jpayne@69: /*
jpayne@69:   Copyright (c) 2003 by Stefan Kurtz and The Institute for
jpayne@69:   Genomic Research.  This is OSI Certified Open Source Software.
jpayne@69:   Please see the file LICENSE for licensing information and
jpayne@69:   the file ACKNOWLEDGEMENTS for names of contributors to the
jpayne@69:   code base.
jpayne@69: */
jpayne@69: 
jpayne@69: This directory contains the complete sources for 'mummer' (maxmat3.x) in three
jpayne@69: subdirectories:
jpayne@69: 
jpayne@69: - libbasedir contains some basic functions which are used for other programs
jpayne@69:   as well. To simplify reusing them I have put them in an extra library.
jpayne@69: 
jpayne@69: - streesrc contains the source for the suffix tree library.
jpayne@69: 
jpayne@69: - mm3src contains the application specific source code for the
jpayne@69:   program maxmat3.x
jpayne@69: 
jpayne@69: You can compile it using make. Since we use include statements
jpayne@69: in Makefile's your make has to support this feature. This e.g.
jpayne@69: holds for gnu make.
jpayne@69: 
jpayne@69: The code was tested for the following platforms:
jpayne@69: 
jpayne@69: - linux on Intel PIII
jpayne@69: - solaris2 on SUN-Sparc
jpayne@69: - tru64 on Compaq-Alpha
jpayne@69: - hp-machine with HP-UX
jpayne@69: 
jpayne@69: 
jpayne@69: #-- FOR DEVELOPERS --#
jpayne@69: If you would prefer to build the suffix tree source from this directory rather
jpayne@69: than the top level MUMmer directory, please uncomment the lines that begin with
jpayne@69: '##' in the Makefiles for each subdirectory to assure they use the appropriate
jpayne@69: values for compilation.