_PHASE_INIT jpayne@69: return (__pyx_m != NULL) ? 0 : -1; jpayne@69: #elif PY_MAJOR_VERSION >= 3 jpayne@69: return __pyx_m; jpayne@69: #else jpayne@69: return; jpayne@69: #endif jpayne@69: } jpayne@69: /* #### Code section: cleanup_globals ### */ jpayne@69: /* #### Code section: cleanup_module ### */ jpayne@69: /* #### Code section: main_method ### */ jpayne@69: /* #### Code section: utility_code_pragmas ### */ jpayne@69: #ifdef _MSC_VER jpayne@69: #pragma warning( push ) jpayne@69: /* Warning 4127: conditional expression is constant jpayne@69: * Cython uses constant conditional expressions to allow in inline functions to be optimized at jpayne@69: * compile-time, so this warning is not useful jpayne@69: */ jpayne@69: #pragma warning( disable : 4127 ) jpayne@69: #endif jpayne@69: jpayne@69: jpayne@69: jpayne@69: /* #### Code section: utility_code_def ### */ jpayne@69: jpayne@69: /* --- Runtime support code --- */ jpayne@69: /* Refnanny */ jpayne@69: #if CYTHON_REFNANNY jpayne@69: static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) { jpayne@69: PyObject *m = NULL, *p = NULL; jpayne@69: void *r = NULL; jpayne@69: m = PyImport_ImportModule(modname); jpayne@69: if (!m) goto end; jpayne@69: p = PyObject_GetAttrString(m, "RefNannyAPI"); jpayne@69: if (!p) goto end; jpayne@69: r = PyLong_AsVoidPtr(p); jpayne@69: end: jpayne@69: Py_XDECREF(p); jpayne@69: Py_XDECREF(m); jpayne@69: return (__Pyx_RefNannyAPIStruct *)r; jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* PyErrExceptionMatches */ jpayne@69: #if CYTHON_FAST_THREAD_STATE jpayne@69: static int __Pyx_PyErr_ExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) { jpayne@69: Py_ssize_t i, n; jpayne@69: n = PyTuple_GET_SIZE(tuple); jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: for (i=0; i= 0x030C00A6 jpayne@69: PyObject *current_exception = tstate->current_exception; jpayne@69: if (unlikely(!current_exception)) return 0; jpayne@69: exc_type = (PyObject*) Py_TYPE(current_exception); jpayne@69: if (exc_type == err) return 1; jpayne@69: #else jpayne@69: exc_type = tstate->curexc_type; jpayne@69: if (exc_type == err) return 1; jpayne@69: if (unlikely(!exc_type)) return 0; jpayne@69: #endif jpayne@69: #if CYTHON_AVOID_BORROWED_REFS jpayne@69: Py_INCREF(exc_type); jpayne@69: #endif jpayne@69: if (unlikely(PyTuple_Check(err))) { jpayne@69: result = __Pyx_PyErr_ExceptionMatchesTuple(exc_type, err); jpayne@69: } else { jpayne@69: result = __Pyx_PyErr_GivenExceptionMatches(exc_type, err); jpayne@69: } jpayne@69: #if CYTHON_AVOID_BORROWED_REFS jpayne@69: Py_DECREF(exc_type); jpayne@69: #endif jpayne@69: return result; jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* PyErrFetchRestore */ jpayne@69: #if CYTHON_FAST_THREAD_STATE jpayne@69: static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { jpayne@69: #if PY_VERSION_HEX >= 0x030C00A6 jpayne@69: PyObject *tmp_value; jpayne@69: assert(type == NULL || (value != NULL && type == (PyObject*) Py_TYPE(value))); jpayne@69: if (value) { jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON jpayne@69: if (unlikely(((PyBaseExceptionObject*) value)->traceback != tb)) jpayne@69: #endif jpayne@69: PyException_SetTraceback(value, tb); jpayne@69: } jpayne@69: tmp_value = tstate->current_exception; jpayne@69: tstate->current_exception = value; jpayne@69: Py_XDECREF(tmp_value); jpayne@69: Py_XDECREF(type); jpayne@69: Py_XDECREF(tb); jpayne@69: #else jpayne@69: PyObject *tmp_type, *tmp_value, *tmp_tb; jpayne@69: tmp_type = tstate->curexc_type; jpayne@69: tmp_value = tstate->curexc_value; jpayne@69: tmp_tb = tstate->curexc_traceback; jpayne@69: tstate->curexc_type = type; jpayne@69: tstate->curexc_value = value; jpayne@69: tstate->curexc_traceback = tb; jpayne@69: Py_XDECREF(tmp_type); jpayne@69: Py_XDECREF(tmp_value); jpayne@69: Py_XDECREF(tmp_tb); jpayne@69: #endif jpayne@69: } jpayne@69: static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { jpayne@69: #if PY_VERSION_HEX >= 0x030C00A6 jpayne@69: PyObject* exc_value; jpayne@69: exc_value = tstate->current_exception; jpayne@69: tstate->current_exception = 0; jpayne@69: *value = exc_value; jpayne@69: *type = NULL; jpayne@69: *tb = NULL; jpayne@69: if (exc_value) { jpayne@69: *type = (PyObject*) Py_TYPE(exc_value); jpayne@69: Py_INCREF(*type); jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON jpayne@69: *tb = ((PyBaseExceptionObject*) exc_value)->traceback; jpayne@69: Py_XINCREF(*tb); jpayne@69: #else jpayne@69: *tb = PyException_GetTraceback(exc_value); jpayne@69: #endif jpayne@69: } jpayne@69: #else jpayne@69: *type = tstate->curexc_type; jpayne@69: *value = tstate->curexc_value; jpayne@69: *tb = tstate->curexc_traceback; jpayne@69: tstate->curexc_type = 0; jpayne@69: tstate->curexc_value = 0; jpayne@69: tstate->curexc_traceback = 0; jpayne@69: #endif jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* PyObjectGetAttrStr */ jpayne@69: #if CYTHON_USE_TYPE_SLOTS jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) { jpayne@69: PyTypeObject* tp = Py_TYPE(obj); jpayne@69: if (likely(tp->tp_getattro)) jpayne@69: return tp->tp_getattro(obj, attr_name); jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: if (likely(tp->tp_getattr)) jpayne@69: return tp->tp_getattr(obj, PyString_AS_STRING(attr_name)); jpayne@69: #endif jpayne@69: return PyObject_GetAttr(obj, attr_name); jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* PyObjectGetAttrStrNoError */ jpayne@69: #if __PYX_LIMITED_VERSION_HEX < 0x030d00A1 jpayne@69: static void __Pyx_PyObject_GetAttrStr_ClearAttributeError(void) { jpayne@69: __Pyx_PyThreadState_declare jpayne@69: __Pyx_PyThreadState_assign jpayne@69: if (likely(__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError))) jpayne@69: __Pyx_PyErr_Clear(); jpayne@69: } jpayne@69: #endif jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name) { jpayne@69: PyObject *result; jpayne@69: #if __PYX_LIMITED_VERSION_HEX >= 0x030d00A1 jpayne@69: (void) PyObject_GetOptionalAttr(obj, attr_name, &result); jpayne@69: return result; jpayne@69: #else jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_TYPE_SLOTS && PY_VERSION_HEX >= 0x030700B1 jpayne@69: PyTypeObject* tp = Py_TYPE(obj); jpayne@69: if (likely(tp->tp_getattro == PyObject_GenericGetAttr)) { jpayne@69: return _PyObject_GenericGetAttrWithDict(obj, attr_name, NULL, 1); jpayne@69: } jpayne@69: #endif jpayne@69: result = __Pyx_PyObject_GetAttrStr(obj, attr_name); jpayne@69: if (unlikely(!result)) { jpayne@69: __Pyx_PyObject_GetAttrStr_ClearAttributeError(); jpayne@69: } jpayne@69: return result; jpayne@69: #endif jpayne@69: } jpayne@69: jpayne@69: /* GetBuiltinName */ jpayne@69: static PyObject *__Pyx_GetBuiltinName(PyObject *name) { jpayne@69: PyObject* result = __Pyx_PyObject_GetAttrStrNoError(__pyx_b, name); jpayne@69: if (unlikely(!result) && !PyErr_Occurred()) { jpayne@69: PyErr_Format(PyExc_NameError, jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: "name '%U' is not defined", name); jpayne@69: #else jpayne@69: "name '%.200s' is not defined", PyString_AS_STRING(name)); jpayne@69: #endif jpayne@69: } jpayne@69: return result; jpayne@69: } jpayne@69: jpayne@69: /* TupleAndListFromArray */ jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON jpayne@69: static CYTHON_INLINE void __Pyx_copy_object_array(PyObject *const *CYTHON_RESTRICT src, PyObject** CYTHON_RESTRICT dest, Py_ssize_t length) { jpayne@69: PyObject *v; jpayne@69: Py_ssize_t i; jpayne@69: for (i = 0; i < length; i++) { jpayne@69: v = dest[i] = src[i]; jpayne@69: Py_INCREF(v); jpayne@69: } jpayne@69: } jpayne@69: static CYTHON_INLINE PyObject * jpayne@69: __Pyx_PyTuple_FromArray(PyObject *const *src, Py_ssize_t n) jpayne@69: { jpayne@69: PyObject *res; jpayne@69: if (n <= 0) { jpayne@69: Py_INCREF(__pyx_empty_tuple); jpayne@69: return __pyx_empty_tuple; jpayne@69: } jpayne@69: res = PyTuple_New(n); jpayne@69: if (unlikely(res == NULL)) return NULL; jpayne@69: __Pyx_copy_object_array(src, ((PyTupleObject*)res)->ob_item, n); jpayne@69: return res; jpayne@69: } jpayne@69: static CYTHON_INLINE PyObject * jpayne@69: __Pyx_PyList_FromArray(PyObject *const *src, Py_ssize_t n) jpayne@69: { jpayne@69: PyObject *res; jpayne@69: if (n <= 0) { jpayne@69: return PyList_New(0); jpayne@69: } jpayne@69: res = PyList_New(n); jpayne@69: if (unlikely(res == NULL)) return NULL; jpayne@69: __Pyx_copy_object_array(src, ((PyListObject*)res)->ob_item, n); jpayne@69: return res; jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* BytesEquals */ jpayne@69: static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) { jpayne@69: #if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API jpayne@69: return PyObject_RichCompareBool(s1, s2, equals); jpayne@69: #else jpayne@69: if (s1 == s2) { jpayne@69: return (equals == Py_EQ); jpayne@69: } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) { jpayne@69: const char *ps1, *ps2; jpayne@69: Py_ssize_t length = PyBytes_GET_SIZE(s1); jpayne@69: if (length != PyBytes_GET_SIZE(s2)) jpayne@69: return (equals == Py_NE); jpayne@69: ps1 = PyBytes_AS_STRING(s1); jpayne@69: ps2 = PyBytes_AS_STRING(s2); jpayne@69: if (ps1[0] != ps2[0]) { jpayne@69: return (equals == Py_NE); jpayne@69: } else if (length == 1) { jpayne@69: return (equals == Py_EQ); jpayne@69: } else { jpayne@69: int result; jpayne@69: #if CYTHON_USE_UNICODE_INTERNALS && (PY_VERSION_HEX < 0x030B0000) jpayne@69: Py_hash_t hash1, hash2; jpayne@69: hash1 = ((PyBytesObject*)s1)->ob_shash; jpayne@69: hash2 = ((PyBytesObject*)s2)->ob_shash; jpayne@69: if (hash1 != hash2 && hash1 != -1 && hash2 != -1) { jpayne@69: return (equals == Py_NE); jpayne@69: } jpayne@69: #endif jpayne@69: result = memcmp(ps1, ps2, (size_t)length); jpayne@69: return (equals == Py_EQ) ? (result == 0) : (result != 0); jpayne@69: } jpayne@69: } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) { jpayne@69: return (equals == Py_NE); jpayne@69: } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) { jpayne@69: return (equals == Py_NE); jpayne@69: } else { jpayne@69: int result; jpayne@69: PyObject* py_result = PyObject_RichCompare(s1, s2, equals); jpayne@69: if (!py_result) jpayne@69: return -1; jpayne@69: result = __Pyx_PyObject_IsTrue(py_result); jpayne@69: Py_DECREF(py_result); jpayne@69: return result; jpayne@69: } jpayne@69: #endif jpayne@69: } jpayne@69: jpayne@69: /* UnicodeEquals */ jpayne@69: static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) { jpayne@69: #if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API jpayne@69: return PyObject_RichCompareBool(s1, s2, equals); jpayne@69: #else jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: PyObject* owned_ref = NULL; jpayne@69: #endif jpayne@69: int s1_is_unicode, s2_is_unicode; jpayne@69: if (s1 == s2) { jpayne@69: goto return_eq; jpayne@69: } jpayne@69: s1_is_unicode = PyUnicode_CheckExact(s1); jpayne@69: s2_is_unicode = PyUnicode_CheckExact(s2); jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: if ((s1_is_unicode & (!s2_is_unicode)) && PyString_CheckExact(s2)) { jpayne@69: owned_ref = PyUnicode_FromObject(s2); jpayne@69: if (unlikely(!owned_ref)) jpayne@69: return -1; jpayne@69: s2 = owned_ref; jpayne@69: s2_is_unicode = 1; jpayne@69: } else if ((s2_is_unicode & (!s1_is_unicode)) && PyString_CheckExact(s1)) { jpayne@69: owned_ref = PyUnicode_FromObject(s1); jpayne@69: if (unlikely(!owned_ref)) jpayne@69: return -1; jpayne@69: s1 = owned_ref; jpayne@69: s1_is_unicode = 1; jpayne@69: } else if (((!s2_is_unicode) & (!s1_is_unicode))) { jpayne@69: return __Pyx_PyBytes_Equals(s1, s2, equals); jpayne@69: } jpayne@69: #endif jpayne@69: if (s1_is_unicode & s2_is_unicode) { jpayne@69: Py_ssize_t length; jpayne@69: int kind; jpayne@69: void *data1, *data2; jpayne@69: if (unlikely(__Pyx_PyUnicode_READY(s1) < 0) || unlikely(__Pyx_PyUnicode_READY(s2) < 0)) jpayne@69: return -1; jpayne@69: length = __Pyx_PyUnicode_GET_LENGTH(s1); jpayne@69: if (length != __Pyx_PyUnicode_GET_LENGTH(s2)) { jpayne@69: goto return_ne; jpayne@69: } jpayne@69: #if CYTHON_USE_UNICODE_INTERNALS jpayne@69: { jpayne@69: Py_hash_t hash1, hash2; jpayne@69: #if CYTHON_PEP393_ENABLED jpayne@69: hash1 = ((PyASCIIObject*)s1)->hash; jpayne@69: hash2 = ((PyASCIIObject*)s2)->hash; jpayne@69: #else jpayne@69: hash1 = ((PyUnicodeObject*)s1)->hash; jpayne@69: hash2 = ((PyUnicodeObject*)s2)->hash; jpayne@69: #endif jpayne@69: if (hash1 != hash2 && hash1 != -1 && hash2 != -1) { jpayne@69: goto return_ne; jpayne@69: } jpayne@69: } jpayne@69: #endif jpayne@69: kind = __Pyx_PyUnicode_KIND(s1); jpayne@69: if (kind != __Pyx_PyUnicode_KIND(s2)) { jpayne@69: goto return_ne; jpayne@69: } jpayne@69: data1 = __Pyx_PyUnicode_DATA(s1); jpayne@69: data2 = __Pyx_PyUnicode_DATA(s2); jpayne@69: if (__Pyx_PyUnicode_READ(kind, data1, 0) != __Pyx_PyUnicode_READ(kind, data2, 0)) { jpayne@69: goto return_ne; jpayne@69: } else if (length == 1) { jpayne@69: goto return_eq; jpayne@69: } else { jpayne@69: int result = memcmp(data1, data2, (size_t)(length * kind)); jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: Py_XDECREF(owned_ref); jpayne@69: #endif jpayne@69: return (equals == Py_EQ) ? (result == 0) : (result != 0); jpayne@69: } jpayne@69: } else if ((s1 == Py_None) & s2_is_unicode) { jpayne@69: goto return_ne; jpayne@69: } else if ((s2 == Py_None) & s1_is_unicode) { jpayne@69: goto return_ne; jpayne@69: } else { jpayne@69: int result; jpayne@69: PyObject* py_result = PyObject_RichCompare(s1, s2, equals); jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: Py_XDECREF(owned_ref); jpayne@69: #endif jpayne@69: if (!py_result) jpayne@69: return -1; jpayne@69: result = __Pyx_PyObject_IsTrue(py_result); jpayne@69: Py_DECREF(py_result); jpayne@69: return result; jpayne@69: } jpayne@69: return_eq: jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: Py_XDECREF(owned_ref); jpayne@69: #endif jpayne@69: return (equals == Py_EQ); jpayne@69: return_ne: jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: Py_XDECREF(owned_ref); jpayne@69: #endif jpayne@69: return (equals == Py_NE); jpayne@69: #endif jpayne@69: } jpayne@69: jpayne@69: /* fastcall */ jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: static CYTHON_INLINE PyObject * __Pyx_GetKwValue_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues, PyObject *s) jpayne@69: { jpayne@69: Py_ssize_t i, n = PyTuple_GET_SIZE(kwnames); jpayne@69: for (i = 0; i < n; i++) jpayne@69: { jpayne@69: if (s == PyTuple_GET_ITEM(kwnames, i)) return kwvalues[i]; jpayne@69: } jpayne@69: for (i = 0; i < n; i++) jpayne@69: { jpayne@69: int eq = __Pyx_PyUnicode_Equals(s, PyTuple_GET_ITEM(kwnames, i), Py_EQ); jpayne@69: if (unlikely(eq != 0)) { jpayne@69: if (unlikely(eq < 0)) return NULL; jpayne@69: return kwvalues[i]; jpayne@69: } jpayne@69: } jpayne@69: return NULL; jpayne@69: } jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 jpayne@69: CYTHON_UNUSED static PyObject *__Pyx_KwargsAsDict_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues) { jpayne@69: Py_ssize_t i, nkwargs = PyTuple_GET_SIZE(kwnames); jpayne@69: PyObject *dict; jpayne@69: dict = PyDict_New(); jpayne@69: if (unlikely(!dict)) jpayne@69: return NULL; jpayne@69: for (i=0; if_trace == NULL) { jpayne@69: Py_INCREF(Py_None); jpayne@69: (*frame)->f_trace = Py_None; jpayne@69: } jpayne@69: #if PY_VERSION_HEX < 0x030400B1 jpayne@69: } else { jpayne@69: (*frame)->f_tstate = tstate; jpayne@69: #endif jpayne@69: } jpayne@69: __Pyx_PyFrame_SetLineNumber(*frame, firstlineno); jpayne@69: retval = 1; jpayne@69: __Pyx_EnterTracing(tstate); jpayne@69: __Pyx_ErrFetchInState(tstate, &type, &value, &traceback); jpayne@69: #if CYTHON_TRACE jpayne@69: if (tstate->c_tracefunc) jpayne@69: retval = tstate->c_tracefunc(tstate->c_traceobj, *frame, PyTrace_CALL, NULL) == 0; jpayne@69: if (retval && tstate->c_profilefunc) jpayne@69: #endif jpayne@69: retval = tstate->c_profilefunc(tstate->c_profileobj, *frame, PyTrace_CALL, NULL) == 0; jpayne@69: __Pyx_LeaveTracing(tstate); jpayne@69: if (retval) { jpayne@69: __Pyx_ErrRestoreInState(tstate, type, value, traceback); jpayne@69: return __Pyx_IsTracing(tstate, 0, 0) && retval; jpayne@69: } else { jpayne@69: Py_XDECREF(type); jpayne@69: Py_XDECREF(value); jpayne@69: Py_XDECREF(traceback); jpayne@69: return -1; jpayne@69: } jpayne@69: } jpayne@69: static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno) { jpayne@69: PyCodeObject *py_code = 0; jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: py_code = PyCode_NewEmpty(srcfile, funcname, firstlineno); jpayne@69: if (likely(py_code)) { jpayne@69: py_code->co_flags |= CO_OPTIMIZED | CO_NEWLOCALS; jpayne@69: } jpayne@69: #else jpayne@69: PyObject *py_srcfile = 0; jpayne@69: PyObject *py_funcname = 0; jpayne@69: py_funcname = PyString_FromString(funcname); jpayne@69: if (unlikely(!py_funcname)) goto bad; jpayne@69: py_srcfile = PyString_FromString(srcfile); jpayne@69: if (unlikely(!py_srcfile)) goto bad; jpayne@69: py_code = PyCode_New( jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: CO_OPTIMIZED | CO_NEWLOCALS, jpayne@69: __pyx_empty_bytes, /*PyObject *code,*/ jpayne@69: __pyx_empty_tuple, /*PyObject *consts,*/ jpayne@69: __pyx_empty_tuple, /*PyObject *names,*/ jpayne@69: __pyx_empty_tuple, /*PyObject *varnames,*/ jpayne@69: __pyx_empty_tuple, /*PyObject *freevars,*/ jpayne@69: __pyx_empty_tuple, /*PyObject *cellvars,*/ jpayne@69: py_srcfile, /*PyObject *filename,*/ jpayne@69: py_funcname, /*PyObject *name,*/ jpayne@69: firstlineno, jpayne@69: __pyx_empty_bytes /*PyObject *lnotab*/ jpayne@69: ); jpayne@69: bad: jpayne@69: Py_XDECREF(py_srcfile); jpayne@69: Py_XDECREF(py_funcname); jpayne@69: #endif jpayne@69: return py_code; jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* RaiseException */ jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { jpayne@69: __Pyx_PyThreadState_declare jpayne@69: CYTHON_UNUSED_VAR(cause); jpayne@69: Py_XINCREF(type); jpayne@69: if (!value || value == Py_None) jpayne@69: value = NULL; jpayne@69: else jpayne@69: Py_INCREF(value); jpayne@69: if (!tb || tb == Py_None) jpayne@69: tb = NULL; jpayne@69: else { jpayne@69: Py_INCREF(tb); jpayne@69: if (!PyTraceBack_Check(tb)) { jpayne@69: PyErr_SetString(PyExc_TypeError, jpayne@69: "raise: arg 3 must be a traceback or None"); jpayne@69: goto raise_error; jpayne@69: } jpayne@69: } jpayne@69: if (PyType_Check(type)) { jpayne@69: #if CYTHON_COMPILING_IN_PYPY jpayne@69: if (!value) { jpayne@69: Py_INCREF(Py_None); jpayne@69: value = Py_None; jpayne@69: } jpayne@69: #endif jpayne@69: PyErr_NormalizeException(&type, &value, &tb); jpayne@69: } else { jpayne@69: if (value) { jpayne@69: PyErr_SetString(PyExc_TypeError, jpayne@69: "instance exception may not have a separate value"); jpayne@69: goto raise_error; jpayne@69: } jpayne@69: value = type; jpayne@69: type = (PyObject*) Py_TYPE(type); jpayne@69: Py_INCREF(type); jpayne@69: if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { jpayne@69: PyErr_SetString(PyExc_TypeError, jpayne@69: "raise: exception class must be a subclass of BaseException"); jpayne@69: goto raise_error; jpayne@69: } jpayne@69: } jpayne@69: __Pyx_PyThreadState_assign jpayne@69: __Pyx_ErrRestore(type, value, tb); jpayne@69: return; jpayne@69: raise_error: jpayne@69: Py_XDECREF(value); jpayne@69: Py_XDECREF(type); jpayne@69: Py_XDECREF(tb); jpayne@69: return; jpayne@69: } jpayne@69: #else jpayne@69: static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { jpayne@69: PyObject* owned_instance = NULL; jpayne@69: if (tb == Py_None) { jpayne@69: tb = 0; jpayne@69: } else if (tb && !PyTraceBack_Check(tb)) { jpayne@69: PyErr_SetString(PyExc_TypeError, jpayne@69: "raise: arg 3 must be a traceback or None"); jpayne@69: goto bad; jpayne@69: } jpayne@69: if (value == Py_None) jpayne@69: value = 0; jpayne@69: if (PyExceptionInstance_Check(type)) { jpayne@69: if (value) { jpayne@69: PyErr_SetString(PyExc_TypeError, jpayne@69: "instance exception may not have a separate value"); jpayne@69: goto bad; jpayne@69: } jpayne@69: value = type; jpayne@69: type = (PyObject*) Py_TYPE(value); jpayne@69: } else if (PyExceptionClass_Check(type)) { jpayne@69: PyObject *instance_class = NULL; jpayne@69: if (value && PyExceptionInstance_Check(value)) { jpayne@69: instance_class = (PyObject*) Py_TYPE(value); jpayne@69: if (instance_class != type) { jpayne@69: int is_subclass = PyObject_IsSubclass(instance_class, type); jpayne@69: if (!is_subclass) { jpayne@69: instance_class = NULL; jpayne@69: } else if (unlikely(is_subclass == -1)) { jpayne@69: goto bad; jpayne@69: } else { jpayne@69: type = instance_class; jpayne@69: } jpayne@69: } jpayne@69: } jpayne@69: if (!instance_class) { jpayne@69: PyObject *args; jpayne@69: if (!value) jpayne@69: args = PyTuple_New(0); jpayne@69: else if (PyTuple_Check(value)) { jpayne@69: Py_INCREF(value); jpayne@69: args = value; jpayne@69: } else jpayne@69: args = PyTuple_Pack(1, value); jpayne@69: if (!args) jpayne@69: goto bad; jpayne@69: owned_instance = PyObject_Call(type, args, NULL); jpayne@69: Py_DECREF(args); jpayne@69: if (!owned_instance) jpayne@69: goto bad; jpayne@69: value = owned_instance; jpayne@69: if (!PyExceptionInstance_Check(value)) { jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "calling %R should have returned an instance of " jpayne@69: "BaseException, not %R", jpayne@69: type, Py_TYPE(value)); jpayne@69: goto bad; jpayne@69: } jpayne@69: } jpayne@69: } else { jpayne@69: PyErr_SetString(PyExc_TypeError, jpayne@69: "raise: exception class must be a subclass of BaseException"); jpayne@69: goto bad; jpayne@69: } jpayne@69: if (cause) { jpayne@69: PyObject *fixed_cause; jpayne@69: if (cause == Py_None) { jpayne@69: fixed_cause = NULL; jpayne@69: } else if (PyExceptionClass_Check(cause)) { jpayne@69: fixed_cause = PyObject_CallObject(cause, NULL); jpayne@69: if (fixed_cause == NULL) jpayne@69: goto bad; jpayne@69: } else if (PyExceptionInstance_Check(cause)) { jpayne@69: fixed_cause = cause; jpayne@69: Py_INCREF(fixed_cause); jpayne@69: } else { jpayne@69: PyErr_SetString(PyExc_TypeError, jpayne@69: "exception causes must derive from " jpayne@69: "BaseException"); jpayne@69: goto bad; jpayne@69: } jpayne@69: PyException_SetCause(value, fixed_cause); jpayne@69: } jpayne@69: PyErr_SetObject(type, value); jpayne@69: if (tb) { jpayne@69: #if PY_VERSION_HEX >= 0x030C00A6 jpayne@69: PyException_SetTraceback(value, tb); jpayne@69: #elif CYTHON_FAST_THREAD_STATE jpayne@69: PyThreadState *tstate = __Pyx_PyThreadState_Current; jpayne@69: PyObject* tmp_tb = tstate->curexc_traceback; jpayne@69: if (tb != tmp_tb) { jpayne@69: Py_INCREF(tb); jpayne@69: tstate->curexc_traceback = tb; jpayne@69: Py_XDECREF(tmp_tb); jpayne@69: } jpayne@69: #else jpayne@69: PyObject *tmp_type, *tmp_value, *tmp_tb; jpayne@69: PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb); jpayne@69: Py_INCREF(tb); jpayne@69: PyErr_Restore(tmp_type, tmp_value, tb); jpayne@69: Py_XDECREF(tmp_tb); jpayne@69: #endif jpayne@69: } jpayne@69: bad: jpayne@69: Py_XDECREF(owned_instance); jpayne@69: return; jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* RaiseDoubleKeywords */ jpayne@69: static void __Pyx_RaiseDoubleKeywordsError( jpayne@69: const char* func_name, jpayne@69: PyObject* kw_name) jpayne@69: { jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: "%s() got multiple values for keyword argument '%U'", func_name, kw_name); jpayne@69: #else jpayne@69: "%s() got multiple values for keyword argument '%s'", func_name, jpayne@69: PyString_AsString(kw_name)); jpayne@69: #endif jpayne@69: } jpayne@69: jpayne@69: /* ParseKeywords */ jpayne@69: static int __Pyx_ParseOptionalKeywords( jpayne@69: PyObject *kwds, jpayne@69: PyObject *const *kwvalues, jpayne@69: PyObject **argnames[], jpayne@69: PyObject *kwds2, jpayne@69: PyObject *values[], jpayne@69: Py_ssize_t num_pos_args, jpayne@69: const char* function_name) jpayne@69: { jpayne@69: PyObject *key = 0, *value = 0; jpayne@69: Py_ssize_t pos = 0; jpayne@69: PyObject*** name; jpayne@69: PyObject*** first_kw_arg = argnames + num_pos_args; jpayne@69: int kwds_is_tuple = CYTHON_METH_FASTCALL && likely(PyTuple_Check(kwds)); jpayne@69: while (1) { jpayne@69: Py_XDECREF(key); key = NULL; jpayne@69: Py_XDECREF(value); value = NULL; jpayne@69: if (kwds_is_tuple) { jpayne@69: Py_ssize_t size; jpayne@69: #if CYTHON_ASSUME_SAFE_MACROS jpayne@69: size = PyTuple_GET_SIZE(kwds); jpayne@69: #else jpayne@69: size = PyTuple_Size(kwds); jpayne@69: if (size < 0) goto bad; jpayne@69: #endif jpayne@69: if (pos >= size) break; jpayne@69: #if CYTHON_AVOID_BORROWED_REFS jpayne@69: key = __Pyx_PySequence_ITEM(kwds, pos); jpayne@69: if (!key) goto bad; jpayne@69: #elif CYTHON_ASSUME_SAFE_MACROS jpayne@69: key = PyTuple_GET_ITEM(kwds, pos); jpayne@69: #else jpayne@69: key = PyTuple_GetItem(kwds, pos); jpayne@69: if (!key) goto bad; jpayne@69: #endif jpayne@69: value = kwvalues[pos]; jpayne@69: pos++; jpayne@69: } jpayne@69: else jpayne@69: { jpayne@69: if (!PyDict_Next(kwds, &pos, &key, &value)) break; jpayne@69: #if CYTHON_AVOID_BORROWED_REFS jpayne@69: Py_INCREF(key); jpayne@69: #endif jpayne@69: } jpayne@69: name = first_kw_arg; jpayne@69: while (*name && (**name != key)) name++; jpayne@69: if (*name) { jpayne@69: values[name-argnames] = value; jpayne@69: #if CYTHON_AVOID_BORROWED_REFS jpayne@69: Py_INCREF(value); jpayne@69: Py_DECREF(key); jpayne@69: #endif jpayne@69: key = NULL; jpayne@69: value = NULL; jpayne@69: continue; jpayne@69: } jpayne@69: #if !CYTHON_AVOID_BORROWED_REFS jpayne@69: Py_INCREF(key); jpayne@69: #endif jpayne@69: Py_INCREF(value); jpayne@69: name = first_kw_arg; jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: if (likely(PyString_Check(key))) { jpayne@69: while (*name) { jpayne@69: if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) jpayne@69: && _PyString_Eq(**name, key)) { jpayne@69: values[name-argnames] = value; jpayne@69: #if CYTHON_AVOID_BORROWED_REFS jpayne@69: value = NULL; jpayne@69: #endif jpayne@69: break; jpayne@69: } jpayne@69: name++; jpayne@69: } jpayne@69: if (*name) continue; jpayne@69: else { jpayne@69: PyObject*** argname = argnames; jpayne@69: while (argname != first_kw_arg) { jpayne@69: if ((**argname == key) || ( jpayne@69: (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key)) jpayne@69: && _PyString_Eq(**argname, key))) { jpayne@69: goto arg_passed_twice; jpayne@69: } jpayne@69: argname++; jpayne@69: } jpayne@69: } jpayne@69: } else jpayne@69: #endif jpayne@69: if (likely(PyUnicode_Check(key))) { jpayne@69: while (*name) { jpayne@69: int cmp = ( jpayne@69: #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 jpayne@69: (__Pyx_PyUnicode_GET_LENGTH(**name) != __Pyx_PyUnicode_GET_LENGTH(key)) ? 1 : jpayne@69: #endif jpayne@69: PyUnicode_Compare(**name, key) jpayne@69: ); jpayne@69: if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; jpayne@69: if (cmp == 0) { jpayne@69: values[name-argnames] = value; jpayne@69: #if CYTHON_AVOID_BORROWED_REFS jpayne@69: value = NULL; jpayne@69: #endif jpayne@69: break; jpayne@69: } jpayne@69: name++; jpayne@69: } jpayne@69: if (*name) continue; jpayne@69: else { jpayne@69: PyObject*** argname = argnames; jpayne@69: while (argname != first_kw_arg) { jpayne@69: int cmp = (**argname == key) ? 0 : jpayne@69: #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 jpayne@69: (__Pyx_PyUnicode_GET_LENGTH(**argname) != __Pyx_PyUnicode_GET_LENGTH(key)) ? 1 : jpayne@69: #endif jpayne@69: PyUnicode_Compare(**argname, key); jpayne@69: if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; jpayne@69: if (cmp == 0) goto arg_passed_twice; jpayne@69: argname++; jpayne@69: } jpayne@69: } jpayne@69: } else jpayne@69: goto invalid_keyword_type; jpayne@69: if (kwds2) { jpayne@69: if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; jpayne@69: } else { jpayne@69: goto invalid_keyword; jpayne@69: } jpayne@69: } jpayne@69: Py_XDECREF(key); jpayne@69: Py_XDECREF(value); jpayne@69: return 0; jpayne@69: arg_passed_twice: jpayne@69: __Pyx_RaiseDoubleKeywordsError(function_name, key); jpayne@69: goto bad; jpayne@69: invalid_keyword_type: jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "%.200s() keywords must be strings", function_name); jpayne@69: goto bad; jpayne@69: invalid_keyword: jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "%.200s() got an unexpected keyword argument '%.200s'", jpayne@69: function_name, PyString_AsString(key)); jpayne@69: #else jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "%s() got an unexpected keyword argument '%U'", jpayne@69: function_name, key); jpayne@69: #endif jpayne@69: bad: jpayne@69: Py_XDECREF(key); jpayne@69: Py_XDECREF(value); jpayne@69: return -1; jpayne@69: } jpayne@69: jpayne@69: /* CallNextTpTraverse */ jpayne@69: static int __Pyx_call_next_tp_traverse(PyObject* obj, visitproc v, void *a, traverseproc current_tp_traverse) { jpayne@69: PyTypeObject* type = Py_TYPE(obj); jpayne@69: traverseproc tp_traverse = NULL; jpayne@69: while (type && __Pyx_PyType_GetSlot(type, tp_traverse, traverseproc) != current_tp_traverse) jpayne@69: type = __Pyx_PyType_GetSlot(type, tp_base, PyTypeObject*); jpayne@69: while (type && (tp_traverse = __Pyx_PyType_GetSlot(type, tp_traverse, traverseproc)) == current_tp_traverse) jpayne@69: type = __Pyx_PyType_GetSlot(type, tp_base, PyTypeObject*); jpayne@69: if (type && tp_traverse) jpayne@69: return tp_traverse(obj, v, a); jpayne@69: return 0; jpayne@69: } jpayne@69: jpayne@69: /* CallNextTpClear */ jpayne@69: static void __Pyx_call_next_tp_clear(PyObject* obj, inquiry current_tp_clear) { jpayne@69: PyTypeObject* type = Py_TYPE(obj); jpayne@69: inquiry tp_clear = NULL; jpayne@69: while (type && __Pyx_PyType_GetSlot(type, tp_clear, inquiry) != current_tp_clear) jpayne@69: type = __Pyx_PyType_GetSlot(type, tp_base, PyTypeObject*); jpayne@69: while (type && (tp_clear = __Pyx_PyType_GetSlot(type, tp_clear, inquiry)) == current_tp_clear) jpayne@69: type = __Pyx_PyType_GetSlot(type, tp_base, PyTypeObject*); jpayne@69: if (type && tp_clear) jpayne@69: tp_clear(obj); jpayne@69: } jpayne@69: jpayne@69: /* TypeImport */ jpayne@69: #ifndef __PYX_HAVE_RT_ImportType_3_0_11 jpayne@69: #define __PYX_HAVE_RT_ImportType_3_0_11 jpayne@69: static PyTypeObject *__Pyx_ImportType_3_0_11(PyObject *module, const char *module_name, const char *class_name, jpayne@69: size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_0_11 check_size) jpayne@69: { jpayne@69: PyObject *result = 0; jpayne@69: char warning[200]; jpayne@69: Py_ssize_t basicsize; jpayne@69: Py_ssize_t itemsize; jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: PyObject *py_basicsize; jpayne@69: PyObject *py_itemsize; jpayne@69: #endif jpayne@69: result = PyObject_GetAttrString(module, class_name); jpayne@69: if (!result) jpayne@69: goto bad; jpayne@69: if (!PyType_Check(result)) { jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "%.200s.%.200s is not a type object", jpayne@69: module_name, class_name); jpayne@69: goto bad; jpayne@69: } jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: basicsize = ((PyTypeObject *)result)->tp_basicsize; jpayne@69: itemsize = ((PyTypeObject *)result)->tp_itemsize; jpayne@69: #else jpayne@69: py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); jpayne@69: if (!py_basicsize) jpayne@69: goto bad; jpayne@69: basicsize = PyLong_AsSsize_t(py_basicsize); jpayne@69: Py_DECREF(py_basicsize); jpayne@69: py_basicsize = 0; jpayne@69: if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) jpayne@69: goto bad; jpayne@69: py_itemsize = PyObject_GetAttrString(result, "__itemsize__"); jpayne@69: if (!py_itemsize) jpayne@69: goto bad; jpayne@69: itemsize = PyLong_AsSsize_t(py_itemsize); jpayne@69: Py_DECREF(py_itemsize); jpayne@69: py_itemsize = 0; jpayne@69: if (itemsize == (Py_ssize_t)-1 && PyErr_Occurred()) jpayne@69: goto bad; jpayne@69: #endif jpayne@69: if (itemsize) { jpayne@69: if (size % alignment) { jpayne@69: alignment = size % alignment; jpayne@69: } jpayne@69: if (itemsize < (Py_ssize_t)alignment) jpayne@69: itemsize = (Py_ssize_t)alignment; jpayne@69: } jpayne@69: if ((size_t)(basicsize + itemsize) < size) { jpayne@69: PyErr_Format(PyExc_ValueError, jpayne@69: "%.200s.%.200s size changed, may indicate binary incompatibility. " jpayne@69: "Expected %zd from C header, got %zd from PyObject", jpayne@69: module_name, class_name, size, basicsize+itemsize); jpayne@69: goto bad; jpayne@69: } jpayne@69: if (check_size == __Pyx_ImportType_CheckSize_Error_3_0_11 && jpayne@69: ((size_t)basicsize > size || (size_t)(basicsize + itemsize) < size)) { jpayne@69: PyErr_Format(PyExc_ValueError, jpayne@69: "%.200s.%.200s size changed, may indicate binary incompatibility. " jpayne@69: "Expected %zd from C header, got %zd-%zd from PyObject", jpayne@69: module_name, class_name, size, basicsize, basicsize+itemsize); jpayne@69: goto bad; jpayne@69: } jpayne@69: else if (check_size == __Pyx_ImportType_CheckSize_Warn_3_0_11 && (size_t)basicsize > size) { jpayne@69: PyOS_snprintf(warning, sizeof(warning), jpayne@69: "%s.%s size changed, may indicate binary incompatibility. " jpayne@69: "Expected %zd from C header, got %zd from PyObject", jpayne@69: module_name, class_name, size, basicsize); jpayne@69: if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; jpayne@69: } jpayne@69: return (PyTypeObject *)result; jpayne@69: bad: jpayne@69: Py_XDECREF(result); jpayne@69: return NULL; jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* GetVTable */ jpayne@69: static void* __Pyx_GetVtable(PyTypeObject *type) { jpayne@69: void* ptr; jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: PyObject *ob = PyObject_GetAttr((PyObject *)type, __pyx_n_s_pyx_vtable); jpayne@69: #else jpayne@69: PyObject *ob = PyObject_GetItem(type->tp_dict, __pyx_n_s_pyx_vtable); jpayne@69: #endif jpayne@69: if (!ob) jpayne@69: goto bad; jpayne@69: ptr = PyCapsule_GetPointer(ob, 0); jpayne@69: if (!ptr && !PyErr_Occurred()) jpayne@69: PyErr_SetString(PyExc_RuntimeError, "invalid vtable found for imported type"); jpayne@69: Py_DECREF(ob); jpayne@69: return ptr; jpayne@69: bad: jpayne@69: Py_XDECREF(ob); jpayne@69: return NULL; jpayne@69: } jpayne@69: jpayne@69: /* FixUpExtensionType */ jpayne@69: #if CYTHON_USE_TYPE_SPECS jpayne@69: static int __Pyx_fix_up_extension_type_from_spec(PyType_Spec *spec, PyTypeObject *type) { jpayne@69: #if PY_VERSION_HEX > 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API jpayne@69: CYTHON_UNUSED_VAR(spec); jpayne@69: CYTHON_UNUSED_VAR(type); jpayne@69: #else jpayne@69: const PyType_Slot *slot = spec->slots; jpayne@69: while (slot && slot->slot && slot->slot != Py_tp_members) jpayne@69: slot++; jpayne@69: if (slot && slot->slot == Py_tp_members) { jpayne@69: int changed = 0; jpayne@69: #if !(PY_VERSION_HEX <= 0x030900b1 && CYTHON_COMPILING_IN_CPYTHON) jpayne@69: const jpayne@69: #endif jpayne@69: PyMemberDef *memb = (PyMemberDef*) slot->pfunc; jpayne@69: while (memb && memb->name) { jpayne@69: if (memb->name[0] == '_' && memb->name[1] == '_') { jpayne@69: #if PY_VERSION_HEX < 0x030900b1 jpayne@69: if (strcmp(memb->name, "__weaklistoffset__") == 0) { jpayne@69: assert(memb->type == T_PYSSIZET); jpayne@69: assert(memb->flags == READONLY); jpayne@69: type->tp_weaklistoffset = memb->offset; jpayne@69: changed = 1; jpayne@69: } jpayne@69: else if (strcmp(memb->name, "__dictoffset__") == 0) { jpayne@69: assert(memb->type == T_PYSSIZET); jpayne@69: assert(memb->flags == READONLY); jpayne@69: type->tp_dictoffset = memb->offset; jpayne@69: changed = 1; jpayne@69: } jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: else if (strcmp(memb->name, "__vectorcalloffset__") == 0) { jpayne@69: assert(memb->type == T_PYSSIZET); jpayne@69: assert(memb->flags == READONLY); jpayne@69: #if PY_VERSION_HEX >= 0x030800b4 jpayne@69: type->tp_vectorcall_offset = memb->offset; jpayne@69: #else jpayne@69: type->tp_print = (printfunc) memb->offset; jpayne@69: #endif jpayne@69: changed = 1; jpayne@69: } jpayne@69: #endif jpayne@69: #else jpayne@69: if ((0)); jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX <= 0x030900b1 && CYTHON_COMPILING_IN_CPYTHON jpayne@69: else if (strcmp(memb->name, "__module__") == 0) { jpayne@69: PyObject *descr; jpayne@69: assert(memb->type == T_OBJECT); jpayne@69: assert(memb->flags == 0 || memb->flags == READONLY); jpayne@69: descr = PyDescr_NewMember(type, memb); jpayne@69: if (unlikely(!descr)) jpayne@69: return -1; jpayne@69: if (unlikely(PyDict_SetItem(type->tp_dict, PyDescr_NAME(descr), descr) < 0)) { jpayne@69: Py_DECREF(descr); jpayne@69: return -1; jpayne@69: } jpayne@69: Py_DECREF(descr); jpayne@69: changed = 1; jpayne@69: } jpayne@69: #endif jpayne@69: } jpayne@69: memb++; jpayne@69: } jpayne@69: if (changed) jpayne@69: PyType_Modified(type); jpayne@69: } jpayne@69: #endif jpayne@69: return 0; jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* PyFunctionFastCall */ jpayne@69: #if CYTHON_FAST_PYCALL && !CYTHON_VECTORCALL jpayne@69: static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na, jpayne@69: PyObject *globals) { jpayne@69: PyFrameObject *f; jpayne@69: PyThreadState *tstate = __Pyx_PyThreadState_Current; jpayne@69: PyObject **fastlocals; jpayne@69: Py_ssize_t i; jpayne@69: PyObject *result; jpayne@69: assert(globals != NULL); jpayne@69: /* XXX Perhaps we should create a specialized jpayne@69: PyFrame_New() that doesn't take locals, but does jpayne@69: take builtins without sanity checking them. jpayne@69: */ jpayne@69: assert(tstate != NULL); jpayne@69: f = PyFrame_New(tstate, co, globals, NULL); jpayne@69: if (f == NULL) { jpayne@69: return NULL; jpayne@69: } jpayne@69: fastlocals = __Pyx_PyFrame_GetLocalsplus(f); jpayne@69: for (i = 0; i < na; i++) { jpayne@69: Py_INCREF(*args); jpayne@69: fastlocals[i] = *args++; jpayne@69: } jpayne@69: result = PyEval_EvalFrameEx(f,0); jpayne@69: ++tstate->recursion_depth; jpayne@69: Py_DECREF(f); jpayne@69: --tstate->recursion_depth; jpayne@69: return result; jpayne@69: } jpayne@69: static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs) { jpayne@69: PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func); jpayne@69: PyObject *globals = PyFunction_GET_GLOBALS(func); jpayne@69: PyObject *argdefs = PyFunction_GET_DEFAULTS(func); jpayne@69: PyObject *closure; jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: PyObject *kwdefs; jpayne@69: #endif jpayne@69: PyObject *kwtuple, **k; jpayne@69: PyObject **d; jpayne@69: Py_ssize_t nd; jpayne@69: Py_ssize_t nk; jpayne@69: PyObject *result; jpayne@69: assert(kwargs == NULL || PyDict_Check(kwargs)); jpayne@69: nk = kwargs ? PyDict_Size(kwargs) : 0; jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) { jpayne@69: return NULL; jpayne@69: } jpayne@69: #else jpayne@69: if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) { jpayne@69: return NULL; jpayne@69: } jpayne@69: #endif jpayne@69: if ( jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: co->co_kwonlyargcount == 0 && jpayne@69: #endif jpayne@69: likely(kwargs == NULL || nk == 0) && jpayne@69: co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) { jpayne@69: if (argdefs == NULL && co->co_argcount == nargs) { jpayne@69: result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals); jpayne@69: goto done; jpayne@69: } jpayne@69: else if (nargs == 0 && argdefs != NULL jpayne@69: && co->co_argcount == Py_SIZE(argdefs)) { jpayne@69: /* function called with no arguments, but all parameters have jpayne@69: a default value: use default values as arguments .*/ jpayne@69: args = &PyTuple_GET_ITEM(argdefs, 0); jpayne@69: result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals); jpayne@69: goto done; jpayne@69: } jpayne@69: } jpayne@69: if (kwargs != NULL) { jpayne@69: Py_ssize_t pos, i; jpayne@69: kwtuple = PyTuple_New(2 * nk); jpayne@69: if (kwtuple == NULL) { jpayne@69: result = NULL; jpayne@69: goto done; jpayne@69: } jpayne@69: k = &PyTuple_GET_ITEM(kwtuple, 0); jpayne@69: pos = i = 0; jpayne@69: while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) { jpayne@69: Py_INCREF(k[i]); jpayne@69: Py_INCREF(k[i+1]); jpayne@69: i += 2; jpayne@69: } jpayne@69: nk = i / 2; jpayne@69: } jpayne@69: else { jpayne@69: kwtuple = NULL; jpayne@69: k = NULL; jpayne@69: } jpayne@69: closure = PyFunction_GET_CLOSURE(func); jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: kwdefs = PyFunction_GET_KW_DEFAULTS(func); jpayne@69: #endif jpayne@69: if (argdefs != NULL) { jpayne@69: d = &PyTuple_GET_ITEM(argdefs, 0); jpayne@69: nd = Py_SIZE(argdefs); jpayne@69: } jpayne@69: else { jpayne@69: d = NULL; jpayne@69: nd = 0; jpayne@69: } jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL, jpayne@69: args, (int)nargs, jpayne@69: k, (int)nk, jpayne@69: d, (int)nd, kwdefs, closure); jpayne@69: #else jpayne@69: result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL, jpayne@69: args, (int)nargs, jpayne@69: k, (int)nk, jpayne@69: d, (int)nd, closure); jpayne@69: #endif jpayne@69: Py_XDECREF(kwtuple); jpayne@69: done: jpayne@69: Py_LeaveRecursiveCall(); jpayne@69: return result; jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* PyObjectCall */ jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { jpayne@69: PyObject *result; jpayne@69: ternaryfunc call = Py_TYPE(func)->tp_call; jpayne@69: if (unlikely(!call)) jpayne@69: return PyObject_Call(func, arg, kw); jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) jpayne@69: return NULL; jpayne@69: #else jpayne@69: if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) jpayne@69: return NULL; jpayne@69: #endif jpayne@69: result = (*call)(func, arg, kw); jpayne@69: Py_LeaveRecursiveCall(); jpayne@69: if (unlikely(!result) && unlikely(!PyErr_Occurred())) { jpayne@69: PyErr_SetString( jpayne@69: PyExc_SystemError, jpayne@69: "NULL result without error in PyObject_Call"); jpayne@69: } jpayne@69: return result; jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* PyObjectCallMethO */ jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) { jpayne@69: PyObject *self, *result; jpayne@69: PyCFunction cfunc; jpayne@69: cfunc = __Pyx_CyOrPyCFunction_GET_FUNCTION(func); jpayne@69: self = __Pyx_CyOrPyCFunction_GET_SELF(func); jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) jpayne@69: return NULL; jpayne@69: #else jpayne@69: if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) jpayne@69: return NULL; jpayne@69: #endif jpayne@69: result = cfunc(self, arg); jpayne@69: Py_LeaveRecursiveCall(); jpayne@69: if (unlikely(!result) && unlikely(!PyErr_Occurred())) { jpayne@69: PyErr_SetString( jpayne@69: PyExc_SystemError, jpayne@69: "NULL result without error in PyObject_Call"); jpayne@69: } jpayne@69: return result; jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* PyObjectFastCall */ jpayne@69: #if PY_VERSION_HEX < 0x03090000 || CYTHON_COMPILING_IN_LIMITED_API jpayne@69: static PyObject* __Pyx_PyObject_FastCall_fallback(PyObject *func, PyObject **args, size_t nargs, PyObject *kwargs) { jpayne@69: PyObject *argstuple; jpayne@69: PyObject *result = 0; jpayne@69: size_t i; jpayne@69: argstuple = PyTuple_New((Py_ssize_t)nargs); jpayne@69: if (unlikely(!argstuple)) return NULL; jpayne@69: for (i = 0; i < nargs; i++) { jpayne@69: Py_INCREF(args[i]); jpayne@69: if (__Pyx_PyTuple_SET_ITEM(argstuple, (Py_ssize_t)i, args[i]) < 0) goto bad; jpayne@69: } jpayne@69: result = __Pyx_PyObject_Call(func, argstuple, kwargs); jpayne@69: bad: jpayne@69: Py_DECREF(argstuple); jpayne@69: return result; jpayne@69: } jpayne@69: #endif jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyObject_FastCallDict(PyObject *func, PyObject **args, size_t _nargs, PyObject *kwargs) { jpayne@69: Py_ssize_t nargs = __Pyx_PyVectorcall_NARGS(_nargs); jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON jpayne@69: if (nargs == 0 && kwargs == NULL) { jpayne@69: if (__Pyx_CyOrPyCFunction_Check(func) && likely( __Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_NOARGS)) jpayne@69: return __Pyx_PyObject_CallMethO(func, NULL); jpayne@69: } jpayne@69: else if (nargs == 1 && kwargs == NULL) { jpayne@69: if (__Pyx_CyOrPyCFunction_Check(func) && likely( __Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_O)) jpayne@69: return __Pyx_PyObject_CallMethO(func, args[0]); jpayne@69: } jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX < 0x030800B1 jpayne@69: #if CYTHON_FAST_PYCCALL jpayne@69: if (PyCFunction_Check(func)) { jpayne@69: if (kwargs) { jpayne@69: return _PyCFunction_FastCallDict(func, args, nargs, kwargs); jpayne@69: } else { jpayne@69: return _PyCFunction_FastCallKeywords(func, args, nargs, NULL); jpayne@69: } jpayne@69: } jpayne@69: #if PY_VERSION_HEX >= 0x030700A1 jpayne@69: if (!kwargs && __Pyx_IS_TYPE(func, &PyMethodDescr_Type)) { jpayne@69: return _PyMethodDescr_FastCallKeywords(func, args, nargs, NULL); jpayne@69: } jpayne@69: #endif jpayne@69: #endif jpayne@69: #if CYTHON_FAST_PYCALL jpayne@69: if (PyFunction_Check(func)) { jpayne@69: return __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs); jpayne@69: } jpayne@69: #endif jpayne@69: #endif jpayne@69: if (kwargs == NULL) { jpayne@69: #if CYTHON_VECTORCALL jpayne@69: #if PY_VERSION_HEX < 0x03090000 jpayne@69: vectorcallfunc f = _PyVectorcall_Function(func); jpayne@69: #else jpayne@69: vectorcallfunc f = PyVectorcall_Function(func); jpayne@69: #endif jpayne@69: if (f) { jpayne@69: return f(func, args, (size_t)nargs, NULL); jpayne@69: } jpayne@69: #elif defined(__Pyx_CyFunction_USED) && CYTHON_BACKPORT_VECTORCALL jpayne@69: if (__Pyx_CyFunction_CheckExact(func)) { jpayne@69: __pyx_vectorcallfunc f = __Pyx_CyFunction_func_vectorcall(func); jpayne@69: if (f) return f(func, args, (size_t)nargs, NULL); jpayne@69: } jpayne@69: #endif jpayne@69: } jpayne@69: if (nargs == 0) { jpayne@69: return __Pyx_PyObject_Call(func, __pyx_empty_tuple, kwargs); jpayne@69: } jpayne@69: #if PY_VERSION_HEX >= 0x03090000 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: return PyObject_VectorcallDict(func, args, (size_t)nargs, kwargs); jpayne@69: #else jpayne@69: return __Pyx_PyObject_FastCall_fallback(func, args, (size_t)nargs, kwargs); jpayne@69: #endif jpayne@69: } jpayne@69: jpayne@69: /* PyObjectCallNoArg */ jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) { jpayne@69: PyObject *arg[2] = {NULL, NULL}; jpayne@69: return __Pyx_PyObject_FastCall(func, arg + 1, 0 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET); jpayne@69: } jpayne@69: jpayne@69: /* PyObjectCallOneArg */ jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { jpayne@69: PyObject *args[2] = {NULL, arg}; jpayne@69: return __Pyx_PyObject_FastCall(func, args+1, 1 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET); jpayne@69: } jpayne@69: jpayne@69: /* PyObjectGetMethod */ jpayne@69: static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method) { jpayne@69: PyObject *attr; jpayne@69: #if CYTHON_UNPACK_METHODS && CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_PYTYPE_LOOKUP jpayne@69: __Pyx_TypeName type_name; jpayne@69: PyTypeObject *tp = Py_TYPE(obj); jpayne@69: PyObject *descr; jpayne@69: descrgetfunc f = NULL; jpayne@69: PyObject **dictptr, *dict; jpayne@69: int meth_found = 0; jpayne@69: assert (*method == NULL); jpayne@69: if (unlikely(tp->tp_getattro != PyObject_GenericGetAttr)) { jpayne@69: attr = __Pyx_PyObject_GetAttrStr(obj, name); jpayne@69: goto try_unpack; jpayne@69: } jpayne@69: if (unlikely(tp->tp_dict == NULL) && unlikely(PyType_Ready(tp) < 0)) { jpayne@69: return 0; jpayne@69: } jpayne@69: descr = _PyType_Lookup(tp, name); jpayne@69: if (likely(descr != NULL)) { jpayne@69: Py_INCREF(descr); jpayne@69: #if defined(Py_TPFLAGS_METHOD_DESCRIPTOR) && Py_TPFLAGS_METHOD_DESCRIPTOR jpayne@69: if (__Pyx_PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_METHOD_DESCRIPTOR)) jpayne@69: #elif PY_MAJOR_VERSION >= 3 jpayne@69: #ifdef __Pyx_CyFunction_USED jpayne@69: if (likely(PyFunction_Check(descr) || __Pyx_IS_TYPE(descr, &PyMethodDescr_Type) || __Pyx_CyFunction_Check(descr))) jpayne@69: #else jpayne@69: if (likely(PyFunction_Check(descr) || __Pyx_IS_TYPE(descr, &PyMethodDescr_Type))) jpayne@69: #endif jpayne@69: #else jpayne@69: #ifdef __Pyx_CyFunction_USED jpayne@69: if (likely(PyFunction_Check(descr) || __Pyx_CyFunction_Check(descr))) jpayne@69: #else jpayne@69: if (likely(PyFunction_Check(descr))) jpayne@69: #endif jpayne@69: #endif jpayne@69: { jpayne@69: meth_found = 1; jpayne@69: } else { jpayne@69: f = Py_TYPE(descr)->tp_descr_get; jpayne@69: if (f != NULL && PyDescr_IsData(descr)) { jpayne@69: attr = f(descr, obj, (PyObject *)Py_TYPE(obj)); jpayne@69: Py_DECREF(descr); jpayne@69: goto try_unpack; jpayne@69: } jpayne@69: } jpayne@69: } jpayne@69: dictptr = _PyObject_GetDictPtr(obj); jpayne@69: if (dictptr != NULL && (dict = *dictptr) != NULL) { jpayne@69: Py_INCREF(dict); jpayne@69: attr = __Pyx_PyDict_GetItemStr(dict, name); jpayne@69: if (attr != NULL) { jpayne@69: Py_INCREF(attr); jpayne@69: Py_DECREF(dict); jpayne@69: Py_XDECREF(descr); jpayne@69: goto try_unpack; jpayne@69: } jpayne@69: Py_DECREF(dict); jpayne@69: } jpayne@69: if (meth_found) { jpayne@69: *method = descr; jpayne@69: return 1; jpayne@69: } jpayne@69: if (f != NULL) { jpayne@69: attr = f(descr, obj, (PyObject *)Py_TYPE(obj)); jpayne@69: Py_DECREF(descr); jpayne@69: goto try_unpack; jpayne@69: } jpayne@69: if (likely(descr != NULL)) { jpayne@69: *method = descr; jpayne@69: return 0; jpayne@69: } jpayne@69: type_name = __Pyx_PyType_GetName(tp); jpayne@69: PyErr_Format(PyExc_AttributeError, jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: "'" __Pyx_FMT_TYPENAME "' object has no attribute '%U'", jpayne@69: type_name, name); jpayne@69: #else jpayne@69: "'" __Pyx_FMT_TYPENAME "' object has no attribute '%.400s'", jpayne@69: type_name, PyString_AS_STRING(name)); jpayne@69: #endif jpayne@69: __Pyx_DECREF_TypeName(type_name); jpayne@69: return 0; jpayne@69: #else jpayne@69: attr = __Pyx_PyObject_GetAttrStr(obj, name); jpayne@69: goto try_unpack; jpayne@69: #endif jpayne@69: try_unpack: jpayne@69: #if CYTHON_UNPACK_METHODS jpayne@69: if (likely(attr) && PyMethod_Check(attr) && likely(PyMethod_GET_SELF(attr) == obj)) { jpayne@69: PyObject *function = PyMethod_GET_FUNCTION(attr); jpayne@69: Py_INCREF(function); jpayne@69: Py_DECREF(attr); jpayne@69: *method = function; jpayne@69: return 1; jpayne@69: } jpayne@69: #endif jpayne@69: *method = attr; jpayne@69: return 0; jpayne@69: } jpayne@69: jpayne@69: /* PyObjectCallMethod0 */ jpayne@69: static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name) { jpayne@69: PyObject *method = NULL, *result = NULL; jpayne@69: int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method); jpayne@69: if (likely(is_method)) { jpayne@69: result = __Pyx_PyObject_CallOneArg(method, obj); jpayne@69: Py_DECREF(method); jpayne@69: return result; jpayne@69: } jpayne@69: if (unlikely(!method)) goto bad; jpayne@69: result = __Pyx_PyObject_CallNoArg(method); jpayne@69: Py_DECREF(method); jpayne@69: bad: jpayne@69: return result; jpayne@69: } jpayne@69: jpayne@69: /* ValidateBasesTuple */ jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON || CYTHON_COMPILING_IN_LIMITED_API || CYTHON_USE_TYPE_SPECS jpayne@69: static int __Pyx_validate_bases_tuple(const char *type_name, Py_ssize_t dictoffset, PyObject *bases) { jpayne@69: Py_ssize_t i, n; jpayne@69: #if CYTHON_ASSUME_SAFE_MACROS jpayne@69: n = PyTuple_GET_SIZE(bases); jpayne@69: #else jpayne@69: n = PyTuple_Size(bases); jpayne@69: if (n < 0) return -1; jpayne@69: #endif jpayne@69: for (i = 1; i < n; i++) jpayne@69: { jpayne@69: #if CYTHON_AVOID_BORROWED_REFS jpayne@69: PyObject *b0 = PySequence_GetItem(bases, i); jpayne@69: if (!b0) return -1; jpayne@69: #elif CYTHON_ASSUME_SAFE_MACROS jpayne@69: PyObject *b0 = PyTuple_GET_ITEM(bases, i); jpayne@69: #else jpayne@69: PyObject *b0 = PyTuple_GetItem(bases, i); jpayne@69: if (!b0) return -1; jpayne@69: #endif jpayne@69: PyTypeObject *b; jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: if (PyClass_Check(b0)) jpayne@69: { jpayne@69: PyErr_Format(PyExc_TypeError, "base class '%.200s' is an old-style class", jpayne@69: PyString_AS_STRING(((PyClassObject*)b0)->cl_name)); jpayne@69: #if CYTHON_AVOID_BORROWED_REFS jpayne@69: Py_DECREF(b0); jpayne@69: #endif jpayne@69: return -1; jpayne@69: } jpayne@69: #endif jpayne@69: b = (PyTypeObject*) b0; jpayne@69: if (!__Pyx_PyType_HasFeature(b, Py_TPFLAGS_HEAPTYPE)) jpayne@69: { jpayne@69: __Pyx_TypeName b_name = __Pyx_PyType_GetName(b); jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "base class '" __Pyx_FMT_TYPENAME "' is not a heap type", b_name); jpayne@69: __Pyx_DECREF_TypeName(b_name); jpayne@69: #if CYTHON_AVOID_BORROWED_REFS jpayne@69: Py_DECREF(b0); jpayne@69: #endif jpayne@69: return -1; jpayne@69: } jpayne@69: if (dictoffset == 0) jpayne@69: { jpayne@69: Py_ssize_t b_dictoffset = 0; jpayne@69: #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY jpayne@69: b_dictoffset = b->tp_dictoffset; jpayne@69: #else jpayne@69: PyObject *py_b_dictoffset = PyObject_GetAttrString((PyObject*)b, "__dictoffset__"); jpayne@69: if (!py_b_dictoffset) goto dictoffset_return; jpayne@69: b_dictoffset = PyLong_AsSsize_t(py_b_dictoffset); jpayne@69: Py_DECREF(py_b_dictoffset); jpayne@69: if (b_dictoffset == -1 && PyErr_Occurred()) goto dictoffset_return; jpayne@69: #endif jpayne@69: if (b_dictoffset) { jpayne@69: { jpayne@69: __Pyx_TypeName b_name = __Pyx_PyType_GetName(b); jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "extension type '%.200s' has no __dict__ slot, " jpayne@69: "but base type '" __Pyx_FMT_TYPENAME "' has: " jpayne@69: "either add 'cdef dict __dict__' to the extension type " jpayne@69: "or add '__slots__ = [...]' to the base type", jpayne@69: type_name, b_name); jpayne@69: __Pyx_DECREF_TypeName(b_name); jpayne@69: } jpayne@69: #if !(CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY) jpayne@69: dictoffset_return: jpayne@69: #endif jpayne@69: #if CYTHON_AVOID_BORROWED_REFS jpayne@69: Py_DECREF(b0); jpayne@69: #endif jpayne@69: return -1; jpayne@69: } jpayne@69: } jpayne@69: #if CYTHON_AVOID_BORROWED_REFS jpayne@69: Py_DECREF(b0); jpayne@69: #endif jpayne@69: } jpayne@69: return 0; jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* PyType_Ready */ jpayne@69: static int __Pyx_PyType_Ready(PyTypeObject *t) { jpayne@69: #if CYTHON_USE_TYPE_SPECS || !(CYTHON_COMPILING_IN_CPYTHON || CYTHON_COMPILING_IN_LIMITED_API) || defined(PYSTON_MAJOR_VERSION) jpayne@69: (void)__Pyx_PyObject_CallMethod0; jpayne@69: #if CYTHON_USE_TYPE_SPECS jpayne@69: (void)__Pyx_validate_bases_tuple; jpayne@69: #endif jpayne@69: return PyType_Ready(t); jpayne@69: #else jpayne@69: int r; jpayne@69: PyObject *bases = __Pyx_PyType_GetSlot(t, tp_bases, PyObject*); jpayne@69: if (bases && unlikely(__Pyx_validate_bases_tuple(t->tp_name, t->tp_dictoffset, bases) == -1)) jpayne@69: return -1; jpayne@69: #if PY_VERSION_HEX >= 0x03050000 && !defined(PYSTON_MAJOR_VERSION) jpayne@69: { jpayne@69: int gc_was_enabled; jpayne@69: #if PY_VERSION_HEX >= 0x030A00b1 jpayne@69: gc_was_enabled = PyGC_Disable(); jpayne@69: (void)__Pyx_PyObject_CallMethod0; jpayne@69: #else jpayne@69: PyObject *ret, *py_status; jpayne@69: PyObject *gc = NULL; jpayne@69: #if PY_VERSION_HEX >= 0x030700a1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM+0 >= 0x07030400) jpayne@69: gc = PyImport_GetModule(__pyx_kp_u_gc); jpayne@69: #endif jpayne@69: if (unlikely(!gc)) gc = PyImport_Import(__pyx_kp_u_gc); jpayne@69: if (unlikely(!gc)) return -1; jpayne@69: py_status = __Pyx_PyObject_CallMethod0(gc, __pyx_kp_u_isenabled); jpayne@69: if (unlikely(!py_status)) { jpayne@69: Py_DECREF(gc); jpayne@69: return -1; jpayne@69: } jpayne@69: gc_was_enabled = __Pyx_PyObject_IsTrue(py_status); jpayne@69: Py_DECREF(py_status); jpayne@69: if (gc_was_enabled > 0) { jpayne@69: ret = __Pyx_PyObject_CallMethod0(gc, __pyx_kp_u_disable); jpayne@69: if (unlikely(!ret)) { jpayne@69: Py_DECREF(gc); jpayne@69: return -1; jpayne@69: } jpayne@69: Py_DECREF(ret); jpayne@69: } else if (unlikely(gc_was_enabled == -1)) { jpayne@69: Py_DECREF(gc); jpayne@69: return -1; jpayne@69: } jpayne@69: #endif jpayne@69: t->tp_flags |= Py_TPFLAGS_HEAPTYPE; jpayne@69: #if PY_VERSION_HEX >= 0x030A0000 jpayne@69: t->tp_flags |= Py_TPFLAGS_IMMUTABLETYPE; jpayne@69: #endif jpayne@69: #else jpayne@69: (void)__Pyx_PyObject_CallMethod0; jpayne@69: #endif jpayne@69: r = PyType_Ready(t); jpayne@69: #if PY_VERSION_HEX >= 0x03050000 && !defined(PYSTON_MAJOR_VERSION) jpayne@69: t->tp_flags &= ~Py_TPFLAGS_HEAPTYPE; jpayne@69: #if PY_VERSION_HEX >= 0x030A00b1 jpayne@69: if (gc_was_enabled) jpayne@69: PyGC_Enable(); jpayne@69: #else jpayne@69: if (gc_was_enabled) { jpayne@69: PyObject *tp, *v, *tb; jpayne@69: PyErr_Fetch(&tp, &v, &tb); jpayne@69: ret = __Pyx_PyObject_CallMethod0(gc, __pyx_kp_u_enable); jpayne@69: if (likely(ret || r == -1)) { jpayne@69: Py_XDECREF(ret); jpayne@69: PyErr_Restore(tp, v, tb); jpayne@69: } else { jpayne@69: Py_XDECREF(tp); jpayne@69: Py_XDECREF(v); jpayne@69: Py_XDECREF(tb); jpayne@69: r = -1; jpayne@69: } jpayne@69: } jpayne@69: Py_DECREF(gc); jpayne@69: #endif jpayne@69: } jpayne@69: #endif jpayne@69: return r; jpayne@69: #endif jpayne@69: } jpayne@69: jpayne@69: /* PyObject_GenericGetAttrNoDict */ jpayne@69: #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 jpayne@69: static PyObject *__Pyx_RaiseGenericGetAttributeError(PyTypeObject *tp, PyObject *attr_name) { jpayne@69: __Pyx_TypeName type_name = __Pyx_PyType_GetName(tp); jpayne@69: PyErr_Format(PyExc_AttributeError, jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: "'" __Pyx_FMT_TYPENAME "' object has no attribute '%U'", jpayne@69: type_name, attr_name); jpayne@69: #else jpayne@69: "'" __Pyx_FMT_TYPENAME "' object has no attribute '%.400s'", jpayne@69: type_name, PyString_AS_STRING(attr_name)); jpayne@69: #endif jpayne@69: __Pyx_DECREF_TypeName(type_name); jpayne@69: return NULL; jpayne@69: } jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name) { jpayne@69: PyObject *descr; jpayne@69: PyTypeObject *tp = Py_TYPE(obj); jpayne@69: if (unlikely(!PyString_Check(attr_name))) { jpayne@69: return PyObject_GenericGetAttr(obj, attr_name); jpayne@69: } jpayne@69: assert(!tp->tp_dictoffset); jpayne@69: descr = _PyType_Lookup(tp, attr_name); jpayne@69: if (unlikely(!descr)) { jpayne@69: return __Pyx_RaiseGenericGetAttributeError(tp, attr_name); jpayne@69: } jpayne@69: Py_INCREF(descr); jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: if (likely(PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_HAVE_CLASS))) jpayne@69: #endif jpayne@69: { jpayne@69: descrgetfunc f = Py_TYPE(descr)->tp_descr_get; jpayne@69: if (unlikely(f)) { jpayne@69: PyObject *res = f(descr, obj, (PyObject *)tp); jpayne@69: Py_DECREF(descr); jpayne@69: return res; jpayne@69: } jpayne@69: } jpayne@69: return descr; jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* PyObject_GenericGetAttr */ jpayne@69: #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 jpayne@69: static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name) { jpayne@69: if (unlikely(Py_TYPE(obj)->tp_dictoffset)) { jpayne@69: return PyObject_GenericGetAttr(obj, attr_name); jpayne@69: } jpayne@69: return __Pyx_PyObject_GenericGetAttrNoDict(obj, attr_name); jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* SetVTable */ jpayne@69: static int __Pyx_SetVtable(PyTypeObject *type, void *vtable) { jpayne@69: PyObject *ob = PyCapsule_New(vtable, 0, 0); jpayne@69: if (unlikely(!ob)) jpayne@69: goto bad; jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: if (unlikely(PyObject_SetAttr((PyObject *) type, __pyx_n_s_pyx_vtable, ob) < 0)) jpayne@69: #else jpayne@69: if (unlikely(PyDict_SetItem(type->tp_dict, __pyx_n_s_pyx_vtable, ob) < 0)) jpayne@69: #endif jpayne@69: goto bad; jpayne@69: Py_DECREF(ob); jpayne@69: return 0; jpayne@69: bad: jpayne@69: Py_XDECREF(ob); jpayne@69: return -1; jpayne@69: } jpayne@69: jpayne@69: /* MergeVTables */ jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: static int __Pyx_MergeVtables(PyTypeObject *type) { jpayne@69: int i; jpayne@69: void** base_vtables; jpayne@69: __Pyx_TypeName tp_base_name; jpayne@69: __Pyx_TypeName base_name; jpayne@69: void* unknown = (void*)-1; jpayne@69: PyObject* bases = type->tp_bases; jpayne@69: int base_depth = 0; jpayne@69: { jpayne@69: PyTypeObject* base = type->tp_base; jpayne@69: while (base) { jpayne@69: base_depth += 1; jpayne@69: base = base->tp_base; jpayne@69: } jpayne@69: } jpayne@69: base_vtables = (void**) malloc(sizeof(void*) * (size_t)(base_depth + 1)); jpayne@69: base_vtables[0] = unknown; jpayne@69: for (i = 1; i < PyTuple_GET_SIZE(bases); i++) { jpayne@69: void* base_vtable = __Pyx_GetVtable(((PyTypeObject*)PyTuple_GET_ITEM(bases, i))); jpayne@69: if (base_vtable != NULL) { jpayne@69: int j; jpayne@69: PyTypeObject* base = type->tp_base; jpayne@69: for (j = 0; j < base_depth; j++) { jpayne@69: if (base_vtables[j] == unknown) { jpayne@69: base_vtables[j] = __Pyx_GetVtable(base); jpayne@69: base_vtables[j + 1] = unknown; jpayne@69: } jpayne@69: if (base_vtables[j] == base_vtable) { jpayne@69: break; jpayne@69: } else if (base_vtables[j] == NULL) { jpayne@69: goto bad; jpayne@69: } jpayne@69: base = base->tp_base; jpayne@69: } jpayne@69: } jpayne@69: } jpayne@69: PyErr_Clear(); jpayne@69: free(base_vtables); jpayne@69: return 0; jpayne@69: bad: jpayne@69: tp_base_name = __Pyx_PyType_GetName(type->tp_base); jpayne@69: base_name = __Pyx_PyType_GetName((PyTypeObject*)PyTuple_GET_ITEM(bases, i)); jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "multiple bases have vtable conflict: '" __Pyx_FMT_TYPENAME "' and '" __Pyx_FMT_TYPENAME "'", tp_base_name, base_name); jpayne@69: __Pyx_DECREF_TypeName(tp_base_name); jpayne@69: __Pyx_DECREF_TypeName(base_name); jpayne@69: free(base_vtables); jpayne@69: return -1; jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* SetupReduce */ jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: static int __Pyx_setup_reduce_is_named(PyObject* meth, PyObject* name) { jpayne@69: int ret; jpayne@69: PyObject *name_attr; jpayne@69: name_attr = __Pyx_PyObject_GetAttrStrNoError(meth, __pyx_n_s_name); jpayne@69: if (likely(name_attr)) { jpayne@69: ret = PyObject_RichCompareBool(name_attr, name, Py_EQ); jpayne@69: } else { jpayne@69: ret = -1; jpayne@69: } jpayne@69: if (unlikely(ret < 0)) { jpayne@69: PyErr_Clear(); jpayne@69: ret = 0; jpayne@69: } jpayne@69: Py_XDECREF(name_attr); jpayne@69: return ret; jpayne@69: } jpayne@69: static int __Pyx_setup_reduce(PyObject* type_obj) { jpayne@69: int ret = 0; jpayne@69: PyObject *object_reduce = NULL; jpayne@69: PyObject *object_getstate = NULL; jpayne@69: PyObject *object_reduce_ex = NULL; jpayne@69: PyObject *reduce = NULL; jpayne@69: PyObject *reduce_ex = NULL; jpayne@69: PyObject *reduce_cython = NULL; jpayne@69: PyObject *setstate = NULL; jpayne@69: PyObject *setstate_cython = NULL; jpayne@69: PyObject *getstate = NULL; jpayne@69: #if CYTHON_USE_PYTYPE_LOOKUP jpayne@69: getstate = _PyType_Lookup((PyTypeObject*)type_obj, __pyx_n_s_getstate); jpayne@69: #else jpayne@69: getstate = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_getstate); jpayne@69: if (!getstate && PyErr_Occurred()) { jpayne@69: goto __PYX_BAD; jpayne@69: } jpayne@69: #endif jpayne@69: if (getstate) { jpayne@69: #if CYTHON_USE_PYTYPE_LOOKUP jpayne@69: object_getstate = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_getstate); jpayne@69: #else jpayne@69: object_getstate = __Pyx_PyObject_GetAttrStrNoError((PyObject*)&PyBaseObject_Type, __pyx_n_s_getstate); jpayne@69: if (!object_getstate && PyErr_Occurred()) { jpayne@69: goto __PYX_BAD; jpayne@69: } jpayne@69: #endif jpayne@69: if (object_getstate != getstate) { jpayne@69: goto __PYX_GOOD; jpayne@69: } jpayne@69: } jpayne@69: #if CYTHON_USE_PYTYPE_LOOKUP jpayne@69: object_reduce_ex = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD; jpayne@69: #else jpayne@69: object_reduce_ex = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD; jpayne@69: #endif jpayne@69: reduce_ex = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_ex); if (unlikely(!reduce_ex)) goto __PYX_BAD; jpayne@69: if (reduce_ex == object_reduce_ex) { jpayne@69: #if CYTHON_USE_PYTYPE_LOOKUP jpayne@69: object_reduce = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto __PYX_BAD; jpayne@69: #else jpayne@69: object_reduce = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto __PYX_BAD; jpayne@69: #endif jpayne@69: reduce = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce); if (unlikely(!reduce)) goto __PYX_BAD; jpayne@69: if (reduce == object_reduce || __Pyx_setup_reduce_is_named(reduce, __pyx_n_s_reduce_cython)) { jpayne@69: reduce_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_reduce_cython); jpayne@69: if (likely(reduce_cython)) { jpayne@69: ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce, reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD; jpayne@69: ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD; jpayne@69: } else if (reduce == object_reduce || PyErr_Occurred()) { jpayne@69: goto __PYX_BAD; jpayne@69: } jpayne@69: setstate = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_setstate); jpayne@69: if (!setstate) PyErr_Clear(); jpayne@69: if (!setstate || __Pyx_setup_reduce_is_named(setstate, __pyx_n_s_setstate_cython)) { jpayne@69: setstate_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_setstate_cython); jpayne@69: if (likely(setstate_cython)) { jpayne@69: ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate, setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD; jpayne@69: ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD; jpayne@69: } else if (!setstate || PyErr_Occurred()) { jpayne@69: goto __PYX_BAD; jpayne@69: } jpayne@69: } jpayne@69: PyType_Modified((PyTypeObject*)type_obj); jpayne@69: } jpayne@69: } jpayne@69: goto __PYX_GOOD; jpayne@69: __PYX_BAD: jpayne@69: if (!PyErr_Occurred()) { jpayne@69: __Pyx_TypeName type_obj_name = jpayne@69: __Pyx_PyType_GetName((PyTypeObject*)type_obj); jpayne@69: PyErr_Format(PyExc_RuntimeError, jpayne@69: "Unable to initialize pickling for " __Pyx_FMT_TYPENAME, type_obj_name); jpayne@69: __Pyx_DECREF_TypeName(type_obj_name); jpayne@69: } jpayne@69: ret = -1; jpayne@69: __PYX_GOOD: jpayne@69: #if !CYTHON_USE_PYTYPE_LOOKUP jpayne@69: Py_XDECREF(object_reduce); jpayne@69: Py_XDECREF(object_reduce_ex); jpayne@69: Py_XDECREF(object_getstate); jpayne@69: Py_XDECREF(getstate); jpayne@69: #endif jpayne@69: Py_XDECREF(reduce); jpayne@69: Py_XDECREF(reduce_ex); jpayne@69: Py_XDECREF(reduce_cython); jpayne@69: Py_XDECREF(setstate); jpayne@69: Py_XDECREF(setstate_cython); jpayne@69: return ret; jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* Import */ jpayne@69: static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { jpayne@69: PyObject *module = 0; jpayne@69: PyObject *empty_dict = 0; jpayne@69: PyObject *empty_list = 0; jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: PyObject *py_import; jpayne@69: py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); jpayne@69: if (unlikely(!py_import)) jpayne@69: goto bad; jpayne@69: if (!from_list) { jpayne@69: empty_list = PyList_New(0); jpayne@69: if (unlikely(!empty_list)) jpayne@69: goto bad; jpayne@69: from_list = empty_list; jpayne@69: } jpayne@69: #endif jpayne@69: empty_dict = PyDict_New(); jpayne@69: if (unlikely(!empty_dict)) jpayne@69: goto bad; jpayne@69: { jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: if (level == -1) { jpayne@69: if (strchr(__Pyx_MODULE_NAME, '.') != NULL) { jpayne@69: module = PyImport_ImportModuleLevelObject( jpayne@69: name, __pyx_d, empty_dict, from_list, 1); jpayne@69: if (unlikely(!module)) { jpayne@69: if (unlikely(!PyErr_ExceptionMatches(PyExc_ImportError))) jpayne@69: goto bad; jpayne@69: PyErr_Clear(); jpayne@69: } jpayne@69: } jpayne@69: level = 0; jpayne@69: } jpayne@69: #endif jpayne@69: if (!module) { jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: PyObject *py_level = PyInt_FromLong(level); jpayne@69: if (unlikely(!py_level)) jpayne@69: goto bad; jpayne@69: module = PyObject_CallFunctionObjArgs(py_import, jpayne@69: name, __pyx_d, empty_dict, from_list, py_level, (PyObject *)NULL); jpayne@69: Py_DECREF(py_level); jpayne@69: #else jpayne@69: module = PyImport_ImportModuleLevelObject( jpayne@69: name, __pyx_d, empty_dict, from_list, level); jpayne@69: #endif jpayne@69: } jpayne@69: } jpayne@69: bad: jpayne@69: Py_XDECREF(empty_dict); jpayne@69: Py_XDECREF(empty_list); jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: Py_XDECREF(py_import); jpayne@69: #endif jpayne@69: return module; jpayne@69: } jpayne@69: jpayne@69: /* ImportDottedModule */ jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: static PyObject *__Pyx__ImportDottedModule_Error(PyObject *name, PyObject *parts_tuple, Py_ssize_t count) { jpayne@69: PyObject *partial_name = NULL, *slice = NULL, *sep = NULL; jpayne@69: if (unlikely(PyErr_Occurred())) { jpayne@69: PyErr_Clear(); jpayne@69: } jpayne@69: if (likely(PyTuple_GET_SIZE(parts_tuple) == count)) { jpayne@69: partial_name = name; jpayne@69: } else { jpayne@69: slice = PySequence_GetSlice(parts_tuple, 0, count); jpayne@69: if (unlikely(!slice)) jpayne@69: goto bad; jpayne@69: sep = PyUnicode_FromStringAndSize(".", 1); jpayne@69: if (unlikely(!sep)) jpayne@69: goto bad; jpayne@69: partial_name = PyUnicode_Join(sep, slice); jpayne@69: } jpayne@69: PyErr_Format( jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: PyExc_ImportError, jpayne@69: "No module named '%s'", PyString_AS_STRING(partial_name)); jpayne@69: #else jpayne@69: #if PY_VERSION_HEX >= 0x030600B1 jpayne@69: PyExc_ModuleNotFoundError, jpayne@69: #else jpayne@69: PyExc_ImportError, jpayne@69: #endif jpayne@69: "No module named '%U'", partial_name); jpayne@69: #endif jpayne@69: bad: jpayne@69: Py_XDECREF(sep); jpayne@69: Py_XDECREF(slice); jpayne@69: Py_XDECREF(partial_name); jpayne@69: return NULL; jpayne@69: } jpayne@69: #endif jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: static PyObject *__Pyx__ImportDottedModule_Lookup(PyObject *name) { jpayne@69: PyObject *imported_module; jpayne@69: #if PY_VERSION_HEX < 0x030700A1 || (CYTHON_COMPILING_IN_PYPY && PYPY_VERSION_NUM < 0x07030400) jpayne@69: PyObject *modules = PyImport_GetModuleDict(); jpayne@69: if (unlikely(!modules)) jpayne@69: return NULL; jpayne@69: imported_module = __Pyx_PyDict_GetItemStr(modules, name); jpayne@69: Py_XINCREF(imported_module); jpayne@69: #else jpayne@69: imported_module = PyImport_GetModule(name); jpayne@69: #endif jpayne@69: return imported_module; jpayne@69: } jpayne@69: #endif jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: static PyObject *__Pyx_ImportDottedModule_WalkParts(PyObject *module, PyObject *name, PyObject *parts_tuple) { jpayne@69: Py_ssize_t i, nparts; jpayne@69: nparts = PyTuple_GET_SIZE(parts_tuple); jpayne@69: for (i=1; i < nparts && module; i++) { jpayne@69: PyObject *part, *submodule; jpayne@69: #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS jpayne@69: part = PyTuple_GET_ITEM(parts_tuple, i); jpayne@69: #else jpayne@69: part = PySequence_ITEM(parts_tuple, i); jpayne@69: #endif jpayne@69: submodule = __Pyx_PyObject_GetAttrStrNoError(module, part); jpayne@69: #if !(CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS) jpayne@69: Py_DECREF(part); jpayne@69: #endif jpayne@69: Py_DECREF(module); jpayne@69: module = submodule; jpayne@69: } jpayne@69: if (unlikely(!module)) { jpayne@69: return __Pyx__ImportDottedModule_Error(name, parts_tuple, i); jpayne@69: } jpayne@69: return module; jpayne@69: } jpayne@69: #endif jpayne@69: static PyObject *__Pyx__ImportDottedModule(PyObject *name, PyObject *parts_tuple) { jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: PyObject *module, *from_list, *star = __pyx_n_s__5; jpayne@69: CYTHON_UNUSED_VAR(parts_tuple); jpayne@69: from_list = PyList_New(1); jpayne@69: if (unlikely(!from_list)) jpayne@69: return NULL; jpayne@69: Py_INCREF(star); jpayne@69: PyList_SET_ITEM(from_list, 0, star); jpayne@69: module = __Pyx_Import(name, from_list, 0); jpayne@69: Py_DECREF(from_list); jpayne@69: return module; jpayne@69: #else jpayne@69: PyObject *imported_module; jpayne@69: PyObject *module = __Pyx_Import(name, NULL, 0); jpayne@69: if (!parts_tuple || unlikely(!module)) jpayne@69: return module; jpayne@69: imported_module = __Pyx__ImportDottedModule_Lookup(name); jpayne@69: if (likely(imported_module)) { jpayne@69: Py_DECREF(module); jpayne@69: return imported_module; jpayne@69: } jpayne@69: PyErr_Clear(); jpayne@69: return __Pyx_ImportDottedModule_WalkParts(module, name, parts_tuple); jpayne@69: #endif jpayne@69: } jpayne@69: static PyObject *__Pyx_ImportDottedModule(PyObject *name, PyObject *parts_tuple) { jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030400B1 jpayne@69: PyObject *module = __Pyx__ImportDottedModule_Lookup(name); jpayne@69: if (likely(module)) { jpayne@69: PyObject *spec = __Pyx_PyObject_GetAttrStrNoError(module, __pyx_n_s_spec); jpayne@69: if (likely(spec)) { jpayne@69: PyObject *unsafe = __Pyx_PyObject_GetAttrStrNoError(spec, __pyx_n_s_initializing); jpayne@69: if (likely(!unsafe || !__Pyx_PyObject_IsTrue(unsafe))) { jpayne@69: Py_DECREF(spec); jpayne@69: spec = NULL; jpayne@69: } jpayne@69: Py_XDECREF(unsafe); jpayne@69: } jpayne@69: if (likely(!spec)) { jpayne@69: PyErr_Clear(); jpayne@69: return module; jpayne@69: } jpayne@69: Py_DECREF(spec); jpayne@69: Py_DECREF(module); jpayne@69: } else if (PyErr_Occurred()) { jpayne@69: PyErr_Clear(); jpayne@69: } jpayne@69: #endif jpayne@69: return __Pyx__ImportDottedModule(name, parts_tuple); jpayne@69: } jpayne@69: jpayne@69: /* FetchSharedCythonModule */ jpayne@69: static PyObject *__Pyx_FetchSharedCythonABIModule(void) { jpayne@69: return __Pyx_PyImport_AddModuleRef((char*) __PYX_ABI_MODULE_NAME); jpayne@69: } jpayne@69: jpayne@69: /* FetchCommonType */ jpayne@69: static int __Pyx_VerifyCachedType(PyObject *cached_type, jpayne@69: const char *name, jpayne@69: Py_ssize_t basicsize, jpayne@69: Py_ssize_t expected_basicsize) { jpayne@69: if (!PyType_Check(cached_type)) { jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "Shared Cython type %.200s is not a type object", name); jpayne@69: return -1; jpayne@69: } jpayne@69: if (basicsize != expected_basicsize) { jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "Shared Cython type %.200s has the wrong size, try recompiling", jpayne@69: name); jpayne@69: return -1; jpayne@69: } jpayne@69: return 0; jpayne@69: } jpayne@69: #if !CYTHON_USE_TYPE_SPECS jpayne@69: static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type) { jpayne@69: PyObject* abi_module; jpayne@69: const char* object_name; jpayne@69: PyTypeObject *cached_type = NULL; jpayne@69: abi_module = __Pyx_FetchSharedCythonABIModule(); jpayne@69: if (!abi_module) return NULL; jpayne@69: object_name = strrchr(type->tp_name, '.'); jpayne@69: object_name = object_name ? object_name+1 : type->tp_name; jpayne@69: cached_type = (PyTypeObject*) PyObject_GetAttrString(abi_module, object_name); jpayne@69: if (cached_type) { jpayne@69: if (__Pyx_VerifyCachedType( jpayne@69: (PyObject *)cached_type, jpayne@69: object_name, jpayne@69: cached_type->tp_basicsize, jpayne@69: type->tp_basicsize) < 0) { jpayne@69: goto bad; jpayne@69: } jpayne@69: goto done; jpayne@69: } jpayne@69: if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad; jpayne@69: PyErr_Clear(); jpayne@69: if (PyType_Ready(type) < 0) goto bad; jpayne@69: if (PyObject_SetAttrString(abi_module, object_name, (PyObject *)type) < 0) jpayne@69: goto bad; jpayne@69: Py_INCREF(type); jpayne@69: cached_type = type; jpayne@69: done: jpayne@69: Py_DECREF(abi_module); jpayne@69: return cached_type; jpayne@69: bad: jpayne@69: Py_XDECREF(cached_type); jpayne@69: cached_type = NULL; jpayne@69: goto done; jpayne@69: } jpayne@69: #else jpayne@69: static PyTypeObject *__Pyx_FetchCommonTypeFromSpec(PyObject *module, PyType_Spec *spec, PyObject *bases) { jpayne@69: PyObject *abi_module, *cached_type = NULL; jpayne@69: const char* object_name = strrchr(spec->name, '.'); jpayne@69: object_name = object_name ? object_name+1 : spec->name; jpayne@69: abi_module = __Pyx_FetchSharedCythonABIModule(); jpayne@69: if (!abi_module) return NULL; jpayne@69: cached_type = PyObject_GetAttrString(abi_module, object_name); jpayne@69: if (cached_type) { jpayne@69: Py_ssize_t basicsize; jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: PyObject *py_basicsize; jpayne@69: py_basicsize = PyObject_GetAttrString(cached_type, "__basicsize__"); jpayne@69: if (unlikely(!py_basicsize)) goto bad; jpayne@69: basicsize = PyLong_AsSsize_t(py_basicsize); jpayne@69: Py_DECREF(py_basicsize); jpayne@69: py_basicsize = 0; jpayne@69: if (unlikely(basicsize == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad; jpayne@69: #else jpayne@69: basicsize = likely(PyType_Check(cached_type)) ? ((PyTypeObject*) cached_type)->tp_basicsize : -1; jpayne@69: #endif jpayne@69: if (__Pyx_VerifyCachedType( jpayne@69: cached_type, jpayne@69: object_name, jpayne@69: basicsize, jpayne@69: spec->basicsize) < 0) { jpayne@69: goto bad; jpayne@69: } jpayne@69: goto done; jpayne@69: } jpayne@69: if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad; jpayne@69: PyErr_Clear(); jpayne@69: CYTHON_UNUSED_VAR(module); jpayne@69: cached_type = __Pyx_PyType_FromModuleAndSpec(abi_module, spec, bases); jpayne@69: if (unlikely(!cached_type)) goto bad; jpayne@69: if (unlikely(__Pyx_fix_up_extension_type_from_spec(spec, (PyTypeObject *) cached_type) < 0)) goto bad; jpayne@69: if (PyObject_SetAttrString(abi_module, object_name, cached_type) < 0) goto bad; jpayne@69: done: jpayne@69: Py_DECREF(abi_module); jpayne@69: assert(cached_type == NULL || PyType_Check(cached_type)); jpayne@69: return (PyTypeObject *) cached_type; jpayne@69: bad: jpayne@69: Py_XDECREF(cached_type); jpayne@69: cached_type = NULL; jpayne@69: goto done; jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* PyVectorcallFastCallDict */ jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: static PyObject *__Pyx_PyVectorcall_FastCallDict_kw(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw) jpayne@69: { jpayne@69: PyObject *res = NULL; jpayne@69: PyObject *kwnames; jpayne@69: PyObject **newargs; jpayne@69: PyObject **kwvalues; jpayne@69: Py_ssize_t i, pos; jpayne@69: size_t j; jpayne@69: PyObject *key, *value; jpayne@69: unsigned long keys_are_strings; jpayne@69: Py_ssize_t nkw = PyDict_GET_SIZE(kw); jpayne@69: newargs = (PyObject **)PyMem_Malloc((nargs + (size_t)nkw) * sizeof(args[0])); jpayne@69: if (unlikely(newargs == NULL)) { jpayne@69: PyErr_NoMemory(); jpayne@69: return NULL; jpayne@69: } jpayne@69: for (j = 0; j < nargs; j++) newargs[j] = args[j]; jpayne@69: kwnames = PyTuple_New(nkw); jpayne@69: if (unlikely(kwnames == NULL)) { jpayne@69: PyMem_Free(newargs); jpayne@69: return NULL; jpayne@69: } jpayne@69: kwvalues = newargs + nargs; jpayne@69: pos = i = 0; jpayne@69: keys_are_strings = Py_TPFLAGS_UNICODE_SUBCLASS; jpayne@69: while (PyDict_Next(kw, &pos, &key, &value)) { jpayne@69: keys_are_strings &= Py_TYPE(key)->tp_flags; jpayne@69: Py_INCREF(key); jpayne@69: Py_INCREF(value); jpayne@69: PyTuple_SET_ITEM(kwnames, i, key); jpayne@69: kwvalues[i] = value; jpayne@69: i++; jpayne@69: } jpayne@69: if (unlikely(!keys_are_strings)) { jpayne@69: PyErr_SetString(PyExc_TypeError, "keywords must be strings"); jpayne@69: goto cleanup; jpayne@69: } jpayne@69: res = vc(func, newargs, nargs, kwnames); jpayne@69: cleanup: jpayne@69: Py_DECREF(kwnames); jpayne@69: for (i = 0; i < nkw; i++) jpayne@69: Py_DECREF(kwvalues[i]); jpayne@69: PyMem_Free(newargs); jpayne@69: return res; jpayne@69: } jpayne@69: static CYTHON_INLINE PyObject *__Pyx_PyVectorcall_FastCallDict(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw) jpayne@69: { jpayne@69: if (likely(kw == NULL) || PyDict_GET_SIZE(kw) == 0) { jpayne@69: return vc(func, args, nargs, NULL); jpayne@69: } jpayne@69: return __Pyx_PyVectorcall_FastCallDict_kw(func, vc, args, nargs, kw); jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* CythonFunctionShared */ jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc) { jpayne@69: if (__Pyx_CyFunction_Check(func)) { jpayne@69: return PyCFunction_GetFunction(((__pyx_CyFunctionObject*)func)->func) == (PyCFunction) cfunc; jpayne@69: } else if (PyCFunction_Check(func)) { jpayne@69: return PyCFunction_GetFunction(func) == (PyCFunction) cfunc; jpayne@69: } jpayne@69: return 0; jpayne@69: } jpayne@69: #else jpayne@69: static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc) { jpayne@69: return __Pyx_CyOrPyCFunction_Check(func) && __Pyx_CyOrPyCFunction_GET_FUNCTION(func) == (PyCFunction) cfunc; jpayne@69: } jpayne@69: #endif jpayne@69: static CYTHON_INLINE void __Pyx__CyFunction_SetClassObj(__pyx_CyFunctionObject* f, PyObject* classobj) { jpayne@69: #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API jpayne@69: __Pyx_Py_XDECREF_SET( jpayne@69: __Pyx_CyFunction_GetClassObj(f), jpayne@69: ((classobj) ? __Pyx_NewRef(classobj) : NULL)); jpayne@69: #else jpayne@69: __Pyx_Py_XDECREF_SET( jpayne@69: ((PyCMethodObject *) (f))->mm_class, jpayne@69: (PyTypeObject*)((classobj) ? __Pyx_NewRef(classobj) : NULL)); jpayne@69: #endif jpayne@69: } jpayne@69: static PyObject * jpayne@69: __Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, void *closure) jpayne@69: { jpayne@69: CYTHON_UNUSED_VAR(closure); jpayne@69: if (unlikely(op->func_doc == NULL)) { jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: op->func_doc = PyObject_GetAttrString(op->func, "__doc__"); jpayne@69: if (unlikely(!op->func_doc)) return NULL; jpayne@69: #else jpayne@69: if (((PyCFunctionObject*)op)->m_ml->ml_doc) { jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: op->func_doc = PyUnicode_FromString(((PyCFunctionObject*)op)->m_ml->ml_doc); jpayne@69: #else jpayne@69: op->func_doc = PyString_FromString(((PyCFunctionObject*)op)->m_ml->ml_doc); jpayne@69: #endif jpayne@69: if (unlikely(op->func_doc == NULL)) jpayne@69: return NULL; jpayne@69: } else { jpayne@69: Py_INCREF(Py_None); jpayne@69: return Py_None; jpayne@69: } jpayne@69: #endif jpayne@69: } jpayne@69: Py_INCREF(op->func_doc); jpayne@69: return op->func_doc; jpayne@69: } jpayne@69: static int jpayne@69: __Pyx_CyFunction_set_doc(__pyx_CyFunctionObject *op, PyObject *value, void *context) jpayne@69: { jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: if (value == NULL) { jpayne@69: value = Py_None; jpayne@69: } jpayne@69: Py_INCREF(value); jpayne@69: __Pyx_Py_XDECREF_SET(op->func_doc, value); jpayne@69: return 0; jpayne@69: } jpayne@69: static PyObject * jpayne@69: __Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op, void *context) jpayne@69: { jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: if (unlikely(op->func_name == NULL)) { jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: op->func_name = PyObject_GetAttrString(op->func, "__name__"); jpayne@69: #elif PY_MAJOR_VERSION >= 3 jpayne@69: op->func_name = PyUnicode_InternFromString(((PyCFunctionObject*)op)->m_ml->ml_name); jpayne@69: #else jpayne@69: op->func_name = PyString_InternFromString(((PyCFunctionObject*)op)->m_ml->ml_name); jpayne@69: #endif jpayne@69: if (unlikely(op->func_name == NULL)) jpayne@69: return NULL; jpayne@69: } jpayne@69: Py_INCREF(op->func_name); jpayne@69: return op->func_name; jpayne@69: } jpayne@69: static int jpayne@69: __Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value, void *context) jpayne@69: { jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: if (unlikely(value == NULL || !PyUnicode_Check(value))) jpayne@69: #else jpayne@69: if (unlikely(value == NULL || !PyString_Check(value))) jpayne@69: #endif jpayne@69: { jpayne@69: PyErr_SetString(PyExc_TypeError, jpayne@69: "__name__ must be set to a string object"); jpayne@69: return -1; jpayne@69: } jpayne@69: Py_INCREF(value); jpayne@69: __Pyx_Py_XDECREF_SET(op->func_name, value); jpayne@69: return 0; jpayne@69: } jpayne@69: static PyObject * jpayne@69: __Pyx_CyFunction_get_qualname(__pyx_CyFunctionObject *op, void *context) jpayne@69: { jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: Py_INCREF(op->func_qualname); jpayne@69: return op->func_qualname; jpayne@69: } jpayne@69: static int jpayne@69: __Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject *op, PyObject *value, void *context) jpayne@69: { jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: if (unlikely(value == NULL || !PyUnicode_Check(value))) jpayne@69: #else jpayne@69: if (unlikely(value == NULL || !PyString_Check(value))) jpayne@69: #endif jpayne@69: { jpayne@69: PyErr_SetString(PyExc_TypeError, jpayne@69: "__qualname__ must be set to a string object"); jpayne@69: return -1; jpayne@69: } jpayne@69: Py_INCREF(value); jpayne@69: __Pyx_Py_XDECREF_SET(op->func_qualname, value); jpayne@69: return 0; jpayne@69: } jpayne@69: static PyObject * jpayne@69: __Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op, void *context) jpayne@69: { jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: if (unlikely(op->func_dict == NULL)) { jpayne@69: op->func_dict = PyDict_New(); jpayne@69: if (unlikely(op->func_dict == NULL)) jpayne@69: return NULL; jpayne@69: } jpayne@69: Py_INCREF(op->func_dict); jpayne@69: return op->func_dict; jpayne@69: } jpayne@69: static int jpayne@69: __Pyx_CyFunction_set_dict(__pyx_CyFunctionObject *op, PyObject *value, void *context) jpayne@69: { jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: if (unlikely(value == NULL)) { jpayne@69: PyErr_SetString(PyExc_TypeError, jpayne@69: "function's dictionary may not be deleted"); jpayne@69: return -1; jpayne@69: } jpayne@69: if (unlikely(!PyDict_Check(value))) { jpayne@69: PyErr_SetString(PyExc_TypeError, jpayne@69: "setting function's dictionary to a non-dict"); jpayne@69: return -1; jpayne@69: } jpayne@69: Py_INCREF(value); jpayne@69: __Pyx_Py_XDECREF_SET(op->func_dict, value); jpayne@69: return 0; jpayne@69: } jpayne@69: static PyObject * jpayne@69: __Pyx_CyFunction_get_globals(__pyx_CyFunctionObject *op, void *context) jpayne@69: { jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: Py_INCREF(op->func_globals); jpayne@69: return op->func_globals; jpayne@69: } jpayne@69: static PyObject * jpayne@69: __Pyx_CyFunction_get_closure(__pyx_CyFunctionObject *op, void *context) jpayne@69: { jpayne@69: CYTHON_UNUSED_VAR(op); jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: Py_INCREF(Py_None); jpayne@69: return Py_None; jpayne@69: } jpayne@69: static PyObject * jpayne@69: __Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op, void *context) jpayne@69: { jpayne@69: PyObject* result = (op->func_code) ? op->func_code : Py_None; jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: Py_INCREF(result); jpayne@69: return result; jpayne@69: } jpayne@69: static int jpayne@69: __Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject *op) { jpayne@69: int result = 0; jpayne@69: PyObject *res = op->defaults_getter((PyObject *) op); jpayne@69: if (unlikely(!res)) jpayne@69: return -1; jpayne@69: #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS jpayne@69: op->defaults_tuple = PyTuple_GET_ITEM(res, 0); jpayne@69: Py_INCREF(op->defaults_tuple); jpayne@69: op->defaults_kwdict = PyTuple_GET_ITEM(res, 1); jpayne@69: Py_INCREF(op->defaults_kwdict); jpayne@69: #else jpayne@69: op->defaults_tuple = __Pyx_PySequence_ITEM(res, 0); jpayne@69: if (unlikely(!op->defaults_tuple)) result = -1; jpayne@69: else { jpayne@69: op->defaults_kwdict = __Pyx_PySequence_ITEM(res, 1); jpayne@69: if (unlikely(!op->defaults_kwdict)) result = -1; jpayne@69: } jpayne@69: #endif jpayne@69: Py_DECREF(res); jpayne@69: return result; jpayne@69: } jpayne@69: static int jpayne@69: __Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject *op, PyObject* value, void *context) { jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: if (!value) { jpayne@69: value = Py_None; jpayne@69: } else if (unlikely(value != Py_None && !PyTuple_Check(value))) { jpayne@69: PyErr_SetString(PyExc_TypeError, jpayne@69: "__defaults__ must be set to a tuple object"); jpayne@69: return -1; jpayne@69: } jpayne@69: PyErr_WarnEx(PyExc_RuntimeWarning, "changes to cyfunction.__defaults__ will not " jpayne@69: "currently affect the values used in function calls", 1); jpayne@69: Py_INCREF(value); jpayne@69: __Pyx_Py_XDECREF_SET(op->defaults_tuple, value); jpayne@69: return 0; jpayne@69: } jpayne@69: static PyObject * jpayne@69: __Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op, void *context) { jpayne@69: PyObject* result = op->defaults_tuple; jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: if (unlikely(!result)) { jpayne@69: if (op->defaults_getter) { jpayne@69: if (unlikely(__Pyx_CyFunction_init_defaults(op) < 0)) return NULL; jpayne@69: result = op->defaults_tuple; jpayne@69: } else { jpayne@69: result = Py_None; jpayne@69: } jpayne@69: } jpayne@69: Py_INCREF(result); jpayne@69: return result; jpayne@69: } jpayne@69: static int jpayne@69: __Pyx_CyFunction_set_kwdefaults(__pyx_CyFunctionObject *op, PyObject* value, void *context) { jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: if (!value) { jpayne@69: value = Py_None; jpayne@69: } else if (unlikely(value != Py_None && !PyDict_Check(value))) { jpayne@69: PyErr_SetString(PyExc_TypeError, jpayne@69: "__kwdefaults__ must be set to a dict object"); jpayne@69: return -1; jpayne@69: } jpayne@69: PyErr_WarnEx(PyExc_RuntimeWarning, "changes to cyfunction.__kwdefaults__ will not " jpayne@69: "currently affect the values used in function calls", 1); jpayne@69: Py_INCREF(value); jpayne@69: __Pyx_Py_XDECREF_SET(op->defaults_kwdict, value); jpayne@69: return 0; jpayne@69: } jpayne@69: static PyObject * jpayne@69: __Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject *op, void *context) { jpayne@69: PyObject* result = op->defaults_kwdict; jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: if (unlikely(!result)) { jpayne@69: if (op->defaults_getter) { jpayne@69: if (unlikely(__Pyx_CyFunction_init_defaults(op) < 0)) return NULL; jpayne@69: result = op->defaults_kwdict; jpayne@69: } else { jpayne@69: result = Py_None; jpayne@69: } jpayne@69: } jpayne@69: Py_INCREF(result); jpayne@69: return result; jpayne@69: } jpayne@69: static int jpayne@69: __Pyx_CyFunction_set_annotations(__pyx_CyFunctionObject *op, PyObject* value, void *context) { jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: if (!value || value == Py_None) { jpayne@69: value = NULL; jpayne@69: } else if (unlikely(!PyDict_Check(value))) { jpayne@69: PyErr_SetString(PyExc_TypeError, jpayne@69: "__annotations__ must be set to a dict object"); jpayne@69: return -1; jpayne@69: } jpayne@69: Py_XINCREF(value); jpayne@69: __Pyx_Py_XDECREF_SET(op->func_annotations, value); jpayne@69: return 0; jpayne@69: } jpayne@69: static PyObject * jpayne@69: __Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject *op, void *context) { jpayne@69: PyObject* result = op->func_annotations; jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: if (unlikely(!result)) { jpayne@69: result = PyDict_New(); jpayne@69: if (unlikely(!result)) return NULL; jpayne@69: op->func_annotations = result; jpayne@69: } jpayne@69: Py_INCREF(result); jpayne@69: return result; jpayne@69: } jpayne@69: static PyObject * jpayne@69: __Pyx_CyFunction_get_is_coroutine(__pyx_CyFunctionObject *op, void *context) { jpayne@69: int is_coroutine; jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: if (op->func_is_coroutine) { jpayne@69: return __Pyx_NewRef(op->func_is_coroutine); jpayne@69: } jpayne@69: is_coroutine = op->flags & __Pyx_CYFUNCTION_COROUTINE; jpayne@69: #if PY_VERSION_HEX >= 0x03050000 jpayne@69: if (is_coroutine) { jpayne@69: PyObject *module, *fromlist, *marker = __pyx_n_s_is_coroutine; jpayne@69: fromlist = PyList_New(1); jpayne@69: if (unlikely(!fromlist)) return NULL; jpayne@69: Py_INCREF(marker); jpayne@69: #if CYTHON_ASSUME_SAFE_MACROS jpayne@69: PyList_SET_ITEM(fromlist, 0, marker); jpayne@69: #else jpayne@69: if (unlikely(PyList_SetItem(fromlist, 0, marker) < 0)) { jpayne@69: Py_DECREF(marker); jpayne@69: Py_DECREF(fromlist); jpayne@69: return NULL; jpayne@69: } jpayne@69: #endif jpayne@69: module = PyImport_ImportModuleLevelObject(__pyx_n_s_asyncio_coroutines, NULL, NULL, fromlist, 0); jpayne@69: Py_DECREF(fromlist); jpayne@69: if (unlikely(!module)) goto ignore; jpayne@69: op->func_is_coroutine = __Pyx_PyObject_GetAttrStr(module, marker); jpayne@69: Py_DECREF(module); jpayne@69: if (likely(op->func_is_coroutine)) { jpayne@69: return __Pyx_NewRef(op->func_is_coroutine); jpayne@69: } jpayne@69: ignore: jpayne@69: PyErr_Clear(); jpayne@69: } jpayne@69: #endif jpayne@69: op->func_is_coroutine = __Pyx_PyBool_FromLong(is_coroutine); jpayne@69: return __Pyx_NewRef(op->func_is_coroutine); jpayne@69: } jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: static PyObject * jpayne@69: __Pyx_CyFunction_get_module(__pyx_CyFunctionObject *op, void *context) { jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: return PyObject_GetAttrString(op->func, "__module__"); jpayne@69: } jpayne@69: static int jpayne@69: __Pyx_CyFunction_set_module(__pyx_CyFunctionObject *op, PyObject* value, void *context) { jpayne@69: CYTHON_UNUSED_VAR(context); jpayne@69: return PyObject_SetAttrString(op->func, "__module__", value); jpayne@69: } jpayne@69: #endif jpayne@69: static PyGetSetDef __pyx_CyFunction_getsets[] = { jpayne@69: {(char *) "func_doc", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, jpayne@69: {(char *) "__doc__", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, jpayne@69: {(char *) "func_name", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, jpayne@69: {(char *) "__name__", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, jpayne@69: {(char *) "__qualname__", (getter)__Pyx_CyFunction_get_qualname, (setter)__Pyx_CyFunction_set_qualname, 0, 0}, jpayne@69: {(char *) "func_dict", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0}, jpayne@69: {(char *) "__dict__", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0}, jpayne@69: {(char *) "func_globals", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, jpayne@69: {(char *) "__globals__", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, jpayne@69: {(char *) "func_closure", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0}, jpayne@69: {(char *) "__closure__", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0}, jpayne@69: {(char *) "func_code", (getter)__Pyx_CyFunction_get_code, 0, 0, 0}, jpayne@69: {(char *) "__code__", (getter)__Pyx_CyFunction_get_code, 0, 0, 0}, jpayne@69: {(char *) "func_defaults", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, jpayne@69: {(char *) "__defaults__", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, jpayne@69: {(char *) "__kwdefaults__", (getter)__Pyx_CyFunction_get_kwdefaults, (setter)__Pyx_CyFunction_set_kwdefaults, 0, 0}, jpayne@69: {(char *) "__annotations__", (getter)__Pyx_CyFunction_get_annotations, (setter)__Pyx_CyFunction_set_annotations, 0, 0}, jpayne@69: {(char *) "_is_coroutine", (getter)__Pyx_CyFunction_get_is_coroutine, 0, 0, 0}, jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: {"__module__", (getter)__Pyx_CyFunction_get_module, (setter)__Pyx_CyFunction_set_module, 0, 0}, jpayne@69: #endif jpayne@69: {0, 0, 0, 0, 0} jpayne@69: }; jpayne@69: static PyMemberDef __pyx_CyFunction_members[] = { jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: {(char *) "__module__", T_OBJECT, offsetof(PyCFunctionObject, m_module), 0, 0}, jpayne@69: #endif jpayne@69: #if CYTHON_USE_TYPE_SPECS jpayne@69: {(char *) "__dictoffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_dict), READONLY, 0}, jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: #if CYTHON_BACKPORT_VECTORCALL jpayne@69: {(char *) "__vectorcalloffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_vectorcall), READONLY, 0}, jpayne@69: #else jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: {(char *) "__vectorcalloffset__", T_PYSSIZET, offsetof(PyCFunctionObject, vectorcall), READONLY, 0}, jpayne@69: #endif jpayne@69: #endif jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX < 0x030500A0 || CYTHON_COMPILING_IN_LIMITED_API jpayne@69: {(char *) "__weaklistoffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_weakreflist), READONLY, 0}, jpayne@69: #else jpayne@69: {(char *) "__weaklistoffset__", T_PYSSIZET, offsetof(PyCFunctionObject, m_weakreflist), READONLY, 0}, jpayne@69: #endif jpayne@69: #endif jpayne@69: {0, 0, 0, 0, 0} jpayne@69: }; jpayne@69: static PyObject * jpayne@69: __Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, PyObject *args) jpayne@69: { jpayne@69: CYTHON_UNUSED_VAR(args); jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: Py_INCREF(m->func_qualname); jpayne@69: return m->func_qualname; jpayne@69: #else jpayne@69: return PyString_FromString(((PyCFunctionObject*)m)->m_ml->ml_name); jpayne@69: #endif jpayne@69: } jpayne@69: static PyMethodDef __pyx_CyFunction_methods[] = { jpayne@69: {"__reduce__", (PyCFunction)__Pyx_CyFunction_reduce, METH_VARARGS, 0}, jpayne@69: {0, 0, 0, 0} jpayne@69: }; jpayne@69: #if PY_VERSION_HEX < 0x030500A0 || CYTHON_COMPILING_IN_LIMITED_API jpayne@69: #define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func_weakreflist) jpayne@69: #else jpayne@69: #define __Pyx_CyFunction_weakreflist(cyfunc) (((PyCFunctionObject*)cyfunc)->m_weakreflist) jpayne@69: #endif jpayne@69: static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject *op, PyMethodDef *ml, int flags, PyObject* qualname, jpayne@69: PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) { jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: PyCFunctionObject *cf = (PyCFunctionObject*) op; jpayne@69: #endif jpayne@69: if (unlikely(op == NULL)) jpayne@69: return NULL; jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: op->func = PyCFunction_NewEx(ml, (PyObject*)op, module); jpayne@69: if (unlikely(!op->func)) return NULL; jpayne@69: #endif jpayne@69: op->flags = flags; jpayne@69: __Pyx_CyFunction_weakreflist(op) = NULL; jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: cf->m_ml = ml; jpayne@69: cf->m_self = (PyObject *) op; jpayne@69: #endif jpayne@69: Py_XINCREF(closure); jpayne@69: op->func_closure = closure; jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: Py_XINCREF(module); jpayne@69: cf->m_module = module; jpayne@69: #endif jpayne@69: op->func_dict = NULL; jpayne@69: op->func_name = NULL; jpayne@69: Py_INCREF(qualname); jpayne@69: op->func_qualname = qualname; jpayne@69: op->func_doc = NULL; jpayne@69: #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API jpayne@69: op->func_classobj = NULL; jpayne@69: #else jpayne@69: ((PyCMethodObject*)op)->mm_class = NULL; jpayne@69: #endif jpayne@69: op->func_globals = globals; jpayne@69: Py_INCREF(op->func_globals); jpayne@69: Py_XINCREF(code); jpayne@69: op->func_code = code; jpayne@69: op->defaults_pyobjects = 0; jpayne@69: op->defaults_size = 0; jpayne@69: op->defaults = NULL; jpayne@69: op->defaults_tuple = NULL; jpayne@69: op->defaults_kwdict = NULL; jpayne@69: op->defaults_getter = NULL; jpayne@69: op->func_annotations = NULL; jpayne@69: op->func_is_coroutine = NULL; jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: switch (ml->ml_flags & (METH_VARARGS | METH_FASTCALL | METH_NOARGS | METH_O | METH_KEYWORDS | METH_METHOD)) { jpayne@69: case METH_NOARGS: jpayne@69: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_NOARGS; jpayne@69: break; jpayne@69: case METH_O: jpayne@69: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_O; jpayne@69: break; jpayne@69: case METH_METHOD | METH_FASTCALL | METH_KEYWORDS: jpayne@69: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD; jpayne@69: break; jpayne@69: case METH_FASTCALL | METH_KEYWORDS: jpayne@69: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS; jpayne@69: break; jpayne@69: case METH_VARARGS | METH_KEYWORDS: jpayne@69: __Pyx_CyFunction_func_vectorcall(op) = NULL; jpayne@69: break; jpayne@69: default: jpayne@69: PyErr_SetString(PyExc_SystemError, "Bad call flags for CyFunction"); jpayne@69: Py_DECREF(op); jpayne@69: return NULL; jpayne@69: } jpayne@69: #endif jpayne@69: return (PyObject *) op; jpayne@69: } jpayne@69: static int jpayne@69: __Pyx_CyFunction_clear(__pyx_CyFunctionObject *m) jpayne@69: { jpayne@69: Py_CLEAR(m->func_closure); jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: Py_CLEAR(m->func); jpayne@69: #else jpayne@69: Py_CLEAR(((PyCFunctionObject*)m)->m_module); jpayne@69: #endif jpayne@69: Py_CLEAR(m->func_dict); jpayne@69: Py_CLEAR(m->func_name); jpayne@69: Py_CLEAR(m->func_qualname); jpayne@69: Py_CLEAR(m->func_doc); jpayne@69: Py_CLEAR(m->func_globals); jpayne@69: Py_CLEAR(m->func_code); jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: #if PY_VERSION_HEX < 0x030900B1 jpayne@69: Py_CLEAR(__Pyx_CyFunction_GetClassObj(m)); jpayne@69: #else jpayne@69: { jpayne@69: PyObject *cls = (PyObject*) ((PyCMethodObject *) (m))->mm_class; jpayne@69: ((PyCMethodObject *) (m))->mm_class = NULL; jpayne@69: Py_XDECREF(cls); jpayne@69: } jpayne@69: #endif jpayne@69: #endif jpayne@69: Py_CLEAR(m->defaults_tuple); jpayne@69: Py_CLEAR(m->defaults_kwdict); jpayne@69: Py_CLEAR(m->func_annotations); jpayne@69: Py_CLEAR(m->func_is_coroutine); jpayne@69: if (m->defaults) { jpayne@69: PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m); jpayne@69: int i; jpayne@69: for (i = 0; i < m->defaults_pyobjects; i++) jpayne@69: Py_XDECREF(pydefaults[i]); jpayne@69: PyObject_Free(m->defaults); jpayne@69: m->defaults = NULL; jpayne@69: } jpayne@69: return 0; jpayne@69: } jpayne@69: static void __Pyx__CyFunction_dealloc(__pyx_CyFunctionObject *m) jpayne@69: { jpayne@69: if (__Pyx_CyFunction_weakreflist(m) != NULL) jpayne@69: PyObject_ClearWeakRefs((PyObject *) m); jpayne@69: __Pyx_CyFunction_clear(m); jpayne@69: __Pyx_PyHeapTypeObject_GC_Del(m); jpayne@69: } jpayne@69: static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m) jpayne@69: { jpayne@69: PyObject_GC_UnTrack(m); jpayne@69: __Pyx__CyFunction_dealloc(m); jpayne@69: } jpayne@69: static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, void *arg) jpayne@69: { jpayne@69: Py_VISIT(m->func_closure); jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: Py_VISIT(m->func); jpayne@69: #else jpayne@69: Py_VISIT(((PyCFunctionObject*)m)->m_module); jpayne@69: #endif jpayne@69: Py_VISIT(m->func_dict); jpayne@69: Py_VISIT(m->func_name); jpayne@69: Py_VISIT(m->func_qualname); jpayne@69: Py_VISIT(m->func_doc); jpayne@69: Py_VISIT(m->func_globals); jpayne@69: Py_VISIT(m->func_code); jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: Py_VISIT(__Pyx_CyFunction_GetClassObj(m)); jpayne@69: #endif jpayne@69: Py_VISIT(m->defaults_tuple); jpayne@69: Py_VISIT(m->defaults_kwdict); jpayne@69: Py_VISIT(m->func_is_coroutine); jpayne@69: if (m->defaults) { jpayne@69: PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m); jpayne@69: int i; jpayne@69: for (i = 0; i < m->defaults_pyobjects; i++) jpayne@69: Py_VISIT(pydefaults[i]); jpayne@69: } jpayne@69: return 0; jpayne@69: } jpayne@69: static PyObject* jpayne@69: __Pyx_CyFunction_repr(__pyx_CyFunctionObject *op) jpayne@69: { jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: return PyUnicode_FromFormat("", jpayne@69: op->func_qualname, (void *)op); jpayne@69: #else jpayne@69: return PyString_FromFormat("", jpayne@69: PyString_AsString(op->func_qualname), (void *)op); jpayne@69: #endif jpayne@69: } jpayne@69: static PyObject * __Pyx_CyFunction_CallMethod(PyObject *func, PyObject *self, PyObject *arg, PyObject *kw) { jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: PyObject *f = ((__pyx_CyFunctionObject*)func)->func; jpayne@69: PyObject *py_name = NULL; jpayne@69: PyCFunction meth; jpayne@69: int flags; jpayne@69: meth = PyCFunction_GetFunction(f); jpayne@69: if (unlikely(!meth)) return NULL; jpayne@69: flags = PyCFunction_GetFlags(f); jpayne@69: if (unlikely(flags < 0)) return NULL; jpayne@69: #else jpayne@69: PyCFunctionObject* f = (PyCFunctionObject*)func; jpayne@69: PyCFunction meth = f->m_ml->ml_meth; jpayne@69: int flags = f->m_ml->ml_flags; jpayne@69: #endif jpayne@69: Py_ssize_t size; jpayne@69: switch (flags & (METH_VARARGS | METH_KEYWORDS | METH_NOARGS | METH_O)) { jpayne@69: case METH_VARARGS: jpayne@69: if (likely(kw == NULL || PyDict_Size(kw) == 0)) jpayne@69: return (*meth)(self, arg); jpayne@69: break; jpayne@69: case METH_VARARGS | METH_KEYWORDS: jpayne@69: return (*(PyCFunctionWithKeywords)(void*)meth)(self, arg, kw); jpayne@69: case METH_NOARGS: jpayne@69: if (likely(kw == NULL || PyDict_Size(kw) == 0)) { jpayne@69: #if CYTHON_ASSUME_SAFE_MACROS jpayne@69: size = PyTuple_GET_SIZE(arg); jpayne@69: #else jpayne@69: size = PyTuple_Size(arg); jpayne@69: if (unlikely(size < 0)) return NULL; jpayne@69: #endif jpayne@69: if (likely(size == 0)) jpayne@69: return (*meth)(self, NULL); jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: py_name = __Pyx_CyFunction_get_name((__pyx_CyFunctionObject*)func, NULL); jpayne@69: if (!py_name) return NULL; jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "%.200S() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@69: py_name, size); jpayne@69: Py_DECREF(py_name); jpayne@69: #else jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@69: f->m_ml->ml_name, size); jpayne@69: #endif jpayne@69: return NULL; jpayne@69: } jpayne@69: break; jpayne@69: case METH_O: jpayne@69: if (likely(kw == NULL || PyDict_Size(kw) == 0)) { jpayne@69: #if CYTHON_ASSUME_SAFE_MACROS jpayne@69: size = PyTuple_GET_SIZE(arg); jpayne@69: #else jpayne@69: size = PyTuple_Size(arg); jpayne@69: if (unlikely(size < 0)) return NULL; jpayne@69: #endif jpayne@69: if (likely(size == 1)) { jpayne@69: PyObject *result, *arg0; jpayne@69: #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS jpayne@69: arg0 = PyTuple_GET_ITEM(arg, 0); jpayne@69: #else jpayne@69: arg0 = __Pyx_PySequence_ITEM(arg, 0); if (unlikely(!arg0)) return NULL; jpayne@69: #endif jpayne@69: result = (*meth)(self, arg0); jpayne@69: #if !(CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS) jpayne@69: Py_DECREF(arg0); jpayne@69: #endif jpayne@69: return result; jpayne@69: } jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: py_name = __Pyx_CyFunction_get_name((__pyx_CyFunctionObject*)func, NULL); jpayne@69: if (!py_name) return NULL; jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "%.200S() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@69: py_name, size); jpayne@69: Py_DECREF(py_name); jpayne@69: #else jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@69: f->m_ml->ml_name, size); jpayne@69: #endif jpayne@69: return NULL; jpayne@69: } jpayne@69: break; jpayne@69: default: jpayne@69: PyErr_SetString(PyExc_SystemError, "Bad call flags for CyFunction"); jpayne@69: return NULL; jpayne@69: } jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: py_name = __Pyx_CyFunction_get_name((__pyx_CyFunctionObject*)func, NULL); jpayne@69: if (!py_name) return NULL; jpayne@69: PyErr_Format(PyExc_TypeError, "%.200S() takes no keyword arguments", jpayne@69: py_name); jpayne@69: Py_DECREF(py_name); jpayne@69: #else jpayne@69: PyErr_Format(PyExc_TypeError, "%.200s() takes no keyword arguments", jpayne@69: f->m_ml->ml_name); jpayne@69: #endif jpayne@69: return NULL; jpayne@69: } jpayne@69: static CYTHON_INLINE PyObject *__Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) { jpayne@69: PyObject *self, *result; jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: self = PyCFunction_GetSelf(((__pyx_CyFunctionObject*)func)->func); jpayne@69: if (unlikely(!self) && PyErr_Occurred()) return NULL; jpayne@69: #else jpayne@69: self = ((PyCFunctionObject*)func)->m_self; jpayne@69: #endif jpayne@69: result = __Pyx_CyFunction_CallMethod(func, self, arg, kw); jpayne@69: return result; jpayne@69: } jpayne@69: static PyObject *__Pyx_CyFunction_CallAsMethod(PyObject *func, PyObject *args, PyObject *kw) { jpayne@69: PyObject *result; jpayne@69: __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *) func; jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: __pyx_vectorcallfunc vc = __Pyx_CyFunction_func_vectorcall(cyfunc); jpayne@69: if (vc) { jpayne@69: #if CYTHON_ASSUME_SAFE_MACROS jpayne@69: return __Pyx_PyVectorcall_FastCallDict(func, vc, &PyTuple_GET_ITEM(args, 0), (size_t)PyTuple_GET_SIZE(args), kw); jpayne@69: #else jpayne@69: (void) &__Pyx_PyVectorcall_FastCallDict; jpayne@69: return PyVectorcall_Call(func, args, kw); jpayne@69: #endif jpayne@69: } jpayne@69: #endif jpayne@69: if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) { jpayne@69: Py_ssize_t argc; jpayne@69: PyObject *new_args; jpayne@69: PyObject *self; jpayne@69: #if CYTHON_ASSUME_SAFE_MACROS jpayne@69: argc = PyTuple_GET_SIZE(args); jpayne@69: #else jpayne@69: argc = PyTuple_Size(args); jpayne@69: if (unlikely(!argc) < 0) return NULL; jpayne@69: #endif jpayne@69: new_args = PyTuple_GetSlice(args, 1, argc); jpayne@69: if (unlikely(!new_args)) jpayne@69: return NULL; jpayne@69: self = PyTuple_GetItem(args, 0); jpayne@69: if (unlikely(!self)) { jpayne@69: Py_DECREF(new_args); jpayne@69: #if PY_MAJOR_VERSION > 2 jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "unbound method %.200S() needs an argument", jpayne@69: cyfunc->func_qualname); jpayne@69: #else jpayne@69: PyErr_SetString(PyExc_TypeError, jpayne@69: "unbound method needs an argument"); jpayne@69: #endif jpayne@69: return NULL; jpayne@69: } jpayne@69: result = __Pyx_CyFunction_CallMethod(func, self, new_args, kw); jpayne@69: Py_DECREF(new_args); jpayne@69: } else { jpayne@69: result = __Pyx_CyFunction_Call(func, args, kw); jpayne@69: } jpayne@69: return result; jpayne@69: } jpayne@69: #if CYTHON_METH_FASTCALL jpayne@69: static CYTHON_INLINE int __Pyx_CyFunction_Vectorcall_CheckArgs(__pyx_CyFunctionObject *cyfunc, Py_ssize_t nargs, PyObject *kwnames) jpayne@69: { jpayne@69: int ret = 0; jpayne@69: if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) { jpayne@69: if (unlikely(nargs < 1)) { jpayne@69: PyErr_Format(PyExc_TypeError, "%.200s() needs an argument", jpayne@69: ((PyCFunctionObject*)cyfunc)->m_ml->ml_name); jpayne@69: return -1; jpayne@69: } jpayne@69: ret = 1; jpayne@69: } jpayne@69: if (unlikely(kwnames) && unlikely(PyTuple_GET_SIZE(kwnames))) { jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "%.200s() takes no keyword arguments", ((PyCFunctionObject*)cyfunc)->m_ml->ml_name); jpayne@69: return -1; jpayne@69: } jpayne@69: return ret; jpayne@69: } jpayne@69: static PyObject * __Pyx_CyFunction_Vectorcall_NOARGS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) jpayne@69: { jpayne@69: __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; jpayne@69: PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; jpayne@69: #if CYTHON_BACKPORT_VECTORCALL jpayne@69: Py_ssize_t nargs = (Py_ssize_t)nargsf; jpayne@69: #else jpayne@69: Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); jpayne@69: #endif jpayne@69: PyObject *self; jpayne@69: switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, kwnames)) { jpayne@69: case 1: jpayne@69: self = args[0]; jpayne@69: args += 1; jpayne@69: nargs -= 1; jpayne@69: break; jpayne@69: case 0: jpayne@69: self = ((PyCFunctionObject*)cyfunc)->m_self; jpayne@69: break; jpayne@69: default: jpayne@69: return NULL; jpayne@69: } jpayne@69: if (unlikely(nargs != 0)) { jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@69: def->ml_name, nargs); jpayne@69: return NULL; jpayne@69: } jpayne@69: return def->ml_meth(self, NULL); jpayne@69: } jpayne@69: static PyObject * __Pyx_CyFunction_Vectorcall_O(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) jpayne@69: { jpayne@69: __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; jpayne@69: PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; jpayne@69: #if CYTHON_BACKPORT_VECTORCALL jpayne@69: Py_ssize_t nargs = (Py_ssize_t)nargsf; jpayne@69: #else jpayne@69: Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); jpayne@69: #endif jpayne@69: PyObject *self; jpayne@69: switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, kwnames)) { jpayne@69: case 1: jpayne@69: self = args[0]; jpayne@69: args += 1; jpayne@69: nargs -= 1; jpayne@69: break; jpayne@69: case 0: jpayne@69: self = ((PyCFunctionObject*)cyfunc)->m_self; jpayne@69: break; jpayne@69: default: jpayne@69: return NULL; jpayne@69: } jpayne@69: if (unlikely(nargs != 1)) { jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@69: def->ml_name, nargs); jpayne@69: return NULL; jpayne@69: } jpayne@69: return def->ml_meth(self, args[0]); jpayne@69: } jpayne@69: static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) jpayne@69: { jpayne@69: __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; jpayne@69: PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; jpayne@69: #if CYTHON_BACKPORT_VECTORCALL jpayne@69: Py_ssize_t nargs = (Py_ssize_t)nargsf; jpayne@69: #else jpayne@69: Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); jpayne@69: #endif jpayne@69: PyObject *self; jpayne@69: switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, NULL)) { jpayne@69: case 1: jpayne@69: self = args[0]; jpayne@69: args += 1; jpayne@69: nargs -= 1; jpayne@69: break; jpayne@69: case 0: jpayne@69: self = ((PyCFunctionObject*)cyfunc)->m_self; jpayne@69: break; jpayne@69: default: jpayne@69: return NULL; jpayne@69: } jpayne@69: return ((__Pyx_PyCFunctionFastWithKeywords)(void(*)(void))def->ml_meth)(self, args, nargs, kwnames); jpayne@69: } jpayne@69: static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) jpayne@69: { jpayne@69: __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; jpayne@69: PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; jpayne@69: PyTypeObject *cls = (PyTypeObject *) __Pyx_CyFunction_GetClassObj(cyfunc); jpayne@69: #if CYTHON_BACKPORT_VECTORCALL jpayne@69: Py_ssize_t nargs = (Py_ssize_t)nargsf; jpayne@69: #else jpayne@69: Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); jpayne@69: #endif jpayne@69: PyObject *self; jpayne@69: switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, NULL)) { jpayne@69: case 1: jpayne@69: self = args[0]; jpayne@69: args += 1; jpayne@69: nargs -= 1; jpayne@69: break; jpayne@69: case 0: jpayne@69: self = ((PyCFunctionObject*)cyfunc)->m_self; jpayne@69: break; jpayne@69: default: jpayne@69: return NULL; jpayne@69: } jpayne@69: return ((__Pyx_PyCMethod)(void(*)(void))def->ml_meth)(self, cls, args, (size_t)nargs, kwnames); jpayne@69: } jpayne@69: #endif jpayne@69: #if CYTHON_USE_TYPE_SPECS jpayne@69: static PyType_Slot __pyx_CyFunctionType_slots[] = { jpayne@69: {Py_tp_dealloc, (void *)__Pyx_CyFunction_dealloc}, jpayne@69: {Py_tp_repr, (void *)__Pyx_CyFunction_repr}, jpayne@69: {Py_tp_call, (void *)__Pyx_CyFunction_CallAsMethod}, jpayne@69: {Py_tp_traverse, (void *)__Pyx_CyFunction_traverse}, jpayne@69: {Py_tp_clear, (void *)__Pyx_CyFunction_clear}, jpayne@69: {Py_tp_methods, (void *)__pyx_CyFunction_methods}, jpayne@69: {Py_tp_members, (void *)__pyx_CyFunction_members}, jpayne@69: {Py_tp_getset, (void *)__pyx_CyFunction_getsets}, jpayne@69: {Py_tp_descr_get, (void *)__Pyx_PyMethod_New}, jpayne@69: {0, 0}, jpayne@69: }; jpayne@69: static PyType_Spec __pyx_CyFunctionType_spec = { jpayne@69: __PYX_TYPE_MODULE_PREFIX "cython_function_or_method", jpayne@69: sizeof(__pyx_CyFunctionObject), jpayne@69: 0, jpayne@69: #ifdef Py_TPFLAGS_METHOD_DESCRIPTOR jpayne@69: Py_TPFLAGS_METHOD_DESCRIPTOR | jpayne@69: #endif jpayne@69: #if (defined(_Py_TPFLAGS_HAVE_VECTORCALL) && CYTHON_METH_FASTCALL) jpayne@69: _Py_TPFLAGS_HAVE_VECTORCALL | jpayne@69: #endif jpayne@69: Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC | Py_TPFLAGS_BASETYPE, jpayne@69: __pyx_CyFunctionType_slots jpayne@69: }; jpayne@69: #else jpayne@69: static PyTypeObject __pyx_CyFunctionType_type = { jpayne@69: PyVarObject_HEAD_INIT(0, 0) jpayne@69: __PYX_TYPE_MODULE_PREFIX "cython_function_or_method", jpayne@69: sizeof(__pyx_CyFunctionObject), jpayne@69: 0, jpayne@69: (destructor) __Pyx_CyFunction_dealloc, jpayne@69: #if !CYTHON_METH_FASTCALL jpayne@69: 0, jpayne@69: #elif CYTHON_BACKPORT_VECTORCALL jpayne@69: (printfunc)offsetof(__pyx_CyFunctionObject, func_vectorcall), jpayne@69: #else jpayne@69: offsetof(PyCFunctionObject, vectorcall), jpayne@69: #endif jpayne@69: 0, jpayne@69: 0, jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: 0, jpayne@69: #else jpayne@69: 0, jpayne@69: #endif jpayne@69: (reprfunc) __Pyx_CyFunction_repr, jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: __Pyx_CyFunction_CallAsMethod, jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: #ifdef Py_TPFLAGS_METHOD_DESCRIPTOR jpayne@69: Py_TPFLAGS_METHOD_DESCRIPTOR | jpayne@69: #endif jpayne@69: #if defined(_Py_TPFLAGS_HAVE_VECTORCALL) && CYTHON_METH_FASTCALL jpayne@69: _Py_TPFLAGS_HAVE_VECTORCALL | jpayne@69: #endif jpayne@69: Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC | Py_TPFLAGS_BASETYPE, jpayne@69: 0, jpayne@69: (traverseproc) __Pyx_CyFunction_traverse, jpayne@69: (inquiry) __Pyx_CyFunction_clear, jpayne@69: 0, jpayne@69: #if PY_VERSION_HEX < 0x030500A0 jpayne@69: offsetof(__pyx_CyFunctionObject, func_weakreflist), jpayne@69: #else jpayne@69: offsetof(PyCFunctionObject, m_weakreflist), jpayne@69: #endif jpayne@69: 0, jpayne@69: 0, jpayne@69: __pyx_CyFunction_methods, jpayne@69: __pyx_CyFunction_members, jpayne@69: __pyx_CyFunction_getsets, jpayne@69: 0, jpayne@69: 0, jpayne@69: __Pyx_PyMethod_New, jpayne@69: 0, jpayne@69: offsetof(__pyx_CyFunctionObject, func_dict), jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: #if PY_VERSION_HEX >= 0x030400a1 jpayne@69: 0, jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) jpayne@69: 0, jpayne@69: #endif jpayne@69: #if __PYX_NEED_TP_PRINT_SLOT jpayne@69: 0, jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX >= 0x030C0000 jpayne@69: 0, jpayne@69: #endif jpayne@69: #if PY_VERSION_HEX >= 0x030d00A4 jpayne@69: 0, jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 jpayne@69: 0, jpayne@69: #endif jpayne@69: }; jpayne@69: #endif jpayne@69: static int __pyx_CyFunction_init(PyObject *module) { jpayne@69: #if CYTHON_USE_TYPE_SPECS jpayne@69: __pyx_CyFunctionType = __Pyx_FetchCommonTypeFromSpec(module, &__pyx_CyFunctionType_spec, NULL); jpayne@69: #else jpayne@69: CYTHON_UNUSED_VAR(module); jpayne@69: __pyx_CyFunctionType = __Pyx_FetchCommonType(&__pyx_CyFunctionType_type); jpayne@69: #endif jpayne@69: if (unlikely(__pyx_CyFunctionType == NULL)) { jpayne@69: return -1; jpayne@69: } jpayne@69: return 0; jpayne@69: } jpayne@69: static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects) { jpayne@69: __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; jpayne@69: m->defaults = PyObject_Malloc(size); jpayne@69: if (unlikely(!m->defaults)) jpayne@69: return PyErr_NoMemory(); jpayne@69: memset(m->defaults, 0, size); jpayne@69: m->defaults_pyobjects = pyobjects; jpayne@69: m->defaults_size = size; jpayne@69: return m->defaults; jpayne@69: } jpayne@69: static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) { jpayne@69: __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; jpayne@69: m->defaults_tuple = tuple; jpayne@69: Py_INCREF(tuple); jpayne@69: } jpayne@69: static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *func, PyObject *dict) { jpayne@69: __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; jpayne@69: m->defaults_kwdict = dict; jpayne@69: Py_INCREF(dict); jpayne@69: } jpayne@69: static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, PyObject *dict) { jpayne@69: __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; jpayne@69: m->func_annotations = dict; jpayne@69: Py_INCREF(dict); jpayne@69: } jpayne@69: jpayne@69: /* CythonFunction */ jpayne@69: static PyObject *__Pyx_CyFunction_New(PyMethodDef *ml, int flags, PyObject* qualname, jpayne@69: PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) { jpayne@69: PyObject *op = __Pyx_CyFunction_Init( jpayne@69: PyObject_GC_New(__pyx_CyFunctionObject, __pyx_CyFunctionType), jpayne@69: ml, flags, qualname, closure, module, globals, code jpayne@69: ); jpayne@69: if (likely(op)) { jpayne@69: PyObject_GC_Track(op); jpayne@69: } jpayne@69: return op; jpayne@69: } jpayne@69: jpayne@69: /* PyDictVersioning */ jpayne@69: #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS jpayne@69: static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj) { jpayne@69: PyObject *dict = Py_TYPE(obj)->tp_dict; jpayne@69: return likely(dict) ? __PYX_GET_DICT_VERSION(dict) : 0; jpayne@69: } jpayne@69: static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj) { jpayne@69: PyObject **dictptr = NULL; jpayne@69: Py_ssize_t offset = Py_TYPE(obj)->tp_dictoffset; jpayne@69: if (offset) { jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON jpayne@69: dictptr = (likely(offset > 0)) ? (PyObject **) ((char *)obj + offset) : _PyObject_GetDictPtr(obj); jpayne@69: #else jpayne@69: dictptr = _PyObject_GetDictPtr(obj); jpayne@69: #endif jpayne@69: } jpayne@69: return (dictptr && *dictptr) ? __PYX_GET_DICT_VERSION(*dictptr) : 0; jpayne@69: } jpayne@69: static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version) { jpayne@69: PyObject *dict = Py_TYPE(obj)->tp_dict; jpayne@69: if (unlikely(!dict) || unlikely(tp_dict_version != __PYX_GET_DICT_VERSION(dict))) jpayne@69: return 0; jpayne@69: return obj_dict_version == __Pyx_get_object_dict_version(obj); jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* CLineInTraceback */ jpayne@69: #ifndef CYTHON_CLINE_IN_TRACEBACK jpayne@69: static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line) { jpayne@69: PyObject *use_cline; jpayne@69: PyObject *ptype, *pvalue, *ptraceback; jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON jpayne@69: PyObject **cython_runtime_dict; jpayne@69: #endif jpayne@69: CYTHON_MAYBE_UNUSED_VAR(tstate); jpayne@69: if (unlikely(!__pyx_cython_runtime)) { jpayne@69: return c_line; jpayne@69: } jpayne@69: __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback); jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON jpayne@69: cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime); jpayne@69: if (likely(cython_runtime_dict)) { jpayne@69: __PYX_PY_DICT_LOOKUP_IF_MODIFIED( jpayne@69: use_cline, *cython_runtime_dict, jpayne@69: __Pyx_PyDict_GetItemStr(*cython_runtime_dict, __pyx_n_s_cline_in_traceback)) jpayne@69: } else jpayne@69: #endif jpayne@69: { jpayne@69: PyObject *use_cline_obj = __Pyx_PyObject_GetAttrStrNoError(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback); jpayne@69: if (use_cline_obj) { jpayne@69: use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True; jpayne@69: Py_DECREF(use_cline_obj); jpayne@69: } else { jpayne@69: PyErr_Clear(); jpayne@69: use_cline = NULL; jpayne@69: } jpayne@69: } jpayne@69: if (!use_cline) { jpayne@69: c_line = 0; jpayne@69: (void) PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False); jpayne@69: } jpayne@69: else if (use_cline == Py_False || (use_cline != Py_True && PyObject_Not(use_cline) != 0)) { jpayne@69: c_line = 0; jpayne@69: } jpayne@69: __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback); jpayne@69: return c_line; jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* CodeObjectCache */ jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { jpayne@69: int start = 0, mid = 0, end = count - 1; jpayne@69: if (end >= 0 && code_line > entries[end].code_line) { jpayne@69: return count; jpayne@69: } jpayne@69: while (start < end) { jpayne@69: mid = start + (end - start) / 2; jpayne@69: if (code_line < entries[mid].code_line) { jpayne@69: end = mid; jpayne@69: } else if (code_line > entries[mid].code_line) { jpayne@69: start = mid + 1; jpayne@69: } else { jpayne@69: return mid; jpayne@69: } jpayne@69: } jpayne@69: if (code_line <= entries[mid].code_line) { jpayne@69: return mid; jpayne@69: } else { jpayne@69: return mid + 1; jpayne@69: } jpayne@69: } jpayne@69: static PyCodeObject *__pyx_find_code_object(int code_line) { jpayne@69: PyCodeObject* code_object; jpayne@69: int pos; jpayne@69: if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { jpayne@69: return NULL; jpayne@69: } jpayne@69: pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); jpayne@69: if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { jpayne@69: return NULL; jpayne@69: } jpayne@69: code_object = __pyx_code_cache.entries[pos].code_object; jpayne@69: Py_INCREF(code_object); jpayne@69: return code_object; jpayne@69: } jpayne@69: static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { jpayne@69: int pos, i; jpayne@69: __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; jpayne@69: if (unlikely(!code_line)) { jpayne@69: return; jpayne@69: } jpayne@69: if (unlikely(!entries)) { jpayne@69: entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); jpayne@69: if (likely(entries)) { jpayne@69: __pyx_code_cache.entries = entries; jpayne@69: __pyx_code_cache.max_count = 64; jpayne@69: __pyx_code_cache.count = 1; jpayne@69: entries[0].code_line = code_line; jpayne@69: entries[0].code_object = code_object; jpayne@69: Py_INCREF(code_object); jpayne@69: } jpayne@69: return; jpayne@69: } jpayne@69: pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); jpayne@69: if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { jpayne@69: PyCodeObject* tmp = entries[pos].code_object; jpayne@69: entries[pos].code_object = code_object; jpayne@69: Py_DECREF(tmp); jpayne@69: return; jpayne@69: } jpayne@69: if (__pyx_code_cache.count == __pyx_code_cache.max_count) { jpayne@69: int new_max = __pyx_code_cache.max_count + 64; jpayne@69: entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( jpayne@69: __pyx_code_cache.entries, ((size_t)new_max) * sizeof(__Pyx_CodeObjectCacheEntry)); jpayne@69: if (unlikely(!entries)) { jpayne@69: return; jpayne@69: } jpayne@69: __pyx_code_cache.entries = entries; jpayne@69: __pyx_code_cache.max_count = new_max; jpayne@69: } jpayne@69: for (i=__pyx_code_cache.count; i>pos; i--) { jpayne@69: entries[i] = entries[i-1]; jpayne@69: } jpayne@69: entries[pos].code_line = code_line; jpayne@69: entries[pos].code_object = code_object; jpayne@69: __pyx_code_cache.count++; jpayne@69: Py_INCREF(code_object); jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* AddTraceback */ jpayne@69: #include "compile.h" jpayne@69: #include "frameobject.h" jpayne@69: #include "traceback.h" jpayne@69: #if PY_VERSION_HEX >= 0x030b00a6 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: #ifndef Py_BUILD_CORE jpayne@69: #define Py_BUILD_CORE 1 jpayne@69: #endif jpayne@69: #include "internal/pycore_frame.h" jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: static PyObject *__Pyx_PyCode_Replace_For_AddTraceback(PyObject *code, PyObject *scratch_dict, jpayne@69: PyObject *firstlineno, PyObject *name) { jpayne@69: PyObject *replace = NULL; jpayne@69: if (unlikely(PyDict_SetItemString(scratch_dict, "co_firstlineno", firstlineno))) return NULL; jpayne@69: if (unlikely(PyDict_SetItemString(scratch_dict, "co_name", name))) return NULL; jpayne@69: replace = PyObject_GetAttrString(code, "replace"); jpayne@69: if (likely(replace)) { jpayne@69: PyObject *result; jpayne@69: result = PyObject_Call(replace, __pyx_empty_tuple, scratch_dict); jpayne@69: Py_DECREF(replace); jpayne@69: return result; jpayne@69: } jpayne@69: PyErr_Clear(); jpayne@69: #if __PYX_LIMITED_VERSION_HEX < 0x030780000 jpayne@69: { jpayne@69: PyObject *compiled = NULL, *result = NULL; jpayne@69: if (unlikely(PyDict_SetItemString(scratch_dict, "code", code))) return NULL; jpayne@69: if (unlikely(PyDict_SetItemString(scratch_dict, "type", (PyObject*)(&PyType_Type)))) return NULL; jpayne@69: compiled = Py_CompileString( jpayne@69: "out = type(code)(\n" jpayne@69: " code.co_argcount, code.co_kwonlyargcount, code.co_nlocals, code.co_stacksize,\n" jpayne@69: " code.co_flags, code.co_code, code.co_consts, code.co_names,\n" jpayne@69: " code.co_varnames, code.co_filename, co_name, co_firstlineno,\n" jpayne@69: " code.co_lnotab)\n", "", Py_file_input); jpayne@69: if (!compiled) return NULL; jpayne@69: result = PyEval_EvalCode(compiled, scratch_dict, scratch_dict); jpayne@69: Py_DECREF(compiled); jpayne@69: if (!result) PyErr_Print(); jpayne@69: Py_DECREF(result); jpayne@69: result = PyDict_GetItemString(scratch_dict, "out"); jpayne@69: if (result) Py_INCREF(result); jpayne@69: return result; jpayne@69: } jpayne@69: #else jpayne@69: return NULL; jpayne@69: #endif jpayne@69: } jpayne@69: static void __Pyx_AddTraceback(const char *funcname, int c_line, jpayne@69: int py_line, const char *filename) { jpayne@69: PyObject *code_object = NULL, *py_py_line = NULL, *py_funcname = NULL, *dict = NULL; jpayne@69: PyObject *replace = NULL, *getframe = NULL, *frame = NULL; jpayne@69: PyObject *exc_type, *exc_value, *exc_traceback; jpayne@69: int success = 0; jpayne@69: if (c_line) { jpayne@69: (void) __pyx_cfilenm; jpayne@69: (void) __Pyx_CLineForTraceback(__Pyx_PyThreadState_Current, c_line); jpayne@69: } jpayne@69: PyErr_Fetch(&exc_type, &exc_value, &exc_traceback); jpayne@69: code_object = Py_CompileString("_getframe()", filename, Py_eval_input); jpayne@69: if (unlikely(!code_object)) goto bad; jpayne@69: py_py_line = PyLong_FromLong(py_line); jpayne@69: if (unlikely(!py_py_line)) goto bad; jpayne@69: py_funcname = PyUnicode_FromString(funcname); jpayne@69: if (unlikely(!py_funcname)) goto bad; jpayne@69: dict = PyDict_New(); jpayne@69: if (unlikely(!dict)) goto bad; jpayne@69: { jpayne@69: PyObject *old_code_object = code_object; jpayne@69: code_object = __Pyx_PyCode_Replace_For_AddTraceback(code_object, dict, py_py_line, py_funcname); jpayne@69: Py_DECREF(old_code_object); jpayne@69: } jpayne@69: if (unlikely(!code_object)) goto bad; jpayne@69: getframe = PySys_GetObject("_getframe"); jpayne@69: if (unlikely(!getframe)) goto bad; jpayne@69: if (unlikely(PyDict_SetItemString(dict, "_getframe", getframe))) goto bad; jpayne@69: frame = PyEval_EvalCode(code_object, dict, dict); jpayne@69: if (unlikely(!frame) || frame == Py_None) goto bad; jpayne@69: success = 1; jpayne@69: bad: jpayne@69: PyErr_Restore(exc_type, exc_value, exc_traceback); jpayne@69: Py_XDECREF(code_object); jpayne@69: Py_XDECREF(py_py_line); jpayne@69: Py_XDECREF(py_funcname); jpayne@69: Py_XDECREF(dict); jpayne@69: Py_XDECREF(replace); jpayne@69: if (success) { jpayne@69: PyTraceBack_Here( jpayne@69: (struct _frame*)frame); jpayne@69: } jpayne@69: Py_XDECREF(frame); jpayne@69: } jpayne@69: #else jpayne@69: static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( jpayne@69: const char *funcname, int c_line, jpayne@69: int py_line, const char *filename) { jpayne@69: PyCodeObject *py_code = NULL; jpayne@69: PyObject *py_funcname = NULL; jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: PyObject *py_srcfile = NULL; jpayne@69: py_srcfile = PyString_FromString(filename); jpayne@69: if (!py_srcfile) goto bad; jpayne@69: #endif jpayne@69: if (c_line) { jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); jpayne@69: if (!py_funcname) goto bad; jpayne@69: #else jpayne@69: py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); jpayne@69: if (!py_funcname) goto bad; jpayne@69: funcname = PyUnicode_AsUTF8(py_funcname); jpayne@69: if (!funcname) goto bad; jpayne@69: #endif jpayne@69: } jpayne@69: else { jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: py_funcname = PyString_FromString(funcname); jpayne@69: if (!py_funcname) goto bad; jpayne@69: #endif jpayne@69: } jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: py_code = __Pyx_PyCode_New( jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: 0, jpayne@69: __pyx_empty_bytes, /*PyObject *code,*/ jpayne@69: __pyx_empty_tuple, /*PyObject *consts,*/ jpayne@69: __pyx_empty_tuple, /*PyObject *names,*/ jpayne@69: __pyx_empty_tuple, /*PyObject *varnames,*/ jpayne@69: __pyx_empty_tuple, /*PyObject *freevars,*/ jpayne@69: __pyx_empty_tuple, /*PyObject *cellvars,*/ jpayne@69: py_srcfile, /*PyObject *filename,*/ jpayne@69: py_funcname, /*PyObject *name,*/ jpayne@69: py_line, jpayne@69: __pyx_empty_bytes /*PyObject *lnotab*/ jpayne@69: ); jpayne@69: Py_DECREF(py_srcfile); jpayne@69: #else jpayne@69: py_code = PyCode_NewEmpty(filename, funcname, py_line); jpayne@69: #endif jpayne@69: Py_XDECREF(py_funcname); jpayne@69: return py_code; jpayne@69: bad: jpayne@69: Py_XDECREF(py_funcname); jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: Py_XDECREF(py_srcfile); jpayne@69: #endif jpayne@69: return NULL; jpayne@69: } jpayne@69: static void __Pyx_AddTraceback(const char *funcname, int c_line, jpayne@69: int py_line, const char *filename) { jpayne@69: PyCodeObject *py_code = 0; jpayne@69: PyFrameObject *py_frame = 0; jpayne@69: PyThreadState *tstate = __Pyx_PyThreadState_Current; jpayne@69: PyObject *ptype, *pvalue, *ptraceback; jpayne@69: if (c_line) { jpayne@69: c_line = __Pyx_CLineForTraceback(tstate, c_line); jpayne@69: } jpayne@69: py_code = __pyx_find_code_object(c_line ? -c_line : py_line); jpayne@69: if (!py_code) { jpayne@69: __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback); jpayne@69: py_code = __Pyx_CreateCodeObjectForTraceback( jpayne@69: funcname, c_line, py_line, filename); jpayne@69: if (!py_code) { jpayne@69: /* If the code object creation fails, then we should clear the jpayne@69: fetched exception references and propagate the new exception */ jpayne@69: Py_XDECREF(ptype); jpayne@69: Py_XDECREF(pvalue); jpayne@69: Py_XDECREF(ptraceback); jpayne@69: goto bad; jpayne@69: } jpayne@69: __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback); jpayne@69: __pyx_insert_code_object(c_line ? -c_line : py_line, py_code); jpayne@69: } jpayne@69: py_frame = PyFrame_New( jpayne@69: tstate, /*PyThreadState *tstate,*/ jpayne@69: py_code, /*PyCodeObject *code,*/ jpayne@69: __pyx_d, /*PyObject *globals,*/ jpayne@69: 0 /*PyObject *locals*/ jpayne@69: ); jpayne@69: if (!py_frame) goto bad; jpayne@69: __Pyx_PyFrame_SetLineNumber(py_frame, py_line); jpayne@69: PyTraceBack_Here(py_frame); jpayne@69: bad: jpayne@69: Py_XDECREF(py_code); jpayne@69: Py_XDECREF(py_frame); jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* CIntFromPyVerify */ jpayne@69: #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ jpayne@69: __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) jpayne@69: #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ jpayne@69: __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) jpayne@69: #define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\ jpayne@69: {\ jpayne@69: func_type value = func_value;\ jpayne@69: if (sizeof(target_type) < sizeof(func_type)) {\ jpayne@69: if (unlikely(value != (func_type) (target_type) value)) {\ jpayne@69: func_type zero = 0;\ jpayne@69: if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\ jpayne@69: return (target_type) -1;\ jpayne@69: if (is_unsigned && unlikely(value < zero))\ jpayne@69: goto raise_neg_overflow;\ jpayne@69: else\ jpayne@69: goto raise_overflow;\ jpayne@69: }\ jpayne@69: }\ jpayne@69: return (target_type) value;\ jpayne@69: } jpayne@69: jpayne@69: /* CIntFromPy */ jpayne@69: static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { jpayne@69: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@69: #pragma GCC diagnostic push jpayne@69: #pragma GCC diagnostic ignored "-Wconversion" jpayne@69: #endif jpayne@69: const int neg_one = (int) -1, const_zero = (int) 0; jpayne@69: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@69: #pragma GCC diagnostic pop jpayne@69: #endif jpayne@69: const int is_unsigned = neg_one > const_zero; jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: if (likely(PyInt_Check(x))) { jpayne@69: if ((sizeof(int) < sizeof(long))) { jpayne@69: __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x)) jpayne@69: } else { jpayne@69: long val = PyInt_AS_LONG(x); jpayne@69: if (is_unsigned && unlikely(val < 0)) { jpayne@69: goto raise_neg_overflow; jpayne@69: } jpayne@69: return (int) val; jpayne@69: } jpayne@69: } jpayne@69: #endif jpayne@69: if (unlikely(!PyLong_Check(x))) { jpayne@69: int val; jpayne@69: PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); jpayne@69: if (!tmp) return (int) -1; jpayne@69: val = __Pyx_PyInt_As_int(tmp); jpayne@69: Py_DECREF(tmp); jpayne@69: return val; jpayne@69: } jpayne@69: if (is_unsigned) { jpayne@69: #if CYTHON_USE_PYLONG_INTERNALS jpayne@69: if (unlikely(__Pyx_PyLong_IsNeg(x))) { jpayne@69: goto raise_neg_overflow; jpayne@69: } else if (__Pyx_PyLong_IsCompact(x)) { jpayne@69: __PYX_VERIFY_RETURN_INT(int, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) jpayne@69: } else { jpayne@69: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@69: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@69: switch (__Pyx_PyLong_DigitCount(x)) { jpayne@69: case 2: jpayne@69: if ((8 * sizeof(int) > 1 * PyLong_SHIFT)) { jpayne@69: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@69: __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@69: } else if ((8 * sizeof(int) >= 2 * PyLong_SHIFT)) { jpayne@69: return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); jpayne@69: } jpayne@69: } jpayne@69: break; jpayne@69: case 3: jpayne@69: if ((8 * sizeof(int) > 2 * PyLong_SHIFT)) { jpayne@69: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@69: __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@69: } else if ((8 * sizeof(int) >= 3 * PyLong_SHIFT)) { jpayne@69: return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); jpayne@69: } jpayne@69: } jpayne@69: break; jpayne@69: case 4: jpayne@69: if ((8 * sizeof(int) > 3 * PyLong_SHIFT)) { jpayne@69: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@69: __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@69: } else if ((8 * sizeof(int) >= 4 * PyLong_SHIFT)) { jpayne@69: return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); jpayne@69: } jpayne@69: } jpayne@69: break; jpayne@69: } jpayne@69: } jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 jpayne@69: if (unlikely(Py_SIZE(x) < 0)) { jpayne@69: goto raise_neg_overflow; jpayne@69: } jpayne@69: #else jpayne@69: { jpayne@69: int result = PyObject_RichCompareBool(x, Py_False, Py_LT); jpayne@69: if (unlikely(result < 0)) jpayne@69: return (int) -1; jpayne@69: if (unlikely(result == 1)) jpayne@69: goto raise_neg_overflow; jpayne@69: } jpayne@69: #endif jpayne@69: if ((sizeof(int) <= sizeof(unsigned long))) { jpayne@69: __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x)) jpayne@69: #ifdef HAVE_LONG_LONG jpayne@69: } else if ((sizeof(int) <= sizeof(unsigned PY_LONG_LONG))) { jpayne@69: __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) jpayne@69: #endif jpayne@69: } jpayne@69: } else { jpayne@69: #if CYTHON_USE_PYLONG_INTERNALS jpayne@69: if (__Pyx_PyLong_IsCompact(x)) { jpayne@69: __PYX_VERIFY_RETURN_INT(int, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) jpayne@69: } else { jpayne@69: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@69: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@69: switch (__Pyx_PyLong_SignedDigitCount(x)) { jpayne@69: case -2: jpayne@69: if ((8 * sizeof(int) - 1 > 1 * PyLong_SHIFT)) { jpayne@69: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@69: __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@69: } else if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) { jpayne@69: return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); jpayne@69: } jpayne@69: } jpayne@69: break; jpayne@69: case 2: jpayne@69: if ((8 * sizeof(int) > 1 * PyLong_SHIFT)) { jpayne@69: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@69: __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@69: } else if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) { jpayne@69: return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); jpayne@69: } jpayne@69: } jpayne@69: break; jpayne@69: case -3: jpayne@69: if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) { jpayne@69: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@69: __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@69: } else if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) { jpayne@69: return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); jpayne@69: } jpayne@69: } jpayne@69: break; jpayne@69: case 3: jpayne@69: if ((8 * sizeof(int) > 2 * PyLong_SHIFT)) { jpayne@69: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@69: __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@69: } else if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) { jpayne@69: return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); jpayne@69: } jpayne@69: } jpayne@69: break; jpayne@69: case -4: jpayne@69: if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) { jpayne@69: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@69: __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@69: } else if ((8 * sizeof(int) - 1 > 4 * PyLong_SHIFT)) { jpayne@69: return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); jpayne@69: } jpayne@69: } jpayne@69: break; jpayne@69: case 4: jpayne@69: if ((8 * sizeof(int) > 3 * PyLong_SHIFT)) { jpayne@69: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@69: __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@69: } else if ((8 * sizeof(int) - 1 > 4 * PyLong_SHIFT)) { jpayne@69: return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); jpayne@69: } jpayne@69: } jpayne@69: break; jpayne@69: } jpayne@69: } jpayne@69: #endif jpayne@69: if ((sizeof(int) <= sizeof(long))) { jpayne@69: __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x)) jpayne@69: #ifdef HAVE_LONG_LONG jpayne@69: } else if ((sizeof(int) <= sizeof(PY_LONG_LONG))) { jpayne@69: __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x)) jpayne@69: #endif jpayne@69: } jpayne@69: } jpayne@69: { jpayne@69: int val; jpayne@69: int ret = -1; jpayne@69: #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: Py_ssize_t bytes_copied = PyLong_AsNativeBytes( jpayne@69: x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); jpayne@69: if (unlikely(bytes_copied == -1)) { jpayne@69: } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { jpayne@69: goto raise_overflow; jpayne@69: } else { jpayne@69: ret = 0; jpayne@69: } jpayne@69: #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) jpayne@69: int one = 1; int is_little = (int)*(unsigned char *)&one; jpayne@69: unsigned char *bytes = (unsigned char *)&val; jpayne@69: ret = _PyLong_AsByteArray((PyLongObject *)x, jpayne@69: bytes, sizeof(val), jpayne@69: is_little, !is_unsigned); jpayne@69: #else jpayne@69: PyObject *v; jpayne@69: PyObject *stepval = NULL, *mask = NULL, *shift = NULL; jpayne@69: int bits, remaining_bits, is_negative = 0; jpayne@69: int chunk_size = (sizeof(long) < 8) ? 30 : 62; jpayne@69: if (likely(PyLong_CheckExact(x))) { jpayne@69: v = __Pyx_NewRef(x); jpayne@69: } else { jpayne@69: v = PyNumber_Long(x); jpayne@69: if (unlikely(!v)) return (int) -1; jpayne@69: assert(PyLong_CheckExact(v)); jpayne@69: } jpayne@69: { jpayne@69: int result = PyObject_RichCompareBool(v, Py_False, Py_LT); jpayne@69: if (unlikely(result < 0)) { jpayne@69: Py_DECREF(v); jpayne@69: return (int) -1; jpayne@69: } jpayne@69: is_negative = result == 1; jpayne@69: } jpayne@69: if (is_unsigned && unlikely(is_negative)) { jpayne@69: Py_DECREF(v); jpayne@69: goto raise_neg_overflow; jpayne@69: } else if (is_negative) { jpayne@69: stepval = PyNumber_Invert(v); jpayne@69: Py_DECREF(v); jpayne@69: if (unlikely(!stepval)) jpayne@69: return (int) -1; jpayne@69: } else { jpayne@69: stepval = v; jpayne@69: } jpayne@69: v = NULL; jpayne@69: val = (int) 0; jpayne@69: mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; jpayne@69: shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; jpayne@69: for (bits = 0; bits < (int) sizeof(int) * 8 - chunk_size; bits += chunk_size) { jpayne@69: PyObject *tmp, *digit; jpayne@69: long idigit; jpayne@69: digit = PyNumber_And(stepval, mask); jpayne@69: if (unlikely(!digit)) goto done; jpayne@69: idigit = PyLong_AsLong(digit); jpayne@69: Py_DECREF(digit); jpayne@69: if (unlikely(idigit < 0)) goto done; jpayne@69: val |= ((int) idigit) << bits; jpayne@69: tmp = PyNumber_Rshift(stepval, shift); jpayne@69: if (unlikely(!tmp)) goto done; jpayne@69: Py_DECREF(stepval); stepval = tmp; jpayne@69: } jpayne@69: Py_DECREF(shift); shift = NULL; jpayne@69: Py_DECREF(mask); mask = NULL; jpayne@69: { jpayne@69: long idigit = PyLong_AsLong(stepval); jpayne@69: if (unlikely(idigit < 0)) goto done; jpayne@69: remaining_bits = ((int) sizeof(int) * 8) - bits - (is_unsigned ? 0 : 1); jpayne@69: if (unlikely(idigit >= (1L << remaining_bits))) jpayne@69: goto raise_overflow; jpayne@69: val |= ((int) idigit) << bits; jpayne@69: } jpayne@69: if (!is_unsigned) { jpayne@69: if (unlikely(val & (((int) 1) << (sizeof(int) * 8 - 1)))) jpayne@69: goto raise_overflow; jpayne@69: if (is_negative) jpayne@69: val = ~val; jpayne@69: } jpayne@69: ret = 0; jpayne@69: done: jpayne@69: Py_XDECREF(shift); jpayne@69: Py_XDECREF(mask); jpayne@69: Py_XDECREF(stepval); jpayne@69: #endif jpayne@69: if (unlikely(ret)) jpayne@69: return (int) -1; jpayne@69: return val; jpayne@69: } jpayne@69: raise_overflow: jpayne@69: PyErr_SetString(PyExc_OverflowError, jpayne@69: "value too large to convert to int"); jpayne@69: return (int) -1; jpayne@69: raise_neg_overflow: jpayne@69: PyErr_SetString(PyExc_OverflowError, jpayne@69: "can't convert negative value to int"); jpayne@69: return (int) -1; jpayne@69: } jpayne@69: jpayne@69: /* FormatTypeName */ jpayne@69: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@69: static __Pyx_TypeName jpayne@69: __Pyx_PyType_GetName(PyTypeObject* tp) jpayne@69: { jpayne@69: PyObject *name = __Pyx_PyObject_GetAttrStr((PyObject *)tp, jpayne@69: __pyx_n_s_name); jpayne@69: if (unlikely(name == NULL) || unlikely(!PyUnicode_Check(name))) { jpayne@69: PyErr_Clear(); jpayne@69: Py_XDECREF(name); jpayne@69: name = __Pyx_NewRef(__pyx_n_s__8); jpayne@69: } jpayne@69: return name; jpayne@69: } jpayne@69: #endif jpayne@69: jpayne@69: /* CIntToPy */ jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { jpayne@69: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@69: #pragma GCC diagnostic push jpayne@69: #pragma GCC diagnostic ignored "-Wconversion" jpayne@69: #endif jpayne@69: const long neg_one = (long) -1, const_zero = (long) 0; jpayne@69: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@69: #pragma GCC diagnostic pop jpayne@69: #endif jpayne@69: const int is_unsigned = neg_one > const_zero; jpayne@69: if (is_unsigned) { jpayne@69: if (sizeof(long) < sizeof(long)) { jpayne@69: return PyInt_FromLong((long) value); jpayne@69: } else if (sizeof(long) <= sizeof(unsigned long)) { jpayne@69: return PyLong_FromUnsignedLong((unsigned long) value); jpayne@69: #ifdef HAVE_LONG_LONG jpayne@69: } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { jpayne@69: return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); jpayne@69: #endif jpayne@69: } jpayne@69: } else { jpayne@69: if (sizeof(long) <= sizeof(long)) { jpayne@69: return PyInt_FromLong((long) value); jpayne@69: #ifdef HAVE_LONG_LONG jpayne@69: } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { jpayne@69: return PyLong_FromLongLong((PY_LONG_LONG) value); jpayne@69: #endif jpayne@69: } jpayne@69: } jpayne@69: { jpayne@69: unsigned char *bytes = (unsigned char *)&value; jpayne@69: #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 jpayne@69: if (is_unsigned) { jpayne@69: return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); jpayne@69: } else { jpayne@69: return PyLong_FromNativeBytes(bytes, sizeof(value), -1); jpayne@69: } jpayne@69: #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 jpayne@69: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@69: return _PyLong_FromByteArray(bytes, sizeof(long), jpayne@69: little, !is_unsigned); jpayne@69: #else jpayne@69: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@69: PyObject *from_bytes, *result = NULL; jpayne@69: PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; jpayne@69: from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); jpayne@69: if (!from_bytes) return NULL; jpayne@69: py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(long)); jpayne@69: if (!py_bytes) goto limited_bad; jpayne@69: order_str = PyUnicode_FromString(little ? "little" : "big"); jpayne@69: if (!order_str) goto limited_bad; jpayne@69: arg_tuple = PyTuple_Pack(2, py_bytes, order_str); jpayne@69: if (!arg_tuple) goto limited_bad; jpayne@69: if (!is_unsigned) { jpayne@69: kwds = PyDict_New(); jpayne@69: if (!kwds) goto limited_bad; jpayne@69: if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; jpayne@69: } jpayne@69: result = PyObject_Call(from_bytes, arg_tuple, kwds); jpayne@69: limited_bad: jpayne@69: Py_XDECREF(kwds); jpayne@69: Py_XDECREF(arg_tuple); jpayne@69: Py_XDECREF(order_str); jpayne@69: Py_XDECREF(py_bytes); jpayne@69: Py_XDECREF(from_bytes); jpayne@69: return result; jpayne@69: #endif jpayne@69: } jpayne@69: } jpayne@69: jpayne@69: /* CIntFromPy */ jpayne@69: static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { jpayne@69: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@69: #pragma GCC diagnostic push jpayne@69: #pragma GCC diagnostic ignored "-Wconversion" jpayne@69: #endif jpayne@69: const long neg_one = (long) -1, const_zero = (long) 0; jpayne@69: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@69: #pragma GCC diagnostic pop jpayne@69: #endif jpayne@69: const int is_unsigned = neg_one > const_zero; jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: if (likely(PyInt_Check(x))) { jpayne@69: if ((sizeof(long) < sizeof(long))) { jpayne@69: __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x)) jpayne@69: } else { jpayne@69: long val = PyInt_AS_LONG(x); jpayne@69: if (is_unsigned && unlikely(val < 0)) { jpayne@69: goto raise_neg_overflow; jpayne@69: } jpayne@69: return (long) val; jpayne@69: } jpayne@69: } jpayne@69: #endif jpayne@69: if (unlikely(!PyLong_Check(x))) { jpayne@69: long val; jpayne@69: PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); jpayne@69: if (!tmp) return (long) -1; jpayne@69: val = __Pyx_PyInt_As_long(tmp); jpayne@69: Py_DECREF(tmp); jpayne@69: return val; jpayne@69: } jpayne@69: if (is_unsigned) { jpayne@69: #if CYTHON_USE_PYLONG_INTERNALS jpayne@69: if (unlikely(__Pyx_PyLong_IsNeg(x))) { jpayne@69: goto raise_neg_overflow; jpayne@69: } else if (__Pyx_PyLong_IsCompact(x)) { jpayne@69: __PYX_VERIFY_RETURN_INT(long, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) jpayne@69: } else { jpayne@69: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@69: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@69: switch (__Pyx_PyLong_DigitCount(x)) { jpayne@69: case 2: jpayne@69: if ((8 * sizeof(long) > 1 * PyLong_SHIFT)) { jpayne@69: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@69: __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@69: } else if ((8 * sizeof(long) >= 2 * PyLong_SHIFT)) { jpayne@69: return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); jpayne@69: } jpayne@69: } jpayne@69: break; jpayne@69: case 3: jpayne@69: if ((8 * sizeof(long) > 2 * PyLong_SHIFT)) { jpayne@69: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@69: __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@69: } else if ((8 * sizeof(long) >= 3 * PyLong_SHIFT)) { jpayne@69: return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); jpayne@69: } jpayne@69: } jpayne@69: break; jpayne@69: case 4: jpayne@69: if ((8 * sizeof(long) > 3 * PyLong_SHIFT)) { jpayne@69: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@69: __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@69: } else if ((8 * sizeof(long) >= 4 * PyLong_SHIFT)) { jpayne@69: return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); jpayne@69: } jpayne@69: } jpayne@69: break; jpayne@69: } jpayne@69: } jpayne@69: #endif jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 jpayne@69: if (unlikely(Py_SIZE(x) < 0)) { jpayne@69: goto raise_neg_overflow; jpayne@69: } jpayne@69: #else jpayne@69: { jpayne@69: int result = PyObject_RichCompareBool(x, Py_False, Py_LT); jpayne@69: if (unlikely(result < 0)) jpayne@69: return (long) -1; jpayne@69: if (unlikely(result == 1)) jpayne@69: goto raise_neg_overflow; jpayne@69: } jpayne@69: #endif jpayne@69: if ((sizeof(long) <= sizeof(unsigned long))) { jpayne@69: __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x)) jpayne@69: #ifdef HAVE_LONG_LONG jpayne@69: } else if ((sizeof(long) <= sizeof(unsigned PY_LONG_LONG))) { jpayne@69: __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) jpayne@69: #endif jpayne@69: } jpayne@69: } else { jpayne@69: #if CYTHON_USE_PYLONG_INTERNALS jpayne@69: if (__Pyx_PyLong_IsCompact(x)) { jpayne@69: __PYX_VERIFY_RETURN_INT(long, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) jpayne@69: } else { jpayne@69: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@69: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@69: switch (__Pyx_PyLong_SignedDigitCount(x)) { jpayne@69: case -2: jpayne@69: if ((8 * sizeof(long) - 1 > 1 * PyLong_SHIFT)) { jpayne@69: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@69: __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@69: } else if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) { jpayne@69: return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); jpayne@69: } jpayne@69: } jpayne@69: break; jpayne@69: case 2: jpayne@69: if ((8 * sizeof(long) > 1 * PyLong_SHIFT)) { jpayne@69: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@69: __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@69: } else if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) { jpayne@69: return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); jpayne@69: } jpayne@69: } jpayne@69: break; jpayne@69: case -3: jpayne@69: if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) { jpayne@69: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@69: __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@69: } else if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) { jpayne@69: return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); jpayne@69: } jpayne@69: } jpayne@69: break; jpayne@69: case 3: jpayne@69: if ((8 * sizeof(long) > 2 * PyLong_SHIFT)) { jpayne@69: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@69: __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@69: } else if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) { jpayne@69: return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); jpayne@69: } jpayne@69: } jpayne@69: break; jpayne@69: case -4: jpayne@69: if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) { jpayne@69: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@69: __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@69: } else if ((8 * sizeof(long) - 1 > 4 * PyLong_SHIFT)) { jpayne@69: return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); jpayne@69: } jpayne@69: } jpayne@69: break; jpayne@69: case 4: jpayne@69: if ((8 * sizeof(long) > 3 * PyLong_SHIFT)) { jpayne@69: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@69: __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@69: } else if ((8 * sizeof(long) - 1 > 4 * PyLong_SHIFT)) { jpayne@69: return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); jpayne@69: } jpayne@69: } jpayne@69: break; jpayne@69: } jpayne@69: } jpayne@69: #endif jpayne@69: if ((sizeof(long) <= sizeof(long))) { jpayne@69: __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x)) jpayne@69: #ifdef HAVE_LONG_LONG jpayne@69: } else if ((sizeof(long) <= sizeof(PY_LONG_LONG))) { jpayne@69: __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x)) jpayne@69: #endif jpayne@69: } jpayne@69: } jpayne@69: { jpayne@69: long val; jpayne@69: int ret = -1; jpayne@69: #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@69: Py_ssize_t bytes_copied = PyLong_AsNativeBytes( jpayne@69: x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); jpayne@69: if (unlikely(bytes_copied == -1)) { jpayne@69: } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { jpayne@69: goto raise_overflow; jpayne@69: } else { jpayne@69: ret = 0; jpayne@69: } jpayne@69: #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) jpayne@69: int one = 1; int is_little = (int)*(unsigned char *)&one; jpayne@69: unsigned char *bytes = (unsigned char *)&val; jpayne@69: ret = _PyLong_AsByteArray((PyLongObject *)x, jpayne@69: bytes, sizeof(val), jpayne@69: is_little, !is_unsigned); jpayne@69: #else jpayne@69: PyObject *v; jpayne@69: PyObject *stepval = NULL, *mask = NULL, *shift = NULL; jpayne@69: int bits, remaining_bits, is_negative = 0; jpayne@69: int chunk_size = (sizeof(long) < 8) ? 30 : 62; jpayne@69: if (likely(PyLong_CheckExact(x))) { jpayne@69: v = __Pyx_NewRef(x); jpayne@69: } else { jpayne@69: v = PyNumber_Long(x); jpayne@69: if (unlikely(!v)) return (long) -1; jpayne@69: assert(PyLong_CheckExact(v)); jpayne@69: } jpayne@69: { jpayne@69: int result = PyObject_RichCompareBool(v, Py_False, Py_LT); jpayne@69: if (unlikely(result < 0)) { jpayne@69: Py_DECREF(v); jpayne@69: return (long) -1; jpayne@69: } jpayne@69: is_negative = result == 1; jpayne@69: } jpayne@69: if (is_unsigned && unlikely(is_negative)) { jpayne@69: Py_DECREF(v); jpayne@69: goto raise_neg_overflow; jpayne@69: } else if (is_negative) { jpayne@69: stepval = PyNumber_Invert(v); jpayne@69: Py_DECREF(v); jpayne@69: if (unlikely(!stepval)) jpayne@69: return (long) -1; jpayne@69: } else { jpayne@69: stepval = v; jpayne@69: } jpayne@69: v = NULL; jpayne@69: val = (long) 0; jpayne@69: mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; jpayne@69: shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; jpayne@69: for (bits = 0; bits < (int) sizeof(long) * 8 - chunk_size; bits += chunk_size) { jpayne@69: PyObject *tmp, *digit; jpayne@69: long idigit; jpayne@69: digit = PyNumber_And(stepval, mask); jpayne@69: if (unlikely(!digit)) goto done; jpayne@69: idigit = PyLong_AsLong(digit); jpayne@69: Py_DECREF(digit); jpayne@69: if (unlikely(idigit < 0)) goto done; jpayne@69: val |= ((long) idigit) << bits; jpayne@69: tmp = PyNumber_Rshift(stepval, shift); jpayne@69: if (unlikely(!tmp)) goto done; jpayne@69: Py_DECREF(stepval); stepval = tmp; jpayne@69: } jpayne@69: Py_DECREF(shift); shift = NULL; jpayne@69: Py_DECREF(mask); mask = NULL; jpayne@69: { jpayne@69: long idigit = PyLong_AsLong(stepval); jpayne@69: if (unlikely(idigit < 0)) goto done; jpayne@69: remaining_bits = ((int) sizeof(long) * 8) - bits - (is_unsigned ? 0 : 1); jpayne@69: if (unlikely(idigit >= (1L << remaining_bits))) jpayne@69: goto raise_overflow; jpayne@69: val |= ((long) idigit) << bits; jpayne@69: } jpayne@69: if (!is_unsigned) { jpayne@69: if (unlikely(val & (((long) 1) << (sizeof(long) * 8 - 1)))) jpayne@69: goto raise_overflow; jpayne@69: if (is_negative) jpayne@69: val = ~val; jpayne@69: } jpayne@69: ret = 0; jpayne@69: done: jpayne@69: Py_XDECREF(shift); jpayne@69: Py_XDECREF(mask); jpayne@69: Py_XDECREF(stepval); jpayne@69: #endif jpayne@69: if (unlikely(ret)) jpayne@69: return (long) -1; jpayne@69: return val; jpayne@69: } jpayne@69: raise_overflow: jpayne@69: PyErr_SetString(PyExc_OverflowError, jpayne@69: "value too large to convert to long"); jpayne@69: return (long) -1; jpayne@69: raise_neg_overflow: jpayne@69: PyErr_SetString(PyExc_OverflowError, jpayne@69: "can't convert negative value to long"); jpayne@69: return (long) -1; jpayne@69: } jpayne@69: jpayne@69: /* FastTypeChecks */ jpayne@69: #if CYTHON_COMPILING_IN_CPYTHON jpayne@69: static int __Pyx_InBases(PyTypeObject *a, PyTypeObject *b) { jpayne@69: while (a) { jpayne@69: a = __Pyx_PyType_GetSlot(a, tp_base, PyTypeObject*); jpayne@69: if (a == b) jpayne@69: return 1; jpayne@69: } jpayne@69: return b == &PyBaseObject_Type; jpayne@69: } jpayne@69: static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b) { jpayne@69: PyObject *mro; jpayne@69: if (a == b) return 1; jpayne@69: mro = a->tp_mro; jpayne@69: if (likely(mro)) { jpayne@69: Py_ssize_t i, n; jpayne@69: n = PyTuple_GET_SIZE(mro); jpayne@69: for (i = 0; i < n; i++) { jpayne@69: if (PyTuple_GET_ITEM(mro, i) == (PyObject *)b) jpayne@69: return 1; jpayne@69: } jpayne@69: return 0; jpayne@69: } jpayne@69: return __Pyx_InBases(a, b); jpayne@69: } jpayne@69: static CYTHON_INLINE int __Pyx_IsAnySubtype2(PyTypeObject *cls, PyTypeObject *a, PyTypeObject *b) { jpayne@69: PyObject *mro; jpayne@69: if (cls == a || cls == b) return 1; jpayne@69: mro = cls->tp_mro; jpayne@69: if (likely(mro)) { jpayne@69: Py_ssize_t i, n; jpayne@69: n = PyTuple_GET_SIZE(mro); jpayne@69: for (i = 0; i < n; i++) { jpayne@69: PyObject *base = PyTuple_GET_ITEM(mro, i); jpayne@69: if (base == (PyObject *)a || base == (PyObject *)b) jpayne@69: return 1; jpayne@69: } jpayne@69: return 0; jpayne@69: } jpayne@69: return __Pyx_InBases(cls, a) || __Pyx_InBases(cls, b); jpayne@69: } jpayne@69: #if PY_MAJOR_VERSION == 2 jpayne@69: static int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject* exc_type2) { jpayne@69: PyObject *exception, *value, *tb; jpayne@69: int res; jpayne@69: __Pyx_PyThreadState_declare jpayne@69: __Pyx_PyThreadState_assign jpayne@69: __Pyx_ErrFetch(&exception, &value, &tb); jpayne@69: res = exc_type1 ? PyObject_IsSubclass(err, exc_type1) : 0; jpayne@69: if (unlikely(res == -1)) { jpayne@69: PyErr_WriteUnraisable(err); jpayne@69: res = 0; jpayne@69: } jpayne@69: if (!res) { jpayne@69: res = PyObject_IsSubclass(err, exc_type2); jpayne@69: if (unlikely(res == -1)) { jpayne@69: PyErr_WriteUnraisable(err); jpayne@69: res = 0; jpayne@69: } jpayne@69: } jpayne@69: __Pyx_ErrRestore(exception, value, tb); jpayne@69: return res; jpayne@69: } jpayne@69: #else jpayne@69: static CYTHON_INLINE int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject *exc_type2) { jpayne@69: if (exc_type1) { jpayne@69: return __Pyx_IsAnySubtype2((PyTypeObject*)err, (PyTypeObject*)exc_type1, (PyTypeObject*)exc_type2); jpayne@69: } else { jpayne@69: return __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type2); jpayne@69: } jpayne@69: } jpayne@69: #endif jpayne@69: static int __Pyx_PyErr_GivenExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) { jpayne@69: Py_ssize_t i, n; jpayne@69: assert(PyExceptionClass_Check(exc_type)); jpayne@69: n = PyTuple_GET_SIZE(tuple); jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: for (i=0; i= 0x030B00A4 jpayne@69: return Py_Version & ~0xFFUL; jpayne@69: #else jpayne@69: const char* rt_version = Py_GetVersion(); jpayne@69: unsigned long version = 0; jpayne@69: unsigned long factor = 0x01000000UL; jpayne@69: unsigned int digit = 0; jpayne@69: int i = 0; jpayne@69: while (factor) { jpayne@69: while ('0' <= rt_version[i] && rt_version[i] <= '9') { jpayne@69: digit = digit * 10 + (unsigned int) (rt_version[i] - '0'); jpayne@69: ++i; jpayne@69: } jpayne@69: version += factor * digit; jpayne@69: if (rt_version[i] != '.') jpayne@69: break; jpayne@69: digit = 0; jpayne@69: factor >>= 8; jpayne@69: ++i; jpayne@69: } jpayne@69: return version; jpayne@69: #endif jpayne@69: } jpayne@69: static int __Pyx_check_binary_version(unsigned long ct_version, unsigned long rt_version, int allow_newer) { jpayne@69: const unsigned long MAJOR_MINOR = 0xFFFF0000UL; jpayne@69: if ((rt_version & MAJOR_MINOR) == (ct_version & MAJOR_MINOR)) jpayne@69: return 0; jpayne@69: if (likely(allow_newer && (rt_version & MAJOR_MINOR) > (ct_version & MAJOR_MINOR))) jpayne@69: return 1; jpayne@69: { jpayne@69: char message[200]; jpayne@69: PyOS_snprintf(message, sizeof(message), jpayne@69: "compile time Python version %d.%d " jpayne@69: "of module '%.100s' " jpayne@69: "%s " jpayne@69: "runtime version %d.%d", jpayne@69: (int) (ct_version >> 24), (int) ((ct_version >> 16) & 0xFF), jpayne@69: __Pyx_MODULE_NAME, jpayne@69: (allow_newer) ? "was newer than" : "does not match", jpayne@69: (int) (rt_version >> 24), (int) ((rt_version >> 16) & 0xFF) jpayne@69: ); jpayne@69: return PyErr_WarnEx(NULL, message, 1); jpayne@69: } jpayne@69: } jpayne@69: jpayne@69: /* InitStrings */ jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: static int __Pyx_InitString(__Pyx_StringTabEntry t, PyObject **str) { jpayne@69: if (t.is_unicode | t.is_str) { jpayne@69: if (t.intern) { jpayne@69: *str = PyUnicode_InternFromString(t.s); jpayne@69: } else if (t.encoding) { jpayne@69: *str = PyUnicode_Decode(t.s, t.n - 1, t.encoding, NULL); jpayne@69: } else { jpayne@69: *str = PyUnicode_FromStringAndSize(t.s, t.n - 1); jpayne@69: } jpayne@69: } else { jpayne@69: *str = PyBytes_FromStringAndSize(t.s, t.n - 1); jpayne@69: } jpayne@69: if (!*str) jpayne@69: return -1; jpayne@69: if (PyObject_Hash(*str) == -1) jpayne@69: return -1; jpayne@69: return 0; jpayne@69: } jpayne@69: #endif jpayne@69: static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { jpayne@69: while (t->p) { jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: __Pyx_InitString(*t, t->p); jpayne@69: #else jpayne@69: if (t->is_unicode) { jpayne@69: *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); jpayne@69: } else if (t->intern) { jpayne@69: *t->p = PyString_InternFromString(t->s); jpayne@69: } else { jpayne@69: *t->p = PyString_FromStringAndSize(t->s, t->n - 1); jpayne@69: } jpayne@69: if (!*t->p) jpayne@69: return -1; jpayne@69: if (PyObject_Hash(*t->p) == -1) jpayne@69: return -1; jpayne@69: #endif jpayne@69: ++t; jpayne@69: } jpayne@69: return 0; jpayne@69: } jpayne@69: jpayne@69: #include jpayne@69: static CYTHON_INLINE Py_ssize_t __Pyx_ssize_strlen(const char *s) { jpayne@69: size_t len = strlen(s); jpayne@69: if (unlikely(len > (size_t) PY_SSIZE_T_MAX)) { jpayne@69: PyErr_SetString(PyExc_OverflowError, "byte string is too long"); jpayne@69: return -1; jpayne@69: } jpayne@69: return (Py_ssize_t) len; jpayne@69: } jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { jpayne@69: Py_ssize_t len = __Pyx_ssize_strlen(c_str); jpayne@69: if (unlikely(len < 0)) return NULL; jpayne@69: return __Pyx_PyUnicode_FromStringAndSize(c_str, len); jpayne@69: } jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyByteArray_FromString(const char* c_str) { jpayne@69: Py_ssize_t len = __Pyx_ssize_strlen(c_str); jpayne@69: if (unlikely(len < 0)) return NULL; jpayne@69: return PyByteArray_FromStringAndSize(c_str, len); jpayne@69: } jpayne@69: static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) { jpayne@69: Py_ssize_t ignore; jpayne@69: return __Pyx_PyObject_AsStringAndSize(o, &ignore); jpayne@69: } jpayne@69: #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT jpayne@69: #if !CYTHON_PEP393_ENABLED jpayne@69: static const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) { jpayne@69: char* defenc_c; jpayne@69: PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); jpayne@69: if (!defenc) return NULL; jpayne@69: defenc_c = PyBytes_AS_STRING(defenc); jpayne@69: #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII jpayne@69: { jpayne@69: char* end = defenc_c + PyBytes_GET_SIZE(defenc); jpayne@69: char* c; jpayne@69: for (c = defenc_c; c < end; c++) { jpayne@69: if ((unsigned char) (*c) >= 128) { jpayne@69: PyUnicode_AsASCIIString(o); jpayne@69: return NULL; jpayne@69: } jpayne@69: } jpayne@69: } jpayne@69: #endif jpayne@69: *length = PyBytes_GET_SIZE(defenc); jpayne@69: return defenc_c; jpayne@69: } jpayne@69: #else jpayne@69: static CYTHON_INLINE const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) { jpayne@69: if (unlikely(__Pyx_PyUnicode_READY(o) == -1)) return NULL; jpayne@69: #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII jpayne@69: if (likely(PyUnicode_IS_ASCII(o))) { jpayne@69: *length = PyUnicode_GET_LENGTH(o); jpayne@69: return PyUnicode_AsUTF8(o); jpayne@69: } else { jpayne@69: PyUnicode_AsASCIIString(o); jpayne@69: return NULL; jpayne@69: } jpayne@69: #else jpayne@69: return PyUnicode_AsUTF8AndSize(o, length); jpayne@69: #endif jpayne@69: } jpayne@69: #endif jpayne@69: #endif jpayne@69: static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { jpayne@69: #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT jpayne@69: if ( jpayne@69: #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII jpayne@69: __Pyx_sys_getdefaultencoding_not_ascii && jpayne@69: #endif jpayne@69: PyUnicode_Check(o)) { jpayne@69: return __Pyx_PyUnicode_AsStringAndSize(o, length); jpayne@69: } else jpayne@69: #endif jpayne@69: #if (!CYTHON_COMPILING_IN_PYPY && !CYTHON_COMPILING_IN_LIMITED_API) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE)) jpayne@69: if (PyByteArray_Check(o)) { jpayne@69: *length = PyByteArray_GET_SIZE(o); jpayne@69: return PyByteArray_AS_STRING(o); jpayne@69: } else jpayne@69: #endif jpayne@69: { jpayne@69: char* result; jpayne@69: int r = PyBytes_AsStringAndSize(o, &result, length); jpayne@69: if (unlikely(r < 0)) { jpayne@69: return NULL; jpayne@69: } else { jpayne@69: return result; jpayne@69: } jpayne@69: } jpayne@69: } jpayne@69: static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { jpayne@69: int is_true = x == Py_True; jpayne@69: if (is_true | (x == Py_False) | (x == Py_None)) return is_true; jpayne@69: else return PyObject_IsTrue(x); jpayne@69: } jpayne@69: static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject* x) { jpayne@69: int retval; jpayne@69: if (unlikely(!x)) return -1; jpayne@69: retval = __Pyx_PyObject_IsTrue(x); jpayne@69: Py_DECREF(x); jpayne@69: return retval; jpayne@69: } jpayne@69: static PyObject* __Pyx_PyNumber_IntOrLongWrongResultType(PyObject* result, const char* type_name) { jpayne@69: __Pyx_TypeName result_type_name = __Pyx_PyType_GetName(Py_TYPE(result)); jpayne@69: #if PY_MAJOR_VERSION >= 3 jpayne@69: if (PyLong_Check(result)) { jpayne@69: if (PyErr_WarnFormat(PyExc_DeprecationWarning, 1, jpayne@69: "__int__ returned non-int (type " __Pyx_FMT_TYPENAME "). " jpayne@69: "The ability to return an instance of a strict subclass of int is deprecated, " jpayne@69: "and may be removed in a future version of Python.", jpayne@69: result_type_name)) { jpayne@69: __Pyx_DECREF_TypeName(result_type_name); jpayne@69: Py_DECREF(result); jpayne@69: return NULL; jpayne@69: } jpayne@69: __Pyx_DECREF_TypeName(result_type_name); jpayne@69: return result; jpayne@69: } jpayne@69: #endif jpayne@69: PyErr_Format(PyExc_TypeError, jpayne@69: "__%.4s__ returned non-%.4s (type " __Pyx_FMT_TYPENAME ")", jpayne@69: type_name, type_name, result_type_name); jpayne@69: __Pyx_DECREF_TypeName(result_type_name); jpayne@69: Py_DECREF(result); jpayne@69: return NULL; jpayne@69: } jpayne@69: static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) { jpayne@69: #if CYTHON_USE_TYPE_SLOTS jpayne@69: PyNumberMethods *m; jpayne@69: #endif jpayne@69: const char *name = NULL; jpayne@69: PyObject *res = NULL; jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: if (likely(PyInt_Check(x) || PyLong_Check(x))) jpayne@69: #else jpayne@69: if (likely(PyLong_Check(x))) jpayne@69: #endif jpayne@69: return __Pyx_NewRef(x); jpayne@69: #if CYTHON_USE_TYPE_SLOTS jpayne@69: m = Py_TYPE(x)->tp_as_number; jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: if (m && m->nb_int) { jpayne@69: name = "int"; jpayne@69: res = m->nb_int(x); jpayne@69: } jpayne@69: else if (m && m->nb_long) { jpayne@69: name = "long"; jpayne@69: res = m->nb_long(x); jpayne@69: } jpayne@69: #else jpayne@69: if (likely(m && m->nb_int)) { jpayne@69: name = "int"; jpayne@69: res = m->nb_int(x); jpayne@69: } jpayne@69: #endif jpayne@69: #else jpayne@69: if (!PyBytes_CheckExact(x) && !PyUnicode_CheckExact(x)) { jpayne@69: res = PyNumber_Int(x); jpayne@69: } jpayne@69: #endif jpayne@69: if (likely(res)) { jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: if (unlikely(!PyInt_Check(res) && !PyLong_Check(res))) { jpayne@69: #else jpayne@69: if (unlikely(!PyLong_CheckExact(res))) { jpayne@69: #endif jpayne@69: return __Pyx_PyNumber_IntOrLongWrongResultType(res, name); jpayne@69: } jpayne@69: } jpayne@69: else if (!PyErr_Occurred()) { jpayne@69: PyErr_SetString(PyExc_TypeError, jpayne@69: "an integer is required"); jpayne@69: } jpayne@69: return res; jpayne@69: } jpayne@69: static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { jpayne@69: Py_ssize_t ival; jpayne@69: PyObject *x; jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: if (likely(PyInt_CheckExact(b))) { jpayne@69: if (sizeof(Py_ssize_t) >= sizeof(long)) jpayne@69: return PyInt_AS_LONG(b); jpayne@69: else jpayne@69: return PyInt_AsSsize_t(b); jpayne@69: } jpayne@69: #endif jpayne@69: if (likely(PyLong_CheckExact(b))) { jpayne@69: #if CYTHON_USE_PYLONG_INTERNALS jpayne@69: if (likely(__Pyx_PyLong_IsCompact(b))) { jpayne@69: return __Pyx_PyLong_CompactValue(b); jpayne@69: } else { jpayne@69: const digit* digits = __Pyx_PyLong_Digits(b); jpayne@69: const Py_ssize_t size = __Pyx_PyLong_SignedDigitCount(b); jpayne@69: switch (size) { jpayne@69: case 2: jpayne@69: if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { jpayne@69: return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@69: } jpayne@69: break; jpayne@69: case -2: jpayne@69: if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { jpayne@69: return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@69: } jpayne@69: break; jpayne@69: case 3: jpayne@69: if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { jpayne@69: return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@69: } jpayne@69: break; jpayne@69: case -3: jpayne@69: if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { jpayne@69: return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@69: } jpayne@69: break; jpayne@69: case 4: jpayne@69: if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { jpayne@69: return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@69: } jpayne@69: break; jpayne@69: case -4: jpayne@69: if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { jpayne@69: return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@69: } jpayne@69: break; jpayne@69: } jpayne@69: } jpayne@69: #endif jpayne@69: return PyLong_AsSsize_t(b); jpayne@69: } jpayne@69: x = PyNumber_Index(b); jpayne@69: if (!x) return -1; jpayne@69: ival = PyInt_AsSsize_t(x); jpayne@69: Py_DECREF(x); jpayne@69: return ival; jpayne@69: } jpayne@69: static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject* o) { jpayne@69: if (sizeof(Py_hash_t) == sizeof(Py_ssize_t)) { jpayne@69: return (Py_hash_t) __Pyx_PyIndex_AsSsize_t(o); jpayne@69: #if PY_MAJOR_VERSION < 3 jpayne@69: } else if (likely(PyInt_CheckExact(o))) { jpayne@69: return PyInt_AS_LONG(o); jpayne@69: #endif jpayne@69: } else { jpayne@69: Py_ssize_t ival; jpayne@69: PyObject *x; jpayne@69: x = PyNumber_Index(o); jpayne@69: if (!x) return -1; jpayne@69: ival = PyInt_AsLong(x); jpayne@69: Py_DECREF(x); jpayne@69: return ival; jpayne@69: } jpayne@69: } jpayne@69: static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b) { jpayne@69: return b ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False); jpayne@69: } jpayne@69: static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { jpayne@69: return PyInt_FromSize_t(ival); jpayne@69: } jpayne@69: jpayne@69: jpayne@69: /* #### Code section: utility_code_pragmas_end ### */ jpayne@69: #ifdef _MSC_VER jpayne@69: #pragma warning( pop ) jpayne@69: #endif jpayne@69: jpayne@69: jpayne@69: jpayne@69: /* #### Code section: end ### */ jpayne@69: #endif /* Py_PYTHON_H */