jpayne@69: #-------------------------------------------------------------------------------
jpayne@69: #  Top level makefile for MUMmer 3.0
jpayne@69: #
jpayne@69: #  Dependencies: '/bin/sh', 'g++', 'gcc', 'csh', 'perl', 'sed'
jpayne@69: #
jpayne@69: #  'make all' builds all MUMmer code and scripts in the base directory
jpayne@69: #
jpayne@69: #  'make check' checks for the existance of the MUMmer dependencies
jpayne@69: #
jpayne@69: #  'make clean' removes *.o *~ core* and executable files
jpayne@69: #
jpayne@69: #  'make dist' creates a gzipped tarfile of the MUMmer directories
jpayne@69: #
jpayne@69: #  'make install' alias for 'make all' (for compatibility)
jpayne@69: #
jpayne@69: #  'make kurtz' builds Stefan's mummer program in the base directory
jpayne@69: #
jpayne@69: #  'make scripts' builds the MUMmer scripts in the base directory
jpayne@69: #
jpayne@69: #  'make tigr' builds TIGR's code in the base directory
jpayne@69: #
jpayne@69: #  'make uninstall' alias for 'make clean' (for compatibility)
jpayne@69: #
jpayne@69: #-------------------------------------------------------------------------------
jpayne@69: SHELL = /bin/sh
jpayne@69: VERSION := 3.23
jpayne@69: 
jpayne@69: 
jpayne@69: TOP_DIR     := $(CURDIR)
jpayne@69: BIN_DIR     := $(TOP_DIR)
jpayne@69: AUX_BIN_DIR := $(TOP_DIR)/aux_bin
jpayne@69: 
jpayne@69: DOC_DIR       := $(TOP_DIR)/docs
jpayne@69: SCRIPT_DIR    := $(TOP_DIR)/scripts
jpayne@69: TIGR_SRC_DIR  := $(TOP_DIR)/src/tigr
jpayne@69: KURTZ_SRC_DIR := $(TOP_DIR)/src/kurtz
jpayne@69: 
jpayne@69: CC   := $(filter /%,$(shell /bin/sh -c 'type gcc'))
jpayne@69: CXX  := $(filter /%,$(shell /bin/sh -c 'type g++'))
jpayne@69: SED  := $(filter /%,$(shell /bin/sh -c 'type sed'))
jpayne@69: CSH  := $(filter /%,$(shell /bin/sh -c 'type csh'))
jpayne@69: PERL := $(filter /%,$(shell /bin/sh -c 'type perl'))
jpayne@69: AR   := $(filter /%,$(shell /bin/sh -c 'type ar'))
jpayne@69: 
jpayne@69: CXXFLAGS = -O3
jpayne@69: CFLAGS = -O3
jpayne@69: LDFLAGS  =
jpayne@69: 
jpayne@69: FLATS = ACKNOWLEDGEMENTS COPYRIGHT INSTALL LICENSE Makefile README ChangeLog
jpayne@69: 
jpayne@69: 
jpayne@69: 
jpayne@69: #-- EXPORT THESE VARIABLES TO OTHER MAKEFILES
jpayne@69: export BIN_DIR AUX_BIN_DIR CXX CC CFLAGS CXXFLAGS LDFLAGS
jpayne@69: 
jpayne@69: 
jpayne@69: 
jpayne@69: 
jpayne@69: #-- PHONY rules --#
jpayne@69: .PHONY: all check clean dist scripts uninstall
jpayne@69: 
jpayne@69: 
jpayne@69: all: kurtz tigr scripts
jpayne@69: 
jpayne@69: 
jpayne@69: check:
jpayne@69: ifndef TOP_DIR
jpayne@69: 	@echo "ERROR: could not find working directory"
jpayne@69: endif
jpayne@69: ifndef CC
jpayne@69: 	@echo "ERROR: 'gcc' GNU C compiler not found"
jpayne@69: endif
jpayne@69: ifndef CXX
jpayne@69: 	@echo "ERROR: 'g++' GNU C++ compiler not found"
jpayne@69: endif
jpayne@69: ifndef SED
jpayne@69: 	@echo "ERROR: 'sed' StreamEDitor not found"
jpayne@69: endif
jpayne@69: ifndef CSH
jpayne@69: 	@echo "ERROR: 'csh' C-shell not found"
jpayne@69: endif
jpayne@69: ifndef PERL
jpayne@69: 	@echo "ERROR: 'perl' PERL not found"
jpayne@69: endif
jpayne@69: ifndef AR
jpayne@69: 	@echo "ERROR: 'ar' GNU archiver not found"
jpayne@69: endif
jpayne@69: 	@echo "check complete"
jpayne@69: 
jpayne@69: 
jpayne@69: clean:
jpayne@69: 	rm -f *~ core*
jpayne@69: 	cd $(KURTZ_SRC_DIR); $(MAKE) clean
jpayne@69: 	cd $(TIGR_SRC_DIR); $(MAKE) clean
jpayne@69: 	cd $(SCRIPT_DIR); $(MAKE) clean
jpayne@69: 	cd $(DOC_DIR); $(MAKE) clean
jpayne@69: 
jpayne@69: 
jpayne@69: dist: DISTDIR = MUMmer$(VERSION)
jpayne@69: dist:
jpayne@69: 	mkdir $(DISTDIR)
jpayne@69: 	cp -r aux_bin $(DISTDIR)
jpayne@69: 	cp -r docs $(DISTDIR)
jpayne@69: 	cp -r scripts $(DISTDIR)
jpayne@69: 	cp -r src $(DISTDIR)
jpayne@69: 	cp $(FLATS) $(DISTDIR)
jpayne@69: 	rm -rf `find $(DISTDIR) -name CVS`
jpayne@69: 	tar -cvf $(DISTDIR).tar $(DISTDIR)
jpayne@69: 	gzip $(DISTDIR).tar
jpayne@69: 	rm -rf $(DISTDIR)
jpayne@69: 
jpayne@69: 
jpayne@69: install: all
jpayne@69: 
jpayne@69: 
jpayne@69: kurtz:
jpayne@69: 	cd $(KURTZ_SRC_DIR); $(MAKE) mummer
jpayne@69: 
jpayne@69: 
jpayne@69: scripts:
jpayne@69: 	cd $(SCRIPT_DIR); $(MAKE) all
jpayne@69: 
jpayne@69: 
jpayne@69: tigr:
jpayne@69: 	cd $(TIGR_SRC_DIR); $(MAKE) all
jpayne@69: 
jpayne@69: 
jpayne@69: uninstall: clean
jpayne@69: 
jpayne@69: 
jpayne@69: #-- END OF MAKEFILE --#