jpayne@68: /* Generated by Cython 3.0.11 */ jpayne@68: jpayne@68: /* BEGIN: Cython Metadata jpayne@68: { jpayne@68: "distutils": { jpayne@68: "define_macros": [ jpayne@68: [ jpayne@68: "BUILDING_WHEEL", jpayne@68: null jpayne@68: ] jpayne@68: ], jpayne@68: "depends": [ jpayne@68: "/project/htslib/htslib/bgzf.h", jpayne@68: "/project/htslib/htslib/cram.h", jpayne@68: "/project/htslib/htslib/faidx.h", jpayne@68: "/project/htslib/htslib/hfile.h", jpayne@68: "/project/htslib/htslib/hts.h", jpayne@68: "/project/htslib/htslib/kstring.h", jpayne@68: "/project/htslib/htslib/sam.h", jpayne@68: "/project/htslib/htslib/tbx.h", jpayne@68: "/project/htslib/htslib/vcf.h", jpayne@68: "/project/htslib/htslib/vcfutils.h", jpayne@68: "/project/pysam/htslib_util.h" jpayne@68: ], jpayne@68: "extra_compile_args": [ jpayne@68: "-Wno-unused", jpayne@68: "-Wno-strict-prototypes", jpayne@68: "-Wno-sign-compare", jpayne@68: "-Wno-error=declaration-after-statement" jpayne@68: ], jpayne@68: "extra_link_args": [ jpayne@68: "-Wl,-rpath,$ORIGIN" jpayne@68: ], jpayne@68: "include_dirs": [ jpayne@68: "pysam", jpayne@68: "/project/pysam", jpayne@68: "/project/htslib", jpayne@68: "/project/samtools", jpayne@68: "/project/samtools/lz4", jpayne@68: "/project/bcftools", jpayne@68: "/project" jpayne@68: ], jpayne@68: "language": "c", jpayne@68: "libraries": [ jpayne@68: "z", jpayne@68: "lzma", jpayne@68: "bz2", jpayne@68: "z", jpayne@68: "m", jpayne@68: "curl", jpayne@68: "crypto", jpayne@68: "chtslib.cpython-37m-x86_64-linux-gnu", jpayne@68: "cutils.cpython-37m-x86_64-linux-gnu" jpayne@68: ], jpayne@68: "library_dirs": [ jpayne@68: "/project/pysam", jpayne@68: "/project", jpayne@68: "build/lib.linux-x86_64-cpython-37/pysam", jpayne@68: "build/lib.linux-x86_64-cpython-37/pysam", jpayne@68: "build/lib.linux-x86_64-cpython-37/pysam", jpayne@68: "build/lib.linux-x86_64-cpython-37/pysam", jpayne@68: "build/lib.linux-x86_64-cpython-37/pysam", jpayne@68: "build/lib.linux-x86_64-cpython-37/pysam", jpayne@68: "build/lib.linux-x86_64-cpython-37/pysam", jpayne@68: "build/lib.linux-x86_64-cpython-37/pysam", jpayne@68: "build/lib.linux-x86_64-cpython-37/pysam", jpayne@68: "build/lib.linux-x86_64-cpython-37/pysam", jpayne@68: "build/lib.linux-x86_64-cpython-37/pysam" jpayne@68: ], jpayne@68: "name": "pysam.libcbgzf", jpayne@68: "sources": [ jpayne@68: "pysam/libcbgzf.pyx" jpayne@68: ] jpayne@68: }, jpayne@68: "module_name": "pysam.libcbgzf" jpayne@68: } jpayne@68: END: Cython Metadata */ jpayne@68: jpayne@68: #ifndef PY_SSIZE_T_CLEAN jpayne@68: #define PY_SSIZE_T_CLEAN jpayne@68: #endif /* PY_SSIZE_T_CLEAN */ jpayne@68: #if defined(CYTHON_LIMITED_API) && 0 jpayne@68: #ifndef Py_LIMITED_API jpayne@68: #if CYTHON_LIMITED_API+0 > 0x03030000 jpayne@68: #define Py_LIMITED_API CYTHON_LIMITED_API jpayne@68: #else jpayne@68: #define Py_LIMITED_API 0x03030000 jpayne@68: #endif jpayne@68: #endif jpayne@68: #endif jpayne@68: jpayne@68: #include "Python.h" jpayne@68: jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: #define __Pyx_PyFloat_FromString(obj) PyFloat_FromString(obj) jpayne@68: #else jpayne@68: #define __Pyx_PyFloat_FromString(obj) PyFloat_FromString(obj, NULL) jpayne@68: #endif jpayne@68: jpayne@68: jpayne@68: #if PY_MAJOR_VERSION <= 2 jpayne@68: #define PyDict_GetItemWithError _PyDict_GetItemWithError jpayne@68: #endif jpayne@68: jpayne@68: jpayne@68: #if (PY_VERSION_HEX < 0x030700b1 || (CYTHON_COMPILING_IN_PYPY && PYPY_VERSION_NUM < 0x07030600)) && !defined(PyContextVar_Get) jpayne@68: #define PyContextVar_Get(var, d, v) ((d) ? ((void)(var), Py_INCREF(d), (v)[0] = (d), 0) : ((v)[0] = NULL, 0) ) jpayne@68: #endif jpayne@68: jpayne@68: #ifndef Py_PYTHON_H jpayne@68: #error Python headers needed to compile C extensions, please install development version of Python. jpayne@68: #elif PY_VERSION_HEX < 0x02070000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000) jpayne@68: #error Cython requires Python 2.7+ or Python 3.3+. jpayne@68: #else jpayne@68: #if defined(CYTHON_LIMITED_API) && CYTHON_LIMITED_API jpayne@68: #define __PYX_EXTRA_ABI_MODULE_NAME "limited" jpayne@68: #else jpayne@68: #define __PYX_EXTRA_ABI_MODULE_NAME "" jpayne@68: #endif jpayne@68: #define CYTHON_ABI "3_0_11" __PYX_EXTRA_ABI_MODULE_NAME jpayne@68: #define __PYX_ABI_MODULE_NAME "_cython_" CYTHON_ABI jpayne@68: #define __PYX_TYPE_MODULE_PREFIX __PYX_ABI_MODULE_NAME "." jpayne@68: #define CYTHON_HEX_VERSION 0x03000BF0 jpayne@68: #define CYTHON_FUTURE_DIVISION 1 jpayne@68: #include jpayne@68: #ifndef offsetof jpayne@68: #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) jpayne@68: #endif jpayne@68: #if !defined(_WIN32) && !defined(WIN32) && !defined(MS_WINDOWS) jpayne@68: #ifndef __stdcall jpayne@68: #define __stdcall jpayne@68: #endif jpayne@68: #ifndef __cdecl jpayne@68: #define __cdecl jpayne@68: #endif jpayne@68: #ifndef __fastcall jpayne@68: #define __fastcall jpayne@68: #endif jpayne@68: #endif jpayne@68: #ifndef DL_IMPORT jpayne@68: #define DL_IMPORT(t) t jpayne@68: #endif jpayne@68: #ifndef DL_EXPORT jpayne@68: #define DL_EXPORT(t) t jpayne@68: #endif jpayne@68: #define __PYX_COMMA , jpayne@68: #ifndef HAVE_LONG_LONG jpayne@68: #define HAVE_LONG_LONG jpayne@68: #endif jpayne@68: #ifndef PY_LONG_LONG jpayne@68: #define PY_LONG_LONG LONG_LONG jpayne@68: #endif jpayne@68: #ifndef Py_HUGE_VAL jpayne@68: #define Py_HUGE_VAL HUGE_VAL jpayne@68: #endif jpayne@68: #define __PYX_LIMITED_VERSION_HEX PY_VERSION_HEX jpayne@68: #if defined(GRAALVM_PYTHON) jpayne@68: /* For very preliminary testing purposes. Most variables are set the same as PyPy. jpayne@68: The existence of this section does not imply that anything works or is even tested */ jpayne@68: #define CYTHON_COMPILING_IN_PYPY 0 jpayne@68: #define CYTHON_COMPILING_IN_CPYTHON 0 jpayne@68: #define CYTHON_COMPILING_IN_LIMITED_API 0 jpayne@68: #define CYTHON_COMPILING_IN_GRAAL 1 jpayne@68: #define CYTHON_COMPILING_IN_NOGIL 0 jpayne@68: #undef CYTHON_USE_TYPE_SLOTS jpayne@68: #define CYTHON_USE_TYPE_SLOTS 0 jpayne@68: #undef CYTHON_USE_TYPE_SPECS jpayne@68: #define CYTHON_USE_TYPE_SPECS 0 jpayne@68: #undef CYTHON_USE_PYTYPE_LOOKUP jpayne@68: #define CYTHON_USE_PYTYPE_LOOKUP 0 jpayne@68: #if PY_VERSION_HEX < 0x03050000 jpayne@68: #undef CYTHON_USE_ASYNC_SLOTS jpayne@68: #define CYTHON_USE_ASYNC_SLOTS 0 jpayne@68: #elif !defined(CYTHON_USE_ASYNC_SLOTS) jpayne@68: #define CYTHON_USE_ASYNC_SLOTS 1 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_PYLIST_INTERNALS jpayne@68: #define CYTHON_USE_PYLIST_INTERNALS 0 jpayne@68: #undef CYTHON_USE_UNICODE_INTERNALS jpayne@68: #define CYTHON_USE_UNICODE_INTERNALS 0 jpayne@68: #undef CYTHON_USE_UNICODE_WRITER jpayne@68: #define CYTHON_USE_UNICODE_WRITER 0 jpayne@68: #undef CYTHON_USE_PYLONG_INTERNALS jpayne@68: #define CYTHON_USE_PYLONG_INTERNALS 0 jpayne@68: #undef CYTHON_AVOID_BORROWED_REFS jpayne@68: #define CYTHON_AVOID_BORROWED_REFS 1 jpayne@68: #undef CYTHON_ASSUME_SAFE_MACROS jpayne@68: #define CYTHON_ASSUME_SAFE_MACROS 0 jpayne@68: #undef CYTHON_UNPACK_METHODS jpayne@68: #define CYTHON_UNPACK_METHODS 0 jpayne@68: #undef CYTHON_FAST_THREAD_STATE jpayne@68: #define CYTHON_FAST_THREAD_STATE 0 jpayne@68: #undef CYTHON_FAST_GIL jpayne@68: #define CYTHON_FAST_GIL 0 jpayne@68: #undef CYTHON_METH_FASTCALL jpayne@68: #define CYTHON_METH_FASTCALL 0 jpayne@68: #undef CYTHON_FAST_PYCALL jpayne@68: #define CYTHON_FAST_PYCALL 0 jpayne@68: #ifndef CYTHON_PEP487_INIT_SUBCLASS jpayne@68: #define CYTHON_PEP487_INIT_SUBCLASS (PY_MAJOR_VERSION >= 3) jpayne@68: #endif jpayne@68: #undef CYTHON_PEP489_MULTI_PHASE_INIT jpayne@68: #define CYTHON_PEP489_MULTI_PHASE_INIT 1 jpayne@68: #undef CYTHON_USE_MODULE_STATE jpayne@68: #define CYTHON_USE_MODULE_STATE 0 jpayne@68: #undef CYTHON_USE_TP_FINALIZE jpayne@68: #define CYTHON_USE_TP_FINALIZE 0 jpayne@68: #undef CYTHON_USE_DICT_VERSIONS jpayne@68: #define CYTHON_USE_DICT_VERSIONS 0 jpayne@68: #undef CYTHON_USE_EXC_INFO_STACK jpayne@68: #define CYTHON_USE_EXC_INFO_STACK 0 jpayne@68: #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC jpayne@68: #define CYTHON_UPDATE_DESCRIPTOR_DOC 0 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_FREELISTS jpayne@68: #define CYTHON_USE_FREELISTS 0 jpayne@68: #elif defined(PYPY_VERSION) jpayne@68: #define CYTHON_COMPILING_IN_PYPY 1 jpayne@68: #define CYTHON_COMPILING_IN_CPYTHON 0 jpayne@68: #define CYTHON_COMPILING_IN_LIMITED_API 0 jpayne@68: #define CYTHON_COMPILING_IN_GRAAL 0 jpayne@68: #define CYTHON_COMPILING_IN_NOGIL 0 jpayne@68: #undef CYTHON_USE_TYPE_SLOTS jpayne@68: #define CYTHON_USE_TYPE_SLOTS 0 jpayne@68: #ifndef CYTHON_USE_TYPE_SPECS jpayne@68: #define CYTHON_USE_TYPE_SPECS 0 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_PYTYPE_LOOKUP jpayne@68: #define CYTHON_USE_PYTYPE_LOOKUP 0 jpayne@68: #if PY_VERSION_HEX < 0x03050000 jpayne@68: #undef CYTHON_USE_ASYNC_SLOTS jpayne@68: #define CYTHON_USE_ASYNC_SLOTS 0 jpayne@68: #elif !defined(CYTHON_USE_ASYNC_SLOTS) jpayne@68: #define CYTHON_USE_ASYNC_SLOTS 1 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_PYLIST_INTERNALS jpayne@68: #define CYTHON_USE_PYLIST_INTERNALS 0 jpayne@68: #undef CYTHON_USE_UNICODE_INTERNALS jpayne@68: #define CYTHON_USE_UNICODE_INTERNALS 0 jpayne@68: #undef CYTHON_USE_UNICODE_WRITER jpayne@68: #define CYTHON_USE_UNICODE_WRITER 0 jpayne@68: #undef CYTHON_USE_PYLONG_INTERNALS jpayne@68: #define CYTHON_USE_PYLONG_INTERNALS 0 jpayne@68: #undef CYTHON_AVOID_BORROWED_REFS jpayne@68: #define CYTHON_AVOID_BORROWED_REFS 1 jpayne@68: #undef CYTHON_ASSUME_SAFE_MACROS jpayne@68: #define CYTHON_ASSUME_SAFE_MACROS 0 jpayne@68: #undef CYTHON_UNPACK_METHODS jpayne@68: #define CYTHON_UNPACK_METHODS 0 jpayne@68: #undef CYTHON_FAST_THREAD_STATE jpayne@68: #define CYTHON_FAST_THREAD_STATE 0 jpayne@68: #undef CYTHON_FAST_GIL jpayne@68: #define CYTHON_FAST_GIL 0 jpayne@68: #undef CYTHON_METH_FASTCALL jpayne@68: #define CYTHON_METH_FASTCALL 0 jpayne@68: #undef CYTHON_FAST_PYCALL jpayne@68: #define CYTHON_FAST_PYCALL 0 jpayne@68: #ifndef CYTHON_PEP487_INIT_SUBCLASS jpayne@68: #define CYTHON_PEP487_INIT_SUBCLASS (PY_MAJOR_VERSION >= 3) jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x03090000 jpayne@68: #undef CYTHON_PEP489_MULTI_PHASE_INIT jpayne@68: #define CYTHON_PEP489_MULTI_PHASE_INIT 0 jpayne@68: #elif !defined(CYTHON_PEP489_MULTI_PHASE_INIT) jpayne@68: #define CYTHON_PEP489_MULTI_PHASE_INIT 1 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_MODULE_STATE jpayne@68: #define CYTHON_USE_MODULE_STATE 0 jpayne@68: #undef CYTHON_USE_TP_FINALIZE jpayne@68: #define CYTHON_USE_TP_FINALIZE (PY_VERSION_HEX >= 0x030400a1 && PYPY_VERSION_NUM >= 0x07030C00) jpayne@68: #undef CYTHON_USE_DICT_VERSIONS jpayne@68: #define CYTHON_USE_DICT_VERSIONS 0 jpayne@68: #undef CYTHON_USE_EXC_INFO_STACK jpayne@68: #define CYTHON_USE_EXC_INFO_STACK 0 jpayne@68: #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC jpayne@68: #define CYTHON_UPDATE_DESCRIPTOR_DOC 0 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_FREELISTS jpayne@68: #define CYTHON_USE_FREELISTS 0 jpayne@68: #elif defined(CYTHON_LIMITED_API) jpayne@68: #ifdef Py_LIMITED_API jpayne@68: #undef __PYX_LIMITED_VERSION_HEX jpayne@68: #define __PYX_LIMITED_VERSION_HEX Py_LIMITED_API jpayne@68: #endif jpayne@68: #define CYTHON_COMPILING_IN_PYPY 0 jpayne@68: #define CYTHON_COMPILING_IN_CPYTHON 0 jpayne@68: #define CYTHON_COMPILING_IN_LIMITED_API 1 jpayne@68: #define CYTHON_COMPILING_IN_GRAAL 0 jpayne@68: #define CYTHON_COMPILING_IN_NOGIL 0 jpayne@68: #undef CYTHON_CLINE_IN_TRACEBACK jpayne@68: #define CYTHON_CLINE_IN_TRACEBACK 0 jpayne@68: #undef CYTHON_USE_TYPE_SLOTS jpayne@68: #define CYTHON_USE_TYPE_SLOTS 0 jpayne@68: #undef CYTHON_USE_TYPE_SPECS jpayne@68: #define CYTHON_USE_TYPE_SPECS 1 jpayne@68: #undef CYTHON_USE_PYTYPE_LOOKUP jpayne@68: #define CYTHON_USE_PYTYPE_LOOKUP 0 jpayne@68: #undef CYTHON_USE_ASYNC_SLOTS jpayne@68: #define CYTHON_USE_ASYNC_SLOTS 0 jpayne@68: #undef CYTHON_USE_PYLIST_INTERNALS jpayne@68: #define CYTHON_USE_PYLIST_INTERNALS 0 jpayne@68: #undef CYTHON_USE_UNICODE_INTERNALS jpayne@68: #define CYTHON_USE_UNICODE_INTERNALS 0 jpayne@68: #ifndef CYTHON_USE_UNICODE_WRITER jpayne@68: #define CYTHON_USE_UNICODE_WRITER 0 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_PYLONG_INTERNALS jpayne@68: #define CYTHON_USE_PYLONG_INTERNALS 0 jpayne@68: #ifndef CYTHON_AVOID_BORROWED_REFS jpayne@68: #define CYTHON_AVOID_BORROWED_REFS 0 jpayne@68: #endif jpayne@68: #undef CYTHON_ASSUME_SAFE_MACROS jpayne@68: #define CYTHON_ASSUME_SAFE_MACROS 0 jpayne@68: #undef CYTHON_UNPACK_METHODS jpayne@68: #define CYTHON_UNPACK_METHODS 0 jpayne@68: #undef CYTHON_FAST_THREAD_STATE jpayne@68: #define CYTHON_FAST_THREAD_STATE 0 jpayne@68: #undef CYTHON_FAST_GIL jpayne@68: #define CYTHON_FAST_GIL 0 jpayne@68: #undef CYTHON_METH_FASTCALL jpayne@68: #define CYTHON_METH_FASTCALL 0 jpayne@68: #undef CYTHON_FAST_PYCALL jpayne@68: #define CYTHON_FAST_PYCALL 0 jpayne@68: #ifndef CYTHON_PEP487_INIT_SUBCLASS jpayne@68: #define CYTHON_PEP487_INIT_SUBCLASS 1 jpayne@68: #endif jpayne@68: #undef CYTHON_PEP489_MULTI_PHASE_INIT jpayne@68: #define CYTHON_PEP489_MULTI_PHASE_INIT 0 jpayne@68: #undef CYTHON_USE_MODULE_STATE jpayne@68: #define CYTHON_USE_MODULE_STATE 1 jpayne@68: #ifndef CYTHON_USE_TP_FINALIZE jpayne@68: #define CYTHON_USE_TP_FINALIZE 0 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_DICT_VERSIONS jpayne@68: #define CYTHON_USE_DICT_VERSIONS 0 jpayne@68: #undef CYTHON_USE_EXC_INFO_STACK jpayne@68: #define CYTHON_USE_EXC_INFO_STACK 0 jpayne@68: #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC jpayne@68: #define CYTHON_UPDATE_DESCRIPTOR_DOC 0 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_FREELISTS jpayne@68: #define CYTHON_USE_FREELISTS 0 jpayne@68: #elif defined(Py_GIL_DISABLED) || defined(Py_NOGIL) jpayne@68: #define CYTHON_COMPILING_IN_PYPY 0 jpayne@68: #define CYTHON_COMPILING_IN_CPYTHON 0 jpayne@68: #define CYTHON_COMPILING_IN_LIMITED_API 0 jpayne@68: #define CYTHON_COMPILING_IN_GRAAL 0 jpayne@68: #define CYTHON_COMPILING_IN_NOGIL 1 jpayne@68: #ifndef CYTHON_USE_TYPE_SLOTS jpayne@68: #define CYTHON_USE_TYPE_SLOTS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_TYPE_SPECS jpayne@68: #define CYTHON_USE_TYPE_SPECS 0 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_PYTYPE_LOOKUP jpayne@68: #define CYTHON_USE_PYTYPE_LOOKUP 0 jpayne@68: #ifndef CYTHON_USE_ASYNC_SLOTS jpayne@68: #define CYTHON_USE_ASYNC_SLOTS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_PYLONG_INTERNALS jpayne@68: #define CYTHON_USE_PYLONG_INTERNALS 0 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_PYLIST_INTERNALS jpayne@68: #define CYTHON_USE_PYLIST_INTERNALS 0 jpayne@68: #ifndef CYTHON_USE_UNICODE_INTERNALS jpayne@68: #define CYTHON_USE_UNICODE_INTERNALS 1 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_UNICODE_WRITER jpayne@68: #define CYTHON_USE_UNICODE_WRITER 0 jpayne@68: #ifndef CYTHON_AVOID_BORROWED_REFS jpayne@68: #define CYTHON_AVOID_BORROWED_REFS 0 jpayne@68: #endif jpayne@68: #ifndef CYTHON_ASSUME_SAFE_MACROS jpayne@68: #define CYTHON_ASSUME_SAFE_MACROS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_UNPACK_METHODS jpayne@68: #define CYTHON_UNPACK_METHODS 1 jpayne@68: #endif jpayne@68: #undef CYTHON_FAST_THREAD_STATE jpayne@68: #define CYTHON_FAST_THREAD_STATE 0 jpayne@68: #undef CYTHON_FAST_GIL jpayne@68: #define CYTHON_FAST_GIL 0 jpayne@68: #ifndef CYTHON_METH_FASTCALL jpayne@68: #define CYTHON_METH_FASTCALL 1 jpayne@68: #endif jpayne@68: #undef CYTHON_FAST_PYCALL jpayne@68: #define CYTHON_FAST_PYCALL 0 jpayne@68: #ifndef CYTHON_PEP487_INIT_SUBCLASS jpayne@68: #define CYTHON_PEP487_INIT_SUBCLASS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_PEP489_MULTI_PHASE_INIT jpayne@68: #define CYTHON_PEP489_MULTI_PHASE_INIT 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_MODULE_STATE jpayne@68: #define CYTHON_USE_MODULE_STATE 0 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_TP_FINALIZE jpayne@68: #define CYTHON_USE_TP_FINALIZE 1 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_DICT_VERSIONS jpayne@68: #define CYTHON_USE_DICT_VERSIONS 0 jpayne@68: #undef CYTHON_USE_EXC_INFO_STACK jpayne@68: #define CYTHON_USE_EXC_INFO_STACK 0 jpayne@68: #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC jpayne@68: #define CYTHON_UPDATE_DESCRIPTOR_DOC 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_FREELISTS jpayne@68: #define CYTHON_USE_FREELISTS 0 jpayne@68: #endif jpayne@68: #else jpayne@68: #define CYTHON_COMPILING_IN_PYPY 0 jpayne@68: #define CYTHON_COMPILING_IN_CPYTHON 1 jpayne@68: #define CYTHON_COMPILING_IN_LIMITED_API 0 jpayne@68: #define CYTHON_COMPILING_IN_GRAAL 0 jpayne@68: #define CYTHON_COMPILING_IN_NOGIL 0 jpayne@68: #ifndef CYTHON_USE_TYPE_SLOTS jpayne@68: #define CYTHON_USE_TYPE_SLOTS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_TYPE_SPECS jpayne@68: #define CYTHON_USE_TYPE_SPECS 0 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_PYTYPE_LOOKUP jpayne@68: #define CYTHON_USE_PYTYPE_LOOKUP 1 jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: #undef CYTHON_USE_ASYNC_SLOTS jpayne@68: #define CYTHON_USE_ASYNC_SLOTS 0 jpayne@68: #elif !defined(CYTHON_USE_ASYNC_SLOTS) jpayne@68: #define CYTHON_USE_ASYNC_SLOTS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_PYLONG_INTERNALS jpayne@68: #define CYTHON_USE_PYLONG_INTERNALS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_PYLIST_INTERNALS jpayne@68: #define CYTHON_USE_PYLIST_INTERNALS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_UNICODE_INTERNALS jpayne@68: #define CYTHON_USE_UNICODE_INTERNALS 1 jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x030300F0 || PY_VERSION_HEX >= 0x030B00A2 jpayne@68: #undef CYTHON_USE_UNICODE_WRITER jpayne@68: #define CYTHON_USE_UNICODE_WRITER 0 jpayne@68: #elif !defined(CYTHON_USE_UNICODE_WRITER) jpayne@68: #define CYTHON_USE_UNICODE_WRITER 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_AVOID_BORROWED_REFS jpayne@68: #define CYTHON_AVOID_BORROWED_REFS 0 jpayne@68: #endif jpayne@68: #ifndef CYTHON_ASSUME_SAFE_MACROS jpayne@68: #define CYTHON_ASSUME_SAFE_MACROS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_UNPACK_METHODS jpayne@68: #define CYTHON_UNPACK_METHODS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_FAST_THREAD_STATE jpayne@68: #define CYTHON_FAST_THREAD_STATE 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_FAST_GIL jpayne@68: #define CYTHON_FAST_GIL (PY_MAJOR_VERSION < 3 || PY_VERSION_HEX >= 0x03060000 && PY_VERSION_HEX < 0x030C00A6) jpayne@68: #endif jpayne@68: #ifndef CYTHON_METH_FASTCALL jpayne@68: #define CYTHON_METH_FASTCALL (PY_VERSION_HEX >= 0x030700A1) jpayne@68: #endif jpayne@68: #ifndef CYTHON_FAST_PYCALL jpayne@68: #define CYTHON_FAST_PYCALL 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_PEP487_INIT_SUBCLASS jpayne@68: #define CYTHON_PEP487_INIT_SUBCLASS 1 jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x03050000 jpayne@68: #undef CYTHON_PEP489_MULTI_PHASE_INIT jpayne@68: #define CYTHON_PEP489_MULTI_PHASE_INIT 0 jpayne@68: #elif !defined(CYTHON_PEP489_MULTI_PHASE_INIT) jpayne@68: #define CYTHON_PEP489_MULTI_PHASE_INIT 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_MODULE_STATE jpayne@68: #define CYTHON_USE_MODULE_STATE 0 jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x030400a1 jpayne@68: #undef CYTHON_USE_TP_FINALIZE jpayne@68: #define CYTHON_USE_TP_FINALIZE 0 jpayne@68: #elif !defined(CYTHON_USE_TP_FINALIZE) jpayne@68: #define CYTHON_USE_TP_FINALIZE 1 jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x030600B1 jpayne@68: #undef CYTHON_USE_DICT_VERSIONS jpayne@68: #define CYTHON_USE_DICT_VERSIONS 0 jpayne@68: #elif !defined(CYTHON_USE_DICT_VERSIONS) jpayne@68: #define CYTHON_USE_DICT_VERSIONS (PY_VERSION_HEX < 0x030C00A5) jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x030700A3 jpayne@68: #undef CYTHON_USE_EXC_INFO_STACK jpayne@68: #define CYTHON_USE_EXC_INFO_STACK 0 jpayne@68: #elif !defined(CYTHON_USE_EXC_INFO_STACK) jpayne@68: #define CYTHON_USE_EXC_INFO_STACK 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC jpayne@68: #define CYTHON_UPDATE_DESCRIPTOR_DOC 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_FREELISTS jpayne@68: #define CYTHON_USE_FREELISTS 1 jpayne@68: #endif jpayne@68: #endif jpayne@68: #if !defined(CYTHON_FAST_PYCCALL) jpayne@68: #define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1) jpayne@68: #endif jpayne@68: #if !defined(CYTHON_VECTORCALL) jpayne@68: #define CYTHON_VECTORCALL (CYTHON_FAST_PYCCALL && PY_VERSION_HEX >= 0x030800B1) jpayne@68: #endif jpayne@68: #define CYTHON_BACKPORT_VECTORCALL (CYTHON_METH_FASTCALL && PY_VERSION_HEX < 0x030800B1) jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: #include "longintrepr.h" jpayne@68: #endif jpayne@68: #undef SHIFT jpayne@68: #undef BASE jpayne@68: #undef MASK jpayne@68: #ifdef SIZEOF_VOID_P jpayne@68: enum { __pyx_check_sizeof_voidp = 1 / (int)(SIZEOF_VOID_P == sizeof(void*)) }; jpayne@68: #endif jpayne@68: #endif jpayne@68: #ifndef __has_attribute jpayne@68: #define __has_attribute(x) 0 jpayne@68: #endif jpayne@68: #ifndef __has_cpp_attribute jpayne@68: #define __has_cpp_attribute(x) 0 jpayne@68: #endif jpayne@68: #ifndef CYTHON_RESTRICT jpayne@68: #if defined(__GNUC__) jpayne@68: #define CYTHON_RESTRICT __restrict__ jpayne@68: #elif defined(_MSC_VER) && _MSC_VER >= 1400 jpayne@68: #define CYTHON_RESTRICT __restrict jpayne@68: #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L jpayne@68: #define CYTHON_RESTRICT restrict jpayne@68: #else jpayne@68: #define CYTHON_RESTRICT jpayne@68: #endif jpayne@68: #endif jpayne@68: #ifndef CYTHON_UNUSED jpayne@68: #if defined(__cplusplus) jpayne@68: /* for clang __has_cpp_attribute(maybe_unused) is true even before C++17 jpayne@68: * but leads to warnings with -pedantic, since it is a C++17 feature */ jpayne@68: #if ((defined(_MSVC_LANG) && _MSVC_LANG >= 201703L) || __cplusplus >= 201703L) jpayne@68: #if __has_cpp_attribute(maybe_unused) jpayne@68: #define CYTHON_UNUSED [[maybe_unused]] jpayne@68: #endif jpayne@68: #endif jpayne@68: #endif jpayne@68: #endif jpayne@68: #ifndef CYTHON_UNUSED jpayne@68: # if defined(__GNUC__) jpayne@68: # if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) jpayne@68: # define CYTHON_UNUSED __attribute__ ((__unused__)) jpayne@68: # else jpayne@68: # define CYTHON_UNUSED jpayne@68: # endif jpayne@68: # elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) jpayne@68: # define CYTHON_UNUSED __attribute__ ((__unused__)) jpayne@68: # else jpayne@68: # define CYTHON_UNUSED jpayne@68: # endif jpayne@68: #endif jpayne@68: #ifndef CYTHON_UNUSED_VAR jpayne@68: # if defined(__cplusplus) jpayne@68: template void CYTHON_UNUSED_VAR( const T& ) { } jpayne@68: # else jpayne@68: # define CYTHON_UNUSED_VAR(x) (void)(x) jpayne@68: # endif jpayne@68: #endif jpayne@68: #ifndef CYTHON_MAYBE_UNUSED_VAR jpayne@68: #define CYTHON_MAYBE_UNUSED_VAR(x) CYTHON_UNUSED_VAR(x) jpayne@68: #endif jpayne@68: #ifndef CYTHON_NCP_UNUSED jpayne@68: # if CYTHON_COMPILING_IN_CPYTHON jpayne@68: # define CYTHON_NCP_UNUSED jpayne@68: # else jpayne@68: # define CYTHON_NCP_UNUSED CYTHON_UNUSED jpayne@68: # endif jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_CPP_STD_MOVE jpayne@68: #if defined(__cplusplus) && (\ jpayne@68: __cplusplus >= 201103L || (defined(_MSC_VER) && _MSC_VER >= 1600)) jpayne@68: #define CYTHON_USE_CPP_STD_MOVE 1 jpayne@68: #else jpayne@68: #define CYTHON_USE_CPP_STD_MOVE 0 jpayne@68: #endif jpayne@68: #endif jpayne@68: #define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) jpayne@68: #ifdef _MSC_VER jpayne@68: #ifndef _MSC_STDINT_H_ jpayne@68: #if _MSC_VER < 1300 jpayne@68: typedef unsigned char uint8_t; jpayne@68: typedef unsigned short uint16_t; jpayne@68: typedef unsigned int uint32_t; jpayne@68: #else jpayne@68: typedef unsigned __int8 uint8_t; jpayne@68: typedef unsigned __int16 uint16_t; jpayne@68: typedef unsigned __int32 uint32_t; jpayne@68: #endif jpayne@68: #endif jpayne@68: #if _MSC_VER < 1300 jpayne@68: #ifdef _WIN64 jpayne@68: typedef unsigned long long __pyx_uintptr_t; jpayne@68: #else jpayne@68: typedef unsigned int __pyx_uintptr_t; jpayne@68: #endif jpayne@68: #else jpayne@68: #ifdef _WIN64 jpayne@68: typedef unsigned __int64 __pyx_uintptr_t; jpayne@68: #else jpayne@68: typedef unsigned __int32 __pyx_uintptr_t; jpayne@68: #endif jpayne@68: #endif jpayne@68: #else jpayne@68: #include jpayne@68: typedef uintptr_t __pyx_uintptr_t; jpayne@68: #endif jpayne@68: #ifndef CYTHON_FALLTHROUGH jpayne@68: #if defined(__cplusplus) jpayne@68: /* for clang __has_cpp_attribute(fallthrough) is true even before C++17 jpayne@68: * but leads to warnings with -pedantic, since it is a C++17 feature */ jpayne@68: #if ((defined(_MSVC_LANG) && _MSVC_LANG >= 201703L) || __cplusplus >= 201703L) jpayne@68: #if __has_cpp_attribute(fallthrough) jpayne@68: #define CYTHON_FALLTHROUGH [[fallthrough]] jpayne@68: #endif jpayne@68: #endif jpayne@68: #ifndef CYTHON_FALLTHROUGH jpayne@68: #if __has_cpp_attribute(clang::fallthrough) jpayne@68: #define CYTHON_FALLTHROUGH [[clang::fallthrough]] jpayne@68: #elif __has_cpp_attribute(gnu::fallthrough) jpayne@68: #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] jpayne@68: #endif jpayne@68: #endif jpayne@68: #endif jpayne@68: #ifndef CYTHON_FALLTHROUGH jpayne@68: #if __has_attribute(fallthrough) jpayne@68: #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) jpayne@68: #else jpayne@68: #define CYTHON_FALLTHROUGH jpayne@68: #endif jpayne@68: #endif jpayne@68: #if defined(__clang__) && defined(__apple_build_version__) jpayne@68: #if __apple_build_version__ < 7000000 jpayne@68: #undef CYTHON_FALLTHROUGH jpayne@68: #define CYTHON_FALLTHROUGH jpayne@68: #endif jpayne@68: #endif jpayne@68: #endif jpayne@68: #ifdef __cplusplus jpayne@68: template jpayne@68: struct __PYX_IS_UNSIGNED_IMPL {static const bool value = T(0) < T(-1);}; jpayne@68: #define __PYX_IS_UNSIGNED(type) (__PYX_IS_UNSIGNED_IMPL::value) jpayne@68: #else jpayne@68: #define __PYX_IS_UNSIGNED(type) (((type)-1) > 0) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_PYPY == 1 jpayne@68: #define __PYX_NEED_TP_PRINT_SLOT (PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x030A0000) jpayne@68: #else jpayne@68: #define __PYX_NEED_TP_PRINT_SLOT (PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000) jpayne@68: #endif jpayne@68: #define __PYX_REINTERPRET_FUNCION(func_pointer, other_pointer) ((func_pointer)(void(*)(void))(other_pointer)) jpayne@68: jpayne@68: #ifndef CYTHON_INLINE jpayne@68: #if defined(__clang__) jpayne@68: #define CYTHON_INLINE __inline__ __attribute__ ((__unused__)) jpayne@68: #elif defined(__GNUC__) jpayne@68: #define CYTHON_INLINE __inline__ jpayne@68: #elif defined(_MSC_VER) jpayne@68: #define CYTHON_INLINE __inline jpayne@68: #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L jpayne@68: #define CYTHON_INLINE inline jpayne@68: #else jpayne@68: #define CYTHON_INLINE jpayne@68: #endif jpayne@68: #endif jpayne@68: jpayne@68: #define __PYX_BUILD_PY_SSIZE_T "n" jpayne@68: #define CYTHON_FORMAT_SSIZE_T "z" jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" jpayne@68: #define __Pyx_DefaultClassType PyClass_Type jpayne@68: #define __Pyx_PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ jpayne@68: PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) jpayne@68: #else jpayne@68: #define __Pyx_BUILTIN_MODULE_NAME "builtins" jpayne@68: #define __Pyx_DefaultClassType PyType_Type jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyCode_New(int a, int p, int k, int l, int s, int f, jpayne@68: PyObject *code, PyObject *c, PyObject* n, PyObject *v, jpayne@68: PyObject *fv, PyObject *cell, PyObject* fn, jpayne@68: PyObject *name, int fline, PyObject *lnos) { jpayne@68: PyObject *exception_table = NULL; jpayne@68: PyObject *types_module=NULL, *code_type=NULL, *result=NULL; jpayne@68: #if __PYX_LIMITED_VERSION_HEX < 0x030B0000 jpayne@68: PyObject *version_info; jpayne@68: PyObject *py_minor_version = NULL; jpayne@68: #endif jpayne@68: long minor_version = 0; jpayne@68: PyObject *type, *value, *traceback; jpayne@68: PyErr_Fetch(&type, &value, &traceback); jpayne@68: #if __PYX_LIMITED_VERSION_HEX >= 0x030B0000 jpayne@68: minor_version = 11; jpayne@68: #else jpayne@68: if (!(version_info = PySys_GetObject("version_info"))) goto end; jpayne@68: if (!(py_minor_version = PySequence_GetItem(version_info, 1))) goto end; jpayne@68: minor_version = PyLong_AsLong(py_minor_version); jpayne@68: Py_DECREF(py_minor_version); jpayne@68: if (minor_version == -1 && PyErr_Occurred()) goto end; jpayne@68: #endif jpayne@68: if (!(types_module = PyImport_ImportModule("types"))) goto end; jpayne@68: if (!(code_type = PyObject_GetAttrString(types_module, "CodeType"))) goto end; jpayne@68: if (minor_version <= 7) { jpayne@68: (void)p; jpayne@68: result = PyObject_CallFunction(code_type, "iiiiiOOOOOOiOO", a, k, l, s, f, code, jpayne@68: c, n, v, fn, name, fline, lnos, fv, cell); jpayne@68: } else if (minor_version <= 10) { jpayne@68: result = PyObject_CallFunction(code_type, "iiiiiiOOOOOOiOO", a,p, k, l, s, f, code, jpayne@68: c, n, v, fn, name, fline, lnos, fv, cell); jpayne@68: } else { jpayne@68: if (!(exception_table = PyBytes_FromStringAndSize(NULL, 0))) goto end; jpayne@68: result = PyObject_CallFunction(code_type, "iiiiiiOOOOOOOiOO", a,p, k, l, s, f, code, jpayne@68: c, n, v, fn, name, name, fline, lnos, exception_table, fv, cell); jpayne@68: } jpayne@68: end: jpayne@68: Py_XDECREF(code_type); jpayne@68: Py_XDECREF(exception_table); jpayne@68: Py_XDECREF(types_module); jpayne@68: if (type) { jpayne@68: PyErr_Restore(type, value, traceback); jpayne@68: } jpayne@68: return result; jpayne@68: } jpayne@68: #ifndef CO_OPTIMIZED jpayne@68: #define CO_OPTIMIZED 0x0001 jpayne@68: #endif jpayne@68: #ifndef CO_NEWLOCALS jpayne@68: #define CO_NEWLOCALS 0x0002 jpayne@68: #endif jpayne@68: #ifndef CO_VARARGS jpayne@68: #define CO_VARARGS 0x0004 jpayne@68: #endif jpayne@68: #ifndef CO_VARKEYWORDS jpayne@68: #define CO_VARKEYWORDS 0x0008 jpayne@68: #endif jpayne@68: #ifndef CO_ASYNC_GENERATOR jpayne@68: #define CO_ASYNC_GENERATOR 0x0200 jpayne@68: #endif jpayne@68: #ifndef CO_GENERATOR jpayne@68: #define CO_GENERATOR 0x0020 jpayne@68: #endif jpayne@68: #ifndef CO_COROUTINE jpayne@68: #define CO_COROUTINE 0x0080 jpayne@68: #endif jpayne@68: #elif PY_VERSION_HEX >= 0x030B0000 jpayne@68: static CYTHON_INLINE PyCodeObject* __Pyx_PyCode_New(int a, int p, int k, int l, int s, int f, jpayne@68: PyObject *code, PyObject *c, PyObject* n, PyObject *v, jpayne@68: PyObject *fv, PyObject *cell, PyObject* fn, jpayne@68: PyObject *name, int fline, PyObject *lnos) { jpayne@68: PyCodeObject *result; jpayne@68: PyObject *empty_bytes = PyBytes_FromStringAndSize("", 0); jpayne@68: if (!empty_bytes) return NULL; jpayne@68: result = jpayne@68: #if PY_VERSION_HEX >= 0x030C0000 jpayne@68: PyUnstable_Code_NewWithPosOnlyArgs jpayne@68: #else jpayne@68: PyCode_NewWithPosOnlyArgs jpayne@68: #endif jpayne@68: (a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, name, fline, lnos, empty_bytes); jpayne@68: Py_DECREF(empty_bytes); jpayne@68: return result; jpayne@68: } jpayne@68: #elif PY_VERSION_HEX >= 0x030800B2 && !CYTHON_COMPILING_IN_PYPY jpayne@68: #define __Pyx_PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ jpayne@68: PyCode_NewWithPosOnlyArgs(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) jpayne@68: #else jpayne@68: #define __Pyx_PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ jpayne@68: PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) jpayne@68: #endif jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030900A4 || defined(Py_IS_TYPE) jpayne@68: #define __Pyx_IS_TYPE(ob, type) Py_IS_TYPE(ob, type) jpayne@68: #else jpayne@68: #define __Pyx_IS_TYPE(ob, type) (((const PyObject*)ob)->ob_type == (type)) jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_Is) jpayne@68: #define __Pyx_Py_Is(x, y) Py_Is(x, y) jpayne@68: #else jpayne@68: #define __Pyx_Py_Is(x, y) ((x) == (y)) jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsNone) jpayne@68: #define __Pyx_Py_IsNone(ob) Py_IsNone(ob) jpayne@68: #else jpayne@68: #define __Pyx_Py_IsNone(ob) __Pyx_Py_Is((ob), Py_None) jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsTrue) jpayne@68: #define __Pyx_Py_IsTrue(ob) Py_IsTrue(ob) jpayne@68: #else jpayne@68: #define __Pyx_Py_IsTrue(ob) __Pyx_Py_Is((ob), Py_True) jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsFalse) jpayne@68: #define __Pyx_Py_IsFalse(ob) Py_IsFalse(ob) jpayne@68: #else jpayne@68: #define __Pyx_Py_IsFalse(ob) __Pyx_Py_Is((ob), Py_False) jpayne@68: #endif jpayne@68: #define __Pyx_NoneAsNull(obj) (__Pyx_Py_IsNone(obj) ? NULL : (obj)) jpayne@68: #if PY_VERSION_HEX >= 0x030900F0 && !CYTHON_COMPILING_IN_PYPY jpayne@68: #define __Pyx_PyObject_GC_IsFinalized(o) PyObject_GC_IsFinalized(o) jpayne@68: #else jpayne@68: #define __Pyx_PyObject_GC_IsFinalized(o) _PyGC_FINALIZED(o) jpayne@68: #endif jpayne@68: #ifndef CO_COROUTINE jpayne@68: #define CO_COROUTINE 0x80 jpayne@68: #endif jpayne@68: #ifndef CO_ASYNC_GENERATOR jpayne@68: #define CO_ASYNC_GENERATOR 0x200 jpayne@68: #endif jpayne@68: #ifndef Py_TPFLAGS_CHECKTYPES jpayne@68: #define Py_TPFLAGS_CHECKTYPES 0 jpayne@68: #endif jpayne@68: #ifndef Py_TPFLAGS_HAVE_INDEX jpayne@68: #define Py_TPFLAGS_HAVE_INDEX 0 jpayne@68: #endif jpayne@68: #ifndef Py_TPFLAGS_HAVE_NEWBUFFER jpayne@68: #define Py_TPFLAGS_HAVE_NEWBUFFER 0 jpayne@68: #endif jpayne@68: #ifndef Py_TPFLAGS_HAVE_FINALIZE jpayne@68: #define Py_TPFLAGS_HAVE_FINALIZE 0 jpayne@68: #endif jpayne@68: #ifndef Py_TPFLAGS_SEQUENCE jpayne@68: #define Py_TPFLAGS_SEQUENCE 0 jpayne@68: #endif jpayne@68: #ifndef Py_TPFLAGS_MAPPING jpayne@68: #define Py_TPFLAGS_MAPPING 0 jpayne@68: #endif jpayne@68: #ifndef METH_STACKLESS jpayne@68: #define METH_STACKLESS 0 jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX <= 0x030700A3 || !defined(METH_FASTCALL) jpayne@68: #ifndef METH_FASTCALL jpayne@68: #define METH_FASTCALL 0x80 jpayne@68: #endif jpayne@68: typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject *const *args, Py_ssize_t nargs); jpayne@68: typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject *const *args, jpayne@68: Py_ssize_t nargs, PyObject *kwnames); jpayne@68: #else jpayne@68: #if PY_VERSION_HEX >= 0x030d00A4 jpayne@68: # define __Pyx_PyCFunctionFast PyCFunctionFast jpayne@68: # define __Pyx_PyCFunctionFastWithKeywords PyCFunctionFastWithKeywords jpayne@68: #else jpayne@68: # define __Pyx_PyCFunctionFast _PyCFunctionFast jpayne@68: # define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords jpayne@68: #endif jpayne@68: #endif jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: #define __Pyx_METH_FASTCALL METH_FASTCALL jpayne@68: #define __Pyx_PyCFunction_FastCall __Pyx_PyCFunctionFast jpayne@68: #define __Pyx_PyCFunction_FastCallWithKeywords __Pyx_PyCFunctionFastWithKeywords jpayne@68: #else jpayne@68: #define __Pyx_METH_FASTCALL METH_VARARGS jpayne@68: #define __Pyx_PyCFunction_FastCall PyCFunction jpayne@68: #define __Pyx_PyCFunction_FastCallWithKeywords PyCFunctionWithKeywords jpayne@68: #endif jpayne@68: #if CYTHON_VECTORCALL jpayne@68: #define __pyx_vectorcallfunc vectorcallfunc jpayne@68: #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET PY_VECTORCALL_ARGUMENTS_OFFSET jpayne@68: #define __Pyx_PyVectorcall_NARGS(n) PyVectorcall_NARGS((size_t)(n)) jpayne@68: #elif CYTHON_BACKPORT_VECTORCALL jpayne@68: typedef PyObject *(*__pyx_vectorcallfunc)(PyObject *callable, PyObject *const *args, jpayne@68: size_t nargsf, PyObject *kwnames); jpayne@68: #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET ((size_t)1 << (8 * sizeof(size_t) - 1)) jpayne@68: #define __Pyx_PyVectorcall_NARGS(n) ((Py_ssize_t)(((size_t)(n)) & ~__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET)) jpayne@68: #else jpayne@68: #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET 0 jpayne@68: #define __Pyx_PyVectorcall_NARGS(n) ((Py_ssize_t)(n)) jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 0x030900B1 jpayne@68: #define __Pyx_PyCFunction_CheckExact(func) PyCFunction_CheckExact(func) jpayne@68: #else jpayne@68: #define __Pyx_PyCFunction_CheckExact(func) PyCFunction_Check(func) jpayne@68: #endif jpayne@68: #define __Pyx_CyOrPyCFunction_Check(func) PyCFunction_Check(func) jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: #define __Pyx_CyOrPyCFunction_GET_FUNCTION(func) (((PyCFunctionObject*)(func))->m_ml->ml_meth) jpayne@68: #elif !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #define __Pyx_CyOrPyCFunction_GET_FUNCTION(func) PyCFunction_GET_FUNCTION(func) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: #define __Pyx_CyOrPyCFunction_GET_FLAGS(func) (((PyCFunctionObject*)(func))->m_ml->ml_flags) jpayne@68: static CYTHON_INLINE PyObject* __Pyx_CyOrPyCFunction_GET_SELF(PyObject *func) { jpayne@68: return (__Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_STATIC) ? NULL : ((PyCFunctionObject*)func)->m_self; jpayne@68: } jpayne@68: #endif jpayne@68: static CYTHON_INLINE int __Pyx__IsSameCFunction(PyObject *func, void *cfunc) { jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: return PyCFunction_Check(func) && PyCFunction_GetFunction(func) == (PyCFunction) cfunc; jpayne@68: #else jpayne@68: return PyCFunction_Check(func) && PyCFunction_GET_FUNCTION(func) == (PyCFunction) cfunc; jpayne@68: #endif jpayne@68: } jpayne@68: #define __Pyx_IsSameCFunction(func, cfunc) __Pyx__IsSameCFunction(func, cfunc) jpayne@68: #if __PYX_LIMITED_VERSION_HEX < 0x030900B1 jpayne@68: #define __Pyx_PyType_FromModuleAndSpec(m, s, b) ((void)m, PyType_FromSpecWithBases(s, b)) jpayne@68: typedef PyObject *(*__Pyx_PyCMethod)(PyObject *, PyTypeObject *, PyObject *const *, size_t, PyObject *); jpayne@68: #else jpayne@68: #define __Pyx_PyType_FromModuleAndSpec(m, s, b) PyType_FromModuleAndSpec(m, s, b) jpayne@68: #define __Pyx_PyCMethod PyCMethod jpayne@68: #endif jpayne@68: #ifndef METH_METHOD jpayne@68: #define METH_METHOD 0x200 jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc) jpayne@68: #define PyObject_Malloc(s) PyMem_Malloc(s) jpayne@68: #define PyObject_Free(p) PyMem_Free(p) jpayne@68: #define PyObject_Realloc(p) PyMem_Realloc(p) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) jpayne@68: #define __Pyx_PyFrame_SetLineNumber(frame, lineno) jpayne@68: #else jpayne@68: #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) jpayne@68: #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #define __Pyx_PyThreadState_Current PyThreadState_Get() jpayne@68: #elif !CYTHON_FAST_THREAD_STATE jpayne@68: #define __Pyx_PyThreadState_Current PyThreadState_GET() jpayne@68: #elif PY_VERSION_HEX >= 0x030d00A1 jpayne@68: #define __Pyx_PyThreadState_Current PyThreadState_GetUnchecked() jpayne@68: #elif PY_VERSION_HEX >= 0x03060000 jpayne@68: #define __Pyx_PyThreadState_Current _PyThreadState_UncheckedGet() jpayne@68: #elif PY_VERSION_HEX >= 0x03000000 jpayne@68: #define __Pyx_PyThreadState_Current PyThreadState_GET() jpayne@68: #else jpayne@68: #define __Pyx_PyThreadState_Current _PyThreadState_Current jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static CYTHON_INLINE void *__Pyx_PyModule_GetState(PyObject *op) jpayne@68: { jpayne@68: void *result; jpayne@68: result = PyModule_GetState(op); jpayne@68: if (!result) jpayne@68: Py_FatalError("Couldn't find the module state"); jpayne@68: return result; jpayne@68: } jpayne@68: #endif jpayne@68: #define __Pyx_PyObject_GetSlot(obj, name, func_ctype) __Pyx_PyType_GetSlot(Py_TYPE(obj), name, func_ctype) jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #define __Pyx_PyType_GetSlot(type, name, func_ctype) ((func_ctype) PyType_GetSlot((type), Py_##name)) jpayne@68: #else jpayne@68: #define __Pyx_PyType_GetSlot(type, name, func_ctype) ((type)->name) jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x030700A2 && !defined(PyThread_tss_create) && !defined(Py_tss_NEEDS_INIT) jpayne@68: #include "pythread.h" jpayne@68: #define Py_tss_NEEDS_INIT 0 jpayne@68: typedef int Py_tss_t; jpayne@68: static CYTHON_INLINE int PyThread_tss_create(Py_tss_t *key) { jpayne@68: *key = PyThread_create_key(); jpayne@68: return 0; jpayne@68: } jpayne@68: static CYTHON_INLINE Py_tss_t * PyThread_tss_alloc(void) { jpayne@68: Py_tss_t *key = (Py_tss_t *)PyObject_Malloc(sizeof(Py_tss_t)); jpayne@68: *key = Py_tss_NEEDS_INIT; jpayne@68: return key; jpayne@68: } jpayne@68: static CYTHON_INLINE void PyThread_tss_free(Py_tss_t *key) { jpayne@68: PyObject_Free(key); jpayne@68: } jpayne@68: static CYTHON_INLINE int PyThread_tss_is_created(Py_tss_t *key) { jpayne@68: return *key != Py_tss_NEEDS_INIT; jpayne@68: } jpayne@68: static CYTHON_INLINE void PyThread_tss_delete(Py_tss_t *key) { jpayne@68: PyThread_delete_key(*key); jpayne@68: *key = Py_tss_NEEDS_INIT; jpayne@68: } jpayne@68: static CYTHON_INLINE int PyThread_tss_set(Py_tss_t *key, void *value) { jpayne@68: return PyThread_set_key_value(*key, value); jpayne@68: } jpayne@68: static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) { jpayne@68: return PyThread_get_key_value(*key); jpayne@68: } jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: #if CYTHON_COMPILING_IN_PYPY jpayne@68: #if PYPY_VERSION_NUM < 0x07030600 jpayne@68: #if defined(__cplusplus) && __cplusplus >= 201402L jpayne@68: [[deprecated("`with nogil:` inside a nogil function will not release the GIL in PyPy2 < 7.3.6")]] jpayne@68: #elif defined(__GNUC__) || defined(__clang__) jpayne@68: __attribute__ ((__deprecated__("`with nogil:` inside a nogil function will not release the GIL in PyPy2 < 7.3.6"))) jpayne@68: #elif defined(_MSC_VER) jpayne@68: __declspec(deprecated("`with nogil:` inside a nogil function will not release the GIL in PyPy2 < 7.3.6")) jpayne@68: #endif jpayne@68: static CYTHON_INLINE int PyGILState_Check(void) { jpayne@68: return 0; jpayne@68: } jpayne@68: #else // PYPY_VERSION_NUM < 0x07030600 jpayne@68: #endif // PYPY_VERSION_NUM < 0x07030600 jpayne@68: #else jpayne@68: static CYTHON_INLINE int PyGILState_Check(void) { jpayne@68: PyThreadState * tstate = _PyThreadState_Current; jpayne@68: return tstate && (tstate == PyGILState_GetThisThreadState()); jpayne@68: } jpayne@68: #endif jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030d0000 || defined(_PyDict_NewPresized) jpayne@68: #define __Pyx_PyDict_NewPresized(n) ((n <= 8) ? PyDict_New() : _PyDict_NewPresized(n)) jpayne@68: #else jpayne@68: #define __Pyx_PyDict_NewPresized(n) PyDict_New() jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 || CYTHON_FUTURE_DIVISION jpayne@68: #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) jpayne@68: #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) jpayne@68: #else jpayne@68: #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) jpayne@68: #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX > 0x030600B4 && PY_VERSION_HEX < 0x030d0000 && CYTHON_USE_UNICODE_INTERNALS jpayne@68: #define __Pyx_PyDict_GetItemStrWithError(dict, name) _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash) jpayne@68: static CYTHON_INLINE PyObject * __Pyx_PyDict_GetItemStr(PyObject *dict, PyObject *name) { jpayne@68: PyObject *res = __Pyx_PyDict_GetItemStrWithError(dict, name); jpayne@68: if (res == NULL) PyErr_Clear(); jpayne@68: return res; jpayne@68: } jpayne@68: #elif PY_MAJOR_VERSION >= 3 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07020000) jpayne@68: #define __Pyx_PyDict_GetItemStrWithError PyDict_GetItemWithError jpayne@68: #define __Pyx_PyDict_GetItemStr PyDict_GetItem jpayne@68: #else jpayne@68: static CYTHON_INLINE PyObject * __Pyx_PyDict_GetItemStrWithError(PyObject *dict, PyObject *name) { jpayne@68: #if CYTHON_COMPILING_IN_PYPY jpayne@68: return PyDict_GetItem(dict, name); jpayne@68: #else jpayne@68: PyDictEntry *ep; jpayne@68: PyDictObject *mp = (PyDictObject*) dict; jpayne@68: long hash = ((PyStringObject *) name)->ob_shash; jpayne@68: assert(hash != -1); jpayne@68: ep = (mp->ma_lookup)(mp, name, hash); jpayne@68: if (ep == NULL) { jpayne@68: return NULL; jpayne@68: } jpayne@68: return ep->me_value; jpayne@68: #endif jpayne@68: } jpayne@68: #define __Pyx_PyDict_GetItemStr PyDict_GetItem jpayne@68: #endif jpayne@68: #if CYTHON_USE_TYPE_SLOTS jpayne@68: #define __Pyx_PyType_GetFlags(tp) (((PyTypeObject *)tp)->tp_flags) jpayne@68: #define __Pyx_PyType_HasFeature(type, feature) ((__Pyx_PyType_GetFlags(type) & (feature)) != 0) jpayne@68: #define __Pyx_PyObject_GetIterNextFunc(obj) (Py_TYPE(obj)->tp_iternext) jpayne@68: #else jpayne@68: #define __Pyx_PyType_GetFlags(tp) (PyType_GetFlags((PyTypeObject *)tp)) jpayne@68: #define __Pyx_PyType_HasFeature(type, feature) PyType_HasFeature(type, feature) jpayne@68: #define __Pyx_PyObject_GetIterNextFunc(obj) PyIter_Next jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #define __Pyx_SetItemOnTypeDict(tp, k, v) PyObject_GenericSetAttr((PyObject*)tp, k, v) jpayne@68: #else jpayne@68: #define __Pyx_SetItemOnTypeDict(tp, k, v) PyDict_SetItem(tp->tp_dict, k, v) jpayne@68: #endif jpayne@68: #if CYTHON_USE_TYPE_SPECS && PY_VERSION_HEX >= 0x03080000 jpayne@68: #define __Pyx_PyHeapTypeObject_GC_Del(obj) {\ jpayne@68: PyTypeObject *type = Py_TYPE((PyObject*)obj);\ jpayne@68: assert(__Pyx_PyType_HasFeature(type, Py_TPFLAGS_HEAPTYPE));\ jpayne@68: PyObject_GC_Del(obj);\ jpayne@68: Py_DECREF(type);\ jpayne@68: } jpayne@68: #else jpayne@68: #define __Pyx_PyHeapTypeObject_GC_Del(obj) PyObject_GC_Del(obj) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #define CYTHON_PEP393_ENABLED 1 jpayne@68: #define __Pyx_PyUnicode_READY(op) (0) jpayne@68: #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GetLength(u) jpayne@68: #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_ReadChar(u, i) jpayne@68: #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((void)u, 1114111U) jpayne@68: #define __Pyx_PyUnicode_KIND(u) ((void)u, (0)) jpayne@68: #define __Pyx_PyUnicode_DATA(u) ((void*)u) jpayne@68: #define __Pyx_PyUnicode_READ(k, d, i) ((void)k, PyUnicode_ReadChar((PyObject*)(d), i)) jpayne@68: #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GetLength(u)) jpayne@68: #elif PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) jpayne@68: #define CYTHON_PEP393_ENABLED 1 jpayne@68: #if PY_VERSION_HEX >= 0x030C0000 jpayne@68: #define __Pyx_PyUnicode_READY(op) (0) jpayne@68: #else jpayne@68: #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\ jpayne@68: 0 : _PyUnicode_Ready((PyObject *)(op))) jpayne@68: #endif jpayne@68: #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) jpayne@68: #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) jpayne@68: #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u) jpayne@68: #define __Pyx_PyUnicode_KIND(u) ((int)PyUnicode_KIND(u)) jpayne@68: #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) jpayne@68: #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) jpayne@68: #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, (Py_UCS4) ch) jpayne@68: #if PY_VERSION_HEX >= 0x030C0000 jpayne@68: #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_LENGTH(u)) jpayne@68: #else jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03090000 jpayne@68: #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : ((PyCompactUnicodeObject *)(u))->wstr_length)) jpayne@68: #else jpayne@68: #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u))) jpayne@68: #endif jpayne@68: #endif jpayne@68: #else jpayne@68: #define CYTHON_PEP393_ENABLED 0 jpayne@68: #define PyUnicode_1BYTE_KIND 1 jpayne@68: #define PyUnicode_2BYTE_KIND 2 jpayne@68: #define PyUnicode_4BYTE_KIND 4 jpayne@68: #define __Pyx_PyUnicode_READY(op) (0) jpayne@68: #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) jpayne@68: #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) jpayne@68: #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535U : 1114111U) jpayne@68: #define __Pyx_PyUnicode_KIND(u) ((int)sizeof(Py_UNICODE)) jpayne@68: #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) jpayne@68: #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) jpayne@68: #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = (Py_UNICODE) ch) jpayne@68: #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u)) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_PYPY jpayne@68: #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) jpayne@68: #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) jpayne@68: #else jpayne@68: #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) jpayne@68: #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\ jpayne@68: PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_PYPY jpayne@68: #if !defined(PyUnicode_DecodeUnicodeEscape) jpayne@68: #define PyUnicode_DecodeUnicodeEscape(s, size, errors) PyUnicode_Decode(s, size, "unicode_escape", errors) jpayne@68: #endif jpayne@68: #if !defined(PyUnicode_Contains) || (PY_MAJOR_VERSION == 2 && PYPY_VERSION_NUM < 0x07030500) jpayne@68: #undef PyUnicode_Contains jpayne@68: #define PyUnicode_Contains(u, s) PySequence_Contains(u, s) jpayne@68: #endif jpayne@68: #if !defined(PyByteArray_Check) jpayne@68: #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type) jpayne@68: #endif jpayne@68: #if !defined(PyObject_Format) jpayne@68: #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt) jpayne@68: #endif jpayne@68: #endif jpayne@68: #define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyString_Check(b) && !PyString_CheckExact(b)))) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) jpayne@68: #define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyUnicode_Check(b) && !PyUnicode_CheckExact(b)))) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b) jpayne@68: #else jpayne@68: #define __Pyx_PyString_Format(a, b) PyString_Format(a, b) jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII) jpayne@68: #define PyObject_ASCII(o) PyObject_Repr(o) jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: #define PyBaseString_Type PyUnicode_Type jpayne@68: #define PyStringObject PyUnicodeObject jpayne@68: #define PyString_Type PyUnicode_Type jpayne@68: #define PyString_Check PyUnicode_Check jpayne@68: #define PyString_CheckExact PyUnicode_CheckExact jpayne@68: #ifndef PyObject_Unicode jpayne@68: #define PyObject_Unicode PyObject_Str jpayne@68: #endif jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj) jpayne@68: #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj) jpayne@68: #else jpayne@68: #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj)) jpayne@68: #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj)) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: #define __Pyx_PySequence_ListKeepNew(obj)\ jpayne@68: (likely(PyList_CheckExact(obj) && Py_REFCNT(obj) == 1) ? __Pyx_NewRef(obj) : PySequence_List(obj)) jpayne@68: #else jpayne@68: #define __Pyx_PySequence_ListKeepNew(obj) PySequence_List(obj) jpayne@68: #endif jpayne@68: #ifndef PySet_CheckExact jpayne@68: #define PySet_CheckExact(obj) __Pyx_IS_TYPE(obj, &PySet_Type) jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030900A4 jpayne@68: #define __Pyx_SET_REFCNT(obj, refcnt) Py_SET_REFCNT(obj, refcnt) jpayne@68: #define __Pyx_SET_SIZE(obj, size) Py_SET_SIZE(obj, size) jpayne@68: #else jpayne@68: #define __Pyx_SET_REFCNT(obj, refcnt) Py_REFCNT(obj) = (refcnt) jpayne@68: #define __Pyx_SET_SIZE(obj, size) Py_SIZE(obj) = (size) jpayne@68: #endif jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: #define __Pyx_PySequence_ITEM(o, i) PySequence_ITEM(o, i) jpayne@68: #define __Pyx_PySequence_SIZE(seq) Py_SIZE(seq) jpayne@68: #define __Pyx_PyTuple_SET_ITEM(o, i, v) (PyTuple_SET_ITEM(o, i, v), (0)) jpayne@68: #define __Pyx_PyList_SET_ITEM(o, i, v) (PyList_SET_ITEM(o, i, v), (0)) jpayne@68: #define __Pyx_PyTuple_GET_SIZE(o) PyTuple_GET_SIZE(o) jpayne@68: #define __Pyx_PyList_GET_SIZE(o) PyList_GET_SIZE(o) jpayne@68: #define __Pyx_PySet_GET_SIZE(o) PySet_GET_SIZE(o) jpayne@68: #define __Pyx_PyBytes_GET_SIZE(o) PyBytes_GET_SIZE(o) jpayne@68: #define __Pyx_PyByteArray_GET_SIZE(o) PyByteArray_GET_SIZE(o) jpayne@68: #else jpayne@68: #define __Pyx_PySequence_ITEM(o, i) PySequence_GetItem(o, i) jpayne@68: #define __Pyx_PySequence_SIZE(seq) PySequence_Size(seq) jpayne@68: #define __Pyx_PyTuple_SET_ITEM(o, i, v) PyTuple_SetItem(o, i, v) jpayne@68: #define __Pyx_PyList_SET_ITEM(o, i, v) PyList_SetItem(o, i, v) jpayne@68: #define __Pyx_PyTuple_GET_SIZE(o) PyTuple_Size(o) jpayne@68: #define __Pyx_PyList_GET_SIZE(o) PyList_Size(o) jpayne@68: #define __Pyx_PySet_GET_SIZE(o) PySet_Size(o) jpayne@68: #define __Pyx_PyBytes_GET_SIZE(o) PyBytes_Size(o) jpayne@68: #define __Pyx_PyByteArray_GET_SIZE(o) PyByteArray_Size(o) jpayne@68: #endif jpayne@68: #if __PYX_LIMITED_VERSION_HEX >= 0x030d00A1 jpayne@68: #define __Pyx_PyImport_AddModuleRef(name) PyImport_AddModuleRef(name) jpayne@68: #else jpayne@68: static CYTHON_INLINE PyObject *__Pyx_PyImport_AddModuleRef(const char *name) { jpayne@68: PyObject *module = PyImport_AddModule(name); jpayne@68: Py_XINCREF(module); jpayne@68: return module; jpayne@68: } jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: #define PyIntObject PyLongObject jpayne@68: #define PyInt_Type PyLong_Type jpayne@68: #define PyInt_Check(op) PyLong_Check(op) jpayne@68: #define PyInt_CheckExact(op) PyLong_CheckExact(op) jpayne@68: #define __Pyx_Py3Int_Check(op) PyLong_Check(op) jpayne@68: #define __Pyx_Py3Int_CheckExact(op) PyLong_CheckExact(op) jpayne@68: #define PyInt_FromString PyLong_FromString jpayne@68: #define PyInt_FromUnicode PyLong_FromUnicode jpayne@68: #define PyInt_FromLong PyLong_FromLong jpayne@68: #define PyInt_FromSize_t PyLong_FromSize_t jpayne@68: #define PyInt_FromSsize_t PyLong_FromSsize_t jpayne@68: #define PyInt_AsLong PyLong_AsLong jpayne@68: #define PyInt_AS_LONG PyLong_AS_LONG jpayne@68: #define PyInt_AsSsize_t PyLong_AsSsize_t jpayne@68: #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask jpayne@68: #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask jpayne@68: #define PyNumber_Int PyNumber_Long jpayne@68: #else jpayne@68: #define __Pyx_Py3Int_Check(op) (PyLong_Check(op) || PyInt_Check(op)) jpayne@68: #define __Pyx_Py3Int_CheckExact(op) (PyLong_CheckExact(op) || PyInt_CheckExact(op)) jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: #define PyBoolObject PyLongObject jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY jpayne@68: #ifndef PyUnicode_InternFromString jpayne@68: #define PyUnicode_InternFromString(s) PyUnicode_FromString(s) jpayne@68: #endif jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x030200A4 jpayne@68: typedef long Py_hash_t; jpayne@68: #define __Pyx_PyInt_FromHash_t PyInt_FromLong jpayne@68: #define __Pyx_PyInt_AsHash_t __Pyx_PyIndex_AsHash_t jpayne@68: #else jpayne@68: #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t jpayne@68: #define __Pyx_PyInt_AsHash_t __Pyx_PyIndex_AsSsize_t jpayne@68: #endif jpayne@68: #if CYTHON_USE_ASYNC_SLOTS jpayne@68: #if PY_VERSION_HEX >= 0x030500B1 jpayne@68: #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods jpayne@68: #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async) jpayne@68: #else jpayne@68: #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved)) jpayne@68: #endif jpayne@68: #else jpayne@68: #define __Pyx_PyType_AsAsync(obj) NULL jpayne@68: #endif jpayne@68: #ifndef __Pyx_PyAsyncMethodsStruct jpayne@68: typedef struct { jpayne@68: unaryfunc am_await; jpayne@68: unaryfunc am_aiter; jpayne@68: unaryfunc am_anext; jpayne@68: } __Pyx_PyAsyncMethodsStruct; jpayne@68: #endif jpayne@68: jpayne@68: #if defined(_WIN32) || defined(WIN32) || defined(MS_WINDOWS) jpayne@68: #if !defined(_USE_MATH_DEFINES) jpayne@68: #define _USE_MATH_DEFINES jpayne@68: #endif jpayne@68: #endif jpayne@68: #include jpayne@68: #ifdef NAN jpayne@68: #define __PYX_NAN() ((float) NAN) jpayne@68: #else jpayne@68: static CYTHON_INLINE float __PYX_NAN() { jpayne@68: float value; jpayne@68: memset(&value, 0xFF, sizeof(value)); jpayne@68: return value; jpayne@68: } jpayne@68: #endif jpayne@68: #if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL) jpayne@68: #define __Pyx_truncl trunc jpayne@68: #else jpayne@68: #define __Pyx_truncl truncl jpayne@68: #endif jpayne@68: jpayne@68: #define __PYX_MARK_ERR_POS(f_index, lineno) \ jpayne@68: { __pyx_filename = __pyx_f[f_index]; (void)__pyx_filename; __pyx_lineno = lineno; (void)__pyx_lineno; __pyx_clineno = __LINE__; (void)__pyx_clineno; } jpayne@68: #define __PYX_ERR(f_index, lineno, Ln_error) \ jpayne@68: { __PYX_MARK_ERR_POS(f_index, lineno) goto Ln_error; } jpayne@68: jpayne@68: #ifdef CYTHON_EXTERN_C jpayne@68: #undef __PYX_EXTERN_C jpayne@68: #define __PYX_EXTERN_C CYTHON_EXTERN_C jpayne@68: #elif defined(__PYX_EXTERN_C) jpayne@68: #ifdef _MSC_VER jpayne@68: #pragma message ("Please do not define the '__PYX_EXTERN_C' macro externally. Use 'CYTHON_EXTERN_C' instead.") jpayne@68: #else jpayne@68: #warning Please do not define the '__PYX_EXTERN_C' macro externally. Use 'CYTHON_EXTERN_C' instead. jpayne@68: #endif jpayne@68: #else jpayne@68: #ifdef __cplusplus jpayne@68: #define __PYX_EXTERN_C extern "C" jpayne@68: #else jpayne@68: #define __PYX_EXTERN_C extern jpayne@68: #endif jpayne@68: #endif jpayne@68: jpayne@68: #define __PYX_HAVE__pysam__libcbgzf jpayne@68: #define __PYX_HAVE_API__pysam__libcbgzf jpayne@68: /* Early includes */ jpayne@68: #include jpayne@68: #include jpayne@68: #include jpayne@68: #include jpayne@68: #include jpayne@68: #include "stdarg.h" jpayne@68: #include "htslib/kstring.h" jpayne@68: #include "htslib_util.h" jpayne@68: #include "htslib/hfile.h" jpayne@68: #include "htslib/bgzf.h" jpayne@68: #include "htslib/hts.h" jpayne@68: #include "htslib/sam.h" jpayne@68: #include "htslib/faidx.h" jpayne@68: #include "htslib/tbx.h" jpayne@68: #include "htslib/vcf.h" jpayne@68: #include "htslib/vcfutils.h" jpayne@68: #include "htslib/cram.h" jpayne@68: #include jpayne@68: #include "pythread.h" jpayne@68: jpayne@68: #if CYTHON_COMPILING_IN_PYPY jpayne@68: #ifdef _MSC_VER jpayne@68: #pragma message ("This module uses CPython specific internals of 'array.array', which are not available in PyPy.") jpayne@68: #else jpayne@68: #warning This module uses CPython specific internals of 'array.array', which are not available in PyPy. jpayne@68: #endif jpayne@68: #endif jpayne@68: jpayne@68: #ifdef _OPENMP jpayne@68: #include jpayne@68: #endif /* _OPENMP */ jpayne@68: jpayne@68: #if defined(PYREX_WITHOUT_ASSERTIONS) && !defined(CYTHON_WITHOUT_ASSERTIONS) jpayne@68: #define CYTHON_WITHOUT_ASSERTIONS jpayne@68: #endif jpayne@68: jpayne@68: typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding; jpayne@68: const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; jpayne@68: jpayne@68: #define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 jpayne@68: #define __PYX_DEFAULT_STRING_ENCODING_IS_UTF8 0 jpayne@68: #define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT (PY_MAJOR_VERSION >= 3 && __PYX_DEFAULT_STRING_ENCODING_IS_UTF8) jpayne@68: #define __PYX_DEFAULT_STRING_ENCODING "" jpayne@68: #define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString jpayne@68: #define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize jpayne@68: #define __Pyx_uchar_cast(c) ((unsigned char)c) jpayne@68: #define __Pyx_long_cast(x) ((long)x) jpayne@68: #define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\ jpayne@68: (sizeof(type) < sizeof(Py_ssize_t)) ||\ jpayne@68: (sizeof(type) > sizeof(Py_ssize_t) &&\ jpayne@68: likely(v < (type)PY_SSIZE_T_MAX ||\ jpayne@68: v == (type)PY_SSIZE_T_MAX) &&\ jpayne@68: (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\ jpayne@68: v == (type)PY_SSIZE_T_MIN))) ||\ jpayne@68: (sizeof(type) == sizeof(Py_ssize_t) &&\ jpayne@68: (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\ jpayne@68: v == (type)PY_SSIZE_T_MAX))) ) jpayne@68: static CYTHON_INLINE int __Pyx_is_valid_index(Py_ssize_t i, Py_ssize_t limit) { jpayne@68: return (size_t) i < (size_t) limit; jpayne@68: } jpayne@68: #if defined (__cplusplus) && __cplusplus >= 201103L jpayne@68: #include jpayne@68: #define __Pyx_sst_abs(value) std::abs(value) jpayne@68: #elif SIZEOF_INT >= SIZEOF_SIZE_T jpayne@68: #define __Pyx_sst_abs(value) abs(value) jpayne@68: #elif SIZEOF_LONG >= SIZEOF_SIZE_T jpayne@68: #define __Pyx_sst_abs(value) labs(value) jpayne@68: #elif defined (_MSC_VER) jpayne@68: #define __Pyx_sst_abs(value) ((Py_ssize_t)_abs64(value)) jpayne@68: #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L jpayne@68: #define __Pyx_sst_abs(value) llabs(value) jpayne@68: #elif defined (__GNUC__) jpayne@68: #define __Pyx_sst_abs(value) __builtin_llabs(value) jpayne@68: #else jpayne@68: #define __Pyx_sst_abs(value) ((value<0) ? -value : value) jpayne@68: #endif jpayne@68: static CYTHON_INLINE Py_ssize_t __Pyx_ssize_strlen(const char *s); jpayne@68: static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*); jpayne@68: static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyByteArray_FromString(const char*); jpayne@68: #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) jpayne@68: #define __Pyx_PyBytes_FromString PyBytes_FromString jpayne@68: #define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString jpayne@68: #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize jpayne@68: #else jpayne@68: #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString jpayne@68: #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize jpayne@68: #endif jpayne@68: #define __Pyx_PyBytes_AsWritableString(s) ((char*) PyBytes_AS_STRING(s)) jpayne@68: #define __Pyx_PyBytes_AsWritableSString(s) ((signed char*) PyBytes_AS_STRING(s)) jpayne@68: #define __Pyx_PyBytes_AsWritableUString(s) ((unsigned char*) PyBytes_AS_STRING(s)) jpayne@68: #define __Pyx_PyBytes_AsString(s) ((const char*) PyBytes_AS_STRING(s)) jpayne@68: #define __Pyx_PyBytes_AsSString(s) ((const signed char*) PyBytes_AS_STRING(s)) jpayne@68: #define __Pyx_PyBytes_AsUString(s) ((const unsigned char*) PyBytes_AS_STRING(s)) jpayne@68: #define __Pyx_PyObject_AsWritableString(s) ((char*)(__pyx_uintptr_t) __Pyx_PyObject_AsString(s)) jpayne@68: #define __Pyx_PyObject_AsWritableSString(s) ((signed char*)(__pyx_uintptr_t) __Pyx_PyObject_AsString(s)) jpayne@68: #define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*)(__pyx_uintptr_t) __Pyx_PyObject_AsString(s)) jpayne@68: #define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s)) jpayne@68: #define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s)) jpayne@68: #define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) jpayne@68: #define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) jpayne@68: #define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) jpayne@68: #define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s) jpayne@68: #define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s) jpayne@68: #define __Pyx_PyUnicode_FromOrdinal(o) PyUnicode_FromOrdinal((int)o) jpayne@68: #define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode jpayne@68: #define __Pyx_NewRef(obj) (Py_INCREF(obj), obj) jpayne@68: #define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None) jpayne@68: static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b); jpayne@68: static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); jpayne@68: static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject*); jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x); jpayne@68: #define __Pyx_PySequence_Tuple(obj)\ jpayne@68: (likely(PyTuple_CheckExact(obj)) ? __Pyx_NewRef(obj) : PySequence_Tuple(obj)) jpayne@68: static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); jpayne@68: static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); jpayne@68: static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject*); jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: #define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) jpayne@68: #else jpayne@68: #define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) jpayne@68: #endif jpayne@68: #define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: #define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x)) jpayne@68: #else jpayne@68: #define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x)) jpayne@68: #endif jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: #if PY_VERSION_HEX >= 0x030C00A7 jpayne@68: #ifndef _PyLong_SIGN_MASK jpayne@68: #define _PyLong_SIGN_MASK 3 jpayne@68: #endif jpayne@68: #ifndef _PyLong_NON_SIZE_BITS jpayne@68: #define _PyLong_NON_SIZE_BITS 3 jpayne@68: #endif jpayne@68: #define __Pyx_PyLong_Sign(x) (((PyLongObject*)x)->long_value.lv_tag & _PyLong_SIGN_MASK) jpayne@68: #define __Pyx_PyLong_IsNeg(x) ((__Pyx_PyLong_Sign(x) & 2) != 0) jpayne@68: #define __Pyx_PyLong_IsNonNeg(x) (!__Pyx_PyLong_IsNeg(x)) jpayne@68: #define __Pyx_PyLong_IsZero(x) (__Pyx_PyLong_Sign(x) & 1) jpayne@68: #define __Pyx_PyLong_IsPos(x) (__Pyx_PyLong_Sign(x) == 0) jpayne@68: #define __Pyx_PyLong_CompactValueUnsigned(x) (__Pyx_PyLong_Digits(x)[0]) jpayne@68: #define __Pyx_PyLong_DigitCount(x) ((Py_ssize_t) (((PyLongObject*)x)->long_value.lv_tag >> _PyLong_NON_SIZE_BITS)) jpayne@68: #define __Pyx_PyLong_SignedDigitCount(x)\ jpayne@68: ((1 - (Py_ssize_t) __Pyx_PyLong_Sign(x)) * __Pyx_PyLong_DigitCount(x)) jpayne@68: #if defined(PyUnstable_Long_IsCompact) && defined(PyUnstable_Long_CompactValue) jpayne@68: #define __Pyx_PyLong_IsCompact(x) PyUnstable_Long_IsCompact((PyLongObject*) x) jpayne@68: #define __Pyx_PyLong_CompactValue(x) PyUnstable_Long_CompactValue((PyLongObject*) x) jpayne@68: #else jpayne@68: #define __Pyx_PyLong_IsCompact(x) (((PyLongObject*)x)->long_value.lv_tag < (2 << _PyLong_NON_SIZE_BITS)) jpayne@68: #define __Pyx_PyLong_CompactValue(x) ((1 - (Py_ssize_t) __Pyx_PyLong_Sign(x)) * (Py_ssize_t) __Pyx_PyLong_Digits(x)[0]) jpayne@68: #endif jpayne@68: typedef Py_ssize_t __Pyx_compact_pylong; jpayne@68: typedef size_t __Pyx_compact_upylong; jpayne@68: #else jpayne@68: #define __Pyx_PyLong_IsNeg(x) (Py_SIZE(x) < 0) jpayne@68: #define __Pyx_PyLong_IsNonNeg(x) (Py_SIZE(x) >= 0) jpayne@68: #define __Pyx_PyLong_IsZero(x) (Py_SIZE(x) == 0) jpayne@68: #define __Pyx_PyLong_IsPos(x) (Py_SIZE(x) > 0) jpayne@68: #define __Pyx_PyLong_CompactValueUnsigned(x) ((Py_SIZE(x) == 0) ? 0 : __Pyx_PyLong_Digits(x)[0]) jpayne@68: #define __Pyx_PyLong_DigitCount(x) __Pyx_sst_abs(Py_SIZE(x)) jpayne@68: #define __Pyx_PyLong_SignedDigitCount(x) Py_SIZE(x) jpayne@68: #define __Pyx_PyLong_IsCompact(x) (Py_SIZE(x) == 0 || Py_SIZE(x) == 1 || Py_SIZE(x) == -1) jpayne@68: #define __Pyx_PyLong_CompactValue(x)\ jpayne@68: ((Py_SIZE(x) == 0) ? (sdigit) 0 : ((Py_SIZE(x) < 0) ? -(sdigit)__Pyx_PyLong_Digits(x)[0] : (sdigit)__Pyx_PyLong_Digits(x)[0])) jpayne@68: typedef sdigit __Pyx_compact_pylong; jpayne@68: typedef digit __Pyx_compact_upylong; jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030C00A5 jpayne@68: #define __Pyx_PyLong_Digits(x) (((PyLongObject*)x)->long_value.ob_digit) jpayne@68: #else jpayne@68: #define __Pyx_PyLong_Digits(x) (((PyLongObject*)x)->ob_digit) jpayne@68: #endif jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII jpayne@68: #include jpayne@68: static int __Pyx_sys_getdefaultencoding_not_ascii; jpayne@68: static int __Pyx_init_sys_getdefaultencoding_params(void) { jpayne@68: PyObject* sys; jpayne@68: PyObject* default_encoding = NULL; jpayne@68: PyObject* ascii_chars_u = NULL; jpayne@68: PyObject* ascii_chars_b = NULL; jpayne@68: const char* default_encoding_c; jpayne@68: sys = PyImport_ImportModule("sys"); jpayne@68: if (!sys) goto bad; jpayne@68: default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL); jpayne@68: Py_DECREF(sys); jpayne@68: if (!default_encoding) goto bad; jpayne@68: default_encoding_c = PyBytes_AsString(default_encoding); jpayne@68: if (!default_encoding_c) goto bad; jpayne@68: if (strcmp(default_encoding_c, "ascii") == 0) { jpayne@68: __Pyx_sys_getdefaultencoding_not_ascii = 0; jpayne@68: } else { jpayne@68: char ascii_chars[128]; jpayne@68: int c; jpayne@68: for (c = 0; c < 128; c++) { jpayne@68: ascii_chars[c] = (char) c; jpayne@68: } jpayne@68: __Pyx_sys_getdefaultencoding_not_ascii = 1; jpayne@68: ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL); jpayne@68: if (!ascii_chars_u) goto bad; jpayne@68: ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL); jpayne@68: if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) { jpayne@68: PyErr_Format( jpayne@68: PyExc_ValueError, jpayne@68: "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.", jpayne@68: default_encoding_c); jpayne@68: goto bad; jpayne@68: } jpayne@68: Py_DECREF(ascii_chars_u); jpayne@68: Py_DECREF(ascii_chars_b); jpayne@68: } jpayne@68: Py_DECREF(default_encoding); jpayne@68: return 0; jpayne@68: bad: jpayne@68: Py_XDECREF(default_encoding); jpayne@68: Py_XDECREF(ascii_chars_u); jpayne@68: Py_XDECREF(ascii_chars_b); jpayne@68: return -1; jpayne@68: } jpayne@68: #endif jpayne@68: #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3 jpayne@68: #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL) jpayne@68: #else jpayne@68: #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) jpayne@68: #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT jpayne@68: #include jpayne@68: static char* __PYX_DEFAULT_STRING_ENCODING; jpayne@68: static int __Pyx_init_sys_getdefaultencoding_params(void) { jpayne@68: PyObject* sys; jpayne@68: PyObject* default_encoding = NULL; jpayne@68: char* default_encoding_c; jpayne@68: sys = PyImport_ImportModule("sys"); jpayne@68: if (!sys) goto bad; jpayne@68: default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); jpayne@68: Py_DECREF(sys); jpayne@68: if (!default_encoding) goto bad; jpayne@68: default_encoding_c = PyBytes_AsString(default_encoding); jpayne@68: if (!default_encoding_c) goto bad; jpayne@68: __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c) + 1); jpayne@68: if (!__PYX_DEFAULT_STRING_ENCODING) goto bad; jpayne@68: strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c); jpayne@68: Py_DECREF(default_encoding); jpayne@68: return 0; jpayne@68: bad: jpayne@68: Py_XDECREF(default_encoding); jpayne@68: return -1; jpayne@68: } jpayne@68: #endif jpayne@68: #endif jpayne@68: jpayne@68: jpayne@68: /* Test for GCC > 2.95 */ jpayne@68: #if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))) jpayne@68: #define likely(x) __builtin_expect(!!(x), 1) jpayne@68: #define unlikely(x) __builtin_expect(!!(x), 0) jpayne@68: #else /* !__GNUC__ or GCC < 2.95 */ jpayne@68: #define likely(x) (x) jpayne@68: #define unlikely(x) (x) jpayne@68: #endif /* __GNUC__ */ jpayne@68: static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; } jpayne@68: jpayne@68: #if !CYTHON_USE_MODULE_STATE jpayne@68: static PyObject *__pyx_m = NULL; jpayne@68: #endif jpayne@68: static int __pyx_lineno; jpayne@68: static int __pyx_clineno = 0; jpayne@68: static const char * __pyx_cfilenm = __FILE__; jpayne@68: static const char *__pyx_filename; jpayne@68: jpayne@68: /* #### Code section: filename_table ### */ jpayne@68: jpayne@68: static const char *__pyx_f[] = { jpayne@68: "pysam/libcbgzf.pyx", jpayne@68: "", jpayne@68: "contextvars.pxd", jpayne@68: "array.pxd", jpayne@68: "pysam/libchtslib.pxd", jpayne@68: "type.pxd", jpayne@68: "bool.pxd", jpayne@68: "complex.pxd", jpayne@68: }; jpayne@68: /* #### Code section: utility_code_proto_before_types ### */ jpayne@68: /* ForceInitThreads.proto */ jpayne@68: #ifndef __PYX_FORCE_INIT_THREADS jpayne@68: #define __PYX_FORCE_INIT_THREADS 0 jpayne@68: #endif jpayne@68: jpayne@68: /* #### Code section: numeric_typedefs ### */ jpayne@68: /* #### Code section: complex_type_declarations ### */ jpayne@68: /* #### Code section: type_declarations ### */ jpayne@68: jpayne@68: /*--- Type declarations ---*/ jpayne@68: #ifndef _ARRAYARRAY_H jpayne@68: struct arrayobject; jpayne@68: typedef struct arrayobject arrayobject; jpayne@68: #endif jpayne@68: struct __pyx_obj_5pysam_10libchtslib_HTSFile; jpayne@68: struct __pyx_obj_5pysam_8libcbgzf_BGZFile; jpayne@68: struct __pyx_opt_args_7cpython_11contextvars_get_value; jpayne@68: struct __pyx_opt_args_7cpython_11contextvars_get_value_no_default; jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":112 jpayne@68: * jpayne@68: * jpayne@68: * cdef inline object get_value(var, default_value=None): # <<<<<<<<<<<<<< jpayne@68: * """Return a new reference to the value of the context variable, jpayne@68: * or the default value of the context variable, jpayne@68: */ jpayne@68: struct __pyx_opt_args_7cpython_11contextvars_get_value { jpayne@68: int __pyx_n; jpayne@68: PyObject *default_value; jpayne@68: }; jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":129 jpayne@68: * jpayne@68: * jpayne@68: * cdef inline object get_value_no_default(var, default_value=None): # <<<<<<<<<<<<<< jpayne@68: * """Return a new reference to the value of the context variable, jpayne@68: * or the provided default value if no such value was found. jpayne@68: */ jpayne@68: struct __pyx_opt_args_7cpython_11contextvars_get_value_no_default { jpayne@68: int __pyx_n; jpayne@68: PyObject *default_value; jpayne@68: }; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_parse_region; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_qualitystring_to_array; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_array_to_qualitystring; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_qualities_to_qualitystring; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_charptr_to_bytes; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str_w_len; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_force_str; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_force_bytes; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_decode_bytes; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":8 jpayne@68: * from cpython cimport array as c_array jpayne@68: * jpayne@68: * cpdef parse_region(contig=*, start=*, stop=*, region=*, reference=*, end=*) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef int libc_whence_from_io(int whence) jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_parse_region { jpayne@68: int __pyx_n; jpayne@68: PyObject *contig; jpayne@68: PyObject *start; jpayne@68: PyObject *stop; jpayne@68: PyObject *region; jpayne@68: PyObject *reference; jpayne@68: PyObject *end; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":15 jpayne@68: * # Utility functions for quality string conversions jpayne@68: * jpayne@68: * cpdef c_array.array qualitystring_to_array(input_str, int offset=*) # <<<<<<<<<<<<<< jpayne@68: * cpdef array_to_qualitystring(c_array.array arr, int offset=*) jpayne@68: * cpdef qualities_to_qualitystring(qualities, int offset=*) jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_qualitystring_to_array { jpayne@68: int __pyx_n; jpayne@68: int offset; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":16 jpayne@68: * jpayne@68: * cpdef c_array.array qualitystring_to_array(input_str, int offset=*) jpayne@68: * cpdef array_to_qualitystring(c_array.array arr, int offset=*) # <<<<<<<<<<<<<< jpayne@68: * cpdef qualities_to_qualitystring(qualities, int offset=*) jpayne@68: * jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_array_to_qualitystring { jpayne@68: int __pyx_n; jpayne@68: int offset; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":17 jpayne@68: * cpdef c_array.array qualitystring_to_array(input_str, int offset=*) jpayne@68: * cpdef array_to_qualitystring(c_array.array arr, int offset=*) jpayne@68: * cpdef qualities_to_qualitystring(qualities, int offset=*) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * ######################################################################## jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_qualities_to_qualitystring { jpayne@68: int __pyx_n; jpayne@68: int offset; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":29 jpayne@68: * ## Python 3 compatibility functions jpayne@68: * ######################################################################## jpayne@68: * cdef charptr_to_str(const char *s, encoding=*, errors=*) # <<<<<<<<<<<<<< jpayne@68: * cdef bytes charptr_to_bytes(const char *s, encoding=*, errors=*) jpayne@68: * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*) jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str { jpayne@68: int __pyx_n; jpayne@68: PyObject *encoding; jpayne@68: PyObject *errors; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":30 jpayne@68: * ######################################################################## jpayne@68: * cdef charptr_to_str(const char *s, encoding=*, errors=*) jpayne@68: * cdef bytes charptr_to_bytes(const char *s, encoding=*, errors=*) # <<<<<<<<<<<<<< jpayne@68: * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*) jpayne@68: * cdef force_str(object s, encoding=*, errors=*) jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_charptr_to_bytes { jpayne@68: int __pyx_n; jpayne@68: PyObject *encoding; jpayne@68: PyObject *errors; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":31 jpayne@68: * cdef charptr_to_str(const char *s, encoding=*, errors=*) jpayne@68: * cdef bytes charptr_to_bytes(const char *s, encoding=*, errors=*) jpayne@68: * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*) # <<<<<<<<<<<<<< jpayne@68: * cdef force_str(object s, encoding=*, errors=*) jpayne@68: * cdef bytes force_bytes(object s, encoding=*, errors=*) jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str_w_len { jpayne@68: int __pyx_n; jpayne@68: PyObject *encoding; jpayne@68: PyObject *errors; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":32 jpayne@68: * cdef bytes charptr_to_bytes(const char *s, encoding=*, errors=*) jpayne@68: * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*) jpayne@68: * cdef force_str(object s, encoding=*, errors=*) # <<<<<<<<<<<<<< jpayne@68: * cdef bytes force_bytes(object s, encoding=*, errors=*) jpayne@68: * cdef decode_bytes(bytes s, encoding=*, errors=*) jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_force_str { jpayne@68: int __pyx_n; jpayne@68: PyObject *encoding; jpayne@68: PyObject *errors; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":33 jpayne@68: * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*) jpayne@68: * cdef force_str(object s, encoding=*, errors=*) jpayne@68: * cdef bytes force_bytes(object s, encoding=*, errors=*) # <<<<<<<<<<<<<< jpayne@68: * cdef decode_bytes(bytes s, encoding=*, errors=*) jpayne@68: * cdef bytes encode_filename(object filename) jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_force_bytes { jpayne@68: int __pyx_n; jpayne@68: PyObject *encoding; jpayne@68: PyObject *errors; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":34 jpayne@68: * cdef force_str(object s, encoding=*, errors=*) jpayne@68: * cdef bytes force_bytes(object s, encoding=*, errors=*) jpayne@68: * cdef decode_bytes(bytes s, encoding=*, errors=*) # <<<<<<<<<<<<<< jpayne@68: * cdef bytes encode_filename(object filename) jpayne@68: * cdef from_string_and_size(const char *s, size_t length) jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_decode_bytes { jpayne@68: int __pyx_n; jpayne@68: PyObject *encoding; jpayne@68: PyObject *errors; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libchtslib.pxd":2706 jpayne@68: * jpayne@68: * jpayne@68: * cdef class HTSFile(object): # <<<<<<<<<<<<<< jpayne@68: * cdef htsFile *htsfile # pointer to htsFile structure jpayne@68: * cdef int64_t start_offset # BGZF offset of first record jpayne@68: */ jpayne@68: struct __pyx_obj_5pysam_10libchtslib_HTSFile { jpayne@68: PyObject_HEAD jpayne@68: struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile *__pyx_vtab; jpayne@68: htsFile *htsfile; jpayne@68: int64_t start_offset; jpayne@68: PyObject *filename; jpayne@68: PyObject *mode; jpayne@68: PyObject *threads; jpayne@68: PyObject *index_filename; jpayne@68: int is_stream; jpayne@68: int is_remote; jpayne@68: int duplicate_filehandle; jpayne@68: }; jpayne@68: jpayne@68: jpayne@68: /* "pysam/libcbgzf.pxd":5 jpayne@68: * from pysam.libchtslib cimport BGZF jpayne@68: * jpayne@68: * cdef class BGZFile(object): # <<<<<<<<<<<<<< jpayne@68: * cdef BGZF *bgzf jpayne@68: * cdef readonly object name, index jpayne@68: */ jpayne@68: struct __pyx_obj_5pysam_8libcbgzf_BGZFile { jpayne@68: PyObject_HEAD jpayne@68: BGZF *bgzf; jpayne@68: PyObject *name; jpayne@68: PyObject *index; jpayne@68: }; jpayne@68: jpayne@68: jpayne@68: jpayne@68: /* "pysam/libchtslib.pxd":2706 jpayne@68: * jpayne@68: * jpayne@68: * cdef class HTSFile(object): # <<<<<<<<<<<<<< jpayne@68: * cdef htsFile *htsfile # pointer to htsFile structure jpayne@68: * cdef int64_t start_offset # BGZF offset of first record jpayne@68: */ jpayne@68: jpayne@68: struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile { jpayne@68: htsFile *(*_open_htsfile)(struct __pyx_obj_5pysam_10libchtslib_HTSFile *); jpayne@68: }; jpayne@68: static struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile *__pyx_vtabptr_5pysam_10libchtslib_HTSFile; jpayne@68: /* #### Code section: utility_code_proto ### */ jpayne@68: jpayne@68: /* --- Runtime support code (head) --- */ jpayne@68: /* Refnanny.proto */ jpayne@68: #ifndef CYTHON_REFNANNY jpayne@68: #define CYTHON_REFNANNY 0 jpayne@68: #endif jpayne@68: #if CYTHON_REFNANNY jpayne@68: typedef struct { jpayne@68: void (*INCREF)(void*, PyObject*, Py_ssize_t); jpayne@68: void (*DECREF)(void*, PyObject*, Py_ssize_t); jpayne@68: void (*GOTREF)(void*, PyObject*, Py_ssize_t); jpayne@68: void (*GIVEREF)(void*, PyObject*, Py_ssize_t); jpayne@68: void* (*SetupContext)(const char*, Py_ssize_t, const char*); jpayne@68: void (*FinishContext)(void**); jpayne@68: } __Pyx_RefNannyAPIStruct; jpayne@68: static __Pyx_RefNannyAPIStruct *__Pyx_RefNanny = NULL; jpayne@68: static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname); jpayne@68: #define __Pyx_RefNannyDeclarations void *__pyx_refnanny = NULL; jpayne@68: #ifdef WITH_THREAD jpayne@68: #define __Pyx_RefNannySetupContext(name, acquire_gil)\ jpayne@68: if (acquire_gil) {\ jpayne@68: PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();\ jpayne@68: __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), (__LINE__), (__FILE__));\ jpayne@68: PyGILState_Release(__pyx_gilstate_save);\ jpayne@68: } else {\ jpayne@68: __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), (__LINE__), (__FILE__));\ jpayne@68: } jpayne@68: #define __Pyx_RefNannyFinishContextNogil() {\ jpayne@68: PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();\ jpayne@68: __Pyx_RefNannyFinishContext();\ jpayne@68: PyGILState_Release(__pyx_gilstate_save);\ jpayne@68: } jpayne@68: #else jpayne@68: #define __Pyx_RefNannySetupContext(name, acquire_gil)\ jpayne@68: __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), (__LINE__), (__FILE__)) jpayne@68: #define __Pyx_RefNannyFinishContextNogil() __Pyx_RefNannyFinishContext() jpayne@68: #endif jpayne@68: #define __Pyx_RefNannyFinishContextNogil() {\ jpayne@68: PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();\ jpayne@68: __Pyx_RefNannyFinishContext();\ jpayne@68: PyGILState_Release(__pyx_gilstate_save);\ jpayne@68: } jpayne@68: #define __Pyx_RefNannyFinishContext()\ jpayne@68: __Pyx_RefNanny->FinishContext(&__pyx_refnanny) jpayne@68: #define __Pyx_INCREF(r) __Pyx_RefNanny->INCREF(__pyx_refnanny, (PyObject *)(r), (__LINE__)) jpayne@68: #define __Pyx_DECREF(r) __Pyx_RefNanny->DECREF(__pyx_refnanny, (PyObject *)(r), (__LINE__)) jpayne@68: #define __Pyx_GOTREF(r) __Pyx_RefNanny->GOTREF(__pyx_refnanny, (PyObject *)(r), (__LINE__)) jpayne@68: #define __Pyx_GIVEREF(r) __Pyx_RefNanny->GIVEREF(__pyx_refnanny, (PyObject *)(r), (__LINE__)) jpayne@68: #define __Pyx_XINCREF(r) do { if((r) == NULL); else {__Pyx_INCREF(r); }} while(0) jpayne@68: #define __Pyx_XDECREF(r) do { if((r) == NULL); else {__Pyx_DECREF(r); }} while(0) jpayne@68: #define __Pyx_XGOTREF(r) do { if((r) == NULL); else {__Pyx_GOTREF(r); }} while(0) jpayne@68: #define __Pyx_XGIVEREF(r) do { if((r) == NULL); else {__Pyx_GIVEREF(r);}} while(0) jpayne@68: #else jpayne@68: #define __Pyx_RefNannyDeclarations jpayne@68: #define __Pyx_RefNannySetupContext(name, acquire_gil) jpayne@68: #define __Pyx_RefNannyFinishContextNogil() jpayne@68: #define __Pyx_RefNannyFinishContext() jpayne@68: #define __Pyx_INCREF(r) Py_INCREF(r) jpayne@68: #define __Pyx_DECREF(r) Py_DECREF(r) jpayne@68: #define __Pyx_GOTREF(r) jpayne@68: #define __Pyx_GIVEREF(r) jpayne@68: #define __Pyx_XINCREF(r) Py_XINCREF(r) jpayne@68: #define __Pyx_XDECREF(r) Py_XDECREF(r) jpayne@68: #define __Pyx_XGOTREF(r) jpayne@68: #define __Pyx_XGIVEREF(r) jpayne@68: #endif jpayne@68: #define __Pyx_Py_XDECREF_SET(r, v) do {\ jpayne@68: PyObject *tmp = (PyObject *) r;\ jpayne@68: r = v; Py_XDECREF(tmp);\ jpayne@68: } while (0) jpayne@68: #define __Pyx_XDECREF_SET(r, v) do {\ jpayne@68: PyObject *tmp = (PyObject *) r;\ jpayne@68: r = v; __Pyx_XDECREF(tmp);\ jpayne@68: } while (0) jpayne@68: #define __Pyx_DECREF_SET(r, v) do {\ jpayne@68: PyObject *tmp = (PyObject *) r;\ jpayne@68: r = v; __Pyx_DECREF(tmp);\ jpayne@68: } while (0) jpayne@68: #define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0) jpayne@68: #define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0) jpayne@68: jpayne@68: /* PyErrExceptionMatches.proto */ jpayne@68: #if CYTHON_FAST_THREAD_STATE jpayne@68: #define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err) jpayne@68: static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err); jpayne@68: #else jpayne@68: #define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err) jpayne@68: #endif jpayne@68: jpayne@68: /* PyThreadStateGet.proto */ jpayne@68: #if CYTHON_FAST_THREAD_STATE jpayne@68: #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate; jpayne@68: #define __Pyx_PyThreadState_assign __pyx_tstate = __Pyx_PyThreadState_Current; jpayne@68: #if PY_VERSION_HEX >= 0x030C00A6 jpayne@68: #define __Pyx_PyErr_Occurred() (__pyx_tstate->current_exception != NULL) jpayne@68: #define __Pyx_PyErr_CurrentExceptionType() (__pyx_tstate->current_exception ? (PyObject*) Py_TYPE(__pyx_tstate->current_exception) : (PyObject*) NULL) jpayne@68: #else jpayne@68: #define __Pyx_PyErr_Occurred() (__pyx_tstate->curexc_type != NULL) jpayne@68: #define __Pyx_PyErr_CurrentExceptionType() (__pyx_tstate->curexc_type) jpayne@68: #endif jpayne@68: #else jpayne@68: #define __Pyx_PyThreadState_declare jpayne@68: #define __Pyx_PyThreadState_assign jpayne@68: #define __Pyx_PyErr_Occurred() (PyErr_Occurred() != NULL) jpayne@68: #define __Pyx_PyErr_CurrentExceptionType() PyErr_Occurred() jpayne@68: #endif jpayne@68: jpayne@68: /* PyErrFetchRestore.proto */ jpayne@68: #if CYTHON_FAST_THREAD_STATE jpayne@68: #define __Pyx_PyErr_Clear() __Pyx_ErrRestore(NULL, NULL, NULL) jpayne@68: #define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb) jpayne@68: #define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb) jpayne@68: #define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb) jpayne@68: #define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb) jpayne@68: static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); jpayne@68: static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A6 jpayne@68: #define __Pyx_PyErr_SetNone(exc) (Py_INCREF(exc), __Pyx_ErrRestore((exc), NULL, NULL)) jpayne@68: #else jpayne@68: #define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc) jpayne@68: #endif jpayne@68: #else jpayne@68: #define __Pyx_PyErr_Clear() PyErr_Clear() jpayne@68: #define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc) jpayne@68: #define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb) jpayne@68: #define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb) jpayne@68: #define __Pyx_ErrRestoreInState(tstate, type, value, tb) PyErr_Restore(type, value, tb) jpayne@68: #define __Pyx_ErrFetchInState(tstate, type, value, tb) PyErr_Fetch(type, value, tb) jpayne@68: #define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb) jpayne@68: #define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb) jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectGetAttrStr.proto */ jpayne@68: #if CYTHON_USE_TYPE_SLOTS jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name); jpayne@68: #else jpayne@68: #define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n) jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectGetAttrStrNoError.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name); jpayne@68: jpayne@68: /* GetBuiltinName.proto */ jpayne@68: static PyObject *__Pyx_GetBuiltinName(PyObject *name); jpayne@68: jpayne@68: /* TupleAndListFromArray.proto */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyList_FromArray(PyObject *const *src, Py_ssize_t n); jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyTuple_FromArray(PyObject *const *src, Py_ssize_t n); jpayne@68: #endif jpayne@68: jpayne@68: /* IncludeStringH.proto */ jpayne@68: #include jpayne@68: jpayne@68: /* BytesEquals.proto */ jpayne@68: static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals); jpayne@68: jpayne@68: /* UnicodeEquals.proto */ jpayne@68: static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals); jpayne@68: jpayne@68: /* fastcall.proto */ jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: #define __Pyx_Arg_VARARGS(args, i) PySequence_GetItem(args, i) jpayne@68: #elif CYTHON_ASSUME_SAFE_MACROS jpayne@68: #define __Pyx_Arg_VARARGS(args, i) PyTuple_GET_ITEM(args, i) jpayne@68: #else jpayne@68: #define __Pyx_Arg_VARARGS(args, i) PyTuple_GetItem(args, i) jpayne@68: #endif jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: #define __Pyx_Arg_NewRef_VARARGS(arg) __Pyx_NewRef(arg) jpayne@68: #define __Pyx_Arg_XDECREF_VARARGS(arg) Py_XDECREF(arg) jpayne@68: #else jpayne@68: #define __Pyx_Arg_NewRef_VARARGS(arg) arg jpayne@68: #define __Pyx_Arg_XDECREF_VARARGS(arg) jpayne@68: #endif jpayne@68: #define __Pyx_NumKwargs_VARARGS(kwds) PyDict_Size(kwds) jpayne@68: #define __Pyx_KwValues_VARARGS(args, nargs) NULL jpayne@68: #define __Pyx_GetKwValue_VARARGS(kw, kwvalues, s) __Pyx_PyDict_GetItemStrWithError(kw, s) jpayne@68: #define __Pyx_KwargsAsDict_VARARGS(kw, kwvalues) PyDict_Copy(kw) jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: #define __Pyx_Arg_FASTCALL(args, i) args[i] jpayne@68: #define __Pyx_NumKwargs_FASTCALL(kwds) PyTuple_GET_SIZE(kwds) jpayne@68: #define __Pyx_KwValues_FASTCALL(args, nargs) ((args) + (nargs)) jpayne@68: static CYTHON_INLINE PyObject * __Pyx_GetKwValue_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues, PyObject *s); jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 jpayne@68: CYTHON_UNUSED static PyObject *__Pyx_KwargsAsDict_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues); jpayne@68: #else jpayne@68: #define __Pyx_KwargsAsDict_FASTCALL(kw, kwvalues) _PyStack_AsDict(kwvalues, kw) jpayne@68: #endif jpayne@68: #define __Pyx_Arg_NewRef_FASTCALL(arg) arg /* no-op, __Pyx_Arg_FASTCALL is direct and this needs jpayne@68: to have the same reference counting */ jpayne@68: #define __Pyx_Arg_XDECREF_FASTCALL(arg) jpayne@68: #else jpayne@68: #define __Pyx_Arg_FASTCALL __Pyx_Arg_VARARGS jpayne@68: #define __Pyx_NumKwargs_FASTCALL __Pyx_NumKwargs_VARARGS jpayne@68: #define __Pyx_KwValues_FASTCALL __Pyx_KwValues_VARARGS jpayne@68: #define __Pyx_GetKwValue_FASTCALL __Pyx_GetKwValue_VARARGS jpayne@68: #define __Pyx_KwargsAsDict_FASTCALL __Pyx_KwargsAsDict_VARARGS jpayne@68: #define __Pyx_Arg_NewRef_FASTCALL(arg) __Pyx_Arg_NewRef_VARARGS(arg) jpayne@68: #define __Pyx_Arg_XDECREF_FASTCALL(arg) __Pyx_Arg_XDECREF_VARARGS(arg) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS jpayne@68: #define __Pyx_ArgsSlice_VARARGS(args, start, stop) __Pyx_PyTuple_FromArray(&__Pyx_Arg_VARARGS(args, start), stop - start) jpayne@68: #define __Pyx_ArgsSlice_FASTCALL(args, start, stop) __Pyx_PyTuple_FromArray(&__Pyx_Arg_FASTCALL(args, start), stop - start) jpayne@68: #else jpayne@68: #define __Pyx_ArgsSlice_VARARGS(args, start, stop) PyTuple_GetSlice(args, start, stop) jpayne@68: #define __Pyx_ArgsSlice_FASTCALL(args, start, stop) PyTuple_GetSlice(args, start, stop) jpayne@68: #endif jpayne@68: jpayne@68: /* RaiseDoubleKeywords.proto */ jpayne@68: static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); jpayne@68: jpayne@68: /* ParseKeywords.proto */ jpayne@68: static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject *const *kwvalues, jpayne@68: PyObject **argnames[], jpayne@68: PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, jpayne@68: const char* function_name); jpayne@68: jpayne@68: /* RaiseArgTupleInvalid.proto */ jpayne@68: static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, jpayne@68: Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); jpayne@68: jpayne@68: /* PySequenceContains.proto */ jpayne@68: static CYTHON_INLINE int __Pyx_PySequence_ContainsTF(PyObject* item, PyObject* seq, int eq) { jpayne@68: int result = PySequence_Contains(seq, item); jpayne@68: return unlikely(result < 0) ? result : (result == (eq == Py_EQ)); jpayne@68: } jpayne@68: jpayne@68: /* PyFunctionFastCall.proto */ jpayne@68: #if CYTHON_FAST_PYCALL jpayne@68: #if !CYTHON_VECTORCALL jpayne@68: #define __Pyx_PyFunction_FastCall(func, args, nargs)\ jpayne@68: __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL) jpayne@68: static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs); jpayne@68: #endif jpayne@68: #define __Pyx_BUILD_ASSERT_EXPR(cond)\ jpayne@68: (sizeof(char [1 - 2*!(cond)]) - 1) jpayne@68: #ifndef Py_MEMBER_SIZE jpayne@68: #define Py_MEMBER_SIZE(type, member) sizeof(((type *)0)->member) jpayne@68: #endif jpayne@68: #if !CYTHON_VECTORCALL jpayne@68: #if PY_VERSION_HEX >= 0x03080000 jpayne@68: #include "frameobject.h" jpayne@68: #if PY_VERSION_HEX >= 0x030b00a6 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #ifndef Py_BUILD_CORE jpayne@68: #define Py_BUILD_CORE 1 jpayne@68: #endif jpayne@68: #include "internal/pycore_frame.h" jpayne@68: #endif jpayne@68: #define __Pxy_PyFrame_Initialize_Offsets() jpayne@68: #define __Pyx_PyFrame_GetLocalsplus(frame) ((frame)->f_localsplus) jpayne@68: #else jpayne@68: static size_t __pyx_pyframe_localsplus_offset = 0; jpayne@68: #include "frameobject.h" jpayne@68: #define __Pxy_PyFrame_Initialize_Offsets()\ jpayne@68: ((void)__Pyx_BUILD_ASSERT_EXPR(sizeof(PyFrameObject) == offsetof(PyFrameObject, f_localsplus) + Py_MEMBER_SIZE(PyFrameObject, f_localsplus)),\ jpayne@68: (void)(__pyx_pyframe_localsplus_offset = ((size_t)PyFrame_Type.tp_basicsize) - Py_MEMBER_SIZE(PyFrameObject, f_localsplus))) jpayne@68: #define __Pyx_PyFrame_GetLocalsplus(frame)\ jpayne@68: (assert(__pyx_pyframe_localsplus_offset), (PyObject **)(((char *)(frame)) + __pyx_pyframe_localsplus_offset)) jpayne@68: #endif jpayne@68: #endif jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectCall.proto */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw); jpayne@68: #else jpayne@68: #define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw) jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectCallMethO.proto */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg); jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectFastCall.proto */ jpayne@68: #define __Pyx_PyObject_FastCall(func, args, nargs) __Pyx_PyObject_FastCallDict(func, args, (size_t)(nargs), NULL) jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_FastCallDict(PyObject *func, PyObject **args, size_t nargs, PyObject *kwargs); jpayne@68: jpayne@68: /* PyObjectCallOneArg.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg); jpayne@68: jpayne@68: /* RaiseException.proto */ jpayne@68: static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); jpayne@68: jpayne@68: /* WriteUnraisableException.proto */ jpayne@68: static void __Pyx_WriteUnraisable(const char *name, int clineno, jpayne@68: int lineno, const char *filename, jpayne@68: int full_traceback, int nogil); jpayne@68: jpayne@68: /* Import.proto */ jpayne@68: static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); jpayne@68: jpayne@68: /* ImportDottedModule.proto */ jpayne@68: static PyObject *__Pyx_ImportDottedModule(PyObject *name, PyObject *parts_tuple); jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: static PyObject *__Pyx_ImportDottedModule_WalkParts(PyObject *module, PyObject *name, PyObject *parts_tuple); jpayne@68: #endif jpayne@68: jpayne@68: /* PyDictVersioning.proto */ jpayne@68: #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS jpayne@68: #define __PYX_DICT_VERSION_INIT ((PY_UINT64_T) -1) jpayne@68: #define __PYX_GET_DICT_VERSION(dict) (((PyDictObject*)(dict))->ma_version_tag) jpayne@68: #define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)\ jpayne@68: (version_var) = __PYX_GET_DICT_VERSION(dict);\ jpayne@68: (cache_var) = (value); jpayne@68: #define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) {\ jpayne@68: static PY_UINT64_T __pyx_dict_version = 0;\ jpayne@68: static PyObject *__pyx_dict_cached_value = NULL;\ jpayne@68: if (likely(__PYX_GET_DICT_VERSION(DICT) == __pyx_dict_version)) {\ jpayne@68: (VAR) = __pyx_dict_cached_value;\ jpayne@68: } else {\ jpayne@68: (VAR) = __pyx_dict_cached_value = (LOOKUP);\ jpayne@68: __pyx_dict_version = __PYX_GET_DICT_VERSION(DICT);\ jpayne@68: }\ jpayne@68: } jpayne@68: static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj); jpayne@68: static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj); jpayne@68: static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version); jpayne@68: #else jpayne@68: #define __PYX_GET_DICT_VERSION(dict) (0) jpayne@68: #define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var) jpayne@68: #define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) (VAR) = (LOOKUP); jpayne@68: #endif jpayne@68: jpayne@68: /* GetModuleGlobalName.proto */ jpayne@68: #if CYTHON_USE_DICT_VERSIONS jpayne@68: #define __Pyx_GetModuleGlobalName(var, name) do {\ jpayne@68: static PY_UINT64_T __pyx_dict_version = 0;\ jpayne@68: static PyObject *__pyx_dict_cached_value = NULL;\ jpayne@68: (var) = (likely(__pyx_dict_version == __PYX_GET_DICT_VERSION(__pyx_d))) ?\ jpayne@68: (likely(__pyx_dict_cached_value) ? __Pyx_NewRef(__pyx_dict_cached_value) : __Pyx_GetBuiltinName(name)) :\ jpayne@68: __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\ jpayne@68: } while(0) jpayne@68: #define __Pyx_GetModuleGlobalNameUncached(var, name) do {\ jpayne@68: PY_UINT64_T __pyx_dict_version;\ jpayne@68: PyObject *__pyx_dict_cached_value;\ jpayne@68: (var) = __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\ jpayne@68: } while(0) jpayne@68: static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value); jpayne@68: #else jpayne@68: #define __Pyx_GetModuleGlobalName(var, name) (var) = __Pyx__GetModuleGlobalName(name) jpayne@68: #define __Pyx_GetModuleGlobalNameUncached(var, name) (var) = __Pyx__GetModuleGlobalName(name) jpayne@68: static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name); jpayne@68: #endif jpayne@68: jpayne@68: /* ListAppend.proto */ jpayne@68: #if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS jpayne@68: static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) { jpayne@68: PyListObject* L = (PyListObject*) list; jpayne@68: Py_ssize_t len = Py_SIZE(list); jpayne@68: if (likely(L->allocated > len) & likely(len > (L->allocated >> 1))) { jpayne@68: Py_INCREF(x); jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 jpayne@68: L->ob_item[len] = x; jpayne@68: #else jpayne@68: PyList_SET_ITEM(list, len, x); jpayne@68: #endif jpayne@68: __Pyx_SET_SIZE(list, len + 1); jpayne@68: return 0; jpayne@68: } jpayne@68: return PyList_Append(list, x); jpayne@68: } jpayne@68: #else jpayne@68: #define __Pyx_PyList_Append(L,x) PyList_Append(L,x) jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectCall2Args.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2); jpayne@68: jpayne@68: /* PyObjectGetMethod.proto */ jpayne@68: static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method); jpayne@68: jpayne@68: /* PyObjectCallMethod1.proto */ jpayne@68: static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg); jpayne@68: jpayne@68: /* StringJoin.proto */ jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: #define __Pyx_PyString_Join __Pyx_PyBytes_Join jpayne@68: #define __Pyx_PyBaseString_Join(s, v) (PyUnicode_CheckExact(s) ? PyUnicode_Join(s, v) : __Pyx_PyBytes_Join(s, v)) jpayne@68: #else jpayne@68: #define __Pyx_PyString_Join PyUnicode_Join jpayne@68: #define __Pyx_PyBaseString_Join PyUnicode_Join jpayne@68: #endif jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyBytes_Join(PyObject* sep, PyObject* values); jpayne@68: jpayne@68: /* KeywordStringCheck.proto */ jpayne@68: static int __Pyx_CheckKeywordStrings(PyObject *kw, const char* function_name, int kw_allowed); jpayne@68: jpayne@68: /* IncludeStructmemberH.proto */ jpayne@68: #include jpayne@68: jpayne@68: /* FixUpExtensionType.proto */ jpayne@68: #if CYTHON_USE_TYPE_SPECS jpayne@68: static int __Pyx_fix_up_extension_type_from_spec(PyType_Spec *spec, PyTypeObject *type); jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectCallNoArg.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func); jpayne@68: jpayne@68: /* PyObjectCallMethod0.proto */ jpayne@68: static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name); jpayne@68: jpayne@68: /* ValidateBasesTuple.proto */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON || CYTHON_COMPILING_IN_LIMITED_API || CYTHON_USE_TYPE_SPECS jpayne@68: static int __Pyx_validate_bases_tuple(const char *type_name, Py_ssize_t dictoffset, PyObject *bases); jpayne@68: #endif jpayne@68: jpayne@68: /* PyType_Ready.proto */ jpayne@68: CYTHON_UNUSED static int __Pyx_PyType_Ready(PyTypeObject *t); jpayne@68: jpayne@68: /* PyObject_GenericGetAttrNoDict.proto */ jpayne@68: #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name); jpayne@68: #else jpayne@68: #define __Pyx_PyObject_GenericGetAttrNoDict PyObject_GenericGetAttr jpayne@68: #endif jpayne@68: jpayne@68: /* PyObject_GenericGetAttr.proto */ jpayne@68: #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 jpayne@68: static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name); jpayne@68: #else jpayne@68: #define __Pyx_PyObject_GenericGetAttr PyObject_GenericGetAttr jpayne@68: #endif jpayne@68: jpayne@68: /* SetupReduce.proto */ jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static int __Pyx_setup_reduce(PyObject* type_obj); jpayne@68: #endif jpayne@68: jpayne@68: /* TypeImport.proto */ jpayne@68: #ifndef __PYX_HAVE_RT_ImportType_proto_3_0_11 jpayne@68: #define __PYX_HAVE_RT_ImportType_proto_3_0_11 jpayne@68: #if defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L jpayne@68: #include jpayne@68: #endif jpayne@68: #if (defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L) || __cplusplus >= 201103L jpayne@68: #define __PYX_GET_STRUCT_ALIGNMENT_3_0_11(s) alignof(s) jpayne@68: #else jpayne@68: #define __PYX_GET_STRUCT_ALIGNMENT_3_0_11(s) sizeof(void*) jpayne@68: #endif jpayne@68: enum __Pyx_ImportType_CheckSize_3_0_11 { jpayne@68: __Pyx_ImportType_CheckSize_Error_3_0_11 = 0, jpayne@68: __Pyx_ImportType_CheckSize_Warn_3_0_11 = 1, jpayne@68: __Pyx_ImportType_CheckSize_Ignore_3_0_11 = 2 jpayne@68: }; jpayne@68: static PyTypeObject *__Pyx_ImportType_3_0_11(PyObject* module, const char *module_name, const char *class_name, size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_0_11 check_size); jpayne@68: #endif jpayne@68: jpayne@68: /* GetVTable.proto */ jpayne@68: static void* __Pyx_GetVtable(PyTypeObject *type); jpayne@68: jpayne@68: /* FetchSharedCythonModule.proto */ jpayne@68: static PyObject *__Pyx_FetchSharedCythonABIModule(void); jpayne@68: jpayne@68: /* FetchCommonType.proto */ jpayne@68: #if !CYTHON_USE_TYPE_SPECS jpayne@68: static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type); jpayne@68: #else jpayne@68: static PyTypeObject* __Pyx_FetchCommonTypeFromSpec(PyObject *module, PyType_Spec *spec, PyObject *bases); jpayne@68: #endif jpayne@68: jpayne@68: /* PyMethodNew.proto */ jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static PyObject *__Pyx_PyMethod_New(PyObject *func, PyObject *self, PyObject *typ) { jpayne@68: PyObject *typesModule=NULL, *methodType=NULL, *result=NULL; jpayne@68: CYTHON_UNUSED_VAR(typ); jpayne@68: if (!self) jpayne@68: return __Pyx_NewRef(func); jpayne@68: typesModule = PyImport_ImportModule("types"); jpayne@68: if (!typesModule) return NULL; jpayne@68: methodType = PyObject_GetAttrString(typesModule, "MethodType"); jpayne@68: Py_DECREF(typesModule); jpayne@68: if (!methodType) return NULL; jpayne@68: result = PyObject_CallFunctionObjArgs(methodType, func, self, NULL); jpayne@68: Py_DECREF(methodType); jpayne@68: return result; jpayne@68: } jpayne@68: #elif PY_MAJOR_VERSION >= 3 jpayne@68: static PyObject *__Pyx_PyMethod_New(PyObject *func, PyObject *self, PyObject *typ) { jpayne@68: CYTHON_UNUSED_VAR(typ); jpayne@68: if (!self) jpayne@68: return __Pyx_NewRef(func); jpayne@68: return PyMethod_New(func, self); jpayne@68: } jpayne@68: #else jpayne@68: #define __Pyx_PyMethod_New PyMethod_New jpayne@68: #endif jpayne@68: jpayne@68: /* PyVectorcallFastCallDict.proto */ jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: static CYTHON_INLINE PyObject *__Pyx_PyVectorcall_FastCallDict(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw); jpayne@68: #endif jpayne@68: jpayne@68: /* CythonFunctionShared.proto */ jpayne@68: #define __Pyx_CyFunction_USED jpayne@68: #define __Pyx_CYFUNCTION_STATICMETHOD 0x01 jpayne@68: #define __Pyx_CYFUNCTION_CLASSMETHOD 0x02 jpayne@68: #define __Pyx_CYFUNCTION_CCLASS 0x04 jpayne@68: #define __Pyx_CYFUNCTION_COROUTINE 0x08 jpayne@68: #define __Pyx_CyFunction_GetClosure(f)\ jpayne@68: (((__pyx_CyFunctionObject *) (f))->func_closure) jpayne@68: #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #define __Pyx_CyFunction_GetClassObj(f)\ jpayne@68: (((__pyx_CyFunctionObject *) (f))->func_classobj) jpayne@68: #else jpayne@68: #define __Pyx_CyFunction_GetClassObj(f)\ jpayne@68: ((PyObject*) ((PyCMethodObject *) (f))->mm_class) jpayne@68: #endif jpayne@68: #define __Pyx_CyFunction_SetClassObj(f, classobj)\ jpayne@68: __Pyx__CyFunction_SetClassObj((__pyx_CyFunctionObject *) (f), (classobj)) jpayne@68: #define __Pyx_CyFunction_Defaults(type, f)\ jpayne@68: ((type *)(((__pyx_CyFunctionObject *) (f))->defaults)) jpayne@68: #define __Pyx_CyFunction_SetDefaultsGetter(f, g)\ jpayne@68: ((__pyx_CyFunctionObject *) (f))->defaults_getter = (g) jpayne@68: typedef struct { jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: PyObject_HEAD jpayne@68: PyObject *func; jpayne@68: #elif PY_VERSION_HEX < 0x030900B1 jpayne@68: PyCFunctionObject func; jpayne@68: #else jpayne@68: PyCMethodObject func; jpayne@68: #endif jpayne@68: #if CYTHON_BACKPORT_VECTORCALL jpayne@68: __pyx_vectorcallfunc func_vectorcall; jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x030500A0 || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: PyObject *func_weakreflist; jpayne@68: #endif jpayne@68: PyObject *func_dict; jpayne@68: PyObject *func_name; jpayne@68: PyObject *func_qualname; jpayne@68: PyObject *func_doc; jpayne@68: PyObject *func_globals; jpayne@68: PyObject *func_code; jpayne@68: PyObject *func_closure; jpayne@68: #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: PyObject *func_classobj; jpayne@68: #endif jpayne@68: void *defaults; jpayne@68: int defaults_pyobjects; jpayne@68: size_t defaults_size; jpayne@68: int flags; jpayne@68: PyObject *defaults_tuple; jpayne@68: PyObject *defaults_kwdict; jpayne@68: PyObject *(*defaults_getter)(PyObject *); jpayne@68: PyObject *func_annotations; jpayne@68: PyObject *func_is_coroutine; jpayne@68: } __pyx_CyFunctionObject; jpayne@68: #undef __Pyx_CyOrPyCFunction_Check jpayne@68: #define __Pyx_CyFunction_Check(obj) __Pyx_TypeCheck(obj, __pyx_CyFunctionType) jpayne@68: #define __Pyx_CyOrPyCFunction_Check(obj) __Pyx_TypeCheck2(obj, __pyx_CyFunctionType, &PyCFunction_Type) jpayne@68: #define __Pyx_CyFunction_CheckExact(obj) __Pyx_IS_TYPE(obj, __pyx_CyFunctionType) jpayne@68: static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc); jpayne@68: #undef __Pyx_IsSameCFunction jpayne@68: #define __Pyx_IsSameCFunction(func, cfunc) __Pyx__IsSameCyOrCFunction(func, cfunc) jpayne@68: static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject* op, PyMethodDef *ml, jpayne@68: int flags, PyObject* qualname, jpayne@68: PyObject *closure, jpayne@68: PyObject *module, PyObject *globals, jpayne@68: PyObject* code); jpayne@68: static CYTHON_INLINE void __Pyx__CyFunction_SetClassObj(__pyx_CyFunctionObject* f, PyObject* classobj); jpayne@68: static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *m, jpayne@68: size_t size, jpayne@68: int pyobjects); jpayne@68: static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *m, jpayne@68: PyObject *tuple); jpayne@68: static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *m, jpayne@68: PyObject *dict); jpayne@68: static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *m, jpayne@68: PyObject *dict); jpayne@68: static int __pyx_CyFunction_init(PyObject *module); jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: static PyObject * __Pyx_CyFunction_Vectorcall_NOARGS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); jpayne@68: static PyObject * __Pyx_CyFunction_Vectorcall_O(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); jpayne@68: static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); jpayne@68: static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); jpayne@68: #if CYTHON_BACKPORT_VECTORCALL jpayne@68: #define __Pyx_CyFunction_func_vectorcall(f) (((__pyx_CyFunctionObject*)f)->func_vectorcall) jpayne@68: #else jpayne@68: #define __Pyx_CyFunction_func_vectorcall(f) (((PyCFunctionObject*)f)->vectorcall) jpayne@68: #endif jpayne@68: #endif jpayne@68: jpayne@68: /* CythonFunction.proto */ jpayne@68: static PyObject *__Pyx_CyFunction_New(PyMethodDef *ml, jpayne@68: int flags, PyObject* qualname, jpayne@68: PyObject *closure, jpayne@68: PyObject *module, PyObject *globals, jpayne@68: PyObject* code); jpayne@68: jpayne@68: /* CLineInTraceback.proto */ jpayne@68: #ifdef CYTHON_CLINE_IN_TRACEBACK jpayne@68: #define __Pyx_CLineForTraceback(tstate, c_line) (((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0) jpayne@68: #else jpayne@68: static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line); jpayne@68: #endif jpayne@68: jpayne@68: /* CodeObjectCache.proto */ jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: typedef struct { jpayne@68: PyCodeObject* code_object; jpayne@68: int code_line; jpayne@68: } __Pyx_CodeObjectCacheEntry; jpayne@68: struct __Pyx_CodeObjectCache { jpayne@68: int count; jpayne@68: int max_count; jpayne@68: __Pyx_CodeObjectCacheEntry* entries; jpayne@68: }; jpayne@68: static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL}; jpayne@68: static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line); jpayne@68: static PyCodeObject *__pyx_find_code_object(int code_line); jpayne@68: static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); jpayne@68: #endif jpayne@68: jpayne@68: /* AddTraceback.proto */ jpayne@68: static void __Pyx_AddTraceback(const char *funcname, int c_line, jpayne@68: int py_line, const char *filename); jpayne@68: jpayne@68: /* GCCDiagnostics.proto */ jpayne@68: #if !defined(__INTEL_COMPILER) && defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 6)) jpayne@68: #define __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #endif jpayne@68: jpayne@68: /* ArrayAPI.proto */ jpayne@68: #ifndef _ARRAYARRAY_H jpayne@68: #define _ARRAYARRAY_H jpayne@68: typedef struct arraydescr { jpayne@68: int typecode; jpayne@68: int itemsize; jpayne@68: PyObject * (*getitem)(struct arrayobject *, Py_ssize_t); jpayne@68: int (*setitem)(struct arrayobject *, Py_ssize_t, PyObject *); jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: char *formats; jpayne@68: #endif jpayne@68: } arraydescr; jpayne@68: struct arrayobject { jpayne@68: PyObject_HEAD jpayne@68: Py_ssize_t ob_size; jpayne@68: union { jpayne@68: char *ob_item; jpayne@68: float *as_floats; jpayne@68: double *as_doubles; jpayne@68: int *as_ints; jpayne@68: unsigned int *as_uints; jpayne@68: unsigned char *as_uchars; jpayne@68: signed char *as_schars; jpayne@68: char *as_chars; jpayne@68: unsigned long *as_ulongs; jpayne@68: long *as_longs; jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: unsigned long long *as_ulonglongs; jpayne@68: long long *as_longlongs; jpayne@68: #endif jpayne@68: short *as_shorts; jpayne@68: unsigned short *as_ushorts; jpayne@68: Py_UNICODE *as_pyunicodes; jpayne@68: void *as_voidptr; jpayne@68: } data; jpayne@68: Py_ssize_t allocated; jpayne@68: struct arraydescr *ob_descr; jpayne@68: PyObject *weakreflist; jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: int ob_exports; jpayne@68: #endif jpayne@68: }; jpayne@68: #ifndef NO_NEWARRAY_INLINE jpayne@68: static CYTHON_INLINE PyObject * newarrayobject(PyTypeObject *type, Py_ssize_t size, jpayne@68: struct arraydescr *descr) { jpayne@68: arrayobject *op; jpayne@68: size_t nbytes; jpayne@68: if (size < 0) { jpayne@68: PyErr_BadInternalCall(); jpayne@68: return NULL; jpayne@68: } jpayne@68: nbytes = size * descr->itemsize; jpayne@68: if (nbytes / descr->itemsize != (size_t)size) { jpayne@68: return PyErr_NoMemory(); jpayne@68: } jpayne@68: op = (arrayobject *) type->tp_alloc(type, 0); jpayne@68: if (op == NULL) { jpayne@68: return NULL; jpayne@68: } jpayne@68: op->ob_descr = descr; jpayne@68: op->allocated = size; jpayne@68: op->weakreflist = NULL; jpayne@68: __Pyx_SET_SIZE(op, size); jpayne@68: if (size <= 0) { jpayne@68: op->data.ob_item = NULL; jpayne@68: } jpayne@68: else { jpayne@68: op->data.ob_item = PyMem_NEW(char, nbytes); jpayne@68: if (op->data.ob_item == NULL) { jpayne@68: Py_DECREF(op); jpayne@68: return PyErr_NoMemory(); jpayne@68: } jpayne@68: } jpayne@68: return (PyObject *) op; jpayne@68: } jpayne@68: #else jpayne@68: PyObject* newarrayobject(PyTypeObject *type, Py_ssize_t size, jpayne@68: struct arraydescr *descr); jpayne@68: #endif jpayne@68: static CYTHON_INLINE int resize(arrayobject *self, Py_ssize_t n) { jpayne@68: void *items = (void*) self->data.ob_item; jpayne@68: PyMem_Resize(items, char, (size_t)(n * self->ob_descr->itemsize)); jpayne@68: if (items == NULL) { jpayne@68: PyErr_NoMemory(); jpayne@68: return -1; jpayne@68: } jpayne@68: self->data.ob_item = (char*) items; jpayne@68: __Pyx_SET_SIZE(self, n); jpayne@68: self->allocated = n; jpayne@68: return 0; jpayne@68: } jpayne@68: static CYTHON_INLINE int resize_smart(arrayobject *self, Py_ssize_t n) { jpayne@68: void *items = (void*) self->data.ob_item; jpayne@68: Py_ssize_t newsize; jpayne@68: if (n < self->allocated && n*4 > self->allocated) { jpayne@68: __Pyx_SET_SIZE(self, n); jpayne@68: return 0; jpayne@68: } jpayne@68: newsize = n + (n / 2) + 1; jpayne@68: if (newsize <= n) { jpayne@68: PyErr_NoMemory(); jpayne@68: return -1; jpayne@68: } jpayne@68: PyMem_Resize(items, char, (size_t)(newsize * self->ob_descr->itemsize)); jpayne@68: if (items == NULL) { jpayne@68: PyErr_NoMemory(); jpayne@68: return -1; jpayne@68: } jpayne@68: self->data.ob_item = (char*) items; jpayne@68: __Pyx_SET_SIZE(self, n); jpayne@68: self->allocated = newsize; jpayne@68: return 0; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* CIntToPy.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_int(unsigned int value); jpayne@68: jpayne@68: /* CIntFromPy.proto */ jpayne@68: static CYTHON_INLINE size_t __Pyx_PyInt_As_size_t(PyObject *); jpayne@68: jpayne@68: /* CIntToPy.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); jpayne@68: jpayne@68: /* CIntToPy.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int64_t(int64_t value); jpayne@68: jpayne@68: /* CIntFromPy.proto */ jpayne@68: static CYTHON_INLINE int64_t __Pyx_PyInt_As_int64_t(PyObject *); jpayne@68: jpayne@68: /* CIntFromPy.proto */ jpayne@68: static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); jpayne@68: jpayne@68: /* FormatTypeName.proto */ jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: typedef PyObject *__Pyx_TypeName; jpayne@68: #define __Pyx_FMT_TYPENAME "%U" jpayne@68: static __Pyx_TypeName __Pyx_PyType_GetName(PyTypeObject* tp); jpayne@68: #define __Pyx_DECREF_TypeName(obj) Py_XDECREF(obj) jpayne@68: #else jpayne@68: typedef const char *__Pyx_TypeName; jpayne@68: #define __Pyx_FMT_TYPENAME "%.200s" jpayne@68: #define __Pyx_PyType_GetName(tp) ((tp)->tp_name) jpayne@68: #define __Pyx_DECREF_TypeName(obj) jpayne@68: #endif jpayne@68: jpayne@68: /* CIntToPy.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); jpayne@68: jpayne@68: /* CIntFromPy.proto */ jpayne@68: static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); jpayne@68: jpayne@68: /* FastTypeChecks.proto */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: #define __Pyx_TypeCheck(obj, type) __Pyx_IsSubtype(Py_TYPE(obj), (PyTypeObject *)type) jpayne@68: #define __Pyx_TypeCheck2(obj, type1, type2) __Pyx_IsAnySubtype2(Py_TYPE(obj), (PyTypeObject *)type1, (PyTypeObject *)type2) jpayne@68: static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b); jpayne@68: static CYTHON_INLINE int __Pyx_IsAnySubtype2(PyTypeObject *cls, PyTypeObject *a, PyTypeObject *b); jpayne@68: static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject *type); jpayne@68: static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *type1, PyObject *type2); jpayne@68: #else jpayne@68: #define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) jpayne@68: #define __Pyx_TypeCheck2(obj, type1, type2) (PyObject_TypeCheck(obj, (PyTypeObject *)type1) || PyObject_TypeCheck(obj, (PyTypeObject *)type2)) jpayne@68: #define __Pyx_PyErr_GivenExceptionMatches(err, type) PyErr_GivenExceptionMatches(err, type) jpayne@68: #define __Pyx_PyErr_GivenExceptionMatches2(err, type1, type2) (PyErr_GivenExceptionMatches(err, type1) || PyErr_GivenExceptionMatches(err, type2)) jpayne@68: #endif jpayne@68: #define __Pyx_PyErr_ExceptionMatches2(err1, err2) __Pyx_PyErr_GivenExceptionMatches2(__Pyx_PyErr_CurrentExceptionType(), err1, err2) jpayne@68: #define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception) jpayne@68: jpayne@68: /* CheckBinaryVersion.proto */ jpayne@68: static unsigned long __Pyx_get_runtime_version(void); jpayne@68: static int __Pyx_check_binary_version(unsigned long ct_version, unsigned long rt_version, int allow_newer); jpayne@68: jpayne@68: /* FunctionImport.proto */ jpayne@68: static int __Pyx_ImportFunction_3_0_11(PyObject *module, const char *funcname, void (**f)(void), const char *sig); jpayne@68: jpayne@68: /* InitStrings.proto */ jpayne@68: static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); jpayne@68: jpayne@68: /* #### Code section: module_declarations ### */ jpayne@68: static CYTHON_INLINE double __pyx_f_7cpython_7complex_7complex_4real_real(PyComplexObject *__pyx_v_self); /* proto*/ jpayne@68: static CYTHON_INLINE double __pyx_f_7cpython_7complex_7complex_4imag_imag(PyComplexObject *__pyx_v_self); /* proto*/ jpayne@68: jpayne@68: /* Module declarations from "libc.stdint" */ jpayne@68: jpayne@68: /* Module declarations from "libc.string" */ jpayne@68: jpayne@68: /* Module declarations from "libc.stdlib" */ jpayne@68: jpayne@68: /* Module declarations from "libc.stdio" */ jpayne@68: jpayne@68: /* Module declarations from "posix.types" */ jpayne@68: jpayne@68: /* Module declarations from "pysam.libchtslib" */ jpayne@68: jpayne@68: /* Module declarations from "__builtin__" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.type" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.version" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.ref" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.exc" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.module" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.mem" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.tuple" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.list" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.sequence" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.mapping" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.iterator" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.number" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.int" */ jpayne@68: jpayne@68: /* Module declarations from "__builtin__" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.bool" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.long" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.float" */ jpayne@68: jpayne@68: /* Module declarations from "__builtin__" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.complex" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.string" */ jpayne@68: jpayne@68: /* Module declarations from "libc.stddef" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.unicode" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.pyport" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.dict" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.instance" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.function" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.method" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.weakref" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.getargs" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.pythread" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.pystate" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.cobject" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.oldbuffer" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.set" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.buffer" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.bytes" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.pycapsule" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.contextvars" */ jpayne@68: jpayne@68: /* Module declarations from "cpython" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.object" */ jpayne@68: jpayne@68: /* Module declarations from "cython" */ jpayne@68: jpayne@68: /* Module declarations from "array" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.array" */ jpayne@68: static CYTHON_INLINE int __pyx_f_7cpython_5array_extend_buffer(arrayobject *, char *, Py_ssize_t); /*proto*/ jpayne@68: jpayne@68: /* Module declarations from "pysam.libcutils" */ jpayne@68: static PyObject *(*__pyx_f_5pysam_9libcutils_force_bytes)(PyObject *, struct __pyx_opt_args_5pysam_9libcutils_force_bytes *__pyx_optional_args); /*proto*/ jpayne@68: static PyObject *(*__pyx_f_5pysam_9libcutils_encode_filename)(PyObject *); /*proto*/ jpayne@68: jpayne@68: /* Module declarations from "pysam.libcbgzf" */ jpayne@68: /* #### Code section: typeinfo ### */ jpayne@68: /* #### Code section: before_global_var ### */ jpayne@68: #define __Pyx_MODULE_NAME "pysam.libcbgzf" jpayne@68: extern int __pyx_module_is_main_pysam__libcbgzf; jpayne@68: int __pyx_module_is_main_pysam__libcbgzf = 0; jpayne@68: jpayne@68: /* Implementation of "pysam.libcbgzf" */ jpayne@68: /* #### Code section: global_var ### */ jpayne@68: static PyObject *__pyx_builtin_ValueError; jpayne@68: static PyObject *__pyx_builtin_IOError; jpayne@68: static PyObject *__pyx_builtin_AttributeError; jpayne@68: static PyObject *__pyx_builtin_StopIteration; jpayne@68: static PyObject *__pyx_builtin_TypeError; jpayne@68: static PyObject *__pyx_builtin_MemoryError; jpayne@68: /* #### Code section: string_decls ### */ jpayne@68: static const char __pyx_k_U[] = "U"; jpayne@68: static const char __pyx_k_b[] = "b"; jpayne@68: static const char __pyx_k_c[] = "c"; jpayne@68: static const char __pyx_k_s[] = "s"; jpayne@68: static const char __pyx_k_t[] = "t"; jpayne@68: static const char __pyx_k__3[] = "*"; jpayne@68: static const char __pyx_k__7[] = ""; jpayne@68: static const char __pyx_k_gc[] = "gc"; jpayne@68: static const char __pyx_k_io[] = "io"; jpayne@68: static const char __pyx_k_rb[] = "rb"; jpayne@68: static const char __pyx_k_tb[] = "tb"; jpayne@68: static const char __pyx_k__48[] = "?"; jpayne@68: static const char __pyx_k_all[] = "__all__"; jpayne@68: static const char __pyx_k_off[] = "off"; jpayne@68: static const char __pyx_k_ret[] = "ret"; jpayne@68: static const char __pyx_k_data[] = "data"; jpayne@68: static const char __pyx_k_exit[] = "__exit__"; jpayne@68: static const char __pyx_k_join[] = "join"; jpayne@68: static const char __pyx_k_line[] = "line"; jpayne@68: static const char __pyx_k_main[] = "__main__"; jpayne@68: static const char __pyx_k_mode[] = "mode"; jpayne@68: static const char __pyx_k_name[] = "__name__"; jpayne@68: static const char __pyx_k_read[] = "read"; jpayne@68: static const char __pyx_k_seek[] = "seek"; jpayne@68: static const char __pyx_k_self[] = "self"; jpayne@68: static const char __pyx_k_size[] = "size"; jpayne@68: static const char __pyx_k_spec[] = "__spec__"; jpayne@68: static const char __pyx_k_tell[] = "tell"; jpayne@68: static const char __pyx_k_test[] = "__test__"; jpayne@68: static const char __pyx_k_type[] = "type"; jpayne@68: static const char __pyx_k_EBADF[] = "EBADF"; jpayne@68: static const char __pyx_k_cdata[] = "cdata"; jpayne@68: static const char __pyx_k_chunk[] = "chunk"; jpayne@68: static const char __pyx_k_close[] = "close"; jpayne@68: static const char __pyx_k_enter[] = "__enter__"; jpayne@68: static const char __pyx_k_errno[] = "errno"; jpayne@68: static const char __pyx_k_flush[] = "flush"; jpayne@68: static const char __pyx_k_index[] = "index"; jpayne@68: static const char __pyx_k_value[] = "value"; jpayne@68: static const char __pyx_k_write[] = "write"; jpayne@68: static const char __pyx_k_chunks[] = "chunks"; jpayne@68: static const char __pyx_k_enable[] = "enable"; jpayne@68: static const char __pyx_k_fileno[] = "fileno"; jpayne@68: static const char __pyx_k_format[] = "format"; jpayne@68: static const char __pyx_k_import[] = "__import__"; jpayne@68: static const char __pyx_k_length[] = "length"; jpayne@68: static const char __pyx_k_nbytes[] = "nbytes"; jpayne@68: static const char __pyx_k_offset[] = "offset"; jpayne@68: static const char __pyx_k_reduce[] = "__reduce__"; jpayne@68: static const char __pyx_k_rewind[] = "rewind"; jpayne@68: static const char __pyx_k_whence[] = "whence"; jpayne@68: static const char __pyx_k_BGZFile[] = "BGZFile"; jpayne@68: static const char __pyx_k_IOError[] = "IOError"; jpayne@68: static const char __pyx_k_disable[] = "disable"; jpayne@68: static const char __pyx_k_SEEK_SET[] = "SEEK_SET"; jpayne@68: static const char __pyx_k_filename[] = "filename"; jpayne@68: static const char __pyx_k_getstate[] = "__getstate__"; jpayne@68: static const char __pyx_k_readable[] = "readable"; jpayne@68: static const char __pyx_k_readline[] = "readline"; jpayne@68: static const char __pyx_k_seekable[] = "seekable"; jpayne@68: static const char __pyx_k_setstate[] = "__setstate__"; jpayne@68: static const char __pyx_k_writable[] = "writable"; jpayne@68: static const char __pyx_k_TypeError[] = "TypeError"; jpayne@68: static const char __pyx_k_isenabled[] = "isenabled"; jpayne@68: static const char __pyx_k_pyx_state[] = "__pyx_state"; jpayne@68: static const char __pyx_k_read_size[] = "read_size"; jpayne@68: static const char __pyx_k_reduce_ex[] = "__reduce_ex__"; jpayne@68: static const char __pyx_k_ValueError[] = "ValueError"; jpayne@68: static const char __pyx_k_pyx_vtable[] = "__pyx_vtable__"; jpayne@68: static const char __pyx_k_BUFFER_SIZE[] = "BUFFER_SIZE"; jpayne@68: static const char __pyx_k_MemoryError[] = "MemoryError"; jpayne@68: static const char __pyx_k_BGZFile_read[] = "BGZFile.read"; jpayne@68: static const char __pyx_k_BGZFile_seek[] = "BGZFile.seek"; jpayne@68: static const char __pyx_k_BGZFile_tell[] = "BGZFile.tell"; jpayne@68: static const char __pyx_k_initializing[] = "_initializing"; jpayne@68: static const char __pyx_k_is_coroutine[] = "_is_coroutine"; jpayne@68: static const char __pyx_k_stringsource[] = ""; jpayne@68: static const char __pyx_k_BGZFile_close[] = "BGZFile.close"; jpayne@68: static const char __pyx_k_BGZFile_flush[] = "BGZFile.flush"; jpayne@68: static const char __pyx_k_BGZFile_write[] = "BGZFile.write"; jpayne@68: static const char __pyx_k_StopIteration[] = "StopIteration"; jpayne@68: static const char __pyx_k_reduce_cython[] = "__reduce_cython__"; jpayne@68: static const char __pyx_k_AttributeError[] = "AttributeError"; jpayne@68: static const char __pyx_k_BGZFile___exit[] = "BGZFile.__exit__"; jpayne@68: static const char __pyx_k_BGZFile_fileno[] = "BGZFile.fileno"; jpayne@68: static const char __pyx_k_BGZFile_rewind[] = "BGZFile.rewind"; jpayne@68: static const char __pyx_k_Invalid_mode_r[] = "Invalid mode: {!r}"; jpayne@68: static const char __pyx_k_pysam_libcbgzf[] = "pysam.libcbgzf"; jpayne@68: static const char __pyx_k_BGZFile___enter[] = "BGZFile.__enter__"; jpayne@68: static const char __pyx_k_setstate_cython[] = "__setstate_cython__"; jpayne@68: static const char __pyx_k_BGZFile_readable[] = "BGZFile.readable"; jpayne@68: static const char __pyx_k_BGZFile_readline[] = "BGZFile.readline"; jpayne@68: static const char __pyx_k_BGZFile_seekable[] = "BGZFile.seekable"; jpayne@68: static const char __pyx_k_BGZFile_writable[] = "BGZFile.writable"; jpayne@68: static const char __pyx_k_Cannot_write_index[] = "Cannot write index"; jpayne@68: static const char __pyx_k_asyncio_coroutines[] = "asyncio.coroutines"; jpayne@68: static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback"; jpayne@68: static const char __pyx_k_pysam_libcbgzf_pyx[] = "pysam/libcbgzf.pyx"; jpayne@68: static const char __pyx_k_DEFAULT_BUFFER_SIZE[] = "DEFAULT_BUFFER_SIZE"; jpayne@68: static const char __pyx_k_BGZFile_write_failed[] = "BGZFile write failed"; jpayne@68: static const char __pyx_k_BGZFile___reduce_cython[] = "BGZFile.__reduce_cython__"; jpayne@68: static const char __pyx_k_BGZFile___setstate_cython[] = "BGZFile.__setstate_cython__"; jpayne@68: static const char __pyx_k_Error_building_bgzf_index[] = "Error building bgzf index"; jpayne@68: static const char __pyx_k_Can_t_rewind_in_write_mode[] = "Can't rewind in write mode"; jpayne@68: static const char __pyx_k_Error_reading_from_BGZFile[] = "Error reading from BGZFile"; jpayne@68: static const char __pyx_k_Seek_from_end_not_supported[] = "Seek from end not supported"; jpayne@68: static const char __pyx_k_Error_closing_BGZFile_object[] = "Error closing BGZFile object"; jpayne@68: static const char __pyx_k_Error_flushing_BGZFile_object[] = "Error flushing BGZFile object"; jpayne@68: static const char __pyx_k_Error_seeking_BGZFFile_object[] = "Error seeking BGZFFile object"; jpayne@68: static const char __pyx_k_read_on_closed_BGZFile_object[] = "read() on closed BGZFile object"; jpayne@68: static const char __pyx_k_seek_on_closed_BGZFile_object[] = "seek() on closed BGZFile object"; jpayne@68: static const char __pyx_k_write_on_closed_BGZFile_object[] = "write() on closed BGZFile object"; jpayne@68: static const char __pyx_k_rewind_on_closed_BGZFile_object[] = "rewind() on closed BGZFile object"; jpayne@68: static const char __pyx_k_Error_in_tell_on_BGZFFile_object[] = "Error in tell on BGZFFile object"; jpayne@68: static const char __pyx_k_Error_reading_line_in_BGZFFile_o[] = "Error reading line in BGZFFile object"; jpayne@68: static const char __pyx_k_Functions_that_read_and_write_bl[] = "Functions that read and write block gzipped files.\n\nThe user of the file doesn't have to worry about the compression\nand random access is allowed if an index file is present."; jpayne@68: static const char __pyx_k_read_on_write_only_BGZFile_objec[] = "read() on write-only BGZFile object"; jpayne@68: static const char __pyx_k_readable_on_closed_BGZFile_objec[] = "readable() on closed BGZFile object"; jpayne@68: static const char __pyx_k_readline_on_closed_BGZFile_objec[] = "readline() on closed BGZFile object"; jpayne@68: static const char __pyx_k_self_bgzf_cannot_be_converted_to[] = "self.bgzf cannot be converted to a Python object for pickling"; jpayne@68: static const char __pyx_k_write_on_read_only_BGZFile_objec[] = "write() on read-only BGZFile object"; jpayne@68: /* #### Code section: decls ### */ jpayne@68: static int __pyx_pf_7cpython_5array_5array___getbuffer__(arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info, CYTHON_UNUSED int __pyx_v_flags); /* proto */ jpayne@68: static void __pyx_pf_7cpython_5array_5array_2__releasebuffer__(CYTHON_UNUSED arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ jpayne@68: static int __pyx_pf_5pysam_8libcbgzf_7BGZFile___init__(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self, PyObject *__pyx_v_filename, PyObject *__pyx_v_mode, PyObject *__pyx_v_index); /* proto */ jpayne@68: static void __pyx_pf_5pysam_8libcbgzf_7BGZFile_2__dealloc__(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_4write(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self, PyObject *__pyx_v_data); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_6read(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self, PyObject *__pyx_v_size); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_6closed___get__(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_8close(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_10__enter__(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_12__exit__(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_type, CYTHON_UNUSED PyObject *__pyx_v_value, CYTHON_UNUSED PyObject *__pyx_v_tb); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_14flush(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_16fileno(CYTHON_UNUSED struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_18rewind(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_20readable(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_22writable(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_24seekable(CYTHON_UNUSED struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_26tell(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_28seek(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self, PyObject *__pyx_v_offset, PyObject *__pyx_v_whence); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_30readline(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_size); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_32__iter__(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_34__next__(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_4name___get__(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_5index___get__(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_36__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_38__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */ jpayne@68: static PyObject *__pyx_tp_new_5pysam_8libcbgzf_BGZFile(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ jpayne@68: /* #### Code section: late_includes ### */ jpayne@68: /* #### Code section: module_state ### */ jpayne@68: typedef struct { jpayne@68: PyObject *__pyx_d; jpayne@68: PyObject *__pyx_b; jpayne@68: PyObject *__pyx_cython_runtime; jpayne@68: PyObject *__pyx_empty_tuple; jpayne@68: PyObject *__pyx_empty_bytes; jpayne@68: PyObject *__pyx_empty_unicode; jpayne@68: #ifdef __Pyx_CyFunction_USED jpayne@68: PyTypeObject *__pyx_CyFunctionType; jpayne@68: #endif jpayne@68: #ifdef __Pyx_FusedFunction_USED jpayne@68: PyTypeObject *__pyx_FusedFunctionType; jpayne@68: #endif jpayne@68: #ifdef __Pyx_Generator_USED jpayne@68: PyTypeObject *__pyx_GeneratorType; jpayne@68: #endif jpayne@68: #ifdef __Pyx_IterableCoroutine_USED jpayne@68: PyTypeObject *__pyx_IterableCoroutineType; jpayne@68: #endif jpayne@68: #ifdef __Pyx_Coroutine_USED jpayne@68: PyTypeObject *__pyx_CoroutineAwaitType; jpayne@68: #endif jpayne@68: #ifdef __Pyx_Coroutine_USED jpayne@68: PyTypeObject *__pyx_CoroutineType; jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: PyTypeObject *__pyx_ptype_5pysam_10libchtslib_HTSFile; jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: PyTypeObject *__pyx_ptype_7cpython_4type_type; jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: PyTypeObject *__pyx_ptype_7cpython_4bool_bool; jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: PyTypeObject *__pyx_ptype_7cpython_7complex_complex; jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: PyTypeObject *__pyx_ptype_7cpython_5array_array; jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: PyObject *__pyx_type_5pysam_8libcbgzf_BGZFile; jpayne@68: #endif jpayne@68: PyTypeObject *__pyx_ptype_5pysam_8libcbgzf_BGZFile; jpayne@68: PyObject *__pyx_n_s_AttributeError; jpayne@68: PyObject *__pyx_n_s_BGZFile; jpayne@68: PyObject *__pyx_n_u_BGZFile; jpayne@68: PyObject *__pyx_n_s_BGZFile___enter; jpayne@68: PyObject *__pyx_n_s_BGZFile___exit; jpayne@68: PyObject *__pyx_n_s_BGZFile___reduce_cython; jpayne@68: PyObject *__pyx_n_s_BGZFile___setstate_cython; jpayne@68: PyObject *__pyx_n_s_BGZFile_close; jpayne@68: PyObject *__pyx_n_s_BGZFile_fileno; jpayne@68: PyObject *__pyx_n_s_BGZFile_flush; jpayne@68: PyObject *__pyx_n_s_BGZFile_read; jpayne@68: PyObject *__pyx_n_s_BGZFile_readable; jpayne@68: PyObject *__pyx_n_s_BGZFile_readline; jpayne@68: PyObject *__pyx_n_s_BGZFile_rewind; jpayne@68: PyObject *__pyx_n_s_BGZFile_seek; jpayne@68: PyObject *__pyx_n_s_BGZFile_seekable; jpayne@68: PyObject *__pyx_n_s_BGZFile_tell; jpayne@68: PyObject *__pyx_n_s_BGZFile_writable; jpayne@68: PyObject *__pyx_n_s_BGZFile_write; jpayne@68: PyObject *__pyx_kp_u_BGZFile_write_failed; jpayne@68: PyObject *__pyx_n_s_BUFFER_SIZE; jpayne@68: PyObject *__pyx_kp_u_Can_t_rewind_in_write_mode; jpayne@68: PyObject *__pyx_kp_u_Cannot_write_index; jpayne@68: PyObject *__pyx_n_s_DEFAULT_BUFFER_SIZE; jpayne@68: PyObject *__pyx_n_s_EBADF; jpayne@68: PyObject *__pyx_kp_u_Error_building_bgzf_index; jpayne@68: PyObject *__pyx_kp_u_Error_closing_BGZFile_object; jpayne@68: PyObject *__pyx_kp_u_Error_flushing_BGZFile_object; jpayne@68: PyObject *__pyx_kp_u_Error_in_tell_on_BGZFFile_object; jpayne@68: PyObject *__pyx_kp_u_Error_reading_from_BGZFile; jpayne@68: PyObject *__pyx_kp_u_Error_reading_line_in_BGZFFile_o; jpayne@68: PyObject *__pyx_kp_u_Error_seeking_BGZFFile_object; jpayne@68: PyObject *__pyx_n_s_IOError; jpayne@68: PyObject *__pyx_kp_u_Invalid_mode_r; jpayne@68: PyObject *__pyx_n_s_MemoryError; jpayne@68: PyObject *__pyx_n_s_SEEK_SET; jpayne@68: PyObject *__pyx_kp_u_Seek_from_end_not_supported; jpayne@68: PyObject *__pyx_n_s_StopIteration; jpayne@68: PyObject *__pyx_n_s_TypeError; jpayne@68: PyObject *__pyx_n_u_U; jpayne@68: PyObject *__pyx_n_s_ValueError; jpayne@68: PyObject *__pyx_n_s__3; jpayne@68: PyObject *__pyx_n_s__48; jpayne@68: PyObject *__pyx_kp_b__7; jpayne@68: PyObject *__pyx_n_s_all; jpayne@68: PyObject *__pyx_n_s_asyncio_coroutines; jpayne@68: PyObject *__pyx_n_u_b; jpayne@68: PyObject *__pyx_n_s_c; jpayne@68: PyObject *__pyx_n_s_cdata; jpayne@68: PyObject *__pyx_n_s_chunk; jpayne@68: PyObject *__pyx_n_s_chunks; jpayne@68: PyObject *__pyx_n_s_cline_in_traceback; jpayne@68: PyObject *__pyx_n_s_close; jpayne@68: PyObject *__pyx_n_s_data; jpayne@68: PyObject *__pyx_kp_u_disable; jpayne@68: PyObject *__pyx_kp_u_enable; jpayne@68: PyObject *__pyx_n_s_enter; jpayne@68: PyObject *__pyx_n_s_errno; jpayne@68: PyObject *__pyx_n_s_exit; jpayne@68: PyObject *__pyx_n_s_filename; jpayne@68: PyObject *__pyx_n_s_fileno; jpayne@68: PyObject *__pyx_n_u_fileno; jpayne@68: PyObject *__pyx_n_s_flush; jpayne@68: PyObject *__pyx_n_s_format; jpayne@68: PyObject *__pyx_kp_u_gc; jpayne@68: PyObject *__pyx_n_s_getstate; jpayne@68: PyObject *__pyx_n_s_import; jpayne@68: PyObject *__pyx_n_s_index; jpayne@68: PyObject *__pyx_n_s_initializing; jpayne@68: PyObject *__pyx_n_s_io; jpayne@68: PyObject *__pyx_n_s_is_coroutine; jpayne@68: PyObject *__pyx_kp_u_isenabled; jpayne@68: PyObject *__pyx_n_s_join; jpayne@68: PyObject *__pyx_n_s_length; jpayne@68: PyObject *__pyx_n_s_line; jpayne@68: PyObject *__pyx_n_s_main; jpayne@68: PyObject *__pyx_n_s_mode; jpayne@68: PyObject *__pyx_n_s_name; jpayne@68: PyObject *__pyx_n_s_nbytes; jpayne@68: PyObject *__pyx_n_s_off; jpayne@68: PyObject *__pyx_n_s_offset; jpayne@68: PyObject *__pyx_n_s_pysam_libcbgzf; jpayne@68: PyObject *__pyx_kp_s_pysam_libcbgzf_pyx; jpayne@68: PyObject *__pyx_n_s_pyx_state; jpayne@68: PyObject *__pyx_n_s_pyx_vtable; jpayne@68: PyObject *__pyx_n_u_rb; jpayne@68: PyObject *__pyx_n_s_read; jpayne@68: PyObject *__pyx_kp_u_read_on_closed_BGZFile_object; jpayne@68: PyObject *__pyx_kp_u_read_on_write_only_BGZFile_objec; jpayne@68: PyObject *__pyx_n_s_read_size; jpayne@68: PyObject *__pyx_n_s_readable; jpayne@68: PyObject *__pyx_kp_u_readable_on_closed_BGZFile_objec; jpayne@68: PyObject *__pyx_n_s_readline; jpayne@68: PyObject *__pyx_kp_u_readline_on_closed_BGZFile_objec; jpayne@68: PyObject *__pyx_n_s_reduce; jpayne@68: PyObject *__pyx_n_s_reduce_cython; jpayne@68: PyObject *__pyx_n_s_reduce_ex; jpayne@68: PyObject *__pyx_n_s_ret; jpayne@68: PyObject *__pyx_n_s_rewind; jpayne@68: PyObject *__pyx_kp_u_rewind_on_closed_BGZFile_object; jpayne@68: PyObject *__pyx_n_s_s; jpayne@68: PyObject *__pyx_n_s_seek; jpayne@68: PyObject *__pyx_kp_u_seek_on_closed_BGZFile_object; jpayne@68: PyObject *__pyx_n_s_seekable; jpayne@68: PyObject *__pyx_n_s_self; jpayne@68: PyObject *__pyx_kp_s_self_bgzf_cannot_be_converted_to; jpayne@68: PyObject *__pyx_n_s_setstate; jpayne@68: PyObject *__pyx_n_s_setstate_cython; jpayne@68: PyObject *__pyx_n_s_size; jpayne@68: PyObject *__pyx_n_s_spec; jpayne@68: PyObject *__pyx_kp_s_stringsource; jpayne@68: PyObject *__pyx_n_u_t; jpayne@68: PyObject *__pyx_n_s_tb; jpayne@68: PyObject *__pyx_n_s_tell; jpayne@68: PyObject *__pyx_n_s_test; jpayne@68: PyObject *__pyx_n_s_type; jpayne@68: PyObject *__pyx_n_s_value; jpayne@68: PyObject *__pyx_n_s_whence; jpayne@68: PyObject *__pyx_n_s_writable; jpayne@68: PyObject *__pyx_n_s_write; jpayne@68: PyObject *__pyx_kp_u_write_on_closed_BGZFile_object; jpayne@68: PyObject *__pyx_kp_u_write_on_read_only_BGZFile_objec; jpayne@68: PyObject *__pyx_int_0; jpayne@68: PyObject *__pyx_int_neg_1; jpayne@68: PyObject *__pyx_k__18; jpayne@68: PyObject *__pyx_tuple_; jpayne@68: PyObject *__pyx_tuple__2; jpayne@68: PyObject *__pyx_tuple__4; jpayne@68: PyObject *__pyx_tuple__5; jpayne@68: PyObject *__pyx_tuple__6; jpayne@68: PyObject *__pyx_tuple__8; jpayne@68: PyObject *__pyx_tuple__9; jpayne@68: PyObject *__pyx_tuple__10; jpayne@68: PyObject *__pyx_tuple__11; jpayne@68: PyObject *__pyx_tuple__12; jpayne@68: PyObject *__pyx_tuple__13; jpayne@68: PyObject *__pyx_tuple__14; jpayne@68: PyObject *__pyx_tuple__15; jpayne@68: PyObject *__pyx_tuple__16; jpayne@68: PyObject *__pyx_tuple__17; jpayne@68: PyObject *__pyx_tuple__19; jpayne@68: PyObject *__pyx_tuple__20; jpayne@68: PyObject *__pyx_tuple__21; jpayne@68: PyObject *__pyx_tuple__22; jpayne@68: PyObject *__pyx_tuple__24; jpayne@68: PyObject *__pyx_tuple__26; jpayne@68: PyObject *__pyx_tuple__27; jpayne@68: PyObject *__pyx_tuple__29; jpayne@68: PyObject *__pyx_tuple__31; jpayne@68: PyObject *__pyx_tuple__39; jpayne@68: PyObject *__pyx_tuple__41; jpayne@68: PyObject *__pyx_tuple__43; jpayne@68: PyObject *__pyx_tuple__46; jpayne@68: PyObject *__pyx_codeobj__23; jpayne@68: PyObject *__pyx_codeobj__25; jpayne@68: PyObject *__pyx_codeobj__28; jpayne@68: PyObject *__pyx_codeobj__30; jpayne@68: PyObject *__pyx_codeobj__32; jpayne@68: PyObject *__pyx_codeobj__33; jpayne@68: PyObject *__pyx_codeobj__34; jpayne@68: PyObject *__pyx_codeobj__35; jpayne@68: PyObject *__pyx_codeobj__36; jpayne@68: PyObject *__pyx_codeobj__37; jpayne@68: PyObject *__pyx_codeobj__38; jpayne@68: PyObject *__pyx_codeobj__40; jpayne@68: PyObject *__pyx_codeobj__42; jpayne@68: PyObject *__pyx_codeobj__44; jpayne@68: PyObject *__pyx_codeobj__45; jpayne@68: PyObject *__pyx_codeobj__47; jpayne@68: } __pyx_mstate; jpayne@68: jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #ifdef __cplusplus jpayne@68: namespace { jpayne@68: extern struct PyModuleDef __pyx_moduledef; jpayne@68: } /* anonymous namespace */ jpayne@68: #else jpayne@68: static struct PyModuleDef __pyx_moduledef; jpayne@68: #endif jpayne@68: jpayne@68: #define __pyx_mstate(o) ((__pyx_mstate *)__Pyx_PyModule_GetState(o)) jpayne@68: jpayne@68: #define __pyx_mstate_global (__pyx_mstate(PyState_FindModule(&__pyx_moduledef))) jpayne@68: jpayne@68: #define __pyx_m (PyState_FindModule(&__pyx_moduledef)) jpayne@68: #else jpayne@68: static __pyx_mstate __pyx_mstate_global_static = jpayne@68: #ifdef __cplusplus jpayne@68: {}; jpayne@68: #else jpayne@68: {0}; jpayne@68: #endif jpayne@68: static __pyx_mstate *__pyx_mstate_global = &__pyx_mstate_global_static; jpayne@68: #endif jpayne@68: /* #### Code section: module_state_clear ### */ jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: static int __pyx_m_clear(PyObject *m) { jpayne@68: __pyx_mstate *clear_module_state = __pyx_mstate(m); jpayne@68: if (!clear_module_state) return 0; jpayne@68: Py_CLEAR(clear_module_state->__pyx_d); jpayne@68: Py_CLEAR(clear_module_state->__pyx_b); jpayne@68: Py_CLEAR(clear_module_state->__pyx_cython_runtime); jpayne@68: Py_CLEAR(clear_module_state->__pyx_empty_tuple); jpayne@68: Py_CLEAR(clear_module_state->__pyx_empty_bytes); jpayne@68: Py_CLEAR(clear_module_state->__pyx_empty_unicode); jpayne@68: #ifdef __Pyx_CyFunction_USED jpayne@68: Py_CLEAR(clear_module_state->__pyx_CyFunctionType); jpayne@68: #endif jpayne@68: #ifdef __Pyx_FusedFunction_USED jpayne@68: Py_CLEAR(clear_module_state->__pyx_FusedFunctionType); jpayne@68: #endif jpayne@68: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_10libchtslib_HTSFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_ptype_7cpython_4type_type); jpayne@68: Py_CLEAR(clear_module_state->__pyx_ptype_7cpython_4bool_bool); jpayne@68: Py_CLEAR(clear_module_state->__pyx_ptype_7cpython_7complex_complex); jpayne@68: Py_CLEAR(clear_module_state->__pyx_ptype_7cpython_5array_array); jpayne@68: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_8libcbgzf_BGZFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_type_5pysam_8libcbgzf_BGZFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_AttributeError); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_BGZFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_BGZFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_BGZFile___enter); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_BGZFile___exit); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_BGZFile___reduce_cython); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_BGZFile___setstate_cython); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_BGZFile_close); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_BGZFile_fileno); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_BGZFile_flush); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_BGZFile_read); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_BGZFile_readable); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_BGZFile_readline); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_BGZFile_rewind); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_BGZFile_seek); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_BGZFile_seekable); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_BGZFile_tell); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_BGZFile_writable); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_BGZFile_write); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_BGZFile_write_failed); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_BUFFER_SIZE); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_Can_t_rewind_in_write_mode); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_Cannot_write_index); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_DEFAULT_BUFFER_SIZE); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_EBADF); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_Error_building_bgzf_index); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_Error_closing_BGZFile_object); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_Error_flushing_BGZFile_object); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_Error_in_tell_on_BGZFFile_object); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_Error_reading_from_BGZFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_Error_reading_line_in_BGZFFile_o); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_Error_seeking_BGZFFile_object); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_IOError); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_Invalid_mode_r); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_MemoryError); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_SEEK_SET); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_Seek_from_end_not_supported); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_StopIteration); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_TypeError); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_U); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_ValueError); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s__3); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s__48); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_b__7); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_all); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_asyncio_coroutines); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_b); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_c); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_cdata); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_chunk); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_chunks); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_cline_in_traceback); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_close); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_data); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_disable); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_enable); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_enter); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_errno); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_exit); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_filename); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_fileno); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_fileno); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_flush); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_format); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_gc); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_getstate); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_import); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_index); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_initializing); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_io); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_is_coroutine); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_isenabled); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_join); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_length); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_line); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_main); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_mode); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_name); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_nbytes); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_off); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_offset); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_pysam_libcbgzf); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_s_pysam_libcbgzf_pyx); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_pyx_state); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_pyx_vtable); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_rb); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_read); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_read_on_closed_BGZFile_object); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_read_on_write_only_BGZFile_objec); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_read_size); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_readable); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_readable_on_closed_BGZFile_objec); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_readline); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_readline_on_closed_BGZFile_objec); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_reduce); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_reduce_cython); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_reduce_ex); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_ret); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_rewind); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_rewind_on_closed_BGZFile_object); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_s); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_seek); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_seek_on_closed_BGZFile_object); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_seekable); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_self); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_s_self_bgzf_cannot_be_converted_to); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_setstate); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_setstate_cython); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_size); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_spec); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_s_stringsource); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_t); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_tb); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_tell); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_test); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_type); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_value); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_whence); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_writable); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_write); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_write_on_closed_BGZFile_object); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_write_on_read_only_BGZFile_objec); jpayne@68: Py_CLEAR(clear_module_state->__pyx_int_0); jpayne@68: Py_CLEAR(clear_module_state->__pyx_int_neg_1); jpayne@68: Py_CLEAR(clear_module_state->__pyx_k__18); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple_); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__2); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__4); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__5); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__6); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__8); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__9); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__10); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__11); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__12); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__13); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__14); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__15); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__16); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__17); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__19); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__20); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__21); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__22); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__24); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__26); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__27); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__29); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__31); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__39); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__41); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__43); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__46); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__23); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__25); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__28); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__30); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__32); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__33); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__34); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__35); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__36); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__37); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__38); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__40); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__42); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__44); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__45); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__47); jpayne@68: return 0; jpayne@68: } jpayne@68: #endif jpayne@68: /* #### Code section: module_state_traverse ### */ jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: static int __pyx_m_traverse(PyObject *m, visitproc visit, void *arg) { jpayne@68: __pyx_mstate *traverse_module_state = __pyx_mstate(m); jpayne@68: if (!traverse_module_state) return 0; jpayne@68: Py_VISIT(traverse_module_state->__pyx_d); jpayne@68: Py_VISIT(traverse_module_state->__pyx_b); jpayne@68: Py_VISIT(traverse_module_state->__pyx_cython_runtime); jpayne@68: Py_VISIT(traverse_module_state->__pyx_empty_tuple); jpayne@68: Py_VISIT(traverse_module_state->__pyx_empty_bytes); jpayne@68: Py_VISIT(traverse_module_state->__pyx_empty_unicode); jpayne@68: #ifdef __Pyx_CyFunction_USED jpayne@68: Py_VISIT(traverse_module_state->__pyx_CyFunctionType); jpayne@68: #endif jpayne@68: #ifdef __Pyx_FusedFunction_USED jpayne@68: Py_VISIT(traverse_module_state->__pyx_FusedFunctionType); jpayne@68: #endif jpayne@68: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_10libchtslib_HTSFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_ptype_7cpython_4type_type); jpayne@68: Py_VISIT(traverse_module_state->__pyx_ptype_7cpython_4bool_bool); jpayne@68: Py_VISIT(traverse_module_state->__pyx_ptype_7cpython_7complex_complex); jpayne@68: Py_VISIT(traverse_module_state->__pyx_ptype_7cpython_5array_array); jpayne@68: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_8libcbgzf_BGZFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_type_5pysam_8libcbgzf_BGZFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_AttributeError); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_BGZFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_BGZFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_BGZFile___enter); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_BGZFile___exit); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_BGZFile___reduce_cython); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_BGZFile___setstate_cython); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_BGZFile_close); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_BGZFile_fileno); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_BGZFile_flush); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_BGZFile_read); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_BGZFile_readable); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_BGZFile_readline); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_BGZFile_rewind); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_BGZFile_seek); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_BGZFile_seekable); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_BGZFile_tell); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_BGZFile_writable); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_BGZFile_write); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_BGZFile_write_failed); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_BUFFER_SIZE); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_Can_t_rewind_in_write_mode); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_Cannot_write_index); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_DEFAULT_BUFFER_SIZE); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_EBADF); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_Error_building_bgzf_index); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_Error_closing_BGZFile_object); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_Error_flushing_BGZFile_object); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_Error_in_tell_on_BGZFFile_object); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_Error_reading_from_BGZFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_Error_reading_line_in_BGZFFile_o); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_Error_seeking_BGZFFile_object); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_IOError); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_Invalid_mode_r); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_MemoryError); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_SEEK_SET); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_Seek_from_end_not_supported); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_StopIteration); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_TypeError); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_U); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_ValueError); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s__3); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s__48); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_b__7); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_all); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_asyncio_coroutines); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_b); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_c); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_cdata); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_chunk); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_chunks); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_cline_in_traceback); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_close); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_data); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_disable); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_enable); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_enter); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_errno); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_exit); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_filename); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_fileno); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_fileno); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_flush); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_format); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_gc); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_getstate); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_import); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_index); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_initializing); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_io); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_is_coroutine); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_isenabled); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_join); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_length); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_line); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_main); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_mode); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_name); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_nbytes); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_off); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_offset); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_pysam_libcbgzf); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_s_pysam_libcbgzf_pyx); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_pyx_state); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_pyx_vtable); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_rb); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_read); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_read_on_closed_BGZFile_object); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_read_on_write_only_BGZFile_objec); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_read_size); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_readable); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_readable_on_closed_BGZFile_objec); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_readline); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_readline_on_closed_BGZFile_objec); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_reduce); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_reduce_cython); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_reduce_ex); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_ret); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_rewind); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_rewind_on_closed_BGZFile_object); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_s); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_seek); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_seek_on_closed_BGZFile_object); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_seekable); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_self); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_s_self_bgzf_cannot_be_converted_to); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_setstate); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_setstate_cython); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_size); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_spec); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_s_stringsource); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_t); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_tb); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_tell); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_test); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_type); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_value); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_whence); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_writable); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_write); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_write_on_closed_BGZFile_object); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_write_on_read_only_BGZFile_objec); jpayne@68: Py_VISIT(traverse_module_state->__pyx_int_0); jpayne@68: Py_VISIT(traverse_module_state->__pyx_int_neg_1); jpayne@68: Py_VISIT(traverse_module_state->__pyx_k__18); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple_); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__2); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__4); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__5); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__6); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__8); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__9); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__10); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__11); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__12); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__13); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__14); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__15); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__16); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__17); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__19); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__20); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__21); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__22); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__24); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__26); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__27); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__29); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__31); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__39); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__41); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__43); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__46); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__23); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__25); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__28); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__30); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__32); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__33); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__34); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__35); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__36); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__37); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__38); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__40); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__42); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__44); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__45); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__47); jpayne@68: return 0; jpayne@68: } jpayne@68: #endif jpayne@68: /* #### Code section: module_state_defines ### */ jpayne@68: #define __pyx_d __pyx_mstate_global->__pyx_d jpayne@68: #define __pyx_b __pyx_mstate_global->__pyx_b jpayne@68: #define __pyx_cython_runtime __pyx_mstate_global->__pyx_cython_runtime jpayne@68: #define __pyx_empty_tuple __pyx_mstate_global->__pyx_empty_tuple jpayne@68: #define __pyx_empty_bytes __pyx_mstate_global->__pyx_empty_bytes jpayne@68: #define __pyx_empty_unicode __pyx_mstate_global->__pyx_empty_unicode jpayne@68: #ifdef __Pyx_CyFunction_USED jpayne@68: #define __pyx_CyFunctionType __pyx_mstate_global->__pyx_CyFunctionType jpayne@68: #endif jpayne@68: #ifdef __Pyx_FusedFunction_USED jpayne@68: #define __pyx_FusedFunctionType __pyx_mstate_global->__pyx_FusedFunctionType jpayne@68: #endif jpayne@68: #ifdef __Pyx_Generator_USED jpayne@68: #define __pyx_GeneratorType __pyx_mstate_global->__pyx_GeneratorType jpayne@68: #endif jpayne@68: #ifdef __Pyx_IterableCoroutine_USED jpayne@68: #define __pyx_IterableCoroutineType __pyx_mstate_global->__pyx_IterableCoroutineType jpayne@68: #endif jpayne@68: #ifdef __Pyx_Coroutine_USED jpayne@68: #define __pyx_CoroutineAwaitType __pyx_mstate_global->__pyx_CoroutineAwaitType jpayne@68: #endif jpayne@68: #ifdef __Pyx_Coroutine_USED jpayne@68: #define __pyx_CoroutineType __pyx_mstate_global->__pyx_CoroutineType jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #define __pyx_ptype_5pysam_10libchtslib_HTSFile __pyx_mstate_global->__pyx_ptype_5pysam_10libchtslib_HTSFile jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #define __pyx_ptype_7cpython_4type_type __pyx_mstate_global->__pyx_ptype_7cpython_4type_type jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #define __pyx_ptype_7cpython_4bool_bool __pyx_mstate_global->__pyx_ptype_7cpython_4bool_bool jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #define __pyx_ptype_7cpython_7complex_complex __pyx_mstate_global->__pyx_ptype_7cpython_7complex_complex jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #define __pyx_ptype_7cpython_5array_array __pyx_mstate_global->__pyx_ptype_7cpython_5array_array jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #define __pyx_type_5pysam_8libcbgzf_BGZFile __pyx_mstate_global->__pyx_type_5pysam_8libcbgzf_BGZFile jpayne@68: #endif jpayne@68: #define __pyx_ptype_5pysam_8libcbgzf_BGZFile __pyx_mstate_global->__pyx_ptype_5pysam_8libcbgzf_BGZFile jpayne@68: #define __pyx_n_s_AttributeError __pyx_mstate_global->__pyx_n_s_AttributeError jpayne@68: #define __pyx_n_s_BGZFile __pyx_mstate_global->__pyx_n_s_BGZFile jpayne@68: #define __pyx_n_u_BGZFile __pyx_mstate_global->__pyx_n_u_BGZFile jpayne@68: #define __pyx_n_s_BGZFile___enter __pyx_mstate_global->__pyx_n_s_BGZFile___enter jpayne@68: #define __pyx_n_s_BGZFile___exit __pyx_mstate_global->__pyx_n_s_BGZFile___exit jpayne@68: #define __pyx_n_s_BGZFile___reduce_cython __pyx_mstate_global->__pyx_n_s_BGZFile___reduce_cython jpayne@68: #define __pyx_n_s_BGZFile___setstate_cython __pyx_mstate_global->__pyx_n_s_BGZFile___setstate_cython jpayne@68: #define __pyx_n_s_BGZFile_close __pyx_mstate_global->__pyx_n_s_BGZFile_close jpayne@68: #define __pyx_n_s_BGZFile_fileno __pyx_mstate_global->__pyx_n_s_BGZFile_fileno jpayne@68: #define __pyx_n_s_BGZFile_flush __pyx_mstate_global->__pyx_n_s_BGZFile_flush jpayne@68: #define __pyx_n_s_BGZFile_read __pyx_mstate_global->__pyx_n_s_BGZFile_read jpayne@68: #define __pyx_n_s_BGZFile_readable __pyx_mstate_global->__pyx_n_s_BGZFile_readable jpayne@68: #define __pyx_n_s_BGZFile_readline __pyx_mstate_global->__pyx_n_s_BGZFile_readline jpayne@68: #define __pyx_n_s_BGZFile_rewind __pyx_mstate_global->__pyx_n_s_BGZFile_rewind jpayne@68: #define __pyx_n_s_BGZFile_seek __pyx_mstate_global->__pyx_n_s_BGZFile_seek jpayne@68: #define __pyx_n_s_BGZFile_seekable __pyx_mstate_global->__pyx_n_s_BGZFile_seekable jpayne@68: #define __pyx_n_s_BGZFile_tell __pyx_mstate_global->__pyx_n_s_BGZFile_tell jpayne@68: #define __pyx_n_s_BGZFile_writable __pyx_mstate_global->__pyx_n_s_BGZFile_writable jpayne@68: #define __pyx_n_s_BGZFile_write __pyx_mstate_global->__pyx_n_s_BGZFile_write jpayne@68: #define __pyx_kp_u_BGZFile_write_failed __pyx_mstate_global->__pyx_kp_u_BGZFile_write_failed jpayne@68: #define __pyx_n_s_BUFFER_SIZE __pyx_mstate_global->__pyx_n_s_BUFFER_SIZE jpayne@68: #define __pyx_kp_u_Can_t_rewind_in_write_mode __pyx_mstate_global->__pyx_kp_u_Can_t_rewind_in_write_mode jpayne@68: #define __pyx_kp_u_Cannot_write_index __pyx_mstate_global->__pyx_kp_u_Cannot_write_index jpayne@68: #define __pyx_n_s_DEFAULT_BUFFER_SIZE __pyx_mstate_global->__pyx_n_s_DEFAULT_BUFFER_SIZE jpayne@68: #define __pyx_n_s_EBADF __pyx_mstate_global->__pyx_n_s_EBADF jpayne@68: #define __pyx_kp_u_Error_building_bgzf_index __pyx_mstate_global->__pyx_kp_u_Error_building_bgzf_index jpayne@68: #define __pyx_kp_u_Error_closing_BGZFile_object __pyx_mstate_global->__pyx_kp_u_Error_closing_BGZFile_object jpayne@68: #define __pyx_kp_u_Error_flushing_BGZFile_object __pyx_mstate_global->__pyx_kp_u_Error_flushing_BGZFile_object jpayne@68: #define __pyx_kp_u_Error_in_tell_on_BGZFFile_object __pyx_mstate_global->__pyx_kp_u_Error_in_tell_on_BGZFFile_object jpayne@68: #define __pyx_kp_u_Error_reading_from_BGZFile __pyx_mstate_global->__pyx_kp_u_Error_reading_from_BGZFile jpayne@68: #define __pyx_kp_u_Error_reading_line_in_BGZFFile_o __pyx_mstate_global->__pyx_kp_u_Error_reading_line_in_BGZFFile_o jpayne@68: #define __pyx_kp_u_Error_seeking_BGZFFile_object __pyx_mstate_global->__pyx_kp_u_Error_seeking_BGZFFile_object jpayne@68: #define __pyx_n_s_IOError __pyx_mstate_global->__pyx_n_s_IOError jpayne@68: #define __pyx_kp_u_Invalid_mode_r __pyx_mstate_global->__pyx_kp_u_Invalid_mode_r jpayne@68: #define __pyx_n_s_MemoryError __pyx_mstate_global->__pyx_n_s_MemoryError jpayne@68: #define __pyx_n_s_SEEK_SET __pyx_mstate_global->__pyx_n_s_SEEK_SET jpayne@68: #define __pyx_kp_u_Seek_from_end_not_supported __pyx_mstate_global->__pyx_kp_u_Seek_from_end_not_supported jpayne@68: #define __pyx_n_s_StopIteration __pyx_mstate_global->__pyx_n_s_StopIteration jpayne@68: #define __pyx_n_s_TypeError __pyx_mstate_global->__pyx_n_s_TypeError jpayne@68: #define __pyx_n_u_U __pyx_mstate_global->__pyx_n_u_U jpayne@68: #define __pyx_n_s_ValueError __pyx_mstate_global->__pyx_n_s_ValueError jpayne@68: #define __pyx_n_s__3 __pyx_mstate_global->__pyx_n_s__3 jpayne@68: #define __pyx_n_s__48 __pyx_mstate_global->__pyx_n_s__48 jpayne@68: #define __pyx_kp_b__7 __pyx_mstate_global->__pyx_kp_b__7 jpayne@68: #define __pyx_n_s_all __pyx_mstate_global->__pyx_n_s_all jpayne@68: #define __pyx_n_s_asyncio_coroutines __pyx_mstate_global->__pyx_n_s_asyncio_coroutines jpayne@68: #define __pyx_n_u_b __pyx_mstate_global->__pyx_n_u_b jpayne@68: #define __pyx_n_s_c __pyx_mstate_global->__pyx_n_s_c jpayne@68: #define __pyx_n_s_cdata __pyx_mstate_global->__pyx_n_s_cdata jpayne@68: #define __pyx_n_s_chunk __pyx_mstate_global->__pyx_n_s_chunk jpayne@68: #define __pyx_n_s_chunks __pyx_mstate_global->__pyx_n_s_chunks jpayne@68: #define __pyx_n_s_cline_in_traceback __pyx_mstate_global->__pyx_n_s_cline_in_traceback jpayne@68: #define __pyx_n_s_close __pyx_mstate_global->__pyx_n_s_close jpayne@68: #define __pyx_n_s_data __pyx_mstate_global->__pyx_n_s_data jpayne@68: #define __pyx_kp_u_disable __pyx_mstate_global->__pyx_kp_u_disable jpayne@68: #define __pyx_kp_u_enable __pyx_mstate_global->__pyx_kp_u_enable jpayne@68: #define __pyx_n_s_enter __pyx_mstate_global->__pyx_n_s_enter jpayne@68: #define __pyx_n_s_errno __pyx_mstate_global->__pyx_n_s_errno jpayne@68: #define __pyx_n_s_exit __pyx_mstate_global->__pyx_n_s_exit jpayne@68: #define __pyx_n_s_filename __pyx_mstate_global->__pyx_n_s_filename jpayne@68: #define __pyx_n_s_fileno __pyx_mstate_global->__pyx_n_s_fileno jpayne@68: #define __pyx_n_u_fileno __pyx_mstate_global->__pyx_n_u_fileno jpayne@68: #define __pyx_n_s_flush __pyx_mstate_global->__pyx_n_s_flush jpayne@68: #define __pyx_n_s_format __pyx_mstate_global->__pyx_n_s_format jpayne@68: #define __pyx_kp_u_gc __pyx_mstate_global->__pyx_kp_u_gc jpayne@68: #define __pyx_n_s_getstate __pyx_mstate_global->__pyx_n_s_getstate jpayne@68: #define __pyx_n_s_import __pyx_mstate_global->__pyx_n_s_import jpayne@68: #define __pyx_n_s_index __pyx_mstate_global->__pyx_n_s_index jpayne@68: #define __pyx_n_s_initializing __pyx_mstate_global->__pyx_n_s_initializing jpayne@68: #define __pyx_n_s_io __pyx_mstate_global->__pyx_n_s_io jpayne@68: #define __pyx_n_s_is_coroutine __pyx_mstate_global->__pyx_n_s_is_coroutine jpayne@68: #define __pyx_kp_u_isenabled __pyx_mstate_global->__pyx_kp_u_isenabled jpayne@68: #define __pyx_n_s_join __pyx_mstate_global->__pyx_n_s_join jpayne@68: #define __pyx_n_s_length __pyx_mstate_global->__pyx_n_s_length jpayne@68: #define __pyx_n_s_line __pyx_mstate_global->__pyx_n_s_line jpayne@68: #define __pyx_n_s_main __pyx_mstate_global->__pyx_n_s_main jpayne@68: #define __pyx_n_s_mode __pyx_mstate_global->__pyx_n_s_mode jpayne@68: #define __pyx_n_s_name __pyx_mstate_global->__pyx_n_s_name jpayne@68: #define __pyx_n_s_nbytes __pyx_mstate_global->__pyx_n_s_nbytes jpayne@68: #define __pyx_n_s_off __pyx_mstate_global->__pyx_n_s_off jpayne@68: #define __pyx_n_s_offset __pyx_mstate_global->__pyx_n_s_offset jpayne@68: #define __pyx_n_s_pysam_libcbgzf __pyx_mstate_global->__pyx_n_s_pysam_libcbgzf jpayne@68: #define __pyx_kp_s_pysam_libcbgzf_pyx __pyx_mstate_global->__pyx_kp_s_pysam_libcbgzf_pyx jpayne@68: #define __pyx_n_s_pyx_state __pyx_mstate_global->__pyx_n_s_pyx_state jpayne@68: #define __pyx_n_s_pyx_vtable __pyx_mstate_global->__pyx_n_s_pyx_vtable jpayne@68: #define __pyx_n_u_rb __pyx_mstate_global->__pyx_n_u_rb jpayne@68: #define __pyx_n_s_read __pyx_mstate_global->__pyx_n_s_read jpayne@68: #define __pyx_kp_u_read_on_closed_BGZFile_object __pyx_mstate_global->__pyx_kp_u_read_on_closed_BGZFile_object jpayne@68: #define __pyx_kp_u_read_on_write_only_BGZFile_objec __pyx_mstate_global->__pyx_kp_u_read_on_write_only_BGZFile_objec jpayne@68: #define __pyx_n_s_read_size __pyx_mstate_global->__pyx_n_s_read_size jpayne@68: #define __pyx_n_s_readable __pyx_mstate_global->__pyx_n_s_readable jpayne@68: #define __pyx_kp_u_readable_on_closed_BGZFile_objec __pyx_mstate_global->__pyx_kp_u_readable_on_closed_BGZFile_objec jpayne@68: #define __pyx_n_s_readline __pyx_mstate_global->__pyx_n_s_readline jpayne@68: #define __pyx_kp_u_readline_on_closed_BGZFile_objec __pyx_mstate_global->__pyx_kp_u_readline_on_closed_BGZFile_objec jpayne@68: #define __pyx_n_s_reduce __pyx_mstate_global->__pyx_n_s_reduce jpayne@68: #define __pyx_n_s_reduce_cython __pyx_mstate_global->__pyx_n_s_reduce_cython jpayne@68: #define __pyx_n_s_reduce_ex __pyx_mstate_global->__pyx_n_s_reduce_ex jpayne@68: #define __pyx_n_s_ret __pyx_mstate_global->__pyx_n_s_ret jpayne@68: #define __pyx_n_s_rewind __pyx_mstate_global->__pyx_n_s_rewind jpayne@68: #define __pyx_kp_u_rewind_on_closed_BGZFile_object __pyx_mstate_global->__pyx_kp_u_rewind_on_closed_BGZFile_object jpayne@68: #define __pyx_n_s_s __pyx_mstate_global->__pyx_n_s_s jpayne@68: #define __pyx_n_s_seek __pyx_mstate_global->__pyx_n_s_seek jpayne@68: #define __pyx_kp_u_seek_on_closed_BGZFile_object __pyx_mstate_global->__pyx_kp_u_seek_on_closed_BGZFile_object jpayne@68: #define __pyx_n_s_seekable __pyx_mstate_global->__pyx_n_s_seekable jpayne@68: #define __pyx_n_s_self __pyx_mstate_global->__pyx_n_s_self jpayne@68: #define __pyx_kp_s_self_bgzf_cannot_be_converted_to __pyx_mstate_global->__pyx_kp_s_self_bgzf_cannot_be_converted_to jpayne@68: #define __pyx_n_s_setstate __pyx_mstate_global->__pyx_n_s_setstate jpayne@68: #define __pyx_n_s_setstate_cython __pyx_mstate_global->__pyx_n_s_setstate_cython jpayne@68: #define __pyx_n_s_size __pyx_mstate_global->__pyx_n_s_size jpayne@68: #define __pyx_n_s_spec __pyx_mstate_global->__pyx_n_s_spec jpayne@68: #define __pyx_kp_s_stringsource __pyx_mstate_global->__pyx_kp_s_stringsource jpayne@68: #define __pyx_n_u_t __pyx_mstate_global->__pyx_n_u_t jpayne@68: #define __pyx_n_s_tb __pyx_mstate_global->__pyx_n_s_tb jpayne@68: #define __pyx_n_s_tell __pyx_mstate_global->__pyx_n_s_tell jpayne@68: #define __pyx_n_s_test __pyx_mstate_global->__pyx_n_s_test jpayne@68: #define __pyx_n_s_type __pyx_mstate_global->__pyx_n_s_type jpayne@68: #define __pyx_n_s_value __pyx_mstate_global->__pyx_n_s_value jpayne@68: #define __pyx_n_s_whence __pyx_mstate_global->__pyx_n_s_whence jpayne@68: #define __pyx_n_s_writable __pyx_mstate_global->__pyx_n_s_writable jpayne@68: #define __pyx_n_s_write __pyx_mstate_global->__pyx_n_s_write jpayne@68: #define __pyx_kp_u_write_on_closed_BGZFile_object __pyx_mstate_global->__pyx_kp_u_write_on_closed_BGZFile_object jpayne@68: #define __pyx_kp_u_write_on_read_only_BGZFile_objec __pyx_mstate_global->__pyx_kp_u_write_on_read_only_BGZFile_objec jpayne@68: #define __pyx_int_0 __pyx_mstate_global->__pyx_int_0 jpayne@68: #define __pyx_int_neg_1 __pyx_mstate_global->__pyx_int_neg_1 jpayne@68: #define __pyx_k__18 __pyx_mstate_global->__pyx_k__18 jpayne@68: #define __pyx_tuple_ __pyx_mstate_global->__pyx_tuple_ jpayne@68: #define __pyx_tuple__2 __pyx_mstate_global->__pyx_tuple__2 jpayne@68: #define __pyx_tuple__4 __pyx_mstate_global->__pyx_tuple__4 jpayne@68: #define __pyx_tuple__5 __pyx_mstate_global->__pyx_tuple__5 jpayne@68: #define __pyx_tuple__6 __pyx_mstate_global->__pyx_tuple__6 jpayne@68: #define __pyx_tuple__8 __pyx_mstate_global->__pyx_tuple__8 jpayne@68: #define __pyx_tuple__9 __pyx_mstate_global->__pyx_tuple__9 jpayne@68: #define __pyx_tuple__10 __pyx_mstate_global->__pyx_tuple__10 jpayne@68: #define __pyx_tuple__11 __pyx_mstate_global->__pyx_tuple__11 jpayne@68: #define __pyx_tuple__12 __pyx_mstate_global->__pyx_tuple__12 jpayne@68: #define __pyx_tuple__13 __pyx_mstate_global->__pyx_tuple__13 jpayne@68: #define __pyx_tuple__14 __pyx_mstate_global->__pyx_tuple__14 jpayne@68: #define __pyx_tuple__15 __pyx_mstate_global->__pyx_tuple__15 jpayne@68: #define __pyx_tuple__16 __pyx_mstate_global->__pyx_tuple__16 jpayne@68: #define __pyx_tuple__17 __pyx_mstate_global->__pyx_tuple__17 jpayne@68: #define __pyx_tuple__19 __pyx_mstate_global->__pyx_tuple__19 jpayne@68: #define __pyx_tuple__20 __pyx_mstate_global->__pyx_tuple__20 jpayne@68: #define __pyx_tuple__21 __pyx_mstate_global->__pyx_tuple__21 jpayne@68: #define __pyx_tuple__22 __pyx_mstate_global->__pyx_tuple__22 jpayne@68: #define __pyx_tuple__24 __pyx_mstate_global->__pyx_tuple__24 jpayne@68: #define __pyx_tuple__26 __pyx_mstate_global->__pyx_tuple__26 jpayne@68: #define __pyx_tuple__27 __pyx_mstate_global->__pyx_tuple__27 jpayne@68: #define __pyx_tuple__29 __pyx_mstate_global->__pyx_tuple__29 jpayne@68: #define __pyx_tuple__31 __pyx_mstate_global->__pyx_tuple__31 jpayne@68: #define __pyx_tuple__39 __pyx_mstate_global->__pyx_tuple__39 jpayne@68: #define __pyx_tuple__41 __pyx_mstate_global->__pyx_tuple__41 jpayne@68: #define __pyx_tuple__43 __pyx_mstate_global->__pyx_tuple__43 jpayne@68: #define __pyx_tuple__46 __pyx_mstate_global->__pyx_tuple__46 jpayne@68: #define __pyx_codeobj__23 __pyx_mstate_global->__pyx_codeobj__23 jpayne@68: #define __pyx_codeobj__25 __pyx_mstate_global->__pyx_codeobj__25 jpayne@68: #define __pyx_codeobj__28 __pyx_mstate_global->__pyx_codeobj__28 jpayne@68: #define __pyx_codeobj__30 __pyx_mstate_global->__pyx_codeobj__30 jpayne@68: #define __pyx_codeobj__32 __pyx_mstate_global->__pyx_codeobj__32 jpayne@68: #define __pyx_codeobj__33 __pyx_mstate_global->__pyx_codeobj__33 jpayne@68: #define __pyx_codeobj__34 __pyx_mstate_global->__pyx_codeobj__34 jpayne@68: #define __pyx_codeobj__35 __pyx_mstate_global->__pyx_codeobj__35 jpayne@68: #define __pyx_codeobj__36 __pyx_mstate_global->__pyx_codeobj__36 jpayne@68: #define __pyx_codeobj__37 __pyx_mstate_global->__pyx_codeobj__37 jpayne@68: #define __pyx_codeobj__38 __pyx_mstate_global->__pyx_codeobj__38 jpayne@68: #define __pyx_codeobj__40 __pyx_mstate_global->__pyx_codeobj__40 jpayne@68: #define __pyx_codeobj__42 __pyx_mstate_global->__pyx_codeobj__42 jpayne@68: #define __pyx_codeobj__44 __pyx_mstate_global->__pyx_codeobj__44 jpayne@68: #define __pyx_codeobj__45 __pyx_mstate_global->__pyx_codeobj__45 jpayne@68: #define __pyx_codeobj__47 __pyx_mstate_global->__pyx_codeobj__47 jpayne@68: /* #### Code section: module_code ### */ jpayne@68: jpayne@68: /* "cpython/complex.pxd":19 jpayne@68: * jpayne@68: * @property jpayne@68: * cdef inline double real(self) noexcept: # <<<<<<<<<<<<<< jpayne@68: * return self.cval.real jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: static CYTHON_INLINE double __pyx_f_7cpython_7complex_7complex_4real_real(PyComplexObject *__pyx_v_self) { jpayne@68: double __pyx_r; jpayne@68: jpayne@68: /* "cpython/complex.pxd":20 jpayne@68: * @property jpayne@68: * cdef inline double real(self) noexcept: jpayne@68: * return self.cval.real # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * @property jpayne@68: */ jpayne@68: __pyx_r = __pyx_v_self->cval.real; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "cpython/complex.pxd":19 jpayne@68: * jpayne@68: * @property jpayne@68: * cdef inline double real(self) noexcept: # <<<<<<<<<<<<<< jpayne@68: * return self.cval.real jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L0:; jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "cpython/complex.pxd":23 jpayne@68: * jpayne@68: * @property jpayne@68: * cdef inline double imag(self) noexcept: # <<<<<<<<<<<<<< jpayne@68: * return self.cval.imag jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: static CYTHON_INLINE double __pyx_f_7cpython_7complex_7complex_4imag_imag(PyComplexObject *__pyx_v_self) { jpayne@68: double __pyx_r; jpayne@68: jpayne@68: /* "cpython/complex.pxd":24 jpayne@68: * @property jpayne@68: * cdef inline double imag(self) noexcept: jpayne@68: * return self.cval.imag # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * # PyTypeObject PyComplex_Type jpayne@68: */ jpayne@68: __pyx_r = __pyx_v_self->cval.imag; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "cpython/complex.pxd":23 jpayne@68: * jpayne@68: * @property jpayne@68: * cdef inline double imag(self) noexcept: # <<<<<<<<<<<<<< jpayne@68: * return self.cval.imag jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L0:; jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":112 jpayne@68: * jpayne@68: * jpayne@68: * cdef inline object get_value(var, default_value=None): # <<<<<<<<<<<<<< jpayne@68: * """Return a new reference to the value of the context variable, jpayne@68: * or the default value of the context variable, jpayne@68: */ jpayne@68: jpayne@68: static CYTHON_INLINE PyObject *__pyx_f_7cpython_11contextvars_get_value(PyObject *__pyx_v_var, struct __pyx_opt_args_7cpython_11contextvars_get_value *__pyx_optional_args) { jpayne@68: PyObject *__pyx_v_default_value = ((PyObject *)Py_None); jpayne@68: PyObject *__pyx_v_value; jpayne@68: PyObject *__pyx_v_pyvalue = NULL; jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_t_1; jpayne@68: int __pyx_t_2; jpayne@68: PyObject *__pyx_t_3 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("get_value", 1); jpayne@68: if (__pyx_optional_args) { jpayne@68: if (__pyx_optional_args->__pyx_n > 0) { jpayne@68: __pyx_v_default_value = __pyx_optional_args->default_value; jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":117 jpayne@68: * or None if no such value or default was found. jpayne@68: * """ jpayne@68: * cdef PyObject *value = NULL # <<<<<<<<<<<<<< jpayne@68: * PyContextVar_Get(var, NULL, &value) jpayne@68: * if value is NULL: jpayne@68: */ jpayne@68: __pyx_v_value = NULL; jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":118 jpayne@68: * """ jpayne@68: * cdef PyObject *value = NULL jpayne@68: * PyContextVar_Get(var, NULL, &value) # <<<<<<<<<<<<<< jpayne@68: * if value is NULL: jpayne@68: * # context variable does not have a default jpayne@68: */ jpayne@68: __pyx_t_1 = PyContextVar_Get(__pyx_v_var, NULL, (&__pyx_v_value)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(2, 118, __pyx_L1_error) jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":119 jpayne@68: * cdef PyObject *value = NULL jpayne@68: * PyContextVar_Get(var, NULL, &value) jpayne@68: * if value is NULL: # <<<<<<<<<<<<<< jpayne@68: * # context variable does not have a default jpayne@68: * pyvalue = default_value jpayne@68: */ jpayne@68: __pyx_t_2 = (__pyx_v_value == NULL); jpayne@68: if (__pyx_t_2) { jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":121 jpayne@68: * if value is NULL: jpayne@68: * # context variable does not have a default jpayne@68: * pyvalue = default_value # <<<<<<<<<<<<<< jpayne@68: * else: jpayne@68: * # value or default value of context variable jpayne@68: */ jpayne@68: __Pyx_INCREF(__pyx_v_default_value); jpayne@68: __pyx_v_pyvalue = __pyx_v_default_value; jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":119 jpayne@68: * cdef PyObject *value = NULL jpayne@68: * PyContextVar_Get(var, NULL, &value) jpayne@68: * if value is NULL: # <<<<<<<<<<<<<< jpayne@68: * # context variable does not have a default jpayne@68: * pyvalue = default_value jpayne@68: */ jpayne@68: goto __pyx_L3; jpayne@68: } jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":124 jpayne@68: * else: jpayne@68: * # value or default value of context variable jpayne@68: * pyvalue = value # <<<<<<<<<<<<<< jpayne@68: * Py_XDECREF(value) # PyContextVar_Get() returned an owned reference as 'PyObject*' jpayne@68: * return pyvalue jpayne@68: */ jpayne@68: /*else*/ { jpayne@68: __pyx_t_3 = ((PyObject *)__pyx_v_value); jpayne@68: __Pyx_INCREF(__pyx_t_3); jpayne@68: __pyx_v_pyvalue = __pyx_t_3; jpayne@68: __pyx_t_3 = 0; jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":125 jpayne@68: * # value or default value of context variable jpayne@68: * pyvalue = value jpayne@68: * Py_XDECREF(value) # PyContextVar_Get() returned an owned reference as 'PyObject*' # <<<<<<<<<<<<<< jpayne@68: * return pyvalue jpayne@68: * jpayne@68: */ jpayne@68: Py_XDECREF(__pyx_v_value); jpayne@68: } jpayne@68: __pyx_L3:; jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":126 jpayne@68: * pyvalue = value jpayne@68: * Py_XDECREF(value) # PyContextVar_Get() returned an owned reference as 'PyObject*' jpayne@68: * return pyvalue # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __Pyx_INCREF(__pyx_v_pyvalue); jpayne@68: __pyx_r = __pyx_v_pyvalue; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":112 jpayne@68: * jpayne@68: * jpayne@68: * cdef inline object get_value(var, default_value=None): # <<<<<<<<<<<<<< jpayne@68: * """Return a new reference to the value of the context variable, jpayne@68: * or the default value of the context variable, jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_3); jpayne@68: __Pyx_AddTraceback("cpython.contextvars.get_value", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = 0; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XDECREF(__pyx_v_pyvalue); jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":129 jpayne@68: * jpayne@68: * jpayne@68: * cdef inline object get_value_no_default(var, default_value=None): # <<<<<<<<<<<<<< jpayne@68: * """Return a new reference to the value of the context variable, jpayne@68: * or the provided default value if no such value was found. jpayne@68: */ jpayne@68: jpayne@68: static CYTHON_INLINE PyObject *__pyx_f_7cpython_11contextvars_get_value_no_default(PyObject *__pyx_v_var, struct __pyx_opt_args_7cpython_11contextvars_get_value_no_default *__pyx_optional_args) { jpayne@68: PyObject *__pyx_v_default_value = ((PyObject *)Py_None); jpayne@68: PyObject *__pyx_v_value; jpayne@68: PyObject *__pyx_v_pyvalue = NULL; jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_t_1; jpayne@68: PyObject *__pyx_t_2 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("get_value_no_default", 1); jpayne@68: if (__pyx_optional_args) { jpayne@68: if (__pyx_optional_args->__pyx_n > 0) { jpayne@68: __pyx_v_default_value = __pyx_optional_args->default_value; jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":135 jpayne@68: * Ignores the default value of the context variable, if any. jpayne@68: * """ jpayne@68: * cdef PyObject *value = NULL # <<<<<<<<<<<<<< jpayne@68: * PyContextVar_Get(var, default_value, &value) jpayne@68: * # value of context variable or 'default_value' jpayne@68: */ jpayne@68: __pyx_v_value = NULL; jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":136 jpayne@68: * """ jpayne@68: * cdef PyObject *value = NULL jpayne@68: * PyContextVar_Get(var, default_value, &value) # <<<<<<<<<<<<<< jpayne@68: * # value of context variable or 'default_value' jpayne@68: * pyvalue = value jpayne@68: */ jpayne@68: __pyx_t_1 = PyContextVar_Get(__pyx_v_var, ((PyObject *)__pyx_v_default_value), (&__pyx_v_value)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(2, 136, __pyx_L1_error) jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":138 jpayne@68: * PyContextVar_Get(var, default_value, &value) jpayne@68: * # value of context variable or 'default_value' jpayne@68: * pyvalue = value # <<<<<<<<<<<<<< jpayne@68: * Py_XDECREF(value) # PyContextVar_Get() returned an owned reference as 'PyObject*' jpayne@68: * return pyvalue jpayne@68: */ jpayne@68: __pyx_t_2 = ((PyObject *)__pyx_v_value); jpayne@68: __Pyx_INCREF(__pyx_t_2); jpayne@68: __pyx_v_pyvalue = __pyx_t_2; jpayne@68: __pyx_t_2 = 0; jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":139 jpayne@68: * # value of context variable or 'default_value' jpayne@68: * pyvalue = value jpayne@68: * Py_XDECREF(value) # PyContextVar_Get() returned an owned reference as 'PyObject*' # <<<<<<<<<<<<<< jpayne@68: * return pyvalue jpayne@68: */ jpayne@68: Py_XDECREF(__pyx_v_value); jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":140 jpayne@68: * pyvalue = value jpayne@68: * Py_XDECREF(value) # PyContextVar_Get() returned an owned reference as 'PyObject*' jpayne@68: * return pyvalue # <<<<<<<<<<<<<< jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __Pyx_INCREF(__pyx_v_pyvalue); jpayne@68: __pyx_r = __pyx_v_pyvalue; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":129 jpayne@68: * jpayne@68: * jpayne@68: * cdef inline object get_value_no_default(var, default_value=None): # <<<<<<<<<<<<<< jpayne@68: * """Return a new reference to the value of the context variable, jpayne@68: * or the provided default value if no such value was found. jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_2); jpayne@68: __Pyx_AddTraceback("cpython.contextvars.get_value_no_default", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = 0; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XDECREF(__pyx_v_pyvalue); jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "array.pxd":104 jpayne@68: * __data_union data jpayne@68: * jpayne@68: * def __getbuffer__(self, Py_buffer* info, int flags): # <<<<<<<<<<<<<< jpayne@68: * # This implementation of getbuffer is geared towards Cython jpayne@68: * # requirements, and does not yet fulfill the PEP. jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: CYTHON_UNUSED static int __pyx_pw_7cpython_5array_5array_1__getbuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/ jpayne@68: CYTHON_UNUSED static int __pyx_pw_7cpython_5array_5array_1__getbuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) { jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: int __pyx_r; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__getbuffer__ (wrapper)", 0); jpayne@68: __pyx_kwvalues = __Pyx_KwValues_VARARGS(__pyx_args, __pyx_nargs); jpayne@68: __pyx_r = __pyx_pf_7cpython_5array_5array___getbuffer__(((arrayobject *)__pyx_v_self), ((Py_buffer *)__pyx_v_info), ((int)__pyx_v_flags)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static int __pyx_pf_7cpython_5array_5array___getbuffer__(arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info, CYTHON_UNUSED int __pyx_v_flags) { jpayne@68: PyObject *__pyx_v_item_count = NULL; jpayne@68: int __pyx_r; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: PyObject *__pyx_t_1 = NULL; jpayne@68: char *__pyx_t_2; jpayne@68: int __pyx_t_3; jpayne@68: PyObject *__pyx_t_4 = NULL; jpayne@68: Py_ssize_t __pyx_t_5; jpayne@68: int __pyx_t_6; jpayne@68: char __pyx_t_7; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: if (unlikely(__pyx_v_info == NULL)) { jpayne@68: PyErr_SetString(PyExc_BufferError, "PyObject_GetBuffer: view==NULL argument is obsolete"); jpayne@68: return -1; jpayne@68: } jpayne@68: __Pyx_RefNannySetupContext("__getbuffer__", 0); jpayne@68: __pyx_v_info->obj = Py_None; __Pyx_INCREF(Py_None); jpayne@68: __Pyx_GIVEREF(__pyx_v_info->obj); jpayne@68: jpayne@68: /* "array.pxd":109 jpayne@68: * # In particular strided access is always provided regardless jpayne@68: * # of flags jpayne@68: * item_count = Py_SIZE(self) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * info.suboffsets = NULL jpayne@68: */ jpayne@68: __pyx_t_1 = PyInt_FromSsize_t(Py_SIZE(((PyObject *)__pyx_v_self))); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 109, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __pyx_v_item_count = __pyx_t_1; jpayne@68: __pyx_t_1 = 0; jpayne@68: jpayne@68: /* "array.pxd":111 jpayne@68: * item_count = Py_SIZE(self) jpayne@68: * jpayne@68: * info.suboffsets = NULL # <<<<<<<<<<<<<< jpayne@68: * info.buf = self.data.as_chars jpayne@68: * info.readonly = 0 jpayne@68: */ jpayne@68: __pyx_v_info->suboffsets = NULL; jpayne@68: jpayne@68: /* "array.pxd":112 jpayne@68: * jpayne@68: * info.suboffsets = NULL jpayne@68: * info.buf = self.data.as_chars # <<<<<<<<<<<<<< jpayne@68: * info.readonly = 0 jpayne@68: * info.ndim = 1 jpayne@68: */ jpayne@68: __pyx_t_2 = __pyx_v_self->data.as_chars; jpayne@68: __pyx_v_info->buf = __pyx_t_2; jpayne@68: jpayne@68: /* "array.pxd":113 jpayne@68: * info.suboffsets = NULL jpayne@68: * info.buf = self.data.as_chars jpayne@68: * info.readonly = 0 # <<<<<<<<<<<<<< jpayne@68: * info.ndim = 1 jpayne@68: * info.itemsize = self.ob_descr.itemsize # e.g. sizeof(float) jpayne@68: */ jpayne@68: __pyx_v_info->readonly = 0; jpayne@68: jpayne@68: /* "array.pxd":114 jpayne@68: * info.buf = self.data.as_chars jpayne@68: * info.readonly = 0 jpayne@68: * info.ndim = 1 # <<<<<<<<<<<<<< jpayne@68: * info.itemsize = self.ob_descr.itemsize # e.g. sizeof(float) jpayne@68: * info.len = info.itemsize * item_count jpayne@68: */ jpayne@68: __pyx_v_info->ndim = 1; jpayne@68: jpayne@68: /* "array.pxd":115 jpayne@68: * info.readonly = 0 jpayne@68: * info.ndim = 1 jpayne@68: * info.itemsize = self.ob_descr.itemsize # e.g. sizeof(float) # <<<<<<<<<<<<<< jpayne@68: * info.len = info.itemsize * item_count jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_3 = __pyx_v_self->ob_descr->itemsize; jpayne@68: __pyx_v_info->itemsize = __pyx_t_3; jpayne@68: jpayne@68: /* "array.pxd":116 jpayne@68: * info.ndim = 1 jpayne@68: * info.itemsize = self.ob_descr.itemsize # e.g. sizeof(float) jpayne@68: * info.len = info.itemsize * item_count # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * info.shape = PyObject_Malloc(sizeof(Py_ssize_t) + 2) jpayne@68: */ jpayne@68: __pyx_t_1 = PyInt_FromSsize_t(__pyx_v_info->itemsize); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 116, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __pyx_t_4 = PyNumber_Multiply(__pyx_t_1, __pyx_v_item_count); if (unlikely(!__pyx_t_4)) __PYX_ERR(3, 116, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_4); jpayne@68: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@68: __pyx_t_5 = __Pyx_PyIndex_AsSsize_t(__pyx_t_4); if (unlikely((__pyx_t_5 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(3, 116, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; jpayne@68: __pyx_v_info->len = __pyx_t_5; jpayne@68: jpayne@68: /* "array.pxd":118 jpayne@68: * info.len = info.itemsize * item_count jpayne@68: * jpayne@68: * info.shape = PyObject_Malloc(sizeof(Py_ssize_t) + 2) # <<<<<<<<<<<<<< jpayne@68: * if not info.shape: jpayne@68: * raise MemoryError() jpayne@68: */ jpayne@68: __pyx_v_info->shape = ((Py_ssize_t *)PyObject_Malloc(((sizeof(Py_ssize_t)) + 2))); jpayne@68: jpayne@68: /* "array.pxd":119 jpayne@68: * jpayne@68: * info.shape = PyObject_Malloc(sizeof(Py_ssize_t) + 2) jpayne@68: * if not info.shape: # <<<<<<<<<<<<<< jpayne@68: * raise MemoryError() jpayne@68: * info.shape[0] = item_count # constant regardless of resizing jpayne@68: */ jpayne@68: __pyx_t_6 = (!(__pyx_v_info->shape != 0)); jpayne@68: if (unlikely(__pyx_t_6)) { jpayne@68: jpayne@68: /* "array.pxd":120 jpayne@68: * info.shape = PyObject_Malloc(sizeof(Py_ssize_t) + 2) jpayne@68: * if not info.shape: jpayne@68: * raise MemoryError() # <<<<<<<<<<<<<< jpayne@68: * info.shape[0] = item_count # constant regardless of resizing jpayne@68: * info.strides = &info.itemsize jpayne@68: */ jpayne@68: PyErr_NoMemory(); __PYX_ERR(3, 120, __pyx_L1_error) jpayne@68: jpayne@68: /* "array.pxd":119 jpayne@68: * jpayne@68: * info.shape = PyObject_Malloc(sizeof(Py_ssize_t) + 2) jpayne@68: * if not info.shape: # <<<<<<<<<<<<<< jpayne@68: * raise MemoryError() jpayne@68: * info.shape[0] = item_count # constant regardless of resizing jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "array.pxd":121 jpayne@68: * if not info.shape: jpayne@68: * raise MemoryError() jpayne@68: * info.shape[0] = item_count # constant regardless of resizing # <<<<<<<<<<<<<< jpayne@68: * info.strides = &info.itemsize jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_5 = __Pyx_PyIndex_AsSsize_t(__pyx_v_item_count); if (unlikely((__pyx_t_5 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(3, 121, __pyx_L1_error) jpayne@68: (__pyx_v_info->shape[0]) = __pyx_t_5; jpayne@68: jpayne@68: /* "array.pxd":122 jpayne@68: * raise MemoryError() jpayne@68: * info.shape[0] = item_count # constant regardless of resizing jpayne@68: * info.strides = &info.itemsize # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * info.format = (info.shape + 1) jpayne@68: */ jpayne@68: __pyx_v_info->strides = (&__pyx_v_info->itemsize); jpayne@68: jpayne@68: /* "array.pxd":124 jpayne@68: * info.strides = &info.itemsize jpayne@68: * jpayne@68: * info.format = (info.shape + 1) # <<<<<<<<<<<<<< jpayne@68: * info.format[0] = self.ob_descr.typecode jpayne@68: * info.format[1] = 0 jpayne@68: */ jpayne@68: __pyx_v_info->format = ((char *)(__pyx_v_info->shape + 1)); jpayne@68: jpayne@68: /* "array.pxd":125 jpayne@68: * jpayne@68: * info.format = (info.shape + 1) jpayne@68: * info.format[0] = self.ob_descr.typecode # <<<<<<<<<<<<<< jpayne@68: * info.format[1] = 0 jpayne@68: * info.obj = self jpayne@68: */ jpayne@68: __pyx_t_7 = __pyx_v_self->ob_descr->typecode; jpayne@68: (__pyx_v_info->format[0]) = __pyx_t_7; jpayne@68: jpayne@68: /* "array.pxd":126 jpayne@68: * info.format = (info.shape + 1) jpayne@68: * info.format[0] = self.ob_descr.typecode jpayne@68: * info.format[1] = 0 # <<<<<<<<<<<<<< jpayne@68: * info.obj = self jpayne@68: * jpayne@68: */ jpayne@68: (__pyx_v_info->format[1]) = 0; jpayne@68: jpayne@68: /* "array.pxd":127 jpayne@68: * info.format[0] = self.ob_descr.typecode jpayne@68: * info.format[1] = 0 jpayne@68: * info.obj = self # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def __releasebuffer__(self, Py_buffer* info): jpayne@68: */ jpayne@68: __Pyx_INCREF((PyObject *)__pyx_v_self); jpayne@68: __Pyx_GIVEREF((PyObject *)__pyx_v_self); jpayne@68: __Pyx_GOTREF(__pyx_v_info->obj); jpayne@68: __Pyx_DECREF(__pyx_v_info->obj); jpayne@68: __pyx_v_info->obj = ((PyObject *)__pyx_v_self); jpayne@68: jpayne@68: /* "array.pxd":104 jpayne@68: * __data_union data jpayne@68: * jpayne@68: * def __getbuffer__(self, Py_buffer* info, int flags): # <<<<<<<<<<<<<< jpayne@68: * # This implementation of getbuffer is geared towards Cython jpayne@68: * # requirements, and does not yet fulfill the PEP. jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_r = 0; jpayne@68: goto __pyx_L0; jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_1); jpayne@68: __Pyx_XDECREF(__pyx_t_4); jpayne@68: __Pyx_AddTraceback("cpython.array.array.__getbuffer__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = -1; jpayne@68: if (__pyx_v_info->obj != NULL) { jpayne@68: __Pyx_GOTREF(__pyx_v_info->obj); jpayne@68: __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = 0; jpayne@68: } jpayne@68: goto __pyx_L2; jpayne@68: __pyx_L0:; jpayne@68: if (__pyx_v_info->obj == Py_None) { jpayne@68: __Pyx_GOTREF(__pyx_v_info->obj); jpayne@68: __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = 0; jpayne@68: } jpayne@68: __pyx_L2:; jpayne@68: __Pyx_XDECREF(__pyx_v_item_count); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "array.pxd":129 jpayne@68: * info.obj = self jpayne@68: * jpayne@68: * def __releasebuffer__(self, Py_buffer* info): # <<<<<<<<<<<<<< jpayne@68: * PyObject_Free(info.shape) jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: CYTHON_UNUSED static void __pyx_pw_7cpython_5array_5array_3__releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info); /*proto*/ jpayne@68: CYTHON_UNUSED static void __pyx_pw_7cpython_5array_5array_3__releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info) { jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__releasebuffer__ (wrapper)", 0); jpayne@68: __pyx_kwvalues = __Pyx_KwValues_VARARGS(__pyx_args, __pyx_nargs); jpayne@68: __pyx_pf_7cpython_5array_5array_2__releasebuffer__(((arrayobject *)__pyx_v_self), ((Py_buffer *)__pyx_v_info)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: } jpayne@68: jpayne@68: static void __pyx_pf_7cpython_5array_5array_2__releasebuffer__(CYTHON_UNUSED arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info) { jpayne@68: jpayne@68: /* "array.pxd":130 jpayne@68: * jpayne@68: * def __releasebuffer__(self, Py_buffer* info): jpayne@68: * PyObject_Free(info.shape) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * array newarrayobject(PyTypeObject* type, Py_ssize_t size, arraydescr *descr) jpayne@68: */ jpayne@68: PyObject_Free(__pyx_v_info->shape); jpayne@68: jpayne@68: /* "array.pxd":129 jpayne@68: * info.obj = self jpayne@68: * jpayne@68: * def __releasebuffer__(self, Py_buffer* info): # <<<<<<<<<<<<<< jpayne@68: * PyObject_Free(info.shape) jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: } jpayne@68: jpayne@68: /* "array.pxd":141 jpayne@68: * jpayne@68: * jpayne@68: * cdef inline array clone(array template, Py_ssize_t length, bint zero): # <<<<<<<<<<<<<< jpayne@68: * """ fast creation of a new array, given a template array. jpayne@68: * type will be same as template. jpayne@68: */ jpayne@68: jpayne@68: static CYTHON_INLINE arrayobject *__pyx_f_7cpython_5array_clone(arrayobject *__pyx_v_template, Py_ssize_t __pyx_v_length, int __pyx_v_zero) { jpayne@68: arrayobject *__pyx_v_op = 0; jpayne@68: arrayobject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: PyObject *__pyx_t_1 = NULL; jpayne@68: int __pyx_t_2; jpayne@68: int __pyx_t_3; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("clone", 1); jpayne@68: jpayne@68: /* "array.pxd":145 jpayne@68: * type will be same as template. jpayne@68: * if zero is true, new array will be initialized with zeroes.""" jpayne@68: * cdef array op = newarrayobject(Py_TYPE(template), length, template.ob_descr) # <<<<<<<<<<<<<< jpayne@68: * if zero and op is not None: jpayne@68: * memset(op.data.as_chars, 0, length * op.ob_descr.itemsize) jpayne@68: */ jpayne@68: __pyx_t_1 = ((PyObject *)newarrayobject(Py_TYPE(((PyObject *)__pyx_v_template)), __pyx_v_length, __pyx_v_template->ob_descr)); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 145, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __pyx_v_op = ((arrayobject *)__pyx_t_1); jpayne@68: __pyx_t_1 = 0; jpayne@68: jpayne@68: /* "array.pxd":146 jpayne@68: * if zero is true, new array will be initialized with zeroes.""" jpayne@68: * cdef array op = newarrayobject(Py_TYPE(template), length, template.ob_descr) jpayne@68: * if zero and op is not None: # <<<<<<<<<<<<<< jpayne@68: * memset(op.data.as_chars, 0, length * op.ob_descr.itemsize) jpayne@68: * return op jpayne@68: */ jpayne@68: if (__pyx_v_zero) { jpayne@68: } else { jpayne@68: __pyx_t_2 = __pyx_v_zero; jpayne@68: goto __pyx_L4_bool_binop_done; jpayne@68: } jpayne@68: __pyx_t_3 = (((PyObject *)__pyx_v_op) != Py_None); jpayne@68: __pyx_t_2 = __pyx_t_3; jpayne@68: __pyx_L4_bool_binop_done:; jpayne@68: if (__pyx_t_2) { jpayne@68: jpayne@68: /* "array.pxd":147 jpayne@68: * cdef array op = newarrayobject(Py_TYPE(template), length, template.ob_descr) jpayne@68: * if zero and op is not None: jpayne@68: * memset(op.data.as_chars, 0, length * op.ob_descr.itemsize) # <<<<<<<<<<<<<< jpayne@68: * return op jpayne@68: * jpayne@68: */ jpayne@68: (void)(memset(__pyx_v_op->data.as_chars, 0, (__pyx_v_length * __pyx_v_op->ob_descr->itemsize))); jpayne@68: jpayne@68: /* "array.pxd":146 jpayne@68: * if zero is true, new array will be initialized with zeroes.""" jpayne@68: * cdef array op = newarrayobject(Py_TYPE(template), length, template.ob_descr) jpayne@68: * if zero and op is not None: # <<<<<<<<<<<<<< jpayne@68: * memset(op.data.as_chars, 0, length * op.ob_descr.itemsize) jpayne@68: * return op jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "array.pxd":148 jpayne@68: * if zero and op is not None: jpayne@68: * memset(op.data.as_chars, 0, length * op.ob_descr.itemsize) jpayne@68: * return op # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef inline array copy(array self): jpayne@68: */ jpayne@68: __Pyx_XDECREF((PyObject *)__pyx_r); jpayne@68: __Pyx_INCREF((PyObject *)__pyx_v_op); jpayne@68: __pyx_r = __pyx_v_op; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "array.pxd":141 jpayne@68: * jpayne@68: * jpayne@68: * cdef inline array clone(array template, Py_ssize_t length, bint zero): # <<<<<<<<<<<<<< jpayne@68: * """ fast creation of a new array, given a template array. jpayne@68: * type will be same as template. jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_1); jpayne@68: __Pyx_AddTraceback("cpython.array.clone", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = 0; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XDECREF((PyObject *)__pyx_v_op); jpayne@68: __Pyx_XGIVEREF((PyObject *)__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "array.pxd":150 jpayne@68: * return op jpayne@68: * jpayne@68: * cdef inline array copy(array self): # <<<<<<<<<<<<<< jpayne@68: * """ make a copy of an array. """ jpayne@68: * cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr) jpayne@68: */ jpayne@68: jpayne@68: static CYTHON_INLINE arrayobject *__pyx_f_7cpython_5array_copy(arrayobject *__pyx_v_self) { jpayne@68: arrayobject *__pyx_v_op = 0; jpayne@68: arrayobject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: PyObject *__pyx_t_1 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("copy", 1); jpayne@68: jpayne@68: /* "array.pxd":152 jpayne@68: * cdef inline array copy(array self): jpayne@68: * """ make a copy of an array. """ jpayne@68: * cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr) # <<<<<<<<<<<<<< jpayne@68: * memcpy(op.data.as_chars, self.data.as_chars, Py_SIZE(op) * op.ob_descr.itemsize) jpayne@68: * return op jpayne@68: */ jpayne@68: __pyx_t_1 = ((PyObject *)newarrayobject(Py_TYPE(((PyObject *)__pyx_v_self)), Py_SIZE(((PyObject *)__pyx_v_self)), __pyx_v_self->ob_descr)); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 152, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __pyx_v_op = ((arrayobject *)__pyx_t_1); jpayne@68: __pyx_t_1 = 0; jpayne@68: jpayne@68: /* "array.pxd":153 jpayne@68: * """ make a copy of an array. """ jpayne@68: * cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr) jpayne@68: * memcpy(op.data.as_chars, self.data.as_chars, Py_SIZE(op) * op.ob_descr.itemsize) # <<<<<<<<<<<<<< jpayne@68: * return op jpayne@68: * jpayne@68: */ jpayne@68: (void)(memcpy(__pyx_v_op->data.as_chars, __pyx_v_self->data.as_chars, (Py_SIZE(((PyObject *)__pyx_v_op)) * __pyx_v_op->ob_descr->itemsize))); jpayne@68: jpayne@68: /* "array.pxd":154 jpayne@68: * cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr) jpayne@68: * memcpy(op.data.as_chars, self.data.as_chars, Py_SIZE(op) * op.ob_descr.itemsize) jpayne@68: * return op # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef inline int extend_buffer(array self, char* stuff, Py_ssize_t n) except -1: jpayne@68: */ jpayne@68: __Pyx_XDECREF((PyObject *)__pyx_r); jpayne@68: __Pyx_INCREF((PyObject *)__pyx_v_op); jpayne@68: __pyx_r = __pyx_v_op; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "array.pxd":150 jpayne@68: * return op jpayne@68: * jpayne@68: * cdef inline array copy(array self): # <<<<<<<<<<<<<< jpayne@68: * """ make a copy of an array. """ jpayne@68: * cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr) jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_1); jpayne@68: __Pyx_AddTraceback("cpython.array.copy", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = 0; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XDECREF((PyObject *)__pyx_v_op); jpayne@68: __Pyx_XGIVEREF((PyObject *)__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "array.pxd":156 jpayne@68: * return op jpayne@68: * jpayne@68: * cdef inline int extend_buffer(array self, char* stuff, Py_ssize_t n) except -1: # <<<<<<<<<<<<<< jpayne@68: * """ efficient appending of new stuff of same type jpayne@68: * (e.g. of same array type) jpayne@68: */ jpayne@68: jpayne@68: static CYTHON_INLINE int __pyx_f_7cpython_5array_extend_buffer(arrayobject *__pyx_v_self, char *__pyx_v_stuff, Py_ssize_t __pyx_v_n) { jpayne@68: Py_ssize_t __pyx_v_itemsize; jpayne@68: Py_ssize_t __pyx_v_origsize; jpayne@68: int __pyx_r; jpayne@68: int __pyx_t_1; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: jpayne@68: /* "array.pxd":160 jpayne@68: * (e.g. of same array type) jpayne@68: * n: number of elements (not number of bytes!) """ jpayne@68: * cdef Py_ssize_t itemsize = self.ob_descr.itemsize # <<<<<<<<<<<<<< jpayne@68: * cdef Py_ssize_t origsize = Py_SIZE(self) jpayne@68: * resize_smart(self, origsize + n) jpayne@68: */ jpayne@68: __pyx_t_1 = __pyx_v_self->ob_descr->itemsize; jpayne@68: __pyx_v_itemsize = __pyx_t_1; jpayne@68: jpayne@68: /* "array.pxd":161 jpayne@68: * n: number of elements (not number of bytes!) """ jpayne@68: * cdef Py_ssize_t itemsize = self.ob_descr.itemsize jpayne@68: * cdef Py_ssize_t origsize = Py_SIZE(self) # <<<<<<<<<<<<<< jpayne@68: * resize_smart(self, origsize + n) jpayne@68: * memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize) jpayne@68: */ jpayne@68: __pyx_v_origsize = Py_SIZE(((PyObject *)__pyx_v_self)); jpayne@68: jpayne@68: /* "array.pxd":162 jpayne@68: * cdef Py_ssize_t itemsize = self.ob_descr.itemsize jpayne@68: * cdef Py_ssize_t origsize = Py_SIZE(self) jpayne@68: * resize_smart(self, origsize + n) # <<<<<<<<<<<<<< jpayne@68: * memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize) jpayne@68: * return 0 jpayne@68: */ jpayne@68: __pyx_t_1 = resize_smart(__pyx_v_self, (__pyx_v_origsize + __pyx_v_n)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(3, 162, __pyx_L1_error) jpayne@68: jpayne@68: /* "array.pxd":163 jpayne@68: * cdef Py_ssize_t origsize = Py_SIZE(self) jpayne@68: * resize_smart(self, origsize + n) jpayne@68: * memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize) # <<<<<<<<<<<<<< jpayne@68: * return 0 jpayne@68: * jpayne@68: */ jpayne@68: (void)(memcpy((__pyx_v_self->data.as_chars + (__pyx_v_origsize * __pyx_v_itemsize)), __pyx_v_stuff, (__pyx_v_n * __pyx_v_itemsize))); jpayne@68: jpayne@68: /* "array.pxd":164 jpayne@68: * resize_smart(self, origsize + n) jpayne@68: * memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize) jpayne@68: * return 0 # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef inline int extend(array self, array other) except -1: jpayne@68: */ jpayne@68: __pyx_r = 0; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "array.pxd":156 jpayne@68: * return op jpayne@68: * jpayne@68: * cdef inline int extend_buffer(array self, char* stuff, Py_ssize_t n) except -1: # <<<<<<<<<<<<<< jpayne@68: * """ efficient appending of new stuff of same type jpayne@68: * (e.g. of same array type) jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_AddTraceback("cpython.array.extend_buffer", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = -1; jpayne@68: __pyx_L0:; jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "array.pxd":166 jpayne@68: * return 0 jpayne@68: * jpayne@68: * cdef inline int extend(array self, array other) except -1: # <<<<<<<<<<<<<< jpayne@68: * """ extend array with data from another array; types must match. """ jpayne@68: * if self.ob_descr.typecode != other.ob_descr.typecode: jpayne@68: */ jpayne@68: jpayne@68: static CYTHON_INLINE int __pyx_f_7cpython_5array_extend(arrayobject *__pyx_v_self, arrayobject *__pyx_v_other) { jpayne@68: int __pyx_r; jpayne@68: int __pyx_t_1; jpayne@68: int __pyx_t_2; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: jpayne@68: /* "array.pxd":168 jpayne@68: * cdef inline int extend(array self, array other) except -1: jpayne@68: * """ extend array with data from another array; types must match. """ jpayne@68: * if self.ob_descr.typecode != other.ob_descr.typecode: # <<<<<<<<<<<<<< jpayne@68: * PyErr_BadArgument() jpayne@68: * return extend_buffer(self, other.data.as_chars, Py_SIZE(other)) jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_self->ob_descr->typecode != __pyx_v_other->ob_descr->typecode); jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "array.pxd":169 jpayne@68: * """ extend array with data from another array; types must match. """ jpayne@68: * if self.ob_descr.typecode != other.ob_descr.typecode: jpayne@68: * PyErr_BadArgument() # <<<<<<<<<<<<<< jpayne@68: * return extend_buffer(self, other.data.as_chars, Py_SIZE(other)) jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_2 = PyErr_BadArgument(); if (unlikely(__pyx_t_2 == ((int)0))) __PYX_ERR(3, 169, __pyx_L1_error) jpayne@68: jpayne@68: /* "array.pxd":168 jpayne@68: * cdef inline int extend(array self, array other) except -1: jpayne@68: * """ extend array with data from another array; types must match. """ jpayne@68: * if self.ob_descr.typecode != other.ob_descr.typecode: # <<<<<<<<<<<<<< jpayne@68: * PyErr_BadArgument() jpayne@68: * return extend_buffer(self, other.data.as_chars, Py_SIZE(other)) jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "array.pxd":170 jpayne@68: * if self.ob_descr.typecode != other.ob_descr.typecode: jpayne@68: * PyErr_BadArgument() jpayne@68: * return extend_buffer(self, other.data.as_chars, Py_SIZE(other)) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef inline void zero(array self) noexcept: jpayne@68: */ jpayne@68: __pyx_t_2 = __pyx_f_7cpython_5array_extend_buffer(__pyx_v_self, __pyx_v_other->data.as_chars, Py_SIZE(((PyObject *)__pyx_v_other))); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(3, 170, __pyx_L1_error) jpayne@68: __pyx_r = __pyx_t_2; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "array.pxd":166 jpayne@68: * return 0 jpayne@68: * jpayne@68: * cdef inline int extend(array self, array other) except -1: # <<<<<<<<<<<<<< jpayne@68: * """ extend array with data from another array; types must match. """ jpayne@68: * if self.ob_descr.typecode != other.ob_descr.typecode: jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_AddTraceback("cpython.array.extend", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = -1; jpayne@68: __pyx_L0:; jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "array.pxd":172 jpayne@68: * return extend_buffer(self, other.data.as_chars, Py_SIZE(other)) jpayne@68: * jpayne@68: * cdef inline void zero(array self) noexcept: # <<<<<<<<<<<<<< jpayne@68: * """ set all elements of array to zero. """ jpayne@68: * memset(self.data.as_chars, 0, Py_SIZE(self) * self.ob_descr.itemsize) jpayne@68: */ jpayne@68: jpayne@68: static CYTHON_INLINE void __pyx_f_7cpython_5array_zero(arrayobject *__pyx_v_self) { jpayne@68: jpayne@68: /* "array.pxd":174 jpayne@68: * cdef inline void zero(array self) noexcept: jpayne@68: * """ set all elements of array to zero. """ jpayne@68: * memset(self.data.as_chars, 0, Py_SIZE(self) * self.ob_descr.itemsize) # <<<<<<<<<<<<<< jpayne@68: */ jpayne@68: (void)(memset(__pyx_v_self->data.as_chars, 0, (Py_SIZE(((PyObject *)__pyx_v_self)) * __pyx_v_self->ob_descr->itemsize))); jpayne@68: jpayne@68: /* "array.pxd":172 jpayne@68: * return extend_buffer(self, other.data.as_chars, Py_SIZE(other)) jpayne@68: * jpayne@68: * cdef inline void zero(array self) noexcept: # <<<<<<<<<<<<<< jpayne@68: * """ set all elements of array to zero. """ jpayne@68: * memset(self.data.as_chars, 0, Py_SIZE(self) * self.ob_descr.itemsize) jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":37 jpayne@68: * compressed file in text mode, use the gzip.open() function. jpayne@68: * """ jpayne@68: * def __init__(self, filename, mode=None, index=None): # <<<<<<<<<<<<<< jpayne@68: * """Constructor for the BGZFile class. jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static int __pyx_pw_5pysam_8libcbgzf_7BGZFile_1__init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ jpayne@68: PyDoc_STRVAR(__pyx_doc_5pysam_8libcbgzf_7BGZFile___init__, "Constructor for the BGZFile class.\n\n The mode argument can be any of 'r', 'rb', 'a', 'ab', 'w', 'wb', 'x', or\n 'xb' depending on whether the file will be read or written. The default\n is the mode of fileobj if discernible; otherwise, the default is 'rb'.\n A mode of 'r' is equivalent to one of 'rb', and similarly for 'w' and\n 'wb', 'a' and 'ab', and 'x' and 'xb'.\n "); jpayne@68: #if CYTHON_UPDATE_DESCRIPTOR_DOC jpayne@68: struct wrapperbase __pyx_wrapperbase_5pysam_8libcbgzf_7BGZFile___init__; jpayne@68: #endif jpayne@68: static int __pyx_pw_5pysam_8libcbgzf_7BGZFile_1__init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { jpayne@68: PyObject *__pyx_v_filename = 0; jpayne@68: PyObject *__pyx_v_mode = 0; jpayne@68: PyObject *__pyx_v_index = 0; jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[3] = {0,0,0}; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: int __pyx_r; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__init__ (wrapper)", 0); jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return -1; jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_VARARGS(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_filename,&__pyx_n_s_mode,&__pyx_n_s_index,0}; jpayne@68: values[1] = __Pyx_Arg_NewRef_VARARGS(((PyObject *)Py_None)); jpayne@68: values[2] = __Pyx_Arg_NewRef_VARARGS(((PyObject *)Py_None)); jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 3: values[2] = __Pyx_Arg_VARARGS(__pyx_args, 2); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 2: values[1] = __Pyx_Arg_VARARGS(__pyx_args, 1); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 1: values[0] = __Pyx_Arg_VARARGS(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_VARARGS(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (likely((values[0] = __Pyx_GetKwValue_VARARGS(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_filename)) != 0)) { jpayne@68: (void)__Pyx_Arg_NewRef_VARARGS(values[0]); jpayne@68: kw_args--; jpayne@68: } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 37, __pyx_L3_error) jpayne@68: else goto __pyx_L5_argtuple_error; jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 1: jpayne@68: if (kw_args > 0) { jpayne@68: PyObject* value = __Pyx_GetKwValue_VARARGS(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_mode); jpayne@68: if (value) { values[1] = __Pyx_Arg_NewRef_VARARGS(value); kw_args--; } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 37, __pyx_L3_error) jpayne@68: } jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 2: jpayne@68: if (kw_args > 0) { jpayne@68: PyObject* value = __Pyx_GetKwValue_VARARGS(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_index); jpayne@68: if (value) { values[2] = __Pyx_Arg_NewRef_VARARGS(value); kw_args--; } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 37, __pyx_L3_error) jpayne@68: } jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "__init__") < 0)) __PYX_ERR(0, 37, __pyx_L3_error) jpayne@68: } jpayne@68: } else { jpayne@68: switch (__pyx_nargs) { jpayne@68: case 3: values[2] = __Pyx_Arg_VARARGS(__pyx_args, 2); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 2: values[1] = __Pyx_Arg_VARARGS(__pyx_args, 1); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 1: values[0] = __Pyx_Arg_VARARGS(__pyx_args, 0); jpayne@68: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: } jpayne@68: __pyx_v_filename = values[0]; jpayne@68: __pyx_v_mode = values[1]; jpayne@68: __pyx_v_index = values[2]; jpayne@68: } jpayne@68: goto __pyx_L6_skip; jpayne@68: __pyx_L5_argtuple_error:; jpayne@68: __Pyx_RaiseArgtupleInvalid("__init__", 0, 1, 3, __pyx_nargs); __PYX_ERR(0, 37, __pyx_L3_error) jpayne@68: __pyx_L6_skip:; jpayne@68: goto __pyx_L4_argument_unpacking_done; jpayne@68: __pyx_L3_error:; jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_VARARGS(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return -1; jpayne@68: __pyx_L4_argument_unpacking_done:; jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile___init__(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self), __pyx_v_filename, __pyx_v_mode, __pyx_v_index); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_VARARGS(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static int __pyx_pf_5pysam_8libcbgzf_7BGZFile___init__(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self, PyObject *__pyx_v_filename, PyObject *__pyx_v_mode, PyObject *__pyx_v_index) { jpayne@68: int __pyx_r; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_t_1; jpayne@68: int __pyx_t_2; jpayne@68: PyObject *__pyx_t_3 = NULL; jpayne@68: PyObject *__pyx_t_4 = NULL; jpayne@68: PyObject *__pyx_t_5 = NULL; jpayne@68: unsigned int __pyx_t_6; jpayne@68: char const *__pyx_t_7; jpayne@68: char const *__pyx_t_8; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("__init__", 0); jpayne@68: __Pyx_INCREF(__pyx_v_mode); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":46 jpayne@68: * 'wb', 'a' and 'ab', and 'x' and 'xb'. jpayne@68: * """ jpayne@68: * if mode and ('t' in mode or 'U' in mode): # <<<<<<<<<<<<<< jpayne@68: * raise ValueError("Invalid mode: {!r}".format(mode)) jpayne@68: * if not mode: jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_v_mode); if (unlikely((__pyx_t_2 < 0))) __PYX_ERR(0, 46, __pyx_L1_error) jpayne@68: if (__pyx_t_2) { jpayne@68: } else { jpayne@68: __pyx_t_1 = __pyx_t_2; jpayne@68: goto __pyx_L4_bool_binop_done; jpayne@68: } jpayne@68: __pyx_t_2 = (__Pyx_PySequence_ContainsTF(__pyx_n_u_t, __pyx_v_mode, Py_EQ)); if (unlikely((__pyx_t_2 < 0))) __PYX_ERR(0, 46, __pyx_L1_error) jpayne@68: if (!__pyx_t_2) { jpayne@68: } else { jpayne@68: __pyx_t_1 = __pyx_t_2; jpayne@68: goto __pyx_L4_bool_binop_done; jpayne@68: } jpayne@68: __pyx_t_2 = (__Pyx_PySequence_ContainsTF(__pyx_n_u_U, __pyx_v_mode, Py_EQ)); if (unlikely((__pyx_t_2 < 0))) __PYX_ERR(0, 46, __pyx_L1_error) jpayne@68: __pyx_t_1 = __pyx_t_2; jpayne@68: __pyx_L4_bool_binop_done:; jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":47 jpayne@68: * """ jpayne@68: * if mode and ('t' in mode or 'U' in mode): jpayne@68: * raise ValueError("Invalid mode: {!r}".format(mode)) # <<<<<<<<<<<<<< jpayne@68: * if not mode: jpayne@68: * mode = 'rb' jpayne@68: */ jpayne@68: __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_kp_u_Invalid_mode_r, __pyx_n_s_format); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 47, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_4); jpayne@68: __pyx_t_5 = NULL; jpayne@68: __pyx_t_6 = 0; jpayne@68: #if CYTHON_UNPACK_METHODS jpayne@68: if (likely(PyMethod_Check(__pyx_t_4))) { jpayne@68: __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_4); jpayne@68: if (likely(__pyx_t_5)) { jpayne@68: PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4); jpayne@68: __Pyx_INCREF(__pyx_t_5); jpayne@68: __Pyx_INCREF(function); jpayne@68: __Pyx_DECREF_SET(__pyx_t_4, function); jpayne@68: __pyx_t_6 = 1; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: { jpayne@68: PyObject *__pyx_callargs[2] = {__pyx_t_5, __pyx_v_mode}; jpayne@68: __pyx_t_3 = __Pyx_PyObject_FastCall(__pyx_t_4, __pyx_callargs+1-__pyx_t_6, 1+__pyx_t_6); jpayne@68: __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0; jpayne@68: if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 47, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; jpayne@68: } jpayne@68: __pyx_t_4 = __Pyx_PyObject_CallOneArg(__pyx_builtin_ValueError, __pyx_t_3); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 47, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_4); jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: __Pyx_Raise(__pyx_t_4, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; jpayne@68: __PYX_ERR(0, 47, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":46 jpayne@68: * 'wb', 'a' and 'ab', and 'x' and 'xb'. jpayne@68: * """ jpayne@68: * if mode and ('t' in mode or 'U' in mode): # <<<<<<<<<<<<<< jpayne@68: * raise ValueError("Invalid mode: {!r}".format(mode)) jpayne@68: * if not mode: jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":48 jpayne@68: * if mode and ('t' in mode or 'U' in mode): jpayne@68: * raise ValueError("Invalid mode: {!r}".format(mode)) jpayne@68: * if not mode: # <<<<<<<<<<<<<< jpayne@68: * mode = 'rb' jpayne@68: * elif mode and 'b' not in mode: jpayne@68: */ jpayne@68: __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_v_mode); if (unlikely((__pyx_t_1 < 0))) __PYX_ERR(0, 48, __pyx_L1_error) jpayne@68: __pyx_t_2 = (!__pyx_t_1); jpayne@68: if (__pyx_t_2) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":49 jpayne@68: * raise ValueError("Invalid mode: {!r}".format(mode)) jpayne@68: * if not mode: jpayne@68: * mode = 'rb' # <<<<<<<<<<<<<< jpayne@68: * elif mode and 'b' not in mode: jpayne@68: * mode += 'b' jpayne@68: */ jpayne@68: __Pyx_INCREF(__pyx_n_u_rb); jpayne@68: __Pyx_DECREF_SET(__pyx_v_mode, __pyx_n_u_rb); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":48 jpayne@68: * if mode and ('t' in mode or 'U' in mode): jpayne@68: * raise ValueError("Invalid mode: {!r}".format(mode)) jpayne@68: * if not mode: # <<<<<<<<<<<<<< jpayne@68: * mode = 'rb' jpayne@68: * elif mode and 'b' not in mode: jpayne@68: */ jpayne@68: goto __pyx_L7; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":50 jpayne@68: * if not mode: jpayne@68: * mode = 'rb' jpayne@68: * elif mode and 'b' not in mode: # <<<<<<<<<<<<<< jpayne@68: * mode += 'b' jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_v_mode); if (unlikely((__pyx_t_1 < 0))) __PYX_ERR(0, 50, __pyx_L1_error) jpayne@68: if (__pyx_t_1) { jpayne@68: } else { jpayne@68: __pyx_t_2 = __pyx_t_1; jpayne@68: goto __pyx_L8_bool_binop_done; jpayne@68: } jpayne@68: __pyx_t_1 = (__Pyx_PySequence_ContainsTF(__pyx_n_u_b, __pyx_v_mode, Py_NE)); if (unlikely((__pyx_t_1 < 0))) __PYX_ERR(0, 50, __pyx_L1_error) jpayne@68: __pyx_t_2 = __pyx_t_1; jpayne@68: __pyx_L8_bool_binop_done:; jpayne@68: if (__pyx_t_2) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":51 jpayne@68: * mode = 'rb' jpayne@68: * elif mode and 'b' not in mode: jpayne@68: * mode += 'b' # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * mode = force_bytes(mode) jpayne@68: */ jpayne@68: __pyx_t_4 = PyNumber_InPlaceAdd(__pyx_v_mode, __pyx_n_u_b); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 51, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_4); jpayne@68: __Pyx_DECREF_SET(__pyx_v_mode, __pyx_t_4); jpayne@68: __pyx_t_4 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":50 jpayne@68: * if not mode: jpayne@68: * mode = 'rb' jpayne@68: * elif mode and 'b' not in mode: # <<<<<<<<<<<<<< jpayne@68: * mode += 'b' jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: __pyx_L7:; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":53 jpayne@68: * mode += 'b' jpayne@68: * jpayne@68: * mode = force_bytes(mode) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * self.name = encode_filename(filename) jpayne@68: */ jpayne@68: __pyx_t_4 = __pyx_f_5pysam_9libcutils_force_bytes(__pyx_v_mode, NULL); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 53, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_4); jpayne@68: __Pyx_DECREF_SET(__pyx_v_mode, __pyx_t_4); jpayne@68: __pyx_t_4 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":55 jpayne@68: * mode = force_bytes(mode) jpayne@68: * jpayne@68: * self.name = encode_filename(filename) # <<<<<<<<<<<<<< jpayne@68: * self.index = encode_filename(index) if index is not None else None jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_4 = __pyx_f_5pysam_9libcutils_encode_filename(__pyx_v_filename); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 55, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_4); jpayne@68: __Pyx_GIVEREF(__pyx_t_4); jpayne@68: __Pyx_GOTREF(__pyx_v_self->name); jpayne@68: __Pyx_DECREF(__pyx_v_self->name); jpayne@68: __pyx_v_self->name = __pyx_t_4; jpayne@68: __pyx_t_4 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":56 jpayne@68: * jpayne@68: * self.name = encode_filename(filename) jpayne@68: * self.index = encode_filename(index) if index is not None else None # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * self.bgzf = bgzf_open(self.name, mode) jpayne@68: */ jpayne@68: __pyx_t_2 = (__pyx_v_index != Py_None); jpayne@68: if (__pyx_t_2) { jpayne@68: __pyx_t_3 = __pyx_f_5pysam_9libcutils_encode_filename(__pyx_v_index); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 56, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __pyx_t_4 = __pyx_t_3; jpayne@68: __pyx_t_3 = 0; jpayne@68: } else { jpayne@68: __Pyx_INCREF(Py_None); jpayne@68: __pyx_t_4 = Py_None; jpayne@68: } jpayne@68: __Pyx_GIVEREF(__pyx_t_4); jpayne@68: __Pyx_GOTREF(__pyx_v_self->index); jpayne@68: __Pyx_DECREF(__pyx_v_self->index); jpayne@68: __pyx_v_self->index = __pyx_t_4; jpayne@68: __pyx_t_4 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":58 jpayne@68: * self.index = encode_filename(index) if index is not None else None jpayne@68: * jpayne@68: * self.bgzf = bgzf_open(self.name, mode) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if self.bgzf.is_write and index is not None and bgzf_index_build_init(self.bgzf) < 0: jpayne@68: */ jpayne@68: __pyx_t_7 = __Pyx_PyObject_AsString(__pyx_v_self->name); if (unlikely((!__pyx_t_7) && PyErr_Occurred())) __PYX_ERR(0, 58, __pyx_L1_error) jpayne@68: __pyx_t_8 = __Pyx_PyObject_AsString(__pyx_v_mode); if (unlikely((!__pyx_t_8) && PyErr_Occurred())) __PYX_ERR(0, 58, __pyx_L1_error) jpayne@68: __pyx_v_self->bgzf = bgzf_open(__pyx_t_7, __pyx_t_8); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":60 jpayne@68: * self.bgzf = bgzf_open(self.name, mode) jpayne@68: * jpayne@68: * if self.bgzf.is_write and index is not None and bgzf_index_build_init(self.bgzf) < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error building bgzf index') jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_self->bgzf->is_write != 0); jpayne@68: if (__pyx_t_1) { jpayne@68: } else { jpayne@68: __pyx_t_2 = __pyx_t_1; jpayne@68: goto __pyx_L11_bool_binop_done; jpayne@68: } jpayne@68: __pyx_t_1 = (__pyx_v_index != Py_None); jpayne@68: if (__pyx_t_1) { jpayne@68: } else { jpayne@68: __pyx_t_2 = __pyx_t_1; jpayne@68: goto __pyx_L11_bool_binop_done; jpayne@68: } jpayne@68: __pyx_t_1 = (bgzf_index_build_init(__pyx_v_self->bgzf) < 0); jpayne@68: __pyx_t_2 = __pyx_t_1; jpayne@68: __pyx_L11_bool_binop_done:; jpayne@68: if (unlikely(__pyx_t_2)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":61 jpayne@68: * jpayne@68: * if self.bgzf.is_write and index is not None and bgzf_index_build_init(self.bgzf) < 0: jpayne@68: * raise IOError('Error building bgzf index') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def __dealloc__(self): jpayne@68: */ jpayne@68: __pyx_t_4 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_tuple_, NULL); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 61, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_4); jpayne@68: __Pyx_Raise(__pyx_t_4, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; jpayne@68: __PYX_ERR(0, 61, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":60 jpayne@68: * self.bgzf = bgzf_open(self.name, mode) jpayne@68: * jpayne@68: * if self.bgzf.is_write and index is not None and bgzf_index_build_init(self.bgzf) < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error building bgzf index') jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":37 jpayne@68: * compressed file in text mode, use the gzip.open() function. jpayne@68: * """ jpayne@68: * def __init__(self, filename, mode=None, index=None): # <<<<<<<<<<<<<< jpayne@68: * """Constructor for the BGZFile class. jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_r = 0; jpayne@68: goto __pyx_L0; jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_3); jpayne@68: __Pyx_XDECREF(__pyx_t_4); jpayne@68: __Pyx_XDECREF(__pyx_t_5); jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = -1; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XDECREF(__pyx_v_mode); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":63 jpayne@68: * raise IOError('Error building bgzf index') jpayne@68: * jpayne@68: * def __dealloc__(self): # <<<<<<<<<<<<<< jpayne@68: * self.close() jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static void __pyx_pw_5pysam_8libcbgzf_7BGZFile_3__dealloc__(PyObject *__pyx_v_self); /*proto*/ jpayne@68: static void __pyx_pw_5pysam_8libcbgzf_7BGZFile_3__dealloc__(PyObject *__pyx_v_self) { jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__dealloc__ (wrapper)", 0); jpayne@68: __pyx_kwvalues = __Pyx_KwValues_VARARGS(__pyx_args, __pyx_nargs); jpayne@68: __pyx_pf_5pysam_8libcbgzf_7BGZFile_2__dealloc__(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: } jpayne@68: jpayne@68: static void __pyx_pf_5pysam_8libcbgzf_7BGZFile_2__dealloc__(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self) { jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: PyObject *__pyx_t_1 = NULL; jpayne@68: PyObject *__pyx_t_2 = NULL; jpayne@68: PyObject *__pyx_t_3 = NULL; jpayne@68: unsigned int __pyx_t_4; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("__dealloc__", 1); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":64 jpayne@68: * jpayne@68: * def __dealloc__(self): jpayne@68: * self.close() # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def write(self, data): jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_close); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 64, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_t_3 = NULL; jpayne@68: __pyx_t_4 = 0; jpayne@68: #if CYTHON_UNPACK_METHODS jpayne@68: if (likely(PyMethod_Check(__pyx_t_2))) { jpayne@68: __pyx_t_3 = PyMethod_GET_SELF(__pyx_t_2); jpayne@68: if (likely(__pyx_t_3)) { jpayne@68: PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2); jpayne@68: __Pyx_INCREF(__pyx_t_3); jpayne@68: __Pyx_INCREF(function); jpayne@68: __Pyx_DECREF_SET(__pyx_t_2, function); jpayne@68: __pyx_t_4 = 1; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: { jpayne@68: PyObject *__pyx_callargs[2] = {__pyx_t_3, NULL}; jpayne@68: __pyx_t_1 = __Pyx_PyObject_FastCall(__pyx_t_2, __pyx_callargs+1-__pyx_t_4, 0+__pyx_t_4); jpayne@68: __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 64, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: } jpayne@68: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":63 jpayne@68: * raise IOError('Error building bgzf index') jpayne@68: * jpayne@68: * def __dealloc__(self): # <<<<<<<<<<<<<< jpayne@68: * self.close() jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: goto __pyx_L0; jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_1); jpayne@68: __Pyx_XDECREF(__pyx_t_2); jpayne@68: __Pyx_XDECREF(__pyx_t_3); jpayne@68: __Pyx_WriteUnraisable("pysam.libcbgzf.BGZFile.__dealloc__", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0); jpayne@68: __pyx_L0:; jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":66 jpayne@68: * self.close() jpayne@68: * jpayne@68: * def write(self, data): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("write() on closed BGZFile object") jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_5write(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: static PyMethodDef __pyx_mdef_5pysam_8libcbgzf_7BGZFile_5write = {"write", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_5write, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}; jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_5write(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: PyObject *__pyx_v_data = 0; jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[1] = {0}; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("write (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_data,0}; jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (likely((values[0] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_data)) != 0)) { jpayne@68: (void)__Pyx_Arg_NewRef_FASTCALL(values[0]); jpayne@68: kw_args--; jpayne@68: } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 66, __pyx_L3_error) jpayne@68: else goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "write") < 0)) __PYX_ERR(0, 66, __pyx_L3_error) jpayne@68: } jpayne@68: } else if (unlikely(__pyx_nargs != 1)) { jpayne@68: goto __pyx_L5_argtuple_error; jpayne@68: } else { jpayne@68: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: } jpayne@68: __pyx_v_data = values[0]; jpayne@68: } jpayne@68: goto __pyx_L6_skip; jpayne@68: __pyx_L5_argtuple_error:; jpayne@68: __Pyx_RaiseArgtupleInvalid("write", 1, 1, 1, __pyx_nargs); __PYX_ERR(0, 66, __pyx_L3_error) jpayne@68: __pyx_L6_skip:; jpayne@68: goto __pyx_L4_argument_unpacking_done; jpayne@68: __pyx_L3_error:; jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.write", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return NULL; jpayne@68: __pyx_L4_argument_unpacking_done:; jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_4write(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self), __pyx_v_data); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_4write(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self, PyObject *__pyx_v_data) { jpayne@68: PyObject *__pyx_v_errno = NULL; jpayne@68: PyObject *__pyx_v_length = NULL; jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_t_1; jpayne@68: PyObject *__pyx_t_2 = NULL; jpayne@68: PyObject *__pyx_t_3 = NULL; jpayne@68: Py_ssize_t __pyx_t_4; jpayne@68: int __pyx_t_5; jpayne@68: char *__pyx_t_6; jpayne@68: size_t __pyx_t_7; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("write", 0); jpayne@68: __Pyx_INCREF(__pyx_v_data); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":67 jpayne@68: * jpayne@68: * def write(self, data): jpayne@68: * if not self.bgzf: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError("write() on closed BGZFile object") jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_1 = (!(__pyx_v_self->bgzf != 0)); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":68 jpayne@68: * def write(self, data): jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("write() on closed BGZFile object") # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if not self.bgzf.is_write: jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__2, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 68, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 68, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":67 jpayne@68: * jpayne@68: * def write(self, data): jpayne@68: * if not self.bgzf: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError("write() on closed BGZFile object") jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":70 jpayne@68: * raise ValueError("write() on closed BGZFile object") jpayne@68: * jpayne@68: * if not self.bgzf.is_write: # <<<<<<<<<<<<<< jpayne@68: * import errno jpayne@68: * raise IOError(errno.EBADF, "write() on read-only BGZFile object") jpayne@68: */ jpayne@68: __pyx_t_1 = (!(__pyx_v_self->bgzf->is_write != 0)); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":71 jpayne@68: * jpayne@68: * if not self.bgzf.is_write: jpayne@68: * import errno # <<<<<<<<<<<<<< jpayne@68: * raise IOError(errno.EBADF, "write() on read-only BGZFile object") jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_ImportDottedModule(__pyx_n_s_errno, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 71, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_v_errno = __pyx_t_2; jpayne@68: __pyx_t_2 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":72 jpayne@68: * if not self.bgzf.is_write: jpayne@68: * import errno jpayne@68: * raise IOError(errno.EBADF, "write() on read-only BGZFile object") # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if isinstance(data, bytes): jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_errno, __pyx_n_s_EBADF); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 72, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_t_3 = PyTuple_New(2); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 72, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __Pyx_GIVEREF(__pyx_t_2); jpayne@68: if (__Pyx_PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_2)) __PYX_ERR(0, 72, __pyx_L1_error); jpayne@68: __Pyx_INCREF(__pyx_kp_u_write_on_read_only_BGZFile_objec); jpayne@68: __Pyx_GIVEREF(__pyx_kp_u_write_on_read_only_BGZFile_objec); jpayne@68: if (__Pyx_PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_kp_u_write_on_read_only_BGZFile_objec)) __PYX_ERR(0, 72, __pyx_L1_error); jpayne@68: __pyx_t_2 = 0; jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_t_3, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 72, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 72, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":70 jpayne@68: * raise ValueError("write() on closed BGZFile object") jpayne@68: * jpayne@68: * if not self.bgzf.is_write: # <<<<<<<<<<<<<< jpayne@68: * import errno jpayne@68: * raise IOError(errno.EBADF, "write() on read-only BGZFile object") jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":74 jpayne@68: * raise IOError(errno.EBADF, "write() on read-only BGZFile object") jpayne@68: * jpayne@68: * if isinstance(data, bytes): # <<<<<<<<<<<<<< jpayne@68: * length = len(data) jpayne@68: * else: jpayne@68: */ jpayne@68: __pyx_t_1 = PyBytes_Check(__pyx_v_data); jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":75 jpayne@68: * jpayne@68: * if isinstance(data, bytes): jpayne@68: * length = len(data) # <<<<<<<<<<<<<< jpayne@68: * else: jpayne@68: * # accept any data that supports the buffer protocol jpayne@68: */ jpayne@68: __pyx_t_4 = PyObject_Length(__pyx_v_data); if (unlikely(__pyx_t_4 == ((Py_ssize_t)-1))) __PYX_ERR(0, 75, __pyx_L1_error) jpayne@68: __pyx_t_2 = PyInt_FromSsize_t(__pyx_t_4); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 75, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_v_length = __pyx_t_2; jpayne@68: __pyx_t_2 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":74 jpayne@68: * raise IOError(errno.EBADF, "write() on read-only BGZFile object") jpayne@68: * jpayne@68: * if isinstance(data, bytes): # <<<<<<<<<<<<<< jpayne@68: * length = len(data) jpayne@68: * else: jpayne@68: */ jpayne@68: goto __pyx_L5; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":78 jpayne@68: * else: jpayne@68: * # accept any data that supports the buffer protocol jpayne@68: * data = memoryview(data) # <<<<<<<<<<<<<< jpayne@68: * length = data.nbytes jpayne@68: * jpayne@68: */ jpayne@68: /*else*/ { jpayne@68: __pyx_t_2 = PyMemoryView_FromObject(__pyx_v_data); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 78, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_DECREF_SET(__pyx_v_data, __pyx_t_2); jpayne@68: __pyx_t_2 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":79 jpayne@68: * # accept any data that supports the buffer protocol jpayne@68: * data = memoryview(data) jpayne@68: * length = data.nbytes # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if length > 0 and bgzf_write(self.bgzf, data, length) < 0: jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_data, __pyx_n_s_nbytes); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 79, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_v_length = __pyx_t_2; jpayne@68: __pyx_t_2 = 0; jpayne@68: } jpayne@68: __pyx_L5:; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":81 jpayne@68: * length = data.nbytes jpayne@68: * jpayne@68: * if length > 0 and bgzf_write(self.bgzf, data, length) < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('BGZFile write failed') jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_2 = PyObject_RichCompare(__pyx_v_length, __pyx_int_0, Py_GT); __Pyx_XGOTREF(__pyx_t_2); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 81, __pyx_L1_error) jpayne@68: __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely((__pyx_t_5 < 0))) __PYX_ERR(0, 81, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: if (__pyx_t_5) { jpayne@68: } else { jpayne@68: __pyx_t_1 = __pyx_t_5; jpayne@68: goto __pyx_L7_bool_binop_done; jpayne@68: } jpayne@68: __pyx_t_6 = __Pyx_PyObject_AsWritableString(__pyx_v_data); if (unlikely((!__pyx_t_6) && PyErr_Occurred())) __PYX_ERR(0, 81, __pyx_L1_error) jpayne@68: __pyx_t_7 = __Pyx_PyInt_As_size_t(__pyx_v_length); if (unlikely((__pyx_t_7 == (size_t)-1) && PyErr_Occurred())) __PYX_ERR(0, 81, __pyx_L1_error) jpayne@68: __pyx_t_5 = (bgzf_write(__pyx_v_self->bgzf, ((char *)__pyx_t_6), __pyx_t_7) < 0); jpayne@68: __pyx_t_1 = __pyx_t_5; jpayne@68: __pyx_L7_bool_binop_done:; jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":82 jpayne@68: * jpayne@68: * if length > 0 and bgzf_write(self.bgzf, data, length) < 0: jpayne@68: * raise IOError('BGZFile write failed') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * return length jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_tuple__4, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 82, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 82, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":81 jpayne@68: * length = data.nbytes jpayne@68: * jpayne@68: * if length > 0 and bgzf_write(self.bgzf, data, length) < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('BGZFile write failed') jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":84 jpayne@68: * raise IOError('BGZFile write failed') jpayne@68: * jpayne@68: * return length # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def read(self, size=-1): jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __Pyx_INCREF(__pyx_v_length); jpayne@68: __pyx_r = __pyx_v_length; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":66 jpayne@68: * self.close() jpayne@68: * jpayne@68: * def write(self, data): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("write() on closed BGZFile object") jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_2); jpayne@68: __Pyx_XDECREF(__pyx_t_3); jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.write", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XDECREF(__pyx_v_errno); jpayne@68: __Pyx_XDECREF(__pyx_v_length); jpayne@68: __Pyx_XDECREF(__pyx_v_data); jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":86 jpayne@68: * return length jpayne@68: * jpayne@68: * def read(self, size=-1): # <<<<<<<<<<<<<< jpayne@68: * cdef ssize_t read_size jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_7read(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: static PyMethodDef __pyx_mdef_5pysam_8libcbgzf_7BGZFile_7read = {"read", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_7read, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}; jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_7read(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: PyObject *__pyx_v_size = 0; jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[1] = {0}; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("read (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_size,0}; jpayne@68: values[0] = __Pyx_Arg_NewRef_FASTCALL(((PyObject *)__pyx_int_neg_1)); jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (kw_args > 0) { jpayne@68: PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_size); jpayne@68: if (value) { values[0] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 86, __pyx_L3_error) jpayne@68: } jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "read") < 0)) __PYX_ERR(0, 86, __pyx_L3_error) jpayne@68: } jpayne@68: } else { jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: } jpayne@68: __pyx_v_size = values[0]; jpayne@68: } jpayne@68: goto __pyx_L6_skip; jpayne@68: __pyx_L5_argtuple_error:; jpayne@68: __Pyx_RaiseArgtupleInvalid("read", 0, 0, 1, __pyx_nargs); __PYX_ERR(0, 86, __pyx_L3_error) jpayne@68: __pyx_L6_skip:; jpayne@68: goto __pyx_L4_argument_unpacking_done; jpayne@68: __pyx_L3_error:; jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.read", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return NULL; jpayne@68: __pyx_L4_argument_unpacking_done:; jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_6read(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self), __pyx_v_size); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_6read(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self, PyObject *__pyx_v_size) { jpayne@68: Py_ssize_t __pyx_v_read_size; jpayne@68: PyObject *__pyx_v_errno = NULL; jpayne@68: PyObject *__pyx_v_chunks = NULL; jpayne@68: PyObject *__pyx_v_chunk = NULL; jpayne@68: CYTHON_UNUSED PyObject *__pyx_v_cdata = NULL; jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_t_1; jpayne@68: PyObject *__pyx_t_2 = NULL; jpayne@68: PyObject *__pyx_t_3 = NULL; jpayne@68: Py_ssize_t __pyx_t_4; jpayne@68: char *__pyx_t_5; jpayne@68: size_t __pyx_t_6; jpayne@68: PyObject *__pyx_t_7 = NULL; jpayne@68: int __pyx_t_8; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("read", 1); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":89 jpayne@68: * cdef ssize_t read_size jpayne@68: * jpayne@68: * if not self.bgzf: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError("read() on closed BGZFile object") jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_1 = (!(__pyx_v_self->bgzf != 0)); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":90 jpayne@68: * jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("read() on closed BGZFile object") # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if self.bgzf.is_write: jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__5, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 90, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 90, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":89 jpayne@68: * cdef ssize_t read_size jpayne@68: * jpayne@68: * if not self.bgzf: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError("read() on closed BGZFile object") jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":92 jpayne@68: * raise ValueError("read() on closed BGZFile object") jpayne@68: * jpayne@68: * if self.bgzf.is_write: # <<<<<<<<<<<<<< jpayne@68: * import errno jpayne@68: * raise IOError(errno.EBADF, "read() on write-only BGZFile object") jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_self->bgzf->is_write != 0); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":93 jpayne@68: * jpayne@68: * if self.bgzf.is_write: jpayne@68: * import errno # <<<<<<<<<<<<<< jpayne@68: * raise IOError(errno.EBADF, "read() on write-only BGZFile object") jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_ImportDottedModule(__pyx_n_s_errno, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 93, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_v_errno = __pyx_t_2; jpayne@68: __pyx_t_2 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":94 jpayne@68: * if self.bgzf.is_write: jpayne@68: * import errno jpayne@68: * raise IOError(errno.EBADF, "read() on write-only BGZFile object") # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if size < 0: jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_errno, __pyx_n_s_EBADF); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 94, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_t_3 = PyTuple_New(2); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 94, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __Pyx_GIVEREF(__pyx_t_2); jpayne@68: if (__Pyx_PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_2)) __PYX_ERR(0, 94, __pyx_L1_error); jpayne@68: __Pyx_INCREF(__pyx_kp_u_read_on_write_only_BGZFile_objec); jpayne@68: __Pyx_GIVEREF(__pyx_kp_u_read_on_write_only_BGZFile_objec); jpayne@68: if (__Pyx_PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_kp_u_read_on_write_only_BGZFile_objec)) __PYX_ERR(0, 94, __pyx_L1_error); jpayne@68: __pyx_t_2 = 0; jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_t_3, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 94, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 94, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":92 jpayne@68: * raise ValueError("read() on closed BGZFile object") jpayne@68: * jpayne@68: * if self.bgzf.is_write: # <<<<<<<<<<<<<< jpayne@68: * import errno jpayne@68: * raise IOError(errno.EBADF, "read() on write-only BGZFile object") jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":96 jpayne@68: * raise IOError(errno.EBADF, "read() on write-only BGZFile object") jpayne@68: * jpayne@68: * if size < 0: # <<<<<<<<<<<<<< jpayne@68: * chunks = [] jpayne@68: * while 1: jpayne@68: */ jpayne@68: __pyx_t_2 = PyObject_RichCompare(__pyx_v_size, __pyx_int_0, Py_LT); __Pyx_XGOTREF(__pyx_t_2); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 96, __pyx_L1_error) jpayne@68: __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely((__pyx_t_1 < 0))) __PYX_ERR(0, 96, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":97 jpayne@68: * jpayne@68: * if size < 0: jpayne@68: * chunks = [] # <<<<<<<<<<<<<< jpayne@68: * while 1: jpayne@68: * chunk = PyBytes_FromStringAndSize(NULL, BUFFER_SIZE) jpayne@68: */ jpayne@68: __pyx_t_2 = PyList_New(0); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 97, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_v_chunks = ((PyObject*)__pyx_t_2); jpayne@68: __pyx_t_2 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":98 jpayne@68: * if size < 0: jpayne@68: * chunks = [] jpayne@68: * while 1: # <<<<<<<<<<<<<< jpayne@68: * chunk = PyBytes_FromStringAndSize(NULL, BUFFER_SIZE) jpayne@68: * cdata = chunk jpayne@68: */ jpayne@68: while (1) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":99 jpayne@68: * chunks = [] jpayne@68: * while 1: jpayne@68: * chunk = PyBytes_FromStringAndSize(NULL, BUFFER_SIZE) # <<<<<<<<<<<<<< jpayne@68: * cdata = chunk jpayne@68: * read_size = bgzf_read(self.bgzf, chunk, BUFFER_SIZE) jpayne@68: */ jpayne@68: __Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_BUFFER_SIZE); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 99, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_t_4 = __Pyx_PyIndex_AsSsize_t(__pyx_t_2); if (unlikely((__pyx_t_4 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(0, 99, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __pyx_t_2 = PyBytes_FromStringAndSize(NULL, __pyx_t_4); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 99, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_XDECREF_SET(__pyx_v_chunk, ((PyObject*)__pyx_t_2)); jpayne@68: __pyx_t_2 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":100 jpayne@68: * while 1: jpayne@68: * chunk = PyBytes_FromStringAndSize(NULL, BUFFER_SIZE) jpayne@68: * cdata = chunk # <<<<<<<<<<<<<< jpayne@68: * read_size = bgzf_read(self.bgzf, chunk, BUFFER_SIZE) jpayne@68: * if read_size < 0: jpayne@68: */ jpayne@68: __pyx_t_2 = __pyx_v_chunk; jpayne@68: __Pyx_INCREF(__pyx_t_2); jpayne@68: __Pyx_XDECREF_SET(__pyx_v_cdata, ((PyObject*)__pyx_t_2)); jpayne@68: __pyx_t_2 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":101 jpayne@68: * chunk = PyBytes_FromStringAndSize(NULL, BUFFER_SIZE) jpayne@68: * cdata = chunk jpayne@68: * read_size = bgzf_read(self.bgzf, chunk, BUFFER_SIZE) # <<<<<<<<<<<<<< jpayne@68: * if read_size < 0: jpayne@68: * raise IOError('Error reading from BGZFile') jpayne@68: */ jpayne@68: if (unlikely(__pyx_v_chunk == Py_None)) { jpayne@68: PyErr_SetString(PyExc_TypeError, "expected bytes, NoneType found"); jpayne@68: __PYX_ERR(0, 101, __pyx_L1_error) jpayne@68: } jpayne@68: __pyx_t_5 = __Pyx_PyBytes_AsWritableString(__pyx_v_chunk); if (unlikely((!__pyx_t_5) && PyErr_Occurred())) __PYX_ERR(0, 101, __pyx_L1_error) jpayne@68: __Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_BUFFER_SIZE); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 101, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_t_6 = __Pyx_PyInt_As_size_t(__pyx_t_2); if (unlikely((__pyx_t_6 == (size_t)-1) && PyErr_Occurred())) __PYX_ERR(0, 101, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __pyx_v_read_size = bgzf_read(__pyx_v_self->bgzf, ((char *)__pyx_t_5), __pyx_t_6); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":102 jpayne@68: * cdata = chunk jpayne@68: * read_size = bgzf_read(self.bgzf, chunk, BUFFER_SIZE) jpayne@68: * if read_size < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error reading from BGZFile') jpayne@68: * elif not read_size: jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_read_size < 0); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":103 jpayne@68: * read_size = bgzf_read(self.bgzf, chunk, BUFFER_SIZE) jpayne@68: * if read_size < 0: jpayne@68: * raise IOError('Error reading from BGZFile') # <<<<<<<<<<<<<< jpayne@68: * elif not read_size: jpayne@68: * break jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_tuple__6, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 103, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 103, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":102 jpayne@68: * cdata = chunk jpayne@68: * read_size = bgzf_read(self.bgzf, chunk, BUFFER_SIZE) jpayne@68: * if read_size < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error reading from BGZFile') jpayne@68: * elif not read_size: jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":104 jpayne@68: * if read_size < 0: jpayne@68: * raise IOError('Error reading from BGZFile') jpayne@68: * elif not read_size: # <<<<<<<<<<<<<< jpayne@68: * break jpayne@68: * elif read_size < BUFFER_SIZE: jpayne@68: */ jpayne@68: __pyx_t_1 = (!(__pyx_v_read_size != 0)); jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":105 jpayne@68: * raise IOError('Error reading from BGZFile') jpayne@68: * elif not read_size: jpayne@68: * break # <<<<<<<<<<<<<< jpayne@68: * elif read_size < BUFFER_SIZE: jpayne@68: * chunk = chunk[:read_size] jpayne@68: */ jpayne@68: goto __pyx_L7_break; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":104 jpayne@68: * if read_size < 0: jpayne@68: * raise IOError('Error reading from BGZFile') jpayne@68: * elif not read_size: # <<<<<<<<<<<<<< jpayne@68: * break jpayne@68: * elif read_size < BUFFER_SIZE: jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":106 jpayne@68: * elif not read_size: jpayne@68: * break jpayne@68: * elif read_size < BUFFER_SIZE: # <<<<<<<<<<<<<< jpayne@68: * chunk = chunk[:read_size] jpayne@68: * chunks.append(chunk) jpayne@68: */ jpayne@68: __pyx_t_2 = PyInt_FromSsize_t(__pyx_v_read_size); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 106, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_GetModuleGlobalName(__pyx_t_3, __pyx_n_s_BUFFER_SIZE); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 106, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __pyx_t_7 = PyObject_RichCompare(__pyx_t_2, __pyx_t_3, Py_LT); __Pyx_XGOTREF(__pyx_t_7); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 106, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_7); if (unlikely((__pyx_t_1 < 0))) __PYX_ERR(0, 106, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0; jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":107 jpayne@68: * break jpayne@68: * elif read_size < BUFFER_SIZE: jpayne@68: * chunk = chunk[:read_size] # <<<<<<<<<<<<<< jpayne@68: * chunks.append(chunk) jpayne@68: * return b''.join(chunks) jpayne@68: */ jpayne@68: if (unlikely(__pyx_v_chunk == Py_None)) { jpayne@68: PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable"); jpayne@68: __PYX_ERR(0, 107, __pyx_L1_error) jpayne@68: } jpayne@68: __pyx_t_7 = PySequence_GetSlice(__pyx_v_chunk, 0, __pyx_v_read_size); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 107, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_7); jpayne@68: __Pyx_DECREF_SET(__pyx_v_chunk, ((PyObject*)__pyx_t_7)); jpayne@68: __pyx_t_7 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":106 jpayne@68: * elif not read_size: jpayne@68: * break jpayne@68: * elif read_size < BUFFER_SIZE: # <<<<<<<<<<<<<< jpayne@68: * chunk = chunk[:read_size] jpayne@68: * chunks.append(chunk) jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":108 jpayne@68: * elif read_size < BUFFER_SIZE: jpayne@68: * chunk = chunk[:read_size] jpayne@68: * chunks.append(chunk) # <<<<<<<<<<<<<< jpayne@68: * return b''.join(chunks) jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_8 = __Pyx_PyList_Append(__pyx_v_chunks, __pyx_v_chunk); if (unlikely(__pyx_t_8 == ((int)-1))) __PYX_ERR(0, 108, __pyx_L1_error) jpayne@68: } jpayne@68: __pyx_L7_break:; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":109 jpayne@68: * chunk = chunk[:read_size] jpayne@68: * chunks.append(chunk) jpayne@68: * return b''.join(chunks) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * elif size > 0: jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __pyx_t_7 = __Pyx_PyBytes_Join(__pyx_kp_b__7, __pyx_v_chunks); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 109, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_7); jpayne@68: __pyx_r = __pyx_t_7; jpayne@68: __pyx_t_7 = 0; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":96 jpayne@68: * raise IOError(errno.EBADF, "read() on write-only BGZFile object") jpayne@68: * jpayne@68: * if size < 0: # <<<<<<<<<<<<<< jpayne@68: * chunks = [] jpayne@68: * while 1: jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":111 jpayne@68: * return b''.join(chunks) jpayne@68: * jpayne@68: * elif size > 0: # <<<<<<<<<<<<<< jpayne@68: * chunk = PyBytes_FromStringAndSize(NULL, size) jpayne@68: * read_size = bgzf_read(self.bgzf, chunk, size) jpayne@68: */ jpayne@68: __pyx_t_7 = PyObject_RichCompare(__pyx_v_size, __pyx_int_0, Py_GT); __Pyx_XGOTREF(__pyx_t_7); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 111, __pyx_L1_error) jpayne@68: __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_7); if (unlikely((__pyx_t_1 < 0))) __PYX_ERR(0, 111, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0; jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":112 jpayne@68: * jpayne@68: * elif size > 0: jpayne@68: * chunk = PyBytes_FromStringAndSize(NULL, size) # <<<<<<<<<<<<<< jpayne@68: * read_size = bgzf_read(self.bgzf, chunk, size) jpayne@68: * if read_size < 0: jpayne@68: */ jpayne@68: __pyx_t_4 = __Pyx_PyIndex_AsSsize_t(__pyx_v_size); if (unlikely((__pyx_t_4 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(0, 112, __pyx_L1_error) jpayne@68: __pyx_t_7 = PyBytes_FromStringAndSize(NULL, __pyx_t_4); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 112, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_7); jpayne@68: __pyx_v_chunk = ((PyObject*)__pyx_t_7); jpayne@68: __pyx_t_7 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":113 jpayne@68: * elif size > 0: jpayne@68: * chunk = PyBytes_FromStringAndSize(NULL, size) jpayne@68: * read_size = bgzf_read(self.bgzf, chunk, size) # <<<<<<<<<<<<<< jpayne@68: * if read_size < 0: jpayne@68: * raise IOError('Error reading from BGZFile') jpayne@68: */ jpayne@68: if (unlikely(__pyx_v_chunk == Py_None)) { jpayne@68: PyErr_SetString(PyExc_TypeError, "expected bytes, NoneType found"); jpayne@68: __PYX_ERR(0, 113, __pyx_L1_error) jpayne@68: } jpayne@68: __pyx_t_5 = __Pyx_PyBytes_AsWritableString(__pyx_v_chunk); if (unlikely((!__pyx_t_5) && PyErr_Occurred())) __PYX_ERR(0, 113, __pyx_L1_error) jpayne@68: __pyx_t_6 = __Pyx_PyInt_As_size_t(__pyx_v_size); if (unlikely((__pyx_t_6 == (size_t)-1) && PyErr_Occurred())) __PYX_ERR(0, 113, __pyx_L1_error) jpayne@68: __pyx_v_read_size = bgzf_read(__pyx_v_self->bgzf, ((char *)__pyx_t_5), __pyx_t_6); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":114 jpayne@68: * chunk = PyBytes_FromStringAndSize(NULL, size) jpayne@68: * read_size = bgzf_read(self.bgzf, chunk, size) jpayne@68: * if read_size < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error reading from BGZFile') jpayne@68: * elif read_size < size: jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_read_size < 0); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":115 jpayne@68: * read_size = bgzf_read(self.bgzf, chunk, size) jpayne@68: * if read_size < 0: jpayne@68: * raise IOError('Error reading from BGZFile') # <<<<<<<<<<<<<< jpayne@68: * elif read_size < size: jpayne@68: * chunk = chunk[:read_size] jpayne@68: */ jpayne@68: __pyx_t_7 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_tuple__6, NULL); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 115, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_7); jpayne@68: __Pyx_Raise(__pyx_t_7, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0; jpayne@68: __PYX_ERR(0, 115, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":114 jpayne@68: * chunk = PyBytes_FromStringAndSize(NULL, size) jpayne@68: * read_size = bgzf_read(self.bgzf, chunk, size) jpayne@68: * if read_size < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error reading from BGZFile') jpayne@68: * elif read_size < size: jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":116 jpayne@68: * if read_size < 0: jpayne@68: * raise IOError('Error reading from BGZFile') jpayne@68: * elif read_size < size: # <<<<<<<<<<<<<< jpayne@68: * chunk = chunk[:read_size] jpayne@68: * return chunk jpayne@68: */ jpayne@68: __pyx_t_7 = PyInt_FromSsize_t(__pyx_v_read_size); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 116, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_7); jpayne@68: __pyx_t_3 = PyObject_RichCompare(__pyx_t_7, __pyx_v_size, Py_LT); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 116, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0; jpayne@68: __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely((__pyx_t_1 < 0))) __PYX_ERR(0, 116, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":117 jpayne@68: * raise IOError('Error reading from BGZFile') jpayne@68: * elif read_size < size: jpayne@68: * chunk = chunk[:read_size] # <<<<<<<<<<<<<< jpayne@68: * return chunk jpayne@68: * else: jpayne@68: */ jpayne@68: if (unlikely(__pyx_v_chunk == Py_None)) { jpayne@68: PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable"); jpayne@68: __PYX_ERR(0, 117, __pyx_L1_error) jpayne@68: } jpayne@68: __pyx_t_3 = PySequence_GetSlice(__pyx_v_chunk, 0, __pyx_v_read_size); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 117, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __Pyx_DECREF_SET(__pyx_v_chunk, ((PyObject*)__pyx_t_3)); jpayne@68: __pyx_t_3 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":116 jpayne@68: * if read_size < 0: jpayne@68: * raise IOError('Error reading from BGZFile') jpayne@68: * elif read_size < size: # <<<<<<<<<<<<<< jpayne@68: * chunk = chunk[:read_size] jpayne@68: * return chunk jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":118 jpayne@68: * elif read_size < size: jpayne@68: * chunk = chunk[:read_size] jpayne@68: * return chunk # <<<<<<<<<<<<<< jpayne@68: * else: jpayne@68: * return b'' jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __Pyx_INCREF(__pyx_v_chunk); jpayne@68: __pyx_r = __pyx_v_chunk; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":111 jpayne@68: * return b''.join(chunks) jpayne@68: * jpayne@68: * elif size > 0: # <<<<<<<<<<<<<< jpayne@68: * chunk = PyBytes_FromStringAndSize(NULL, size) jpayne@68: * read_size = bgzf_read(self.bgzf, chunk, size) jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":120 jpayne@68: * return chunk jpayne@68: * else: jpayne@68: * return b'' # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * @property jpayne@68: */ jpayne@68: /*else*/ { jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __Pyx_INCREF(__pyx_kp_b__7); jpayne@68: __pyx_r = __pyx_kp_b__7; jpayne@68: goto __pyx_L0; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":86 jpayne@68: * return length jpayne@68: * jpayne@68: * def read(self, size=-1): # <<<<<<<<<<<<<< jpayne@68: * cdef ssize_t read_size jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_2); jpayne@68: __Pyx_XDECREF(__pyx_t_3); jpayne@68: __Pyx_XDECREF(__pyx_t_7); jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.read", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XDECREF(__pyx_v_errno); jpayne@68: __Pyx_XDECREF(__pyx_v_chunks); jpayne@68: __Pyx_XDECREF(__pyx_v_chunk); jpayne@68: __Pyx_XDECREF(__pyx_v_cdata); jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":122 jpayne@68: * return b'' jpayne@68: * jpayne@68: * @property # <<<<<<<<<<<<<< jpayne@68: * def closed(self): jpayne@68: * return self.bgzf == NULL jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_6closed_1__get__(PyObject *__pyx_v_self); /*proto*/ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_6closed_1__get__(PyObject *__pyx_v_self) { jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__get__ (wrapper)", 0); jpayne@68: __pyx_kwvalues = __Pyx_KwValues_VARARGS(__pyx_args, __pyx_nargs); jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_6closed___get__(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_6closed___get__(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: PyObject *__pyx_t_1 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("__get__", 1); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":124 jpayne@68: * @property jpayne@68: * def closed(self): jpayne@68: * return self.bgzf == NULL # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def close(self): jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __pyx_t_1 = __Pyx_PyBool_FromLong((__pyx_v_self->bgzf == NULL)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 124, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __pyx_r = __pyx_t_1; jpayne@68: __pyx_t_1 = 0; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":122 jpayne@68: * return b'' jpayne@68: * jpayne@68: * @property # <<<<<<<<<<<<<< jpayne@68: * def closed(self): jpayne@68: * return self.bgzf == NULL jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_1); jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.closed.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":126 jpayne@68: * return self.bgzf == NULL jpayne@68: * jpayne@68: * def close(self): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * return jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_9close(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: static PyMethodDef __pyx_mdef_5pysam_8libcbgzf_7BGZFile_9close = {"close", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_9close, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}; jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_9close(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("close (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: if (unlikely(__pyx_nargs > 0)) { jpayne@68: __Pyx_RaiseArgtupleInvalid("close", 1, 0, 0, __pyx_nargs); return NULL;} jpayne@68: if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "close", 0))) return NULL; jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_8close(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_8close(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self) { jpayne@68: PyObject *__pyx_v_ret = 0; jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_t_1; jpayne@68: int __pyx_t_2; jpayne@68: PyObject *__pyx_t_3 = NULL; jpayne@68: char const *__pyx_t_4; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("close", 1); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":127 jpayne@68: * jpayne@68: * def close(self): jpayne@68: * if not self.bgzf: # <<<<<<<<<<<<<< jpayne@68: * return jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_1 = (!(__pyx_v_self->bgzf != 0)); jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":128 jpayne@68: * def close(self): jpayne@68: * if not self.bgzf: jpayne@68: * return # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if self.bgzf.is_write and bgzf_flush(self.bgzf) < 0: jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __pyx_r = Py_None; __Pyx_INCREF(Py_None); jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":127 jpayne@68: * jpayne@68: * def close(self): jpayne@68: * if not self.bgzf: # <<<<<<<<<<<<<< jpayne@68: * return jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":130 jpayne@68: * return jpayne@68: * jpayne@68: * if self.bgzf.is_write and bgzf_flush(self.bgzf) < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error flushing BGZFile object') jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_2 = (__pyx_v_self->bgzf->is_write != 0); jpayne@68: if (__pyx_t_2) { jpayne@68: } else { jpayne@68: __pyx_t_1 = __pyx_t_2; jpayne@68: goto __pyx_L5_bool_binop_done; jpayne@68: } jpayne@68: __pyx_t_2 = (bgzf_flush(__pyx_v_self->bgzf) < 0); jpayne@68: __pyx_t_1 = __pyx_t_2; jpayne@68: __pyx_L5_bool_binop_done:; jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":131 jpayne@68: * jpayne@68: * if self.bgzf.is_write and bgzf_flush(self.bgzf) < 0: jpayne@68: * raise IOError('Error flushing BGZFile object') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if self.index and bgzf_index_dump(self.bgzf, self.index, NULL) < 0: jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_tuple__8, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 131, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __Pyx_Raise(__pyx_t_3, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: __PYX_ERR(0, 131, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":130 jpayne@68: * return jpayne@68: * jpayne@68: * if self.bgzf.is_write and bgzf_flush(self.bgzf) < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error flushing BGZFile object') jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":133 jpayne@68: * raise IOError('Error flushing BGZFile object') jpayne@68: * jpayne@68: * if self.index and bgzf_index_dump(self.bgzf, self.index, NULL) < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Cannot write index') jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_v_self->index); if (unlikely((__pyx_t_2 < 0))) __PYX_ERR(0, 133, __pyx_L1_error) jpayne@68: if (__pyx_t_2) { jpayne@68: } else { jpayne@68: __pyx_t_1 = __pyx_t_2; jpayne@68: goto __pyx_L8_bool_binop_done; jpayne@68: } jpayne@68: __pyx_t_4 = __Pyx_PyObject_AsString(__pyx_v_self->index); if (unlikely((!__pyx_t_4) && PyErr_Occurred())) __PYX_ERR(0, 133, __pyx_L1_error) jpayne@68: __pyx_t_2 = (bgzf_index_dump(__pyx_v_self->bgzf, __pyx_t_4, NULL) < 0); jpayne@68: __pyx_t_1 = __pyx_t_2; jpayne@68: __pyx_L8_bool_binop_done:; jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":134 jpayne@68: * jpayne@68: * if self.index and bgzf_index_dump(self.bgzf, self.index, NULL) < 0: jpayne@68: * raise IOError('Cannot write index') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef ret = bgzf_close(self.bgzf) jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_tuple__9, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 134, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __Pyx_Raise(__pyx_t_3, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: __PYX_ERR(0, 134, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":133 jpayne@68: * raise IOError('Error flushing BGZFile object') jpayne@68: * jpayne@68: * if self.index and bgzf_index_dump(self.bgzf, self.index, NULL) < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Cannot write index') jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":136 jpayne@68: * raise IOError('Cannot write index') jpayne@68: * jpayne@68: * cdef ret = bgzf_close(self.bgzf) # <<<<<<<<<<<<<< jpayne@68: * self.bgzf = NULL jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_PyInt_From_int(bgzf_close(__pyx_v_self->bgzf)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 136, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __pyx_v_ret = __pyx_t_3; jpayne@68: __pyx_t_3 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":137 jpayne@68: * jpayne@68: * cdef ret = bgzf_close(self.bgzf) jpayne@68: * self.bgzf = NULL # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if ret < 0: jpayne@68: */ jpayne@68: __pyx_v_self->bgzf = NULL; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":139 jpayne@68: * self.bgzf = NULL jpayne@68: * jpayne@68: * if ret < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error closing BGZFile object') jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_3 = PyObject_RichCompare(__pyx_v_ret, __pyx_int_0, Py_LT); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 139, __pyx_L1_error) jpayne@68: __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely((__pyx_t_1 < 0))) __PYX_ERR(0, 139, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":140 jpayne@68: * jpayne@68: * if ret < 0: jpayne@68: * raise IOError('Error closing BGZFile object') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def __enter__(self): jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_tuple__10, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 140, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __Pyx_Raise(__pyx_t_3, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: __PYX_ERR(0, 140, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":139 jpayne@68: * self.bgzf = NULL jpayne@68: * jpayne@68: * if ret < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error closing BGZFile object') jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":126 jpayne@68: * return self.bgzf == NULL jpayne@68: * jpayne@68: * def close(self): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * return jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_r = Py_None; __Pyx_INCREF(Py_None); jpayne@68: goto __pyx_L0; jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_3); jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.close", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XDECREF(__pyx_v_ret); jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":142 jpayne@68: * raise IOError('Error closing BGZFile object') jpayne@68: * jpayne@68: * def __enter__(self): # <<<<<<<<<<<<<< jpayne@68: * return self jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_11__enter__(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: static PyMethodDef __pyx_mdef_5pysam_8libcbgzf_7BGZFile_11__enter__ = {"__enter__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_11__enter__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}; jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_11__enter__(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__enter__ (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: if (unlikely(__pyx_nargs > 0)) { jpayne@68: __Pyx_RaiseArgtupleInvalid("__enter__", 1, 0, 0, __pyx_nargs); return NULL;} jpayne@68: if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "__enter__", 0))) return NULL; jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_10__enter__(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_10__enter__(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__enter__", 1); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":143 jpayne@68: * jpayne@68: * def __enter__(self): jpayne@68: * return self # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def __exit__(self, type, value, tb): jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __Pyx_INCREF((PyObject *)__pyx_v_self); jpayne@68: __pyx_r = ((PyObject *)__pyx_v_self); jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":142 jpayne@68: * raise IOError('Error closing BGZFile object') jpayne@68: * jpayne@68: * def __enter__(self): # <<<<<<<<<<<<<< jpayne@68: * return self jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":145 jpayne@68: * return self jpayne@68: * jpayne@68: * def __exit__(self, type, value, tb): # <<<<<<<<<<<<<< jpayne@68: * self.close() jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_13__exit__(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: static PyMethodDef __pyx_mdef_5pysam_8libcbgzf_7BGZFile_13__exit__ = {"__exit__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_13__exit__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}; jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_13__exit__(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: CYTHON_UNUSED PyObject *__pyx_v_type = 0; jpayne@68: CYTHON_UNUSED PyObject *__pyx_v_value = 0; jpayne@68: CYTHON_UNUSED PyObject *__pyx_v_tb = 0; jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[3] = {0,0,0}; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__exit__ (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_type,&__pyx_n_s_value,&__pyx_n_s_tb,0}; jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 3: values[2] = __Pyx_Arg_FASTCALL(__pyx_args, 2); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 2: values[1] = __Pyx_Arg_FASTCALL(__pyx_args, 1); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (likely((values[0] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_type)) != 0)) { jpayne@68: (void)__Pyx_Arg_NewRef_FASTCALL(values[0]); jpayne@68: kw_args--; jpayne@68: } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 145, __pyx_L3_error) jpayne@68: else goto __pyx_L5_argtuple_error; jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 1: jpayne@68: if (likely((values[1] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_value)) != 0)) { jpayne@68: (void)__Pyx_Arg_NewRef_FASTCALL(values[1]); jpayne@68: kw_args--; jpayne@68: } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 145, __pyx_L3_error) jpayne@68: else { jpayne@68: __Pyx_RaiseArgtupleInvalid("__exit__", 1, 3, 3, 1); __PYX_ERR(0, 145, __pyx_L3_error) jpayne@68: } jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 2: jpayne@68: if (likely((values[2] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_tb)) != 0)) { jpayne@68: (void)__Pyx_Arg_NewRef_FASTCALL(values[2]); jpayne@68: kw_args--; jpayne@68: } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 145, __pyx_L3_error) jpayne@68: else { jpayne@68: __Pyx_RaiseArgtupleInvalid("__exit__", 1, 3, 3, 2); __PYX_ERR(0, 145, __pyx_L3_error) jpayne@68: } jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "__exit__") < 0)) __PYX_ERR(0, 145, __pyx_L3_error) jpayne@68: } jpayne@68: } else if (unlikely(__pyx_nargs != 3)) { jpayne@68: goto __pyx_L5_argtuple_error; jpayne@68: } else { jpayne@68: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: values[1] = __Pyx_Arg_FASTCALL(__pyx_args, 1); jpayne@68: values[2] = __Pyx_Arg_FASTCALL(__pyx_args, 2); jpayne@68: } jpayne@68: __pyx_v_type = values[0]; jpayne@68: __pyx_v_value = values[1]; jpayne@68: __pyx_v_tb = values[2]; jpayne@68: } jpayne@68: goto __pyx_L6_skip; jpayne@68: __pyx_L5_argtuple_error:; jpayne@68: __Pyx_RaiseArgtupleInvalid("__exit__", 1, 3, 3, __pyx_nargs); __PYX_ERR(0, 145, __pyx_L3_error) jpayne@68: __pyx_L6_skip:; jpayne@68: goto __pyx_L4_argument_unpacking_done; jpayne@68: __pyx_L3_error:; jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.__exit__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return NULL; jpayne@68: __pyx_L4_argument_unpacking_done:; jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_12__exit__(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self), __pyx_v_type, __pyx_v_value, __pyx_v_tb); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_12__exit__(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_type, CYTHON_UNUSED PyObject *__pyx_v_value, CYTHON_UNUSED PyObject *__pyx_v_tb) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: PyObject *__pyx_t_1 = NULL; jpayne@68: PyObject *__pyx_t_2 = NULL; jpayne@68: PyObject *__pyx_t_3 = NULL; jpayne@68: unsigned int __pyx_t_4; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("__exit__", 1); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":146 jpayne@68: * jpayne@68: * def __exit__(self, type, value, tb): jpayne@68: * self.close() # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def flush(self): jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_close); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 146, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_t_3 = NULL; jpayne@68: __pyx_t_4 = 0; jpayne@68: #if CYTHON_UNPACK_METHODS jpayne@68: if (likely(PyMethod_Check(__pyx_t_2))) { jpayne@68: __pyx_t_3 = PyMethod_GET_SELF(__pyx_t_2); jpayne@68: if (likely(__pyx_t_3)) { jpayne@68: PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2); jpayne@68: __Pyx_INCREF(__pyx_t_3); jpayne@68: __Pyx_INCREF(function); jpayne@68: __Pyx_DECREF_SET(__pyx_t_2, function); jpayne@68: __pyx_t_4 = 1; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: { jpayne@68: PyObject *__pyx_callargs[2] = {__pyx_t_3, NULL}; jpayne@68: __pyx_t_1 = __Pyx_PyObject_FastCall(__pyx_t_2, __pyx_callargs+1-__pyx_t_4, 0+__pyx_t_4); jpayne@68: __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 146, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: } jpayne@68: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":145 jpayne@68: * return self jpayne@68: * jpayne@68: * def __exit__(self, type, value, tb): # <<<<<<<<<<<<<< jpayne@68: * self.close() jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_r = Py_None; __Pyx_INCREF(Py_None); jpayne@68: goto __pyx_L0; jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_1); jpayne@68: __Pyx_XDECREF(__pyx_t_2); jpayne@68: __Pyx_XDECREF(__pyx_t_3); jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.__exit__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":148 jpayne@68: * self.close() jpayne@68: * jpayne@68: * def flush(self): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * return jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_15flush(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: static PyMethodDef __pyx_mdef_5pysam_8libcbgzf_7BGZFile_15flush = {"flush", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_15flush, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}; jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_15flush(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("flush (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: if (unlikely(__pyx_nargs > 0)) { jpayne@68: __Pyx_RaiseArgtupleInvalid("flush", 1, 0, 0, __pyx_nargs); return NULL;} jpayne@68: if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "flush", 0))) return NULL; jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_14flush(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_14flush(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_t_1; jpayne@68: int __pyx_t_2; jpayne@68: PyObject *__pyx_t_3 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("flush", 1); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":149 jpayne@68: * jpayne@68: * def flush(self): jpayne@68: * if not self.bgzf: # <<<<<<<<<<<<<< jpayne@68: * return jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_1 = (!(__pyx_v_self->bgzf != 0)); jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":150 jpayne@68: * def flush(self): jpayne@68: * if not self.bgzf: jpayne@68: * return # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if self.bgzf.is_write and bgzf_flush(self.bgzf) < 0: jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __pyx_r = Py_None; __Pyx_INCREF(Py_None); jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":149 jpayne@68: * jpayne@68: * def flush(self): jpayne@68: * if not self.bgzf: # <<<<<<<<<<<<<< jpayne@68: * return jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":152 jpayne@68: * return jpayne@68: * jpayne@68: * if self.bgzf.is_write and bgzf_flush(self.bgzf) < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error flushing BGZFile object') jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_2 = (__pyx_v_self->bgzf->is_write != 0); jpayne@68: if (__pyx_t_2) { jpayne@68: } else { jpayne@68: __pyx_t_1 = __pyx_t_2; jpayne@68: goto __pyx_L5_bool_binop_done; jpayne@68: } jpayne@68: __pyx_t_2 = (bgzf_flush(__pyx_v_self->bgzf) < 0); jpayne@68: __pyx_t_1 = __pyx_t_2; jpayne@68: __pyx_L5_bool_binop_done:; jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":153 jpayne@68: * jpayne@68: * if self.bgzf.is_write and bgzf_flush(self.bgzf) < 0: jpayne@68: * raise IOError('Error flushing BGZFile object') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def fileno(self): jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_tuple__8, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 153, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __Pyx_Raise(__pyx_t_3, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: __PYX_ERR(0, 153, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":152 jpayne@68: * return jpayne@68: * jpayne@68: * if self.bgzf.is_write and bgzf_flush(self.bgzf) < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error flushing BGZFile object') jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":148 jpayne@68: * self.close() jpayne@68: * jpayne@68: * def flush(self): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * return jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_r = Py_None; __Pyx_INCREF(Py_None); jpayne@68: goto __pyx_L0; jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_3); jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.flush", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":155 jpayne@68: * raise IOError('Error flushing BGZFile object') jpayne@68: * jpayne@68: * def fileno(self): # <<<<<<<<<<<<<< jpayne@68: * """Invoke the underlying file object's fileno() method. jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_17fileno(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: PyDoc_STRVAR(__pyx_doc_5pysam_8libcbgzf_7BGZFile_16fileno, "Invoke the underlying file object's fileno() method.\n\n This will raise AttributeError if the underlying file object\n doesn't support fileno().\n "); jpayne@68: static PyMethodDef __pyx_mdef_5pysam_8libcbgzf_7BGZFile_17fileno = {"fileno", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_17fileno, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_8libcbgzf_7BGZFile_16fileno}; jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_17fileno(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("fileno (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: if (unlikely(__pyx_nargs > 0)) { jpayne@68: __Pyx_RaiseArgtupleInvalid("fileno", 1, 0, 0, __pyx_nargs); return NULL;} jpayne@68: if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "fileno", 0))) return NULL; jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_16fileno(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_16fileno(CYTHON_UNUSED struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: PyObject *__pyx_t_1 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("fileno", 1); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":161 jpayne@68: * doesn't support fileno(). jpayne@68: * """ jpayne@68: * raise AttributeError('fileno') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def rewind(self): jpayne@68: */ jpayne@68: __pyx_t_1 = __Pyx_PyObject_Call(__pyx_builtin_AttributeError, __pyx_tuple__11, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 161, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __Pyx_Raise(__pyx_t_1, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@68: __PYX_ERR(0, 161, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":155 jpayne@68: * raise IOError('Error flushing BGZFile object') jpayne@68: * jpayne@68: * def fileno(self): # <<<<<<<<<<<<<< jpayne@68: * """Invoke the underlying file object's fileno() method. jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_1); jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.fileno", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":163 jpayne@68: * raise AttributeError('fileno') jpayne@68: * jpayne@68: * def rewind(self): # <<<<<<<<<<<<<< jpayne@68: * '''Return the uncompressed stream file position indicator to the jpayne@68: * beginning of the file''' jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_19rewind(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: PyDoc_STRVAR(__pyx_doc_5pysam_8libcbgzf_7BGZFile_18rewind, "Return the uncompressed stream file position indicator to the\n beginning of the file"); jpayne@68: static PyMethodDef __pyx_mdef_5pysam_8libcbgzf_7BGZFile_19rewind = {"rewind", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_19rewind, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_8libcbgzf_7BGZFile_18rewind}; jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_19rewind(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("rewind (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: if (unlikely(__pyx_nargs > 0)) { jpayne@68: __Pyx_RaiseArgtupleInvalid("rewind", 1, 0, 0, __pyx_nargs); return NULL;} jpayne@68: if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "rewind", 0))) return NULL; jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_18rewind(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_18rewind(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_t_1; jpayne@68: PyObject *__pyx_t_2 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("rewind", 1); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":166 jpayne@68: * '''Return the uncompressed stream file position indicator to the jpayne@68: * beginning of the file''' jpayne@68: * if not self.bgzf: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError("rewind() on closed BGZFile object") jpayne@68: * if not self.bgzf.is_write: jpayne@68: */ jpayne@68: __pyx_t_1 = (!(__pyx_v_self->bgzf != 0)); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":167 jpayne@68: * beginning of the file''' jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("rewind() on closed BGZFile object") # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf.is_write: jpayne@68: * raise IOError("Can't rewind in write mode") jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__12, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 167, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 167, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":166 jpayne@68: * '''Return the uncompressed stream file position indicator to the jpayne@68: * beginning of the file''' jpayne@68: * if not self.bgzf: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError("rewind() on closed BGZFile object") jpayne@68: * if not self.bgzf.is_write: jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":168 jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("rewind() on closed BGZFile object") jpayne@68: * if not self.bgzf.is_write: # <<<<<<<<<<<<<< jpayne@68: * raise IOError("Can't rewind in write mode") jpayne@68: * if bgzf_seek(self.bgzf, 0, SEEK_SET) < 0: jpayne@68: */ jpayne@68: __pyx_t_1 = (!(__pyx_v_self->bgzf->is_write != 0)); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":169 jpayne@68: * raise ValueError("rewind() on closed BGZFile object") jpayne@68: * if not self.bgzf.is_write: jpayne@68: * raise IOError("Can't rewind in write mode") # <<<<<<<<<<<<<< jpayne@68: * if bgzf_seek(self.bgzf, 0, SEEK_SET) < 0: jpayne@68: * raise IOError('Error seeking BGZFFile object') jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_tuple__13, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 169, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 169, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":168 jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("rewind() on closed BGZFile object") jpayne@68: * if not self.bgzf.is_write: # <<<<<<<<<<<<<< jpayne@68: * raise IOError("Can't rewind in write mode") jpayne@68: * if bgzf_seek(self.bgzf, 0, SEEK_SET) < 0: jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":170 jpayne@68: * if not self.bgzf.is_write: jpayne@68: * raise IOError("Can't rewind in write mode") jpayne@68: * if bgzf_seek(self.bgzf, 0, SEEK_SET) < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error seeking BGZFFile object') jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_1 = (bgzf_seek(__pyx_v_self->bgzf, 0, SEEK_SET) < 0); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":171 jpayne@68: * raise IOError("Can't rewind in write mode") jpayne@68: * if bgzf_seek(self.bgzf, 0, SEEK_SET) < 0: jpayne@68: * raise IOError('Error seeking BGZFFile object') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def readable(self): jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_tuple__14, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 171, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 171, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":170 jpayne@68: * if not self.bgzf.is_write: jpayne@68: * raise IOError("Can't rewind in write mode") jpayne@68: * if bgzf_seek(self.bgzf, 0, SEEK_SET) < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error seeking BGZFFile object') jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":163 jpayne@68: * raise AttributeError('fileno') jpayne@68: * jpayne@68: * def rewind(self): # <<<<<<<<<<<<<< jpayne@68: * '''Return the uncompressed stream file position indicator to the jpayne@68: * beginning of the file''' jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_r = Py_None; __Pyx_INCREF(Py_None); jpayne@68: goto __pyx_L0; jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_2); jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.rewind", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":173 jpayne@68: * raise IOError('Error seeking BGZFFile object') jpayne@68: * jpayne@68: * def readable(self): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("readable() on closed BGZFile object") jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_21readable(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: static PyMethodDef __pyx_mdef_5pysam_8libcbgzf_7BGZFile_21readable = {"readable", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_21readable, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}; jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_21readable(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("readable (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: if (unlikely(__pyx_nargs > 0)) { jpayne@68: __Pyx_RaiseArgtupleInvalid("readable", 1, 0, 0, __pyx_nargs); return NULL;} jpayne@68: if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "readable", 0))) return NULL; jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_20readable(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_20readable(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_t_1; jpayne@68: PyObject *__pyx_t_2 = NULL; jpayne@68: PyObject *__pyx_t_3 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("readable", 1); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":174 jpayne@68: * jpayne@68: * def readable(self): jpayne@68: * if not self.bgzf: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError("readable() on closed BGZFile object") jpayne@68: * return self.bgzf != NULL and not self.bgzf.is_write jpayne@68: */ jpayne@68: __pyx_t_1 = (!(__pyx_v_self->bgzf != 0)); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":175 jpayne@68: * def readable(self): jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("readable() on closed BGZFile object") # <<<<<<<<<<<<<< jpayne@68: * return self.bgzf != NULL and not self.bgzf.is_write jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__15, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 175, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 175, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":174 jpayne@68: * jpayne@68: * def readable(self): jpayne@68: * if not self.bgzf: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError("readable() on closed BGZFile object") jpayne@68: * return self.bgzf != NULL and not self.bgzf.is_write jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":176 jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("readable() on closed BGZFile object") jpayne@68: * return self.bgzf != NULL and not self.bgzf.is_write # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def writable(self): jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __pyx_t_1 = (__pyx_v_self->bgzf != NULL); jpayne@68: if (__pyx_t_1) { jpayne@68: } else { jpayne@68: __pyx_t_3 = __Pyx_PyBool_FromLong(__pyx_t_1); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 176, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __pyx_t_2 = __pyx_t_3; jpayne@68: __pyx_t_3 = 0; jpayne@68: goto __pyx_L4_bool_binop_done; jpayne@68: } jpayne@68: __pyx_t_1 = (!(__pyx_v_self->bgzf->is_write != 0)); jpayne@68: __pyx_t_3 = __Pyx_PyBool_FromLong(__pyx_t_1); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 176, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __pyx_t_2 = __pyx_t_3; jpayne@68: __pyx_t_3 = 0; jpayne@68: __pyx_L4_bool_binop_done:; jpayne@68: __pyx_r = __pyx_t_2; jpayne@68: __pyx_t_2 = 0; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":173 jpayne@68: * raise IOError('Error seeking BGZFFile object') jpayne@68: * jpayne@68: * def readable(self): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("readable() on closed BGZFile object") jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_2); jpayne@68: __Pyx_XDECREF(__pyx_t_3); jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.readable", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":178 jpayne@68: * return self.bgzf != NULL and not self.bgzf.is_write jpayne@68: * jpayne@68: * def writable(self): # <<<<<<<<<<<<<< jpayne@68: * return self.bgzf != NULL and self.bgzf.is_write jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_23writable(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: static PyMethodDef __pyx_mdef_5pysam_8libcbgzf_7BGZFile_23writable = {"writable", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_23writable, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}; jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_23writable(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("writable (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: if (unlikely(__pyx_nargs > 0)) { jpayne@68: __Pyx_RaiseArgtupleInvalid("writable", 1, 0, 0, __pyx_nargs); return NULL;} jpayne@68: if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "writable", 0))) return NULL; jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_22writable(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_22writable(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: PyObject *__pyx_t_1 = NULL; jpayne@68: int __pyx_t_2; jpayne@68: PyObject *__pyx_t_3 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("writable", 1); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":179 jpayne@68: * jpayne@68: * def writable(self): jpayne@68: * return self.bgzf != NULL and self.bgzf.is_write # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def seekable(self): jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __pyx_t_2 = (__pyx_v_self->bgzf != NULL); jpayne@68: if (__pyx_t_2) { jpayne@68: } else { jpayne@68: __pyx_t_3 = __Pyx_PyBool_FromLong(__pyx_t_2); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 179, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __pyx_t_1 = __pyx_t_3; jpayne@68: __pyx_t_3 = 0; jpayne@68: goto __pyx_L3_bool_binop_done; jpayne@68: } jpayne@68: __pyx_t_3 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->bgzf->is_write); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 179, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __pyx_t_1 = __pyx_t_3; jpayne@68: __pyx_t_3 = 0; jpayne@68: __pyx_L3_bool_binop_done:; jpayne@68: __pyx_r = __pyx_t_1; jpayne@68: __pyx_t_1 = 0; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":178 jpayne@68: * return self.bgzf != NULL and not self.bgzf.is_write jpayne@68: * jpayne@68: * def writable(self): # <<<<<<<<<<<<<< jpayne@68: * return self.bgzf != NULL and self.bgzf.is_write jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_1); jpayne@68: __Pyx_XDECREF(__pyx_t_3); jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.writable", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":181 jpayne@68: * return self.bgzf != NULL and self.bgzf.is_write jpayne@68: * jpayne@68: * def seekable(self): # <<<<<<<<<<<<<< jpayne@68: * return True jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_25seekable(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: static PyMethodDef __pyx_mdef_5pysam_8libcbgzf_7BGZFile_25seekable = {"seekable", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_25seekable, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}; jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_25seekable(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("seekable (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: if (unlikely(__pyx_nargs > 0)) { jpayne@68: __Pyx_RaiseArgtupleInvalid("seekable", 1, 0, 0, __pyx_nargs); return NULL;} jpayne@68: if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "seekable", 0))) return NULL; jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_24seekable(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_24seekable(CYTHON_UNUSED struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("seekable", 1); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":182 jpayne@68: * jpayne@68: * def seekable(self): jpayne@68: * return True # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def tell(self): jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __Pyx_INCREF(Py_True); jpayne@68: __pyx_r = Py_True; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":181 jpayne@68: * return self.bgzf != NULL and self.bgzf.is_write jpayne@68: * jpayne@68: * def seekable(self): # <<<<<<<<<<<<<< jpayne@68: * return True jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":184 jpayne@68: * return True jpayne@68: * jpayne@68: * def tell(self): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_27tell(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: static PyMethodDef __pyx_mdef_5pysam_8libcbgzf_7BGZFile_27tell = {"tell", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_27tell, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}; jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_27tell(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("tell (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: if (unlikely(__pyx_nargs > 0)) { jpayne@68: __Pyx_RaiseArgtupleInvalid("tell", 1, 0, 0, __pyx_nargs); return NULL;} jpayne@68: if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "tell", 0))) return NULL; jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_26tell(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_26tell(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self) { jpayne@68: int64_t __pyx_v_off; jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_t_1; jpayne@68: PyObject *__pyx_t_2 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("tell", 1); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":185 jpayne@68: * jpayne@68: * def tell(self): jpayne@68: * if not self.bgzf: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: * cdef int64_t off = bgzf_tell(self.bgzf) jpayne@68: */ jpayne@68: __pyx_t_1 = (!(__pyx_v_self->bgzf != 0)); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":186 jpayne@68: * def tell(self): jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("seek() on closed BGZFile object") # <<<<<<<<<<<<<< jpayne@68: * cdef int64_t off = bgzf_tell(self.bgzf) jpayne@68: * if off < 0: jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__16, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 186, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 186, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":185 jpayne@68: * jpayne@68: * def tell(self): jpayne@68: * if not self.bgzf: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: * cdef int64_t off = bgzf_tell(self.bgzf) jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":187 jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: * cdef int64_t off = bgzf_tell(self.bgzf) # <<<<<<<<<<<<<< jpayne@68: * if off < 0: jpayne@68: * raise IOError('Error in tell on BGZFFile object') jpayne@68: */ jpayne@68: __pyx_v_off = bgzf_tell(__pyx_v_self->bgzf); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":188 jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: * cdef int64_t off = bgzf_tell(self.bgzf) jpayne@68: * if off < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error in tell on BGZFFile object') jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_off < 0); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":189 jpayne@68: * cdef int64_t off = bgzf_tell(self.bgzf) jpayne@68: * if off < 0: jpayne@68: * raise IOError('Error in tell on BGZFFile object') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * return off jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_tuple__17, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 189, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 189, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":188 jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: * cdef int64_t off = bgzf_tell(self.bgzf) jpayne@68: * if off < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error in tell on BGZFFile object') jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":191 jpayne@68: * raise IOError('Error in tell on BGZFFile object') jpayne@68: * jpayne@68: * return off # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def seek(self, offset, whence=io.SEEK_SET): jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __pyx_t_2 = __Pyx_PyInt_From_int64_t(__pyx_v_off); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 191, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_r = __pyx_t_2; jpayne@68: __pyx_t_2 = 0; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":184 jpayne@68: * return True jpayne@68: * jpayne@68: * def tell(self): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_2); jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.tell", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":193 jpayne@68: * return off jpayne@68: * jpayne@68: * def seek(self, offset, whence=io.SEEK_SET): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_29seek(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: static PyMethodDef __pyx_mdef_5pysam_8libcbgzf_7BGZFile_29seek = {"seek", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_29seek, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}; jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_29seek(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: PyObject *__pyx_v_offset = 0; jpayne@68: PyObject *__pyx_v_whence = 0; jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[2] = {0,0}; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("seek (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_offset,&__pyx_n_s_whence,0}; jpayne@68: values[1] = __Pyx_Arg_NewRef_FASTCALL(__pyx_k__18); jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 2: values[1] = __Pyx_Arg_FASTCALL(__pyx_args, 1); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (likely((values[0] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_offset)) != 0)) { jpayne@68: (void)__Pyx_Arg_NewRef_FASTCALL(values[0]); jpayne@68: kw_args--; jpayne@68: } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 193, __pyx_L3_error) jpayne@68: else goto __pyx_L5_argtuple_error; jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 1: jpayne@68: if (kw_args > 0) { jpayne@68: PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_whence); jpayne@68: if (value) { values[1] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 193, __pyx_L3_error) jpayne@68: } jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "seek") < 0)) __PYX_ERR(0, 193, __pyx_L3_error) jpayne@68: } jpayne@68: } else { jpayne@68: switch (__pyx_nargs) { jpayne@68: case 2: values[1] = __Pyx_Arg_FASTCALL(__pyx_args, 1); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: } jpayne@68: __pyx_v_offset = values[0]; jpayne@68: __pyx_v_whence = values[1]; jpayne@68: } jpayne@68: goto __pyx_L6_skip; jpayne@68: __pyx_L5_argtuple_error:; jpayne@68: __Pyx_RaiseArgtupleInvalid("seek", 0, 1, 2, __pyx_nargs); __PYX_ERR(0, 193, __pyx_L3_error) jpayne@68: __pyx_L6_skip:; jpayne@68: goto __pyx_L4_argument_unpacking_done; jpayne@68: __pyx_L3_error:; jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.seek", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return NULL; jpayne@68: __pyx_L4_argument_unpacking_done:; jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_28seek(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self), __pyx_v_offset, __pyx_v_whence); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_28seek(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self, PyObject *__pyx_v_offset, PyObject *__pyx_v_whence) { jpayne@68: int64_t __pyx_v_off; jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_t_1; jpayne@68: PyObject *__pyx_t_2 = NULL; jpayne@68: PyObject *__pyx_t_3 = NULL; jpayne@68: int64_t __pyx_t_4; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("seek", 1); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":194 jpayne@68: * jpayne@68: * def seek(self, offset, whence=io.SEEK_SET): jpayne@68: * if not self.bgzf: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: * if whence is not io.SEEK_SET: jpayne@68: */ jpayne@68: __pyx_t_1 = (!(__pyx_v_self->bgzf != 0)); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":195 jpayne@68: * def seek(self, offset, whence=io.SEEK_SET): jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("seek() on closed BGZFile object") # <<<<<<<<<<<<<< jpayne@68: * if whence is not io.SEEK_SET: jpayne@68: * raise ValueError('Seek from end not supported') jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__16, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 195, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 195, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":194 jpayne@68: * jpayne@68: * def seek(self, offset, whence=io.SEEK_SET): jpayne@68: * if not self.bgzf: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: * if whence is not io.SEEK_SET: jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":196 jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: * if whence is not io.SEEK_SET: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError('Seek from end not supported') jpayne@68: * jpayne@68: */ jpayne@68: __Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_io); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 196, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_SEEK_SET); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 196, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __pyx_t_1 = (__pyx_v_whence != __pyx_t_3); jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":197 jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: * if whence is not io.SEEK_SET: jpayne@68: * raise ValueError('Seek from end not supported') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef int64_t off = bgzf_seek(self.bgzf, offset, SEEK_SET) jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__19, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 197, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __Pyx_Raise(__pyx_t_3, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: __PYX_ERR(0, 197, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":196 jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: * if whence is not io.SEEK_SET: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError('Seek from end not supported') jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":199 jpayne@68: * raise ValueError('Seek from end not supported') jpayne@68: * jpayne@68: * cdef int64_t off = bgzf_seek(self.bgzf, offset, SEEK_SET) # <<<<<<<<<<<<<< jpayne@68: * if off < 0: jpayne@68: * raise IOError('Error seeking BGZFFile object') jpayne@68: */ jpayne@68: __pyx_t_4 = __Pyx_PyInt_As_int64_t(__pyx_v_offset); if (unlikely((__pyx_t_4 == ((int64_t)-1)) && PyErr_Occurred())) __PYX_ERR(0, 199, __pyx_L1_error) jpayne@68: __pyx_v_off = bgzf_seek(__pyx_v_self->bgzf, __pyx_t_4, SEEK_SET); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":200 jpayne@68: * jpayne@68: * cdef int64_t off = bgzf_seek(self.bgzf, offset, SEEK_SET) jpayne@68: * if off < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error seeking BGZFFile object') jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_off < 0); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":201 jpayne@68: * cdef int64_t off = bgzf_seek(self.bgzf, offset, SEEK_SET) jpayne@68: * if off < 0: jpayne@68: * raise IOError('Error seeking BGZFFile object') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * return off jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_tuple__14, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 201, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __Pyx_Raise(__pyx_t_3, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: __PYX_ERR(0, 201, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":200 jpayne@68: * jpayne@68: * cdef int64_t off = bgzf_seek(self.bgzf, offset, SEEK_SET) jpayne@68: * if off < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error seeking BGZFFile object') jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":203 jpayne@68: * raise IOError('Error seeking BGZFFile object') jpayne@68: * jpayne@68: * return off # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def readline(self, size=-1): jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __pyx_t_3 = __Pyx_PyInt_From_int64_t(__pyx_v_off); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 203, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __pyx_r = __pyx_t_3; jpayne@68: __pyx_t_3 = 0; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":193 jpayne@68: * return off jpayne@68: * jpayne@68: * def seek(self, offset, whence=io.SEEK_SET): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_2); jpayne@68: __Pyx_XDECREF(__pyx_t_3); jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.seek", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":205 jpayne@68: * return off jpayne@68: * jpayne@68: * def readline(self, size=-1): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("readline() on closed BGZFile object") jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_31readline(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: static PyMethodDef __pyx_mdef_5pysam_8libcbgzf_7BGZFile_31readline = {"readline", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_31readline, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}; jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_31readline(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: CYTHON_UNUSED PyObject *__pyx_v_size = 0; jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[1] = {0}; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("readline (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_size,0}; jpayne@68: values[0] = __Pyx_Arg_NewRef_FASTCALL(((PyObject *)__pyx_int_neg_1)); jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (kw_args > 0) { jpayne@68: PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_size); jpayne@68: if (value) { values[0] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 205, __pyx_L3_error) jpayne@68: } jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "readline") < 0)) __PYX_ERR(0, 205, __pyx_L3_error) jpayne@68: } jpayne@68: } else { jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: } jpayne@68: __pyx_v_size = values[0]; jpayne@68: } jpayne@68: goto __pyx_L6_skip; jpayne@68: __pyx_L5_argtuple_error:; jpayne@68: __Pyx_RaiseArgtupleInvalid("readline", 0, 0, 1, __pyx_nargs); __PYX_ERR(0, 205, __pyx_L3_error) jpayne@68: __pyx_L6_skip:; jpayne@68: goto __pyx_L4_argument_unpacking_done; jpayne@68: __pyx_L3_error:; jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.readline", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return NULL; jpayne@68: __pyx_L4_argument_unpacking_done:; jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_30readline(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self), __pyx_v_size); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_30readline(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_size) { jpayne@68: kstring_t __pyx_v_line; jpayne@68: int __pyx_v_ret; jpayne@68: PyObject *__pyx_v_s = NULL; jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_t_1; jpayne@68: PyObject *__pyx_t_2 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("readline", 1); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":206 jpayne@68: * jpayne@68: * def readline(self, size=-1): jpayne@68: * if not self.bgzf: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError("readline() on closed BGZFile object") jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_1 = (!(__pyx_v_self->bgzf != 0)); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":207 jpayne@68: * def readline(self, size=-1): jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("readline() on closed BGZFile object") # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef kstring_t line jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__20, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 207, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 207, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":206 jpayne@68: * jpayne@68: * def readline(self, size=-1): jpayne@68: * if not self.bgzf: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError("readline() on closed BGZFile object") jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":212 jpayne@68: * cdef char c jpayne@68: * jpayne@68: * line.l = line.m = 0 # <<<<<<<<<<<<<< jpayne@68: * line.s = NULL jpayne@68: * jpayne@68: */ jpayne@68: __pyx_v_line.l = 0; jpayne@68: __pyx_v_line.m = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":213 jpayne@68: * jpayne@68: * line.l = line.m = 0 jpayne@68: * line.s = NULL # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef int ret = bgzf_getline(self.bgzf, b'\n', &line) jpayne@68: */ jpayne@68: __pyx_v_line.s = NULL; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":215 jpayne@68: * line.s = NULL jpayne@68: * jpayne@68: * cdef int ret = bgzf_getline(self.bgzf, b'\n', &line) # <<<<<<<<<<<<<< jpayne@68: * if ret == -1: jpayne@68: * s = b'' jpayne@68: */ jpayne@68: __pyx_v_ret = bgzf_getline(__pyx_v_self->bgzf, '\n', (&__pyx_v_line)); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":216 jpayne@68: * jpayne@68: * cdef int ret = bgzf_getline(self.bgzf, b'\n', &line) jpayne@68: * if ret == -1: # <<<<<<<<<<<<<< jpayne@68: * s = b'' jpayne@68: * elif ret == -2: jpayne@68: */ jpayne@68: switch (__pyx_v_ret) { jpayne@68: case -1L: jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":217 jpayne@68: * cdef int ret = bgzf_getline(self.bgzf, b'\n', &line) jpayne@68: * if ret == -1: jpayne@68: * s = b'' # <<<<<<<<<<<<<< jpayne@68: * elif ret == -2: jpayne@68: * if line.m: jpayne@68: */ jpayne@68: __Pyx_INCREF(__pyx_kp_b__7); jpayne@68: __pyx_v_s = __pyx_kp_b__7; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":216 jpayne@68: * jpayne@68: * cdef int ret = bgzf_getline(self.bgzf, b'\n', &line) jpayne@68: * if ret == -1: # <<<<<<<<<<<<<< jpayne@68: * s = b'' jpayne@68: * elif ret == -2: jpayne@68: */ jpayne@68: break; jpayne@68: case -2L: jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":219 jpayne@68: * s = b'' jpayne@68: * elif ret == -2: jpayne@68: * if line.m: # <<<<<<<<<<<<<< jpayne@68: * free(line.s) jpayne@68: * raise IOError('Error reading line in BGZFFile object') jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_line.m != 0); jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":220 jpayne@68: * elif ret == -2: jpayne@68: * if line.m: jpayne@68: * free(line.s) # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Error reading line in BGZFFile object') jpayne@68: * else: jpayne@68: */ jpayne@68: free(__pyx_v_line.s); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":219 jpayne@68: * s = b'' jpayne@68: * elif ret == -2: jpayne@68: * if line.m: # <<<<<<<<<<<<<< jpayne@68: * free(line.s) jpayne@68: * raise IOError('Error reading line in BGZFFile object') jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":221 jpayne@68: * if line.m: jpayne@68: * free(line.s) jpayne@68: * raise IOError('Error reading line in BGZFFile object') # <<<<<<<<<<<<<< jpayne@68: * else: jpayne@68: * s = line.s[:line.l] jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_tuple__21, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 221, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 221, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":218 jpayne@68: * if ret == -1: jpayne@68: * s = b'' jpayne@68: * elif ret == -2: # <<<<<<<<<<<<<< jpayne@68: * if line.m: jpayne@68: * free(line.s) jpayne@68: */ jpayne@68: break; jpayne@68: default: jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":223 jpayne@68: * raise IOError('Error reading line in BGZFFile object') jpayne@68: * else: jpayne@68: * s = line.s[:line.l] # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if line.m: jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyBytes_FromStringAndSize(__pyx_v_line.s + 0, __pyx_v_line.l - 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 223, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_v_s = ((PyObject*)__pyx_t_2); jpayne@68: __pyx_t_2 = 0; jpayne@68: break; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":225 jpayne@68: * s = line.s[:line.l] jpayne@68: * jpayne@68: * if line.m: # <<<<<<<<<<<<<< jpayne@68: * free(line.s) jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_line.m != 0); jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":226 jpayne@68: * jpayne@68: * if line.m: jpayne@68: * free(line.s) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * return s jpayne@68: */ jpayne@68: free(__pyx_v_line.s); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":225 jpayne@68: * s = line.s[:line.l] jpayne@68: * jpayne@68: * if line.m: # <<<<<<<<<<<<<< jpayne@68: * free(line.s) jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":228 jpayne@68: * free(line.s) jpayne@68: * jpayne@68: * return s # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def __iter__(self): jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __Pyx_INCREF(__pyx_v_s); jpayne@68: __pyx_r = __pyx_v_s; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":205 jpayne@68: * return off jpayne@68: * jpayne@68: * def readline(self, size=-1): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("readline() on closed BGZFile object") jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_2); jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.readline", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XDECREF(__pyx_v_s); jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":230 jpayne@68: * return s jpayne@68: * jpayne@68: * def __iter__(self): # <<<<<<<<<<<<<< jpayne@68: * return self jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_33__iter__(PyObject *__pyx_v_self); /*proto*/ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_33__iter__(PyObject *__pyx_v_self) { jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__iter__ (wrapper)", 0); jpayne@68: __pyx_kwvalues = __Pyx_KwValues_VARARGS(__pyx_args, __pyx_nargs); jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_32__iter__(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_32__iter__(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__iter__", 1); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":231 jpayne@68: * jpayne@68: * def __iter__(self): jpayne@68: * return self # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def __next__(self): jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __Pyx_INCREF((PyObject *)__pyx_v_self); jpayne@68: __pyx_r = ((PyObject *)__pyx_v_self); jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":230 jpayne@68: * return s jpayne@68: * jpayne@68: * def __iter__(self): # <<<<<<<<<<<<<< jpayne@68: * return self jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":233 jpayne@68: * return self jpayne@68: * jpayne@68: * def __next__(self): # <<<<<<<<<<<<<< jpayne@68: * line = self.readline() jpayne@68: * if not line: jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_35__next__(PyObject *__pyx_v_self); /*proto*/ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_35__next__(PyObject *__pyx_v_self) { jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__next__ (wrapper)", 0); jpayne@68: __pyx_kwvalues = __Pyx_KwValues_VARARGS(__pyx_args, __pyx_nargs); jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_34__next__(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_34__next__(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self) { jpayne@68: PyObject *__pyx_v_line = NULL; jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_error_without_exception = 0; /* StopIteration */ jpayne@68: PyObject *__pyx_t_1 = NULL; jpayne@68: PyObject *__pyx_t_2 = NULL; jpayne@68: PyObject *__pyx_t_3 = NULL; jpayne@68: unsigned int __pyx_t_4; jpayne@68: int __pyx_t_5; jpayne@68: int __pyx_t_6; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("__next__", 1); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":234 jpayne@68: * jpayne@68: * def __next__(self): jpayne@68: * line = self.readline() # <<<<<<<<<<<<<< jpayne@68: * if not line: jpayne@68: * raise StopIteration() jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_readline); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 234, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_t_3 = NULL; jpayne@68: __pyx_t_4 = 0; jpayne@68: #if CYTHON_UNPACK_METHODS jpayne@68: if (likely(PyMethod_Check(__pyx_t_2))) { jpayne@68: __pyx_t_3 = PyMethod_GET_SELF(__pyx_t_2); jpayne@68: if (likely(__pyx_t_3)) { jpayne@68: PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2); jpayne@68: __Pyx_INCREF(__pyx_t_3); jpayne@68: __Pyx_INCREF(function); jpayne@68: __Pyx_DECREF_SET(__pyx_t_2, function); jpayne@68: __pyx_t_4 = 1; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: { jpayne@68: PyObject *__pyx_callargs[2] = {__pyx_t_3, NULL}; jpayne@68: __pyx_t_1 = __Pyx_PyObject_FastCall(__pyx_t_2, __pyx_callargs+1-__pyx_t_4, 0+__pyx_t_4); jpayne@68: __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 234, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: } jpayne@68: __pyx_v_line = __pyx_t_1; jpayne@68: __pyx_t_1 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":235 jpayne@68: * def __next__(self): jpayne@68: * line = self.readline() jpayne@68: * if not line: # <<<<<<<<<<<<<< jpayne@68: * raise StopIteration() jpayne@68: * return line jpayne@68: */ jpayne@68: __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_v_line); if (unlikely((__pyx_t_5 < 0))) __PYX_ERR(0, 235, __pyx_L1_error) jpayne@68: __pyx_t_6 = (!__pyx_t_5); jpayne@68: if (unlikely(__pyx_t_6)) { jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":236 jpayne@68: * line = self.readline() jpayne@68: * if not line: jpayne@68: * raise StopIteration() # <<<<<<<<<<<<<< jpayne@68: * return line jpayne@68: */ jpayne@68: __pyx_error_without_exception = 1; jpayne@68: goto __pyx_L1_error;; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":235 jpayne@68: * def __next__(self): jpayne@68: * line = self.readline() jpayne@68: * if not line: # <<<<<<<<<<<<<< jpayne@68: * raise StopIteration() jpayne@68: * return line jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":237 jpayne@68: * if not line: jpayne@68: * raise StopIteration() jpayne@68: * return line # <<<<<<<<<<<<<< jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __Pyx_INCREF(__pyx_v_line); jpayne@68: __pyx_r = __pyx_v_line; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":233 jpayne@68: * return self jpayne@68: * jpayne@68: * def __next__(self): # <<<<<<<<<<<<<< jpayne@68: * line = self.readline() jpayne@68: * if not line: jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_1); jpayne@68: __Pyx_XDECREF(__pyx_t_2); jpayne@68: __Pyx_XDECREF(__pyx_t_3); jpayne@68: if (!__pyx_error_without_exception) { jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.__next__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: } jpayne@68: __pyx_r = NULL; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XDECREF(__pyx_v_line); jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libcbgzf.pxd":7 jpayne@68: * cdef class BGZFile(object): jpayne@68: * cdef BGZF *bgzf jpayne@68: * cdef readonly object name, index # <<<<<<<<<<<<<< jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_4name_1__get__(PyObject *__pyx_v_self); /*proto*/ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_4name_1__get__(PyObject *__pyx_v_self) { jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__get__ (wrapper)", 0); jpayne@68: __pyx_kwvalues = __Pyx_KwValues_VARARGS(__pyx_args, __pyx_nargs); jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_4name___get__(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_4name___get__(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__get__", 1); jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __Pyx_INCREF(__pyx_v_self->name); jpayne@68: __pyx_r = __pyx_v_self->name; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_5index_1__get__(PyObject *__pyx_v_self); /*proto*/ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_5index_1__get__(PyObject *__pyx_v_self) { jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__get__ (wrapper)", 0); jpayne@68: __pyx_kwvalues = __Pyx_KwValues_VARARGS(__pyx_args, __pyx_nargs); jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_5index___get__(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_5index___get__(struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__get__", 1); jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __Pyx_INCREF(__pyx_v_self->index); jpayne@68: __pyx_r = __pyx_v_self->index; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "(tree fragment)":1 jpayne@68: * def __reduce_cython__(self): # <<<<<<<<<<<<<< jpayne@68: * raise TypeError, "self.bgzf cannot be converted to a Python object for pickling" jpayne@68: * def __setstate_cython__(self, __pyx_state): jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_37__reduce_cython__(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: static PyMethodDef __pyx_mdef_5pysam_8libcbgzf_7BGZFile_37__reduce_cython__ = {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_37__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}; jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_37__reduce_cython__(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__reduce_cython__ (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: if (unlikely(__pyx_nargs > 0)) { jpayne@68: __Pyx_RaiseArgtupleInvalid("__reduce_cython__", 1, 0, 0, __pyx_nargs); return NULL;} jpayne@68: if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "__reduce_cython__", 0))) return NULL; jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_36__reduce_cython__(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_36__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("__reduce_cython__", 1); jpayne@68: jpayne@68: /* "(tree fragment)":2 jpayne@68: * def __reduce_cython__(self): jpayne@68: * raise TypeError, "self.bgzf cannot be converted to a Python object for pickling" # <<<<<<<<<<<<<< jpayne@68: * def __setstate_cython__(self, __pyx_state): jpayne@68: * raise TypeError, "self.bgzf cannot be converted to a Python object for pickling" jpayne@68: */ jpayne@68: __Pyx_Raise(__pyx_builtin_TypeError, __pyx_kp_s_self_bgzf_cannot_be_converted_to, 0, 0); jpayne@68: __PYX_ERR(1, 2, __pyx_L1_error) jpayne@68: jpayne@68: /* "(tree fragment)":1 jpayne@68: * def __reduce_cython__(self): # <<<<<<<<<<<<<< jpayne@68: * raise TypeError, "self.bgzf cannot be converted to a Python object for pickling" jpayne@68: * def __setstate_cython__(self, __pyx_state): jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "(tree fragment)":3 jpayne@68: * def __reduce_cython__(self): jpayne@68: * raise TypeError, "self.bgzf cannot be converted to a Python object for pickling" jpayne@68: * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<< jpayne@68: * raise TypeError, "self.bgzf cannot be converted to a Python object for pickling" jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_39__setstate_cython__(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: static PyMethodDef __pyx_mdef_5pysam_8libcbgzf_7BGZFile_39__setstate_cython__ = {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_39__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}; jpayne@68: static PyObject *__pyx_pw_5pysam_8libcbgzf_7BGZFile_39__setstate_cython__(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: CYTHON_UNUSED PyObject *__pyx_v___pyx_state = 0; jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[1] = {0}; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__setstate_cython__ (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_pyx_state,0}; jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (likely((values[0] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_pyx_state)) != 0)) { jpayne@68: (void)__Pyx_Arg_NewRef_FASTCALL(values[0]); jpayne@68: kw_args--; jpayne@68: } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 3, __pyx_L3_error) jpayne@68: else goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "__setstate_cython__") < 0)) __PYX_ERR(1, 3, __pyx_L3_error) jpayne@68: } jpayne@68: } else if (unlikely(__pyx_nargs != 1)) { jpayne@68: goto __pyx_L5_argtuple_error; jpayne@68: } else { jpayne@68: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: } jpayne@68: __pyx_v___pyx_state = values[0]; jpayne@68: } jpayne@68: goto __pyx_L6_skip; jpayne@68: __pyx_L5_argtuple_error:; jpayne@68: __Pyx_RaiseArgtupleInvalid("__setstate_cython__", 1, 1, 1, __pyx_nargs); __PYX_ERR(1, 3, __pyx_L3_error) jpayne@68: __pyx_L6_skip:; jpayne@68: goto __pyx_L4_argument_unpacking_done; jpayne@68: __pyx_L3_error:; jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return NULL; jpayne@68: __pyx_L4_argument_unpacking_done:; jpayne@68: __pyx_r = __pyx_pf_5pysam_8libcbgzf_7BGZFile_38__setstate_cython__(((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)__pyx_v_self), __pyx_v___pyx_state); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_8libcbgzf_7BGZFile_38__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_8libcbgzf_BGZFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("__setstate_cython__", 1); jpayne@68: jpayne@68: /* "(tree fragment)":4 jpayne@68: * raise TypeError, "self.bgzf cannot be converted to a Python object for pickling" jpayne@68: * def __setstate_cython__(self, __pyx_state): jpayne@68: * raise TypeError, "self.bgzf cannot be converted to a Python object for pickling" # <<<<<<<<<<<<<< jpayne@68: */ jpayne@68: __Pyx_Raise(__pyx_builtin_TypeError, __pyx_kp_s_self_bgzf_cannot_be_converted_to, 0, 0); jpayne@68: __PYX_ERR(1, 4, __pyx_L1_error) jpayne@68: jpayne@68: /* "(tree fragment)":3 jpayne@68: * def __reduce_cython__(self): jpayne@68: * raise TypeError, "self.bgzf cannot be converted to a Python object for pickling" jpayne@68: * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<< jpayne@68: * raise TypeError, "self.bgzf cannot be converted to a Python object for pickling" jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_AddTraceback("pysam.libcbgzf.BGZFile.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_tp_new_5pysam_8libcbgzf_BGZFile(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { jpayne@68: struct __pyx_obj_5pysam_8libcbgzf_BGZFile *p; jpayne@68: PyObject *o; jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); jpayne@68: o = alloc_func(t, 0); jpayne@68: #else jpayne@68: if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { jpayne@68: o = (*t->tp_alloc)(t, 0); jpayne@68: } else { jpayne@68: o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); jpayne@68: } jpayne@68: if (unlikely(!o)) return 0; jpayne@68: #endif jpayne@68: p = ((struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)o); jpayne@68: p->name = Py_None; Py_INCREF(Py_None); jpayne@68: p->index = Py_None; Py_INCREF(Py_None); jpayne@68: return o; jpayne@68: } jpayne@68: jpayne@68: static void __pyx_tp_dealloc_5pysam_8libcbgzf_BGZFile(PyObject *o) { jpayne@68: struct __pyx_obj_5pysam_8libcbgzf_BGZFile *p = (struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)o; jpayne@68: #if CYTHON_USE_TP_FINALIZE jpayne@68: if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { jpayne@68: if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_8libcbgzf_BGZFile) { jpayne@68: if (PyObject_CallFinalizerFromDealloc(o)) return; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: PyObject_GC_UnTrack(o); jpayne@68: { jpayne@68: PyObject *etype, *eval, *etb; jpayne@68: PyErr_Fetch(&etype, &eval, &etb); jpayne@68: __Pyx_SET_REFCNT(o, Py_REFCNT(o) + 1); jpayne@68: __pyx_pw_5pysam_8libcbgzf_7BGZFile_3__dealloc__(o); jpayne@68: __Pyx_SET_REFCNT(o, Py_REFCNT(o) - 1); jpayne@68: PyErr_Restore(etype, eval, etb); jpayne@68: } jpayne@68: Py_CLEAR(p->name); jpayne@68: Py_CLEAR(p->index); jpayne@68: #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY jpayne@68: (*Py_TYPE(o)->tp_free)(o); jpayne@68: #else jpayne@68: { jpayne@68: freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); jpayne@68: if (tp_free) tp_free(o); jpayne@68: } jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: static int __pyx_tp_traverse_5pysam_8libcbgzf_BGZFile(PyObject *o, visitproc v, void *a) { jpayne@68: int e; jpayne@68: struct __pyx_obj_5pysam_8libcbgzf_BGZFile *p = (struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)o; jpayne@68: if (p->name) { jpayne@68: e = (*v)(p->name, a); if (e) return e; jpayne@68: } jpayne@68: if (p->index) { jpayne@68: e = (*v)(p->index, a); if (e) return e; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: jpayne@68: static int __pyx_tp_clear_5pysam_8libcbgzf_BGZFile(PyObject *o) { jpayne@68: PyObject* tmp; jpayne@68: struct __pyx_obj_5pysam_8libcbgzf_BGZFile *p = (struct __pyx_obj_5pysam_8libcbgzf_BGZFile *)o; jpayne@68: tmp = ((PyObject*)p->name); jpayne@68: p->name = Py_None; Py_INCREF(Py_None); jpayne@68: Py_XDECREF(tmp); jpayne@68: tmp = ((PyObject*)p->index); jpayne@68: p->index = Py_None; Py_INCREF(Py_None); jpayne@68: Py_XDECREF(tmp); jpayne@68: return 0; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_8libcbgzf_7BGZFile_closed(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_8libcbgzf_7BGZFile_6closed_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_8libcbgzf_7BGZFile_name(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_8libcbgzf_7BGZFile_4name_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_8libcbgzf_7BGZFile_index(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_8libcbgzf_7BGZFile_5index_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_specialmethod___pyx_pw_5pysam_8libcbgzf_7BGZFile_35__next__(PyObject *self, CYTHON_UNUSED PyObject *arg) { jpayne@68: PyObject *res = __pyx_pw_5pysam_8libcbgzf_7BGZFile_35__next__(self); jpayne@68: if (!res && !PyErr_Occurred()) { PyErr_SetNone(PyExc_StopIteration); } jpayne@68: return res; jpayne@68: } jpayne@68: jpayne@68: static PyMethodDef __pyx_methods_5pysam_8libcbgzf_BGZFile[] = { jpayne@68: {"write", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_5write, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, jpayne@68: {"read", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_7read, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, jpayne@68: {"close", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_9close, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, jpayne@68: {"__enter__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_11__enter__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, jpayne@68: {"__exit__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_13__exit__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, jpayne@68: {"flush", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_15flush, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, jpayne@68: {"fileno", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_17fileno, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_8libcbgzf_7BGZFile_16fileno}, jpayne@68: {"rewind", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_19rewind, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_8libcbgzf_7BGZFile_18rewind}, jpayne@68: {"readable", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_21readable, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, jpayne@68: {"writable", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_23writable, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, jpayne@68: {"seekable", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_25seekable, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, jpayne@68: {"tell", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_27tell, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, jpayne@68: {"seek", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_29seek, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, jpayne@68: {"readline", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_31readline, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, jpayne@68: {"__next__", (PyCFunction)__pyx_specialmethod___pyx_pw_5pysam_8libcbgzf_7BGZFile_35__next__, METH_NOARGS|METH_COEXIST, 0}, jpayne@68: {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_37__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, jpayne@68: {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_8libcbgzf_7BGZFile_39__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}, jpayne@68: {0, 0, 0, 0} jpayne@68: }; jpayne@68: jpayne@68: static struct PyGetSetDef __pyx_getsets_5pysam_8libcbgzf_BGZFile[] = { jpayne@68: {(char *)"closed", __pyx_getprop_5pysam_8libcbgzf_7BGZFile_closed, 0, (char *)0, 0}, jpayne@68: {(char *)"name", __pyx_getprop_5pysam_8libcbgzf_7BGZFile_name, 0, (char *)0, 0}, jpayne@68: {(char *)"index", __pyx_getprop_5pysam_8libcbgzf_7BGZFile_index, 0, (char *)0, 0}, jpayne@68: {0, 0, 0, 0, 0} jpayne@68: }; jpayne@68: #if CYTHON_USE_TYPE_SPECS jpayne@68: static PyType_Slot __pyx_type_5pysam_8libcbgzf_BGZFile_slots[] = { jpayne@68: {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_8libcbgzf_BGZFile}, jpayne@68: {Py_tp_doc, (void *)PyDoc_STR("The BGZFile class simulates most of the methods of a file object with\n the exception of the truncate() method.\n\n This class only supports opening files in binary mode. If you need to open a\n compressed file in text mode, use the gzip.open() function.\n ")}, jpayne@68: {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_8libcbgzf_BGZFile}, jpayne@68: {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_8libcbgzf_BGZFile}, jpayne@68: {Py_tp_iter, (void *)__pyx_pw_5pysam_8libcbgzf_7BGZFile_33__iter__}, jpayne@68: {Py_tp_iternext, (void *)__pyx_pw_5pysam_8libcbgzf_7BGZFile_35__next__}, jpayne@68: {Py_tp_methods, (void *)__pyx_methods_5pysam_8libcbgzf_BGZFile}, jpayne@68: {Py_tp_getset, (void *)__pyx_getsets_5pysam_8libcbgzf_BGZFile}, jpayne@68: {Py_tp_init, (void *)__pyx_pw_5pysam_8libcbgzf_7BGZFile_1__init__}, jpayne@68: {Py_tp_new, (void *)__pyx_tp_new_5pysam_8libcbgzf_BGZFile}, jpayne@68: {0, 0}, jpayne@68: }; jpayne@68: static PyType_Spec __pyx_type_5pysam_8libcbgzf_BGZFile_spec = { jpayne@68: "pysam.libcbgzf.BGZFile", jpayne@68: sizeof(struct __pyx_obj_5pysam_8libcbgzf_BGZFile), jpayne@68: 0, jpayne@68: Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, jpayne@68: __pyx_type_5pysam_8libcbgzf_BGZFile_slots, jpayne@68: }; jpayne@68: #else jpayne@68: jpayne@68: static PyTypeObject __pyx_type_5pysam_8libcbgzf_BGZFile = { jpayne@68: PyVarObject_HEAD_INIT(0, 0) jpayne@68: "pysam.libcbgzf.""BGZFile", /*tp_name*/ jpayne@68: sizeof(struct __pyx_obj_5pysam_8libcbgzf_BGZFile), /*tp_basicsize*/ jpayne@68: 0, /*tp_itemsize*/ jpayne@68: __pyx_tp_dealloc_5pysam_8libcbgzf_BGZFile, /*tp_dealloc*/ jpayne@68: #if PY_VERSION_HEX < 0x030800b4 jpayne@68: 0, /*tp_print*/ jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030800b4 jpayne@68: 0, /*tp_vectorcall_offset*/ jpayne@68: #endif jpayne@68: 0, /*tp_getattr*/ jpayne@68: 0, /*tp_setattr*/ jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: 0, /*tp_compare*/ jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: 0, /*tp_as_async*/ jpayne@68: #endif jpayne@68: 0, /*tp_repr*/ jpayne@68: 0, /*tp_as_number*/ jpayne@68: 0, /*tp_as_sequence*/ jpayne@68: 0, /*tp_as_mapping*/ jpayne@68: 0, /*tp_hash*/ jpayne@68: 0, /*tp_call*/ jpayne@68: 0, /*tp_str*/ jpayne@68: 0, /*tp_getattro*/ jpayne@68: 0, /*tp_setattro*/ jpayne@68: 0, /*tp_as_buffer*/ jpayne@68: Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ jpayne@68: PyDoc_STR("The BGZFile class simulates most of the methods of a file object with\n the exception of the truncate() method.\n\n This class only supports opening files in binary mode. If you need to open a\n compressed file in text mode, use the gzip.open() function.\n "), /*tp_doc*/ jpayne@68: __pyx_tp_traverse_5pysam_8libcbgzf_BGZFile, /*tp_traverse*/ jpayne@68: __pyx_tp_clear_5pysam_8libcbgzf_BGZFile, /*tp_clear*/ jpayne@68: 0, /*tp_richcompare*/ jpayne@68: 0, /*tp_weaklistoffset*/ jpayne@68: __pyx_pw_5pysam_8libcbgzf_7BGZFile_33__iter__, /*tp_iter*/ jpayne@68: __pyx_pw_5pysam_8libcbgzf_7BGZFile_35__next__, /*tp_iternext*/ jpayne@68: __pyx_methods_5pysam_8libcbgzf_BGZFile, /*tp_methods*/ jpayne@68: 0, /*tp_members*/ jpayne@68: __pyx_getsets_5pysam_8libcbgzf_BGZFile, /*tp_getset*/ jpayne@68: 0, /*tp_base*/ jpayne@68: 0, /*tp_dict*/ jpayne@68: 0, /*tp_descr_get*/ jpayne@68: 0, /*tp_descr_set*/ jpayne@68: #if !CYTHON_USE_TYPE_SPECS jpayne@68: 0, /*tp_dictoffset*/ jpayne@68: #endif jpayne@68: __pyx_pw_5pysam_8libcbgzf_7BGZFile_1__init__, /*tp_init*/ jpayne@68: 0, /*tp_alloc*/ jpayne@68: __pyx_tp_new_5pysam_8libcbgzf_BGZFile, /*tp_new*/ jpayne@68: 0, /*tp_free*/ jpayne@68: 0, /*tp_is_gc*/ jpayne@68: 0, /*tp_bases*/ jpayne@68: 0, /*tp_mro*/ jpayne@68: 0, /*tp_cache*/ jpayne@68: 0, /*tp_subclasses*/ jpayne@68: 0, /*tp_weaklist*/ jpayne@68: 0, /*tp_del*/ jpayne@68: 0, /*tp_version_tag*/ jpayne@68: #if PY_VERSION_HEX >= 0x030400a1 jpayne@68: #if CYTHON_USE_TP_FINALIZE jpayne@68: 0, /*tp_finalize*/ jpayne@68: #else jpayne@68: NULL, /*tp_finalize*/ jpayne@68: #endif jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) jpayne@68: 0, /*tp_vectorcall*/ jpayne@68: #endif jpayne@68: #if __PYX_NEED_TP_PRINT_SLOT == 1 jpayne@68: 0, /*tp_print*/ jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030C0000 jpayne@68: 0, /*tp_watched*/ jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030d00A4 jpayne@68: 0, /*tp_versions_used*/ jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 jpayne@68: 0, /*tp_pypy_flags*/ jpayne@68: #endif jpayne@68: }; jpayne@68: #endif jpayne@68: jpayne@68: static PyMethodDef __pyx_methods[] = { jpayne@68: {0, 0, 0, 0} jpayne@68: }; jpayne@68: #ifndef CYTHON_SMALL_CODE jpayne@68: #if defined(__clang__) jpayne@68: #define CYTHON_SMALL_CODE jpayne@68: #elif defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 3)) jpayne@68: #define CYTHON_SMALL_CODE __attribute__((cold)) jpayne@68: #else jpayne@68: #define CYTHON_SMALL_CODE jpayne@68: #endif jpayne@68: #endif jpayne@68: /* #### Code section: pystring_table ### */ jpayne@68: jpayne@68: static int __Pyx_CreateStringTabAndInitStrings(void) { jpayne@68: __Pyx_StringTabEntry __pyx_string_tab[] = { jpayne@68: {&__pyx_n_s_AttributeError, __pyx_k_AttributeError, sizeof(__pyx_k_AttributeError), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_BGZFile, __pyx_k_BGZFile, sizeof(__pyx_k_BGZFile), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_u_BGZFile, __pyx_k_BGZFile, sizeof(__pyx_k_BGZFile), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_s_BGZFile___enter, __pyx_k_BGZFile___enter, sizeof(__pyx_k_BGZFile___enter), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_BGZFile___exit, __pyx_k_BGZFile___exit, sizeof(__pyx_k_BGZFile___exit), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_BGZFile___reduce_cython, __pyx_k_BGZFile___reduce_cython, sizeof(__pyx_k_BGZFile___reduce_cython), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_BGZFile___setstate_cython, __pyx_k_BGZFile___setstate_cython, sizeof(__pyx_k_BGZFile___setstate_cython), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_BGZFile_close, __pyx_k_BGZFile_close, sizeof(__pyx_k_BGZFile_close), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_BGZFile_fileno, __pyx_k_BGZFile_fileno, sizeof(__pyx_k_BGZFile_fileno), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_BGZFile_flush, __pyx_k_BGZFile_flush, sizeof(__pyx_k_BGZFile_flush), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_BGZFile_read, __pyx_k_BGZFile_read, sizeof(__pyx_k_BGZFile_read), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_BGZFile_readable, __pyx_k_BGZFile_readable, sizeof(__pyx_k_BGZFile_readable), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_BGZFile_readline, __pyx_k_BGZFile_readline, sizeof(__pyx_k_BGZFile_readline), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_BGZFile_rewind, __pyx_k_BGZFile_rewind, sizeof(__pyx_k_BGZFile_rewind), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_BGZFile_seek, __pyx_k_BGZFile_seek, sizeof(__pyx_k_BGZFile_seek), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_BGZFile_seekable, __pyx_k_BGZFile_seekable, sizeof(__pyx_k_BGZFile_seekable), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_BGZFile_tell, __pyx_k_BGZFile_tell, sizeof(__pyx_k_BGZFile_tell), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_BGZFile_writable, __pyx_k_BGZFile_writable, sizeof(__pyx_k_BGZFile_writable), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_BGZFile_write, __pyx_k_BGZFile_write, sizeof(__pyx_k_BGZFile_write), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_u_BGZFile_write_failed, __pyx_k_BGZFile_write_failed, sizeof(__pyx_k_BGZFile_write_failed), 0, 1, 0, 0}, jpayne@68: {&__pyx_n_s_BUFFER_SIZE, __pyx_k_BUFFER_SIZE, sizeof(__pyx_k_BUFFER_SIZE), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_u_Can_t_rewind_in_write_mode, __pyx_k_Can_t_rewind_in_write_mode, sizeof(__pyx_k_Can_t_rewind_in_write_mode), 0, 1, 0, 0}, jpayne@68: {&__pyx_kp_u_Cannot_write_index, __pyx_k_Cannot_write_index, sizeof(__pyx_k_Cannot_write_index), 0, 1, 0, 0}, jpayne@68: {&__pyx_n_s_DEFAULT_BUFFER_SIZE, __pyx_k_DEFAULT_BUFFER_SIZE, sizeof(__pyx_k_DEFAULT_BUFFER_SIZE), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_EBADF, __pyx_k_EBADF, sizeof(__pyx_k_EBADF), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_u_Error_building_bgzf_index, __pyx_k_Error_building_bgzf_index, sizeof(__pyx_k_Error_building_bgzf_index), 0, 1, 0, 0}, jpayne@68: {&__pyx_kp_u_Error_closing_BGZFile_object, __pyx_k_Error_closing_BGZFile_object, sizeof(__pyx_k_Error_closing_BGZFile_object), 0, 1, 0, 0}, jpayne@68: {&__pyx_kp_u_Error_flushing_BGZFile_object, __pyx_k_Error_flushing_BGZFile_object, sizeof(__pyx_k_Error_flushing_BGZFile_object), 0, 1, 0, 0}, jpayne@68: {&__pyx_kp_u_Error_in_tell_on_BGZFFile_object, __pyx_k_Error_in_tell_on_BGZFFile_object, sizeof(__pyx_k_Error_in_tell_on_BGZFFile_object), 0, 1, 0, 0}, jpayne@68: {&__pyx_kp_u_Error_reading_from_BGZFile, __pyx_k_Error_reading_from_BGZFile, sizeof(__pyx_k_Error_reading_from_BGZFile), 0, 1, 0, 0}, jpayne@68: {&__pyx_kp_u_Error_reading_line_in_BGZFFile_o, __pyx_k_Error_reading_line_in_BGZFFile_o, sizeof(__pyx_k_Error_reading_line_in_BGZFFile_o), 0, 1, 0, 0}, jpayne@68: {&__pyx_kp_u_Error_seeking_BGZFFile_object, __pyx_k_Error_seeking_BGZFFile_object, sizeof(__pyx_k_Error_seeking_BGZFFile_object), 0, 1, 0, 0}, jpayne@68: {&__pyx_n_s_IOError, __pyx_k_IOError, sizeof(__pyx_k_IOError), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_u_Invalid_mode_r, __pyx_k_Invalid_mode_r, sizeof(__pyx_k_Invalid_mode_r), 0, 1, 0, 0}, jpayne@68: {&__pyx_n_s_MemoryError, __pyx_k_MemoryError, sizeof(__pyx_k_MemoryError), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_SEEK_SET, __pyx_k_SEEK_SET, sizeof(__pyx_k_SEEK_SET), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_u_Seek_from_end_not_supported, __pyx_k_Seek_from_end_not_supported, sizeof(__pyx_k_Seek_from_end_not_supported), 0, 1, 0, 0}, jpayne@68: {&__pyx_n_s_StopIteration, __pyx_k_StopIteration, sizeof(__pyx_k_StopIteration), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_TypeError, __pyx_k_TypeError, sizeof(__pyx_k_TypeError), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_u_U, __pyx_k_U, sizeof(__pyx_k_U), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_s_ValueError, __pyx_k_ValueError, sizeof(__pyx_k_ValueError), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s__3, __pyx_k__3, sizeof(__pyx_k__3), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s__48, __pyx_k__48, sizeof(__pyx_k__48), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_b__7, __pyx_k__7, sizeof(__pyx_k__7), 0, 0, 0, 0}, jpayne@68: {&__pyx_n_s_all, __pyx_k_all, sizeof(__pyx_k_all), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_asyncio_coroutines, __pyx_k_asyncio_coroutines, sizeof(__pyx_k_asyncio_coroutines), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_u_b, __pyx_k_b, sizeof(__pyx_k_b), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_s_c, __pyx_k_c, sizeof(__pyx_k_c), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_cdata, __pyx_k_cdata, sizeof(__pyx_k_cdata), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_chunk, __pyx_k_chunk, sizeof(__pyx_k_chunk), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_chunks, __pyx_k_chunks, sizeof(__pyx_k_chunks), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_cline_in_traceback, __pyx_k_cline_in_traceback, sizeof(__pyx_k_cline_in_traceback), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_close, __pyx_k_close, sizeof(__pyx_k_close), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_data, __pyx_k_data, sizeof(__pyx_k_data), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_u_disable, __pyx_k_disable, sizeof(__pyx_k_disable), 0, 1, 0, 0}, jpayne@68: {&__pyx_kp_u_enable, __pyx_k_enable, sizeof(__pyx_k_enable), 0, 1, 0, 0}, jpayne@68: {&__pyx_n_s_enter, __pyx_k_enter, sizeof(__pyx_k_enter), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_errno, __pyx_k_errno, sizeof(__pyx_k_errno), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_exit, __pyx_k_exit, sizeof(__pyx_k_exit), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_filename, __pyx_k_filename, sizeof(__pyx_k_filename), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_fileno, __pyx_k_fileno, sizeof(__pyx_k_fileno), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_u_fileno, __pyx_k_fileno, sizeof(__pyx_k_fileno), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_s_flush, __pyx_k_flush, sizeof(__pyx_k_flush), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_format, __pyx_k_format, sizeof(__pyx_k_format), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_u_gc, __pyx_k_gc, sizeof(__pyx_k_gc), 0, 1, 0, 0}, jpayne@68: {&__pyx_n_s_getstate, __pyx_k_getstate, sizeof(__pyx_k_getstate), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_import, __pyx_k_import, sizeof(__pyx_k_import), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_index, __pyx_k_index, sizeof(__pyx_k_index), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_initializing, __pyx_k_initializing, sizeof(__pyx_k_initializing), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_io, __pyx_k_io, sizeof(__pyx_k_io), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_is_coroutine, __pyx_k_is_coroutine, sizeof(__pyx_k_is_coroutine), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_u_isenabled, __pyx_k_isenabled, sizeof(__pyx_k_isenabled), 0, 1, 0, 0}, jpayne@68: {&__pyx_n_s_join, __pyx_k_join, sizeof(__pyx_k_join), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_length, __pyx_k_length, sizeof(__pyx_k_length), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_line, __pyx_k_line, sizeof(__pyx_k_line), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_main, __pyx_k_main, sizeof(__pyx_k_main), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_mode, __pyx_k_mode, sizeof(__pyx_k_mode), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_name, __pyx_k_name, sizeof(__pyx_k_name), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_nbytes, __pyx_k_nbytes, sizeof(__pyx_k_nbytes), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_off, __pyx_k_off, sizeof(__pyx_k_off), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_offset, __pyx_k_offset, sizeof(__pyx_k_offset), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_pysam_libcbgzf, __pyx_k_pysam_libcbgzf, sizeof(__pyx_k_pysam_libcbgzf), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_s_pysam_libcbgzf_pyx, __pyx_k_pysam_libcbgzf_pyx, sizeof(__pyx_k_pysam_libcbgzf_pyx), 0, 0, 1, 0}, jpayne@68: {&__pyx_n_s_pyx_state, __pyx_k_pyx_state, sizeof(__pyx_k_pyx_state), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_pyx_vtable, __pyx_k_pyx_vtable, sizeof(__pyx_k_pyx_vtable), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_u_rb, __pyx_k_rb, sizeof(__pyx_k_rb), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_s_read, __pyx_k_read, sizeof(__pyx_k_read), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_u_read_on_closed_BGZFile_object, __pyx_k_read_on_closed_BGZFile_object, sizeof(__pyx_k_read_on_closed_BGZFile_object), 0, 1, 0, 0}, jpayne@68: {&__pyx_kp_u_read_on_write_only_BGZFile_objec, __pyx_k_read_on_write_only_BGZFile_objec, sizeof(__pyx_k_read_on_write_only_BGZFile_objec), 0, 1, 0, 0}, jpayne@68: {&__pyx_n_s_read_size, __pyx_k_read_size, sizeof(__pyx_k_read_size), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_readable, __pyx_k_readable, sizeof(__pyx_k_readable), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_u_readable_on_closed_BGZFile_objec, __pyx_k_readable_on_closed_BGZFile_objec, sizeof(__pyx_k_readable_on_closed_BGZFile_objec), 0, 1, 0, 0}, jpayne@68: {&__pyx_n_s_readline, __pyx_k_readline, sizeof(__pyx_k_readline), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_u_readline_on_closed_BGZFile_objec, __pyx_k_readline_on_closed_BGZFile_objec, sizeof(__pyx_k_readline_on_closed_BGZFile_objec), 0, 1, 0, 0}, jpayne@68: {&__pyx_n_s_reduce, __pyx_k_reduce, sizeof(__pyx_k_reduce), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_reduce_cython, __pyx_k_reduce_cython, sizeof(__pyx_k_reduce_cython), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_reduce_ex, __pyx_k_reduce_ex, sizeof(__pyx_k_reduce_ex), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_ret, __pyx_k_ret, sizeof(__pyx_k_ret), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_rewind, __pyx_k_rewind, sizeof(__pyx_k_rewind), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_u_rewind_on_closed_BGZFile_object, __pyx_k_rewind_on_closed_BGZFile_object, sizeof(__pyx_k_rewind_on_closed_BGZFile_object), 0, 1, 0, 0}, jpayne@68: {&__pyx_n_s_s, __pyx_k_s, sizeof(__pyx_k_s), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_seek, __pyx_k_seek, sizeof(__pyx_k_seek), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_u_seek_on_closed_BGZFile_object, __pyx_k_seek_on_closed_BGZFile_object, sizeof(__pyx_k_seek_on_closed_BGZFile_object), 0, 1, 0, 0}, jpayne@68: {&__pyx_n_s_seekable, __pyx_k_seekable, sizeof(__pyx_k_seekable), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_self, __pyx_k_self, sizeof(__pyx_k_self), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_s_self_bgzf_cannot_be_converted_to, __pyx_k_self_bgzf_cannot_be_converted_to, sizeof(__pyx_k_self_bgzf_cannot_be_converted_to), 0, 0, 1, 0}, jpayne@68: {&__pyx_n_s_setstate, __pyx_k_setstate, sizeof(__pyx_k_setstate), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_setstate_cython, __pyx_k_setstate_cython, sizeof(__pyx_k_setstate_cython), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_size, __pyx_k_size, sizeof(__pyx_k_size), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_spec, __pyx_k_spec, sizeof(__pyx_k_spec), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_s_stringsource, __pyx_k_stringsource, sizeof(__pyx_k_stringsource), 0, 0, 1, 0}, jpayne@68: {&__pyx_n_u_t, __pyx_k_t, sizeof(__pyx_k_t), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_s_tb, __pyx_k_tb, sizeof(__pyx_k_tb), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_tell, __pyx_k_tell, sizeof(__pyx_k_tell), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_test, __pyx_k_test, sizeof(__pyx_k_test), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_type, __pyx_k_type, sizeof(__pyx_k_type), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_value, __pyx_k_value, sizeof(__pyx_k_value), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_whence, __pyx_k_whence, sizeof(__pyx_k_whence), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_writable, __pyx_k_writable, sizeof(__pyx_k_writable), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_write, __pyx_k_write, sizeof(__pyx_k_write), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_u_write_on_closed_BGZFile_object, __pyx_k_write_on_closed_BGZFile_object, sizeof(__pyx_k_write_on_closed_BGZFile_object), 0, 1, 0, 0}, jpayne@68: {&__pyx_kp_u_write_on_read_only_BGZFile_objec, __pyx_k_write_on_read_only_BGZFile_objec, sizeof(__pyx_k_write_on_read_only_BGZFile_objec), 0, 1, 0, 0}, jpayne@68: {0, 0, 0, 0, 0, 0, 0} jpayne@68: }; jpayne@68: return __Pyx_InitStrings(__pyx_string_tab); jpayne@68: } jpayne@68: /* #### Code section: cached_builtins ### */ jpayne@68: static CYTHON_SMALL_CODE int __Pyx_InitCachedBuiltins(void) { jpayne@68: __pyx_builtin_ValueError = __Pyx_GetBuiltinName(__pyx_n_s_ValueError); if (!__pyx_builtin_ValueError) __PYX_ERR(0, 47, __pyx_L1_error) jpayne@68: __pyx_builtin_IOError = __Pyx_GetBuiltinName(__pyx_n_s_IOError); if (!__pyx_builtin_IOError) __PYX_ERR(0, 61, __pyx_L1_error) jpayne@68: __pyx_builtin_AttributeError = __Pyx_GetBuiltinName(__pyx_n_s_AttributeError); if (!__pyx_builtin_AttributeError) __PYX_ERR(0, 161, __pyx_L1_error) jpayne@68: __pyx_builtin_StopIteration = __Pyx_GetBuiltinName(__pyx_n_s_StopIteration); if (!__pyx_builtin_StopIteration) __PYX_ERR(0, 236, __pyx_L1_error) jpayne@68: __pyx_builtin_TypeError = __Pyx_GetBuiltinName(__pyx_n_s_TypeError); if (!__pyx_builtin_TypeError) __PYX_ERR(1, 2, __pyx_L1_error) jpayne@68: __pyx_builtin_MemoryError = __Pyx_GetBuiltinName(__pyx_n_s_MemoryError); if (!__pyx_builtin_MemoryError) __PYX_ERR(3, 120, __pyx_L1_error) jpayne@68: return 0; jpayne@68: __pyx_L1_error:; jpayne@68: return -1; jpayne@68: } jpayne@68: /* #### Code section: cached_constants ### */ jpayne@68: jpayne@68: static CYTHON_SMALL_CODE int __Pyx_InitCachedConstants(void) { jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__Pyx_InitCachedConstants", 0); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":61 jpayne@68: * jpayne@68: * if self.bgzf.is_write and index is not None and bgzf_index_build_init(self.bgzf) < 0: jpayne@68: * raise IOError('Error building bgzf index') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def __dealloc__(self): jpayne@68: */ jpayne@68: __pyx_tuple_ = PyTuple_Pack(1, __pyx_kp_u_Error_building_bgzf_index); if (unlikely(!__pyx_tuple_)) __PYX_ERR(0, 61, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple_); jpayne@68: __Pyx_GIVEREF(__pyx_tuple_); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":68 jpayne@68: * def write(self, data): jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("write() on closed BGZFile object") # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if not self.bgzf.is_write: jpayne@68: */ jpayne@68: __pyx_tuple__2 = PyTuple_Pack(1, __pyx_kp_u_write_on_closed_BGZFile_object); if (unlikely(!__pyx_tuple__2)) __PYX_ERR(0, 68, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__2); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__2); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":82 jpayne@68: * jpayne@68: * if length > 0 and bgzf_write(self.bgzf, data, length) < 0: jpayne@68: * raise IOError('BGZFile write failed') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * return length jpayne@68: */ jpayne@68: __pyx_tuple__4 = PyTuple_Pack(1, __pyx_kp_u_BGZFile_write_failed); if (unlikely(!__pyx_tuple__4)) __PYX_ERR(0, 82, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__4); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__4); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":90 jpayne@68: * jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("read() on closed BGZFile object") # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if self.bgzf.is_write: jpayne@68: */ jpayne@68: __pyx_tuple__5 = PyTuple_Pack(1, __pyx_kp_u_read_on_closed_BGZFile_object); if (unlikely(!__pyx_tuple__5)) __PYX_ERR(0, 90, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__5); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__5); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":103 jpayne@68: * read_size = bgzf_read(self.bgzf, chunk, BUFFER_SIZE) jpayne@68: * if read_size < 0: jpayne@68: * raise IOError('Error reading from BGZFile') # <<<<<<<<<<<<<< jpayne@68: * elif not read_size: jpayne@68: * break jpayne@68: */ jpayne@68: __pyx_tuple__6 = PyTuple_Pack(1, __pyx_kp_u_Error_reading_from_BGZFile); if (unlikely(!__pyx_tuple__6)) __PYX_ERR(0, 103, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__6); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__6); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":131 jpayne@68: * jpayne@68: * if self.bgzf.is_write and bgzf_flush(self.bgzf) < 0: jpayne@68: * raise IOError('Error flushing BGZFile object') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if self.index and bgzf_index_dump(self.bgzf, self.index, NULL) < 0: jpayne@68: */ jpayne@68: __pyx_tuple__8 = PyTuple_Pack(1, __pyx_kp_u_Error_flushing_BGZFile_object); if (unlikely(!__pyx_tuple__8)) __PYX_ERR(0, 131, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__8); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__8); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":134 jpayne@68: * jpayne@68: * if self.index and bgzf_index_dump(self.bgzf, self.index, NULL) < 0: jpayne@68: * raise IOError('Cannot write index') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef ret = bgzf_close(self.bgzf) jpayne@68: */ jpayne@68: __pyx_tuple__9 = PyTuple_Pack(1, __pyx_kp_u_Cannot_write_index); if (unlikely(!__pyx_tuple__9)) __PYX_ERR(0, 134, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__9); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__9); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":140 jpayne@68: * jpayne@68: * if ret < 0: jpayne@68: * raise IOError('Error closing BGZFile object') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def __enter__(self): jpayne@68: */ jpayne@68: __pyx_tuple__10 = PyTuple_Pack(1, __pyx_kp_u_Error_closing_BGZFile_object); if (unlikely(!__pyx_tuple__10)) __PYX_ERR(0, 140, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__10); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__10); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":161 jpayne@68: * doesn't support fileno(). jpayne@68: * """ jpayne@68: * raise AttributeError('fileno') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def rewind(self): jpayne@68: */ jpayne@68: __pyx_tuple__11 = PyTuple_Pack(1, __pyx_n_u_fileno); if (unlikely(!__pyx_tuple__11)) __PYX_ERR(0, 161, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__11); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__11); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":167 jpayne@68: * beginning of the file''' jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("rewind() on closed BGZFile object") # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf.is_write: jpayne@68: * raise IOError("Can't rewind in write mode") jpayne@68: */ jpayne@68: __pyx_tuple__12 = PyTuple_Pack(1, __pyx_kp_u_rewind_on_closed_BGZFile_object); if (unlikely(!__pyx_tuple__12)) __PYX_ERR(0, 167, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__12); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__12); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":169 jpayne@68: * raise ValueError("rewind() on closed BGZFile object") jpayne@68: * if not self.bgzf.is_write: jpayne@68: * raise IOError("Can't rewind in write mode") # <<<<<<<<<<<<<< jpayne@68: * if bgzf_seek(self.bgzf, 0, SEEK_SET) < 0: jpayne@68: * raise IOError('Error seeking BGZFFile object') jpayne@68: */ jpayne@68: __pyx_tuple__13 = PyTuple_Pack(1, __pyx_kp_u_Can_t_rewind_in_write_mode); if (unlikely(!__pyx_tuple__13)) __PYX_ERR(0, 169, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__13); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__13); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":171 jpayne@68: * raise IOError("Can't rewind in write mode") jpayne@68: * if bgzf_seek(self.bgzf, 0, SEEK_SET) < 0: jpayne@68: * raise IOError('Error seeking BGZFFile object') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def readable(self): jpayne@68: */ jpayne@68: __pyx_tuple__14 = PyTuple_Pack(1, __pyx_kp_u_Error_seeking_BGZFFile_object); if (unlikely(!__pyx_tuple__14)) __PYX_ERR(0, 171, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__14); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__14); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":175 jpayne@68: * def readable(self): jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("readable() on closed BGZFile object") # <<<<<<<<<<<<<< jpayne@68: * return self.bgzf != NULL and not self.bgzf.is_write jpayne@68: * jpayne@68: */ jpayne@68: __pyx_tuple__15 = PyTuple_Pack(1, __pyx_kp_u_readable_on_closed_BGZFile_objec); if (unlikely(!__pyx_tuple__15)) __PYX_ERR(0, 175, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__15); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__15); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":186 jpayne@68: * def tell(self): jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("seek() on closed BGZFile object") # <<<<<<<<<<<<<< jpayne@68: * cdef int64_t off = bgzf_tell(self.bgzf) jpayne@68: * if off < 0: jpayne@68: */ jpayne@68: __pyx_tuple__16 = PyTuple_Pack(1, __pyx_kp_u_seek_on_closed_BGZFile_object); if (unlikely(!__pyx_tuple__16)) __PYX_ERR(0, 186, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__16); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__16); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":189 jpayne@68: * cdef int64_t off = bgzf_tell(self.bgzf) jpayne@68: * if off < 0: jpayne@68: * raise IOError('Error in tell on BGZFFile object') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * return off jpayne@68: */ jpayne@68: __pyx_tuple__17 = PyTuple_Pack(1, __pyx_kp_u_Error_in_tell_on_BGZFFile_object); if (unlikely(!__pyx_tuple__17)) __PYX_ERR(0, 189, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__17); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__17); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":197 jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: * if whence is not io.SEEK_SET: jpayne@68: * raise ValueError('Seek from end not supported') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef int64_t off = bgzf_seek(self.bgzf, offset, SEEK_SET) jpayne@68: */ jpayne@68: __pyx_tuple__19 = PyTuple_Pack(1, __pyx_kp_u_Seek_from_end_not_supported); if (unlikely(!__pyx_tuple__19)) __PYX_ERR(0, 197, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__19); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__19); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":207 jpayne@68: * def readline(self, size=-1): jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("readline() on closed BGZFile object") # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef kstring_t line jpayne@68: */ jpayne@68: __pyx_tuple__20 = PyTuple_Pack(1, __pyx_kp_u_readline_on_closed_BGZFile_objec); if (unlikely(!__pyx_tuple__20)) __PYX_ERR(0, 207, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__20); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__20); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":221 jpayne@68: * if line.m: jpayne@68: * free(line.s) jpayne@68: * raise IOError('Error reading line in BGZFFile object') # <<<<<<<<<<<<<< jpayne@68: * else: jpayne@68: * s = line.s[:line.l] jpayne@68: */ jpayne@68: __pyx_tuple__21 = PyTuple_Pack(1, __pyx_kp_u_Error_reading_line_in_BGZFFile_o); if (unlikely(!__pyx_tuple__21)) __PYX_ERR(0, 221, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__21); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__21); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":66 jpayne@68: * self.close() jpayne@68: * jpayne@68: * def write(self, data): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("write() on closed BGZFile object") jpayne@68: */ jpayne@68: __pyx_tuple__22 = PyTuple_Pack(4, __pyx_n_s_self, __pyx_n_s_data, __pyx_n_s_errno, __pyx_n_s_length); if (unlikely(!__pyx_tuple__22)) __PYX_ERR(0, 66, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__22); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__22); jpayne@68: __pyx_codeobj__23 = (PyObject*)__Pyx_PyCode_New(2, 0, 0, 4, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__22, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libcbgzf_pyx, __pyx_n_s_write, 66, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__23)) __PYX_ERR(0, 66, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":86 jpayne@68: * return length jpayne@68: * jpayne@68: * def read(self, size=-1): # <<<<<<<<<<<<<< jpayne@68: * cdef ssize_t read_size jpayne@68: * jpayne@68: */ jpayne@68: __pyx_tuple__24 = PyTuple_Pack(7, __pyx_n_s_self, __pyx_n_s_size, __pyx_n_s_read_size, __pyx_n_s_errno, __pyx_n_s_chunks, __pyx_n_s_chunk, __pyx_n_s_cdata); if (unlikely(!__pyx_tuple__24)) __PYX_ERR(0, 86, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__24); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__24); jpayne@68: __pyx_codeobj__25 = (PyObject*)__Pyx_PyCode_New(2, 0, 0, 7, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__24, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libcbgzf_pyx, __pyx_n_s_read, 86, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__25)) __PYX_ERR(0, 86, __pyx_L1_error) jpayne@68: __pyx_tuple__26 = PyTuple_Pack(1, __pyx_int_neg_1); if (unlikely(!__pyx_tuple__26)) __PYX_ERR(0, 86, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__26); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__26); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":126 jpayne@68: * return self.bgzf == NULL jpayne@68: * jpayne@68: * def close(self): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * return jpayne@68: */ jpayne@68: __pyx_tuple__27 = PyTuple_Pack(2, __pyx_n_s_self, __pyx_n_s_ret); if (unlikely(!__pyx_tuple__27)) __PYX_ERR(0, 126, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__27); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__27); jpayne@68: __pyx_codeobj__28 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__27, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libcbgzf_pyx, __pyx_n_s_close, 126, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__28)) __PYX_ERR(0, 126, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":142 jpayne@68: * raise IOError('Error closing BGZFile object') jpayne@68: * jpayne@68: * def __enter__(self): # <<<<<<<<<<<<<< jpayne@68: * return self jpayne@68: * jpayne@68: */ jpayne@68: __pyx_tuple__29 = PyTuple_Pack(1, __pyx_n_s_self); if (unlikely(!__pyx_tuple__29)) __PYX_ERR(0, 142, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__29); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__29); jpayne@68: __pyx_codeobj__30 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libcbgzf_pyx, __pyx_n_s_enter, 142, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__30)) __PYX_ERR(0, 142, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":145 jpayne@68: * return self jpayne@68: * jpayne@68: * def __exit__(self, type, value, tb): # <<<<<<<<<<<<<< jpayne@68: * self.close() jpayne@68: * jpayne@68: */ jpayne@68: __pyx_tuple__31 = PyTuple_Pack(4, __pyx_n_s_self, __pyx_n_s_type, __pyx_n_s_value, __pyx_n_s_tb); if (unlikely(!__pyx_tuple__31)) __PYX_ERR(0, 145, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__31); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__31); jpayne@68: __pyx_codeobj__32 = (PyObject*)__Pyx_PyCode_New(4, 0, 0, 4, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__31, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libcbgzf_pyx, __pyx_n_s_exit, 145, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__32)) __PYX_ERR(0, 145, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":148 jpayne@68: * self.close() jpayne@68: * jpayne@68: * def flush(self): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * return jpayne@68: */ jpayne@68: __pyx_codeobj__33 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libcbgzf_pyx, __pyx_n_s_flush, 148, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__33)) __PYX_ERR(0, 148, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":155 jpayne@68: * raise IOError('Error flushing BGZFile object') jpayne@68: * jpayne@68: * def fileno(self): # <<<<<<<<<<<<<< jpayne@68: * """Invoke the underlying file object's fileno() method. jpayne@68: * jpayne@68: */ jpayne@68: __pyx_codeobj__34 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libcbgzf_pyx, __pyx_n_s_fileno, 155, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__34)) __PYX_ERR(0, 155, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":163 jpayne@68: * raise AttributeError('fileno') jpayne@68: * jpayne@68: * def rewind(self): # <<<<<<<<<<<<<< jpayne@68: * '''Return the uncompressed stream file position indicator to the jpayne@68: * beginning of the file''' jpayne@68: */ jpayne@68: __pyx_codeobj__35 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libcbgzf_pyx, __pyx_n_s_rewind, 163, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__35)) __PYX_ERR(0, 163, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":173 jpayne@68: * raise IOError('Error seeking BGZFFile object') jpayne@68: * jpayne@68: * def readable(self): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("readable() on closed BGZFile object") jpayne@68: */ jpayne@68: __pyx_codeobj__36 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libcbgzf_pyx, __pyx_n_s_readable, 173, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__36)) __PYX_ERR(0, 173, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":178 jpayne@68: * return self.bgzf != NULL and not self.bgzf.is_write jpayne@68: * jpayne@68: * def writable(self): # <<<<<<<<<<<<<< jpayne@68: * return self.bgzf != NULL and self.bgzf.is_write jpayne@68: * jpayne@68: */ jpayne@68: __pyx_codeobj__37 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libcbgzf_pyx, __pyx_n_s_writable, 178, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__37)) __PYX_ERR(0, 178, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":181 jpayne@68: * return self.bgzf != NULL and self.bgzf.is_write jpayne@68: * jpayne@68: * def seekable(self): # <<<<<<<<<<<<<< jpayne@68: * return True jpayne@68: * jpayne@68: */ jpayne@68: __pyx_codeobj__38 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libcbgzf_pyx, __pyx_n_s_seekable, 181, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__38)) __PYX_ERR(0, 181, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":184 jpayne@68: * return True jpayne@68: * jpayne@68: * def tell(self): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: */ jpayne@68: __pyx_tuple__39 = PyTuple_Pack(2, __pyx_n_s_self, __pyx_n_s_off); if (unlikely(!__pyx_tuple__39)) __PYX_ERR(0, 184, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__39); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__39); jpayne@68: __pyx_codeobj__40 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__39, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libcbgzf_pyx, __pyx_n_s_tell, 184, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__40)) __PYX_ERR(0, 184, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":193 jpayne@68: * return off jpayne@68: * jpayne@68: * def seek(self, offset, whence=io.SEEK_SET): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: */ jpayne@68: __pyx_tuple__41 = PyTuple_Pack(4, __pyx_n_s_self, __pyx_n_s_offset, __pyx_n_s_whence, __pyx_n_s_off); if (unlikely(!__pyx_tuple__41)) __PYX_ERR(0, 193, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__41); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__41); jpayne@68: __pyx_codeobj__42 = (PyObject*)__Pyx_PyCode_New(3, 0, 0, 4, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__41, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libcbgzf_pyx, __pyx_n_s_seek, 193, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__42)) __PYX_ERR(0, 193, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":205 jpayne@68: * return off jpayne@68: * jpayne@68: * def readline(self, size=-1): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("readline() on closed BGZFile object") jpayne@68: */ jpayne@68: __pyx_tuple__43 = PyTuple_Pack(6, __pyx_n_s_self, __pyx_n_s_size, __pyx_n_s_line, __pyx_n_s_c, __pyx_n_s_ret, __pyx_n_s_s); if (unlikely(!__pyx_tuple__43)) __PYX_ERR(0, 205, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__43); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__43); jpayne@68: __pyx_codeobj__44 = (PyObject*)__Pyx_PyCode_New(2, 0, 0, 6, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__43, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libcbgzf_pyx, __pyx_n_s_readline, 205, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__44)) __PYX_ERR(0, 205, __pyx_L1_error) jpayne@68: jpayne@68: /* "(tree fragment)":1 jpayne@68: * def __reduce_cython__(self): # <<<<<<<<<<<<<< jpayne@68: * raise TypeError, "self.bgzf cannot be converted to a Python object for pickling" jpayne@68: * def __setstate_cython__(self, __pyx_state): jpayne@68: */ jpayne@68: __pyx_codeobj__45 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_stringsource, __pyx_n_s_reduce_cython, 1, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__45)) __PYX_ERR(1, 1, __pyx_L1_error) jpayne@68: jpayne@68: /* "(tree fragment)":3 jpayne@68: * def __reduce_cython__(self): jpayne@68: * raise TypeError, "self.bgzf cannot be converted to a Python object for pickling" jpayne@68: * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<< jpayne@68: * raise TypeError, "self.bgzf cannot be converted to a Python object for pickling" jpayne@68: */ jpayne@68: __pyx_tuple__46 = PyTuple_Pack(2, __pyx_n_s_self, __pyx_n_s_pyx_state); if (unlikely(!__pyx_tuple__46)) __PYX_ERR(1, 3, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_tuple__46); jpayne@68: __Pyx_GIVEREF(__pyx_tuple__46); jpayne@68: __pyx_codeobj__47 = (PyObject*)__Pyx_PyCode_New(2, 0, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__46, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_stringsource, __pyx_n_s_setstate_cython, 3, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__47)) __PYX_ERR(1, 3, __pyx_L1_error) jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return 0; jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return -1; jpayne@68: } jpayne@68: /* #### Code section: init_constants ### */ jpayne@68: jpayne@68: static CYTHON_SMALL_CODE int __Pyx_InitConstants(void) { jpayne@68: if (__Pyx_CreateStringTabAndInitStrings() < 0) __PYX_ERR(0, 1, __pyx_L1_error); jpayne@68: __pyx_int_0 = PyInt_FromLong(0); if (unlikely(!__pyx_int_0)) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: __pyx_int_neg_1 = PyInt_FromLong(-1); if (unlikely(!__pyx_int_neg_1)) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: return 0; jpayne@68: __pyx_L1_error:; jpayne@68: return -1; jpayne@68: } jpayne@68: /* #### Code section: init_globals ### */ jpayne@68: jpayne@68: static CYTHON_SMALL_CODE int __Pyx_InitGlobals(void) { jpayne@68: return 0; jpayne@68: } jpayne@68: /* #### Code section: init_module ### */ jpayne@68: jpayne@68: static CYTHON_SMALL_CODE int __Pyx_modinit_global_init_code(void); /*proto*/ jpayne@68: static CYTHON_SMALL_CODE int __Pyx_modinit_variable_export_code(void); /*proto*/ jpayne@68: static CYTHON_SMALL_CODE int __Pyx_modinit_function_export_code(void); /*proto*/ jpayne@68: static CYTHON_SMALL_CODE int __Pyx_modinit_type_init_code(void); /*proto*/ jpayne@68: static CYTHON_SMALL_CODE int __Pyx_modinit_type_import_code(void); /*proto*/ jpayne@68: static CYTHON_SMALL_CODE int __Pyx_modinit_variable_import_code(void); /*proto*/ jpayne@68: static CYTHON_SMALL_CODE int __Pyx_modinit_function_import_code(void); /*proto*/ jpayne@68: jpayne@68: static int __Pyx_modinit_global_init_code(void) { jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__Pyx_modinit_global_init_code", 0); jpayne@68: /*--- Global init code ---*/ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return 0; jpayne@68: } jpayne@68: jpayne@68: static int __Pyx_modinit_variable_export_code(void) { jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__Pyx_modinit_variable_export_code", 0); jpayne@68: /*--- Variable export code ---*/ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return 0; jpayne@68: } jpayne@68: jpayne@68: static int __Pyx_modinit_function_export_code(void) { jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__Pyx_modinit_function_export_code", 0); jpayne@68: /*--- Function export code ---*/ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return 0; jpayne@68: } jpayne@68: jpayne@68: static int __Pyx_modinit_type_init_code(void) { jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("__Pyx_modinit_type_init_code", 0); jpayne@68: /*--- Type init code ---*/ jpayne@68: #if CYTHON_USE_TYPE_SPECS jpayne@68: __pyx_ptype_5pysam_8libcbgzf_BGZFile = (PyTypeObject *) __Pyx_PyType_FromModuleAndSpec(__pyx_m, &__pyx_type_5pysam_8libcbgzf_BGZFile_spec, NULL); if (unlikely(!__pyx_ptype_5pysam_8libcbgzf_BGZFile)) __PYX_ERR(0, 30, __pyx_L1_error) jpayne@68: if (__Pyx_fix_up_extension_type_from_spec(&__pyx_type_5pysam_8libcbgzf_BGZFile_spec, __pyx_ptype_5pysam_8libcbgzf_BGZFile) < 0) __PYX_ERR(0, 30, __pyx_L1_error) jpayne@68: #else jpayne@68: __pyx_ptype_5pysam_8libcbgzf_BGZFile = &__pyx_type_5pysam_8libcbgzf_BGZFile; jpayne@68: #endif jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #endif jpayne@68: #if !CYTHON_USE_TYPE_SPECS jpayne@68: if (__Pyx_PyType_Ready(__pyx_ptype_5pysam_8libcbgzf_BGZFile) < 0) __PYX_ERR(0, 30, __pyx_L1_error) jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: __pyx_ptype_5pysam_8libcbgzf_BGZFile->tp_print = 0; jpayne@68: #endif jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_ptype_5pysam_8libcbgzf_BGZFile->tp_dictoffset && __pyx_ptype_5pysam_8libcbgzf_BGZFile->tp_getattro == PyObject_GenericGetAttr)) { jpayne@68: __pyx_ptype_5pysam_8libcbgzf_BGZFile->tp_getattro = __Pyx_PyObject_GenericGetAttr; jpayne@68: } jpayne@68: #endif jpayne@68: #if CYTHON_UPDATE_DESCRIPTOR_DOC jpayne@68: { jpayne@68: PyObject *wrapper = PyObject_GetAttrString((PyObject *)__pyx_ptype_5pysam_8libcbgzf_BGZFile, "__init__"); if (unlikely(!wrapper)) __PYX_ERR(0, 30, __pyx_L1_error) jpayne@68: if (__Pyx_IS_TYPE(wrapper, &PyWrapperDescr_Type)) { jpayne@68: __pyx_wrapperbase_5pysam_8libcbgzf_7BGZFile___init__ = *((PyWrapperDescrObject *)wrapper)->d_base; jpayne@68: __pyx_wrapperbase_5pysam_8libcbgzf_7BGZFile___init__.doc = __pyx_doc_5pysam_8libcbgzf_7BGZFile___init__; jpayne@68: ((PyWrapperDescrObject *)wrapper)->d_base = &__pyx_wrapperbase_5pysam_8libcbgzf_7BGZFile___init__; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: if (PyObject_SetAttr(__pyx_m, __pyx_n_s_BGZFile, (PyObject *) __pyx_ptype_5pysam_8libcbgzf_BGZFile) < 0) __PYX_ERR(0, 30, __pyx_L1_error) jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: if (__Pyx_setup_reduce((PyObject *) __pyx_ptype_5pysam_8libcbgzf_BGZFile) < 0) __PYX_ERR(0, 30, __pyx_L1_error) jpayne@68: #endif jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return 0; jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return -1; jpayne@68: } jpayne@68: jpayne@68: static int __Pyx_modinit_type_import_code(void) { jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: PyObject *__pyx_t_1 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("__Pyx_modinit_type_import_code", 0); jpayne@68: /*--- Type import code ---*/ jpayne@68: __pyx_t_1 = PyImport_ImportModule("pysam.libchtslib"); if (unlikely(!__pyx_t_1)) __PYX_ERR(4, 2706, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __pyx_ptype_5pysam_10libchtslib_HTSFile = __Pyx_ImportType_3_0_11(__pyx_t_1, "pysam.libchtslib", "HTSFile", sizeof(struct __pyx_obj_5pysam_10libchtslib_HTSFile), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(struct __pyx_obj_5pysam_10libchtslib_HTSFile),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_5pysam_10libchtslib_HTSFile) __PYX_ERR(4, 2706, __pyx_L1_error) jpayne@68: __pyx_vtabptr_5pysam_10libchtslib_HTSFile = (struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile*)__Pyx_GetVtable(__pyx_ptype_5pysam_10libchtslib_HTSFile); if (unlikely(!__pyx_vtabptr_5pysam_10libchtslib_HTSFile)) __PYX_ERR(4, 2706, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@68: __pyx_t_1 = PyImport_ImportModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_t_1)) __PYX_ERR(5, 9, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __pyx_ptype_7cpython_4type_type = __Pyx_ImportType_3_0_11(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "type", jpayne@68: #if defined(PYPY_VERSION_NUM) && PYPY_VERSION_NUM < 0x050B0000 jpayne@68: sizeof(PyTypeObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(PyTypeObject), jpayne@68: #elif CYTHON_COMPILING_IN_LIMITED_API jpayne@68: sizeof(PyTypeObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(PyTypeObject), jpayne@68: #else jpayne@68: sizeof(PyHeapTypeObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(PyHeapTypeObject), jpayne@68: #endif jpayne@68: __Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_7cpython_4type_type) __PYX_ERR(5, 9, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@68: __pyx_t_1 = PyImport_ImportModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_t_1)) __PYX_ERR(6, 8, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __pyx_ptype_7cpython_4bool_bool = __Pyx_ImportType_3_0_11(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "bool", sizeof(PyBoolObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(PyBoolObject),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_7cpython_4bool_bool) __PYX_ERR(6, 8, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@68: __pyx_t_1 = PyImport_ImportModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_t_1)) __PYX_ERR(7, 15, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __pyx_ptype_7cpython_7complex_complex = __Pyx_ImportType_3_0_11(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "complex", sizeof(PyComplexObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(PyComplexObject),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_7cpython_7complex_complex) __PYX_ERR(7, 15, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@68: __pyx_t_1 = PyImport_ImportModule("array"); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 69, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __pyx_ptype_7cpython_5array_array = __Pyx_ImportType_3_0_11(__pyx_t_1, "array", "array", sizeof(arrayobject), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(arrayobject),__Pyx_ImportType_CheckSize_Warn_3_0_11); if (!__pyx_ptype_7cpython_5array_array) __PYX_ERR(3, 69, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return 0; jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_1); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return -1; jpayne@68: } jpayne@68: jpayne@68: static int __Pyx_modinit_variable_import_code(void) { jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__Pyx_modinit_variable_import_code", 0); jpayne@68: /*--- Variable import code ---*/ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return 0; jpayne@68: } jpayne@68: jpayne@68: static int __Pyx_modinit_function_import_code(void) { jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: PyObject *__pyx_t_1 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("__Pyx_modinit_function_import_code", 0); jpayne@68: /*--- Function import code ---*/ jpayne@68: __pyx_t_1 = PyImport_ImportModule("pysam.libcutils"); if (!__pyx_t_1) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: if (__Pyx_ImportFunction_3_0_11(__pyx_t_1, "force_bytes", (void (**)(void))&__pyx_f_5pysam_9libcutils_force_bytes, "PyObject *(PyObject *, struct __pyx_opt_args_5pysam_9libcutils_force_bytes *__pyx_optional_args)") < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: if (__Pyx_ImportFunction_3_0_11(__pyx_t_1, "encode_filename", (void (**)(void))&__pyx_f_5pysam_9libcutils_encode_filename, "PyObject *(PyObject *)") < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return 0; jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_1); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return -1; jpayne@68: } jpayne@68: jpayne@68: jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: #if CYTHON_PEP489_MULTI_PHASE_INIT jpayne@68: static PyObject* __pyx_pymod_create(PyObject *spec, PyModuleDef *def); /*proto*/ jpayne@68: static int __pyx_pymod_exec_libcbgzf(PyObject* module); /*proto*/ jpayne@68: static PyModuleDef_Slot __pyx_moduledef_slots[] = { jpayne@68: {Py_mod_create, (void*)__pyx_pymod_create}, jpayne@68: {Py_mod_exec, (void*)__pyx_pymod_exec_libcbgzf}, jpayne@68: {0, NULL} jpayne@68: }; jpayne@68: #endif jpayne@68: jpayne@68: #ifdef __cplusplus jpayne@68: namespace { jpayne@68: struct PyModuleDef __pyx_moduledef = jpayne@68: #else jpayne@68: static struct PyModuleDef __pyx_moduledef = jpayne@68: #endif jpayne@68: { jpayne@68: PyModuleDef_HEAD_INIT, jpayne@68: "libcbgzf", jpayne@68: __pyx_k_Functions_that_read_and_write_bl, /* m_doc */ jpayne@68: #if CYTHON_PEP489_MULTI_PHASE_INIT jpayne@68: 0, /* m_size */ jpayne@68: #elif CYTHON_USE_MODULE_STATE jpayne@68: sizeof(__pyx_mstate), /* m_size */ jpayne@68: #else jpayne@68: -1, /* m_size */ jpayne@68: #endif jpayne@68: __pyx_methods /* m_methods */, jpayne@68: #if CYTHON_PEP489_MULTI_PHASE_INIT jpayne@68: __pyx_moduledef_slots, /* m_slots */ jpayne@68: #else jpayne@68: NULL, /* m_reload */ jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: __pyx_m_traverse, /* m_traverse */ jpayne@68: __pyx_m_clear, /* m_clear */ jpayne@68: NULL /* m_free */ jpayne@68: #else jpayne@68: NULL, /* m_traverse */ jpayne@68: NULL, /* m_clear */ jpayne@68: NULL /* m_free */ jpayne@68: #endif jpayne@68: }; jpayne@68: #ifdef __cplusplus jpayne@68: } /* anonymous namespace */ jpayne@68: #endif jpayne@68: #endif jpayne@68: jpayne@68: #ifndef CYTHON_NO_PYINIT_EXPORT jpayne@68: #define __Pyx_PyMODINIT_FUNC PyMODINIT_FUNC jpayne@68: #elif PY_MAJOR_VERSION < 3 jpayne@68: #ifdef __cplusplus jpayne@68: #define __Pyx_PyMODINIT_FUNC extern "C" void jpayne@68: #else jpayne@68: #define __Pyx_PyMODINIT_FUNC void jpayne@68: #endif jpayne@68: #else jpayne@68: #ifdef __cplusplus jpayne@68: #define __Pyx_PyMODINIT_FUNC extern "C" PyObject * jpayne@68: #else jpayne@68: #define __Pyx_PyMODINIT_FUNC PyObject * jpayne@68: #endif jpayne@68: #endif jpayne@68: jpayne@68: jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: __Pyx_PyMODINIT_FUNC initlibcbgzf(void) CYTHON_SMALL_CODE; /*proto*/ jpayne@68: __Pyx_PyMODINIT_FUNC initlibcbgzf(void) jpayne@68: #else jpayne@68: __Pyx_PyMODINIT_FUNC PyInit_libcbgzf(void) CYTHON_SMALL_CODE; /*proto*/ jpayne@68: __Pyx_PyMODINIT_FUNC PyInit_libcbgzf(void) jpayne@68: #if CYTHON_PEP489_MULTI_PHASE_INIT jpayne@68: { jpayne@68: return PyModuleDef_Init(&__pyx_moduledef); jpayne@68: } jpayne@68: static CYTHON_SMALL_CODE int __Pyx_check_single_interpreter(void) { jpayne@68: #if PY_VERSION_HEX >= 0x030700A1 jpayne@68: static PY_INT64_T main_interpreter_id = -1; jpayne@68: PY_INT64_T current_id = PyInterpreterState_GetID(PyThreadState_Get()->interp); jpayne@68: if (main_interpreter_id == -1) { jpayne@68: main_interpreter_id = current_id; jpayne@68: return (unlikely(current_id == -1)) ? -1 : 0; jpayne@68: } else if (unlikely(main_interpreter_id != current_id)) jpayne@68: #else jpayne@68: static PyInterpreterState *main_interpreter = NULL; jpayne@68: PyInterpreterState *current_interpreter = PyThreadState_Get()->interp; jpayne@68: if (!main_interpreter) { jpayne@68: main_interpreter = current_interpreter; jpayne@68: } else if (unlikely(main_interpreter != current_interpreter)) jpayne@68: #endif jpayne@68: { jpayne@68: PyErr_SetString( jpayne@68: PyExc_ImportError, jpayne@68: "Interpreter change detected - this module can only be loaded into one interpreter per process."); jpayne@68: return -1; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static CYTHON_SMALL_CODE int __Pyx_copy_spec_to_module(PyObject *spec, PyObject *module, const char* from_name, const char* to_name, int allow_none) jpayne@68: #else jpayne@68: static CYTHON_SMALL_CODE int __Pyx_copy_spec_to_module(PyObject *spec, PyObject *moddict, const char* from_name, const char* to_name, int allow_none) jpayne@68: #endif jpayne@68: { jpayne@68: PyObject *value = PyObject_GetAttrString(spec, from_name); jpayne@68: int result = 0; jpayne@68: if (likely(value)) { jpayne@68: if (allow_none || value != Py_None) { jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: result = PyModule_AddObject(module, to_name, value); jpayne@68: #else jpayne@68: result = PyDict_SetItemString(moddict, to_name, value); jpayne@68: #endif jpayne@68: } jpayne@68: Py_DECREF(value); jpayne@68: } else if (PyErr_ExceptionMatches(PyExc_AttributeError)) { jpayne@68: PyErr_Clear(); jpayne@68: } else { jpayne@68: result = -1; jpayne@68: } jpayne@68: return result; jpayne@68: } jpayne@68: static CYTHON_SMALL_CODE PyObject* __pyx_pymod_create(PyObject *spec, PyModuleDef *def) { jpayne@68: PyObject *module = NULL, *moddict, *modname; jpayne@68: CYTHON_UNUSED_VAR(def); jpayne@68: if (__Pyx_check_single_interpreter()) jpayne@68: return NULL; jpayne@68: if (__pyx_m) jpayne@68: return __Pyx_NewRef(__pyx_m); jpayne@68: modname = PyObject_GetAttrString(spec, "name"); jpayne@68: if (unlikely(!modname)) goto bad; jpayne@68: module = PyModule_NewObject(modname); jpayne@68: Py_DECREF(modname); jpayne@68: if (unlikely(!module)) goto bad; jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: moddict = module; jpayne@68: #else jpayne@68: moddict = PyModule_GetDict(module); jpayne@68: if (unlikely(!moddict)) goto bad; jpayne@68: #endif jpayne@68: if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "loader", "__loader__", 1) < 0)) goto bad; jpayne@68: if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "origin", "__file__", 1) < 0)) goto bad; jpayne@68: if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "parent", "__package__", 1) < 0)) goto bad; jpayne@68: if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "submodule_search_locations", "__path__", 0) < 0)) goto bad; jpayne@68: return module; jpayne@68: bad: jpayne@68: Py_XDECREF(module); jpayne@68: return NULL; jpayne@68: } jpayne@68: jpayne@68: jpayne@68: static CYTHON_SMALL_CODE int __pyx_pymod_exec_libcbgzf(PyObject *__pyx_pyinit_module) jpayne@68: #endif jpayne@68: #endif jpayne@68: { jpayne@68: int stringtab_initialized = 0; jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: int pystate_addmodule_run = 0; jpayne@68: #endif jpayne@68: PyObject *__pyx_t_1 = NULL; jpayne@68: PyObject *__pyx_t_2 = NULL; jpayne@68: PyObject *__pyx_t_3 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: #if CYTHON_PEP489_MULTI_PHASE_INIT jpayne@68: if (__pyx_m) { jpayne@68: if (__pyx_m == __pyx_pyinit_module) return 0; jpayne@68: PyErr_SetString(PyExc_RuntimeError, "Module 'libcbgzf' has already been imported. Re-initialisation is not supported."); jpayne@68: return -1; jpayne@68: } jpayne@68: #elif PY_MAJOR_VERSION >= 3 jpayne@68: if (__pyx_m) return __Pyx_NewRef(__pyx_m); jpayne@68: #endif jpayne@68: /*--- Module creation code ---*/ jpayne@68: #if CYTHON_PEP489_MULTI_PHASE_INIT jpayne@68: __pyx_m = __pyx_pyinit_module; jpayne@68: Py_INCREF(__pyx_m); jpayne@68: #else jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: __pyx_m = Py_InitModule4("libcbgzf", __pyx_methods, __pyx_k_Functions_that_read_and_write_bl, 0, PYTHON_API_VERSION); Py_XINCREF(__pyx_m); jpayne@68: if (unlikely(!__pyx_m)) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: #elif CYTHON_USE_MODULE_STATE jpayne@68: __pyx_t_1 = PyModule_Create(&__pyx_moduledef); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: { jpayne@68: int add_module_result = PyState_AddModule(__pyx_t_1, &__pyx_moduledef); jpayne@68: __pyx_t_1 = 0; /* transfer ownership from __pyx_t_1 to "libcbgzf" pseudovariable */ jpayne@68: if (unlikely((add_module_result < 0))) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: pystate_addmodule_run = 1; jpayne@68: } jpayne@68: #else jpayne@68: __pyx_m = PyModule_Create(&__pyx_moduledef); jpayne@68: if (unlikely(!__pyx_m)) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: #endif jpayne@68: #endif jpayne@68: CYTHON_UNUSED_VAR(__pyx_t_1); jpayne@68: __pyx_d = PyModule_GetDict(__pyx_m); if (unlikely(!__pyx_d)) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: Py_INCREF(__pyx_d); jpayne@68: __pyx_b = __Pyx_PyImport_AddModuleRef(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_b)) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: __pyx_cython_runtime = __Pyx_PyImport_AddModuleRef((const char *) "cython_runtime"); if (unlikely(!__pyx_cython_runtime)) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: if (PyObject_SetAttrString(__pyx_m, "__builtins__", __pyx_b) < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: #if CYTHON_REFNANNY jpayne@68: __Pyx_RefNanny = __Pyx_RefNannyImportAPI("refnanny"); jpayne@68: if (!__Pyx_RefNanny) { jpayne@68: PyErr_Clear(); jpayne@68: __Pyx_RefNanny = __Pyx_RefNannyImportAPI("Cython.Runtime.refnanny"); jpayne@68: if (!__Pyx_RefNanny) jpayne@68: Py_FatalError("failed to import 'refnanny' module"); jpayne@68: } jpayne@68: #endif jpayne@68: __Pyx_RefNannySetupContext("__Pyx_PyMODINIT_FUNC PyInit_libcbgzf(void)", 0); jpayne@68: if (__Pyx_check_binary_version(__PYX_LIMITED_VERSION_HEX, __Pyx_get_runtime_version(), CYTHON_COMPILING_IN_LIMITED_API) < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: #ifdef __Pxy_PyFrame_Initialize_Offsets jpayne@68: __Pxy_PyFrame_Initialize_Offsets(); jpayne@68: #endif jpayne@68: __pyx_empty_tuple = PyTuple_New(0); if (unlikely(!__pyx_empty_tuple)) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: __pyx_empty_bytes = PyBytes_FromStringAndSize("", 0); if (unlikely(!__pyx_empty_bytes)) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: __pyx_empty_unicode = PyUnicode_FromStringAndSize("", 0); if (unlikely(!__pyx_empty_unicode)) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: #ifdef __Pyx_CyFunction_USED jpayne@68: if (__pyx_CyFunction_init(__pyx_m) < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: #endif jpayne@68: #ifdef __Pyx_FusedFunction_USED jpayne@68: if (__pyx_FusedFunction_init(__pyx_m) < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: #endif jpayne@68: #ifdef __Pyx_Coroutine_USED jpayne@68: if (__pyx_Coroutine_init(__pyx_m) < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: #endif jpayne@68: #ifdef __Pyx_Generator_USED jpayne@68: if (__pyx_Generator_init(__pyx_m) < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: #endif jpayne@68: #ifdef __Pyx_AsyncGen_USED jpayne@68: if (__pyx_AsyncGen_init(__pyx_m) < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: #endif jpayne@68: #ifdef __Pyx_StopAsyncIteration_USED jpayne@68: if (__pyx_StopAsyncIteration_init(__pyx_m) < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: #endif jpayne@68: /*--- Library function declarations ---*/ jpayne@68: /*--- Threads initialization code ---*/ jpayne@68: #if defined(WITH_THREAD) && PY_VERSION_HEX < 0x030700F0 && defined(__PYX_FORCE_INIT_THREADS) && __PYX_FORCE_INIT_THREADS jpayne@68: PyEval_InitThreads(); jpayne@68: #endif jpayne@68: /*--- Initialize various global constants etc. ---*/ jpayne@68: if (__Pyx_InitConstants() < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: stringtab_initialized = 1; jpayne@68: if (__Pyx_InitGlobals() < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: #if PY_MAJOR_VERSION < 3 && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT) jpayne@68: if (__Pyx_init_sys_getdefaultencoding_params() < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: #endif jpayne@68: if (__pyx_module_is_main_pysam__libcbgzf) { jpayne@68: if (PyObject_SetAttr(__pyx_m, __pyx_n_s_name, __pyx_n_s_main) < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: } jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: { jpayne@68: PyObject *modules = PyImport_GetModuleDict(); if (unlikely(!modules)) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: if (!PyDict_GetItemString(modules, "pysam.libcbgzf")) { jpayne@68: if (unlikely((PyDict_SetItemString(modules, "pysam.libcbgzf", __pyx_m) < 0))) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: /*--- Builtin init code ---*/ jpayne@68: if (__Pyx_InitCachedBuiltins() < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: /*--- Constants init code ---*/ jpayne@68: if (__Pyx_InitCachedConstants() < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: /*--- Global type/function init code ---*/ jpayne@68: (void)__Pyx_modinit_global_init_code(); jpayne@68: (void)__Pyx_modinit_variable_export_code(); jpayne@68: (void)__Pyx_modinit_function_export_code(); jpayne@68: if (unlikely((__Pyx_modinit_type_init_code() < 0))) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: if (unlikely((__Pyx_modinit_type_import_code() < 0))) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: (void)__Pyx_modinit_variable_import_code(); jpayne@68: if (unlikely((__Pyx_modinit_function_import_code() < 0))) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: /*--- Execution code ---*/ jpayne@68: #if defined(__Pyx_Generator_USED) || defined(__Pyx_Coroutine_USED) jpayne@68: if (__Pyx_patch_abc() < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: #endif jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":9 jpayne@68: * # based on Python 3.5's gzip module jpayne@68: * jpayne@68: * import io # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * from libc.stdint cimport int8_t, int16_t, int32_t, int64_t jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_ImportDottedModule(__pyx_n_s_io, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 9, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: if (PyDict_SetItem(__pyx_d, __pyx_n_s_io, __pyx_t_2) < 0) __PYX_ERR(0, 9, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":24 jpayne@68: * bgzf_tell, bgzf_getline, kstring_t, BGZF jpayne@68: * jpayne@68: * __all__ = ["BGZFile"] # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_2 = PyList_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 24, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_INCREF(__pyx_n_u_BGZFile); jpayne@68: __Pyx_GIVEREF(__pyx_n_u_BGZFile); jpayne@68: if (__Pyx_PyList_SET_ITEM(__pyx_t_2, 0, __pyx_n_u_BGZFile)) __PYX_ERR(0, 24, __pyx_L1_error); jpayne@68: if (PyDict_SetItem(__pyx_d, __pyx_n_s_all, __pyx_t_2) < 0) __PYX_ERR(0, 24, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":27 jpayne@68: * jpayne@68: * jpayne@68: * BUFFER_SIZE = io.DEFAULT_BUFFER_SIZE # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * jpayne@68: */ jpayne@68: __Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_io); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 27, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_DEFAULT_BUFFER_SIZE); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 27, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: if (PyDict_SetItem(__pyx_d, __pyx_n_s_BUFFER_SIZE, __pyx_t_3) < 0) __PYX_ERR(0, 27, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":66 jpayne@68: * self.close() jpayne@68: * jpayne@68: * def write(self, data): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("write() on closed BGZFile object") jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_8libcbgzf_7BGZFile_5write, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_BGZFile_write, NULL, __pyx_n_s_pysam_libcbgzf, __pyx_d, ((PyObject *)__pyx_codeobj__23)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 66, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: if (__Pyx_SetItemOnTypeDict((PyObject *)__pyx_ptype_5pysam_8libcbgzf_BGZFile, __pyx_n_s_write, __pyx_t_3) < 0) __PYX_ERR(0, 66, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: PyType_Modified(__pyx_ptype_5pysam_8libcbgzf_BGZFile); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":86 jpayne@68: * return length jpayne@68: * jpayne@68: * def read(self, size=-1): # <<<<<<<<<<<<<< jpayne@68: * cdef ssize_t read_size jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_8libcbgzf_7BGZFile_7read, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_BGZFile_read, NULL, __pyx_n_s_pysam_libcbgzf, __pyx_d, ((PyObject *)__pyx_codeobj__25)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 86, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __Pyx_CyFunction_SetDefaultsTuple(__pyx_t_3, __pyx_tuple__26); jpayne@68: if (__Pyx_SetItemOnTypeDict((PyObject *)__pyx_ptype_5pysam_8libcbgzf_BGZFile, __pyx_n_s_read, __pyx_t_3) < 0) __PYX_ERR(0, 86, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: PyType_Modified(__pyx_ptype_5pysam_8libcbgzf_BGZFile); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":126 jpayne@68: * return self.bgzf == NULL jpayne@68: * jpayne@68: * def close(self): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * return jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_8libcbgzf_7BGZFile_9close, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_BGZFile_close, NULL, __pyx_n_s_pysam_libcbgzf, __pyx_d, ((PyObject *)__pyx_codeobj__28)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 126, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: if (__Pyx_SetItemOnTypeDict((PyObject *)__pyx_ptype_5pysam_8libcbgzf_BGZFile, __pyx_n_s_close, __pyx_t_3) < 0) __PYX_ERR(0, 126, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: PyType_Modified(__pyx_ptype_5pysam_8libcbgzf_BGZFile); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":142 jpayne@68: * raise IOError('Error closing BGZFile object') jpayne@68: * jpayne@68: * def __enter__(self): # <<<<<<<<<<<<<< jpayne@68: * return self jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_8libcbgzf_7BGZFile_11__enter__, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_BGZFile___enter, NULL, __pyx_n_s_pysam_libcbgzf, __pyx_d, ((PyObject *)__pyx_codeobj__30)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 142, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: if (__Pyx_SetItemOnTypeDict((PyObject *)__pyx_ptype_5pysam_8libcbgzf_BGZFile, __pyx_n_s_enter, __pyx_t_3) < 0) __PYX_ERR(0, 142, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: PyType_Modified(__pyx_ptype_5pysam_8libcbgzf_BGZFile); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":145 jpayne@68: * return self jpayne@68: * jpayne@68: * def __exit__(self, type, value, tb): # <<<<<<<<<<<<<< jpayne@68: * self.close() jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_8libcbgzf_7BGZFile_13__exit__, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_BGZFile___exit, NULL, __pyx_n_s_pysam_libcbgzf, __pyx_d, ((PyObject *)__pyx_codeobj__32)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 145, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: if (__Pyx_SetItemOnTypeDict((PyObject *)__pyx_ptype_5pysam_8libcbgzf_BGZFile, __pyx_n_s_exit, __pyx_t_3) < 0) __PYX_ERR(0, 145, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: PyType_Modified(__pyx_ptype_5pysam_8libcbgzf_BGZFile); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":148 jpayne@68: * self.close() jpayne@68: * jpayne@68: * def flush(self): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * return jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_8libcbgzf_7BGZFile_15flush, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_BGZFile_flush, NULL, __pyx_n_s_pysam_libcbgzf, __pyx_d, ((PyObject *)__pyx_codeobj__33)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 148, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: if (__Pyx_SetItemOnTypeDict((PyObject *)__pyx_ptype_5pysam_8libcbgzf_BGZFile, __pyx_n_s_flush, __pyx_t_3) < 0) __PYX_ERR(0, 148, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: PyType_Modified(__pyx_ptype_5pysam_8libcbgzf_BGZFile); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":155 jpayne@68: * raise IOError('Error flushing BGZFile object') jpayne@68: * jpayne@68: * def fileno(self): # <<<<<<<<<<<<<< jpayne@68: * """Invoke the underlying file object's fileno() method. jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_8libcbgzf_7BGZFile_17fileno, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_BGZFile_fileno, NULL, __pyx_n_s_pysam_libcbgzf, __pyx_d, ((PyObject *)__pyx_codeobj__34)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 155, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: if (__Pyx_SetItemOnTypeDict((PyObject *)__pyx_ptype_5pysam_8libcbgzf_BGZFile, __pyx_n_s_fileno, __pyx_t_3) < 0) __PYX_ERR(0, 155, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: PyType_Modified(__pyx_ptype_5pysam_8libcbgzf_BGZFile); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":163 jpayne@68: * raise AttributeError('fileno') jpayne@68: * jpayne@68: * def rewind(self): # <<<<<<<<<<<<<< jpayne@68: * '''Return the uncompressed stream file position indicator to the jpayne@68: * beginning of the file''' jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_8libcbgzf_7BGZFile_19rewind, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_BGZFile_rewind, NULL, __pyx_n_s_pysam_libcbgzf, __pyx_d, ((PyObject *)__pyx_codeobj__35)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 163, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: if (__Pyx_SetItemOnTypeDict((PyObject *)__pyx_ptype_5pysam_8libcbgzf_BGZFile, __pyx_n_s_rewind, __pyx_t_3) < 0) __PYX_ERR(0, 163, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: PyType_Modified(__pyx_ptype_5pysam_8libcbgzf_BGZFile); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":173 jpayne@68: * raise IOError('Error seeking BGZFFile object') jpayne@68: * jpayne@68: * def readable(self): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("readable() on closed BGZFile object") jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_8libcbgzf_7BGZFile_21readable, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_BGZFile_readable, NULL, __pyx_n_s_pysam_libcbgzf, __pyx_d, ((PyObject *)__pyx_codeobj__36)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 173, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: if (__Pyx_SetItemOnTypeDict((PyObject *)__pyx_ptype_5pysam_8libcbgzf_BGZFile, __pyx_n_s_readable, __pyx_t_3) < 0) __PYX_ERR(0, 173, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: PyType_Modified(__pyx_ptype_5pysam_8libcbgzf_BGZFile); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":178 jpayne@68: * return self.bgzf != NULL and not self.bgzf.is_write jpayne@68: * jpayne@68: * def writable(self): # <<<<<<<<<<<<<< jpayne@68: * return self.bgzf != NULL and self.bgzf.is_write jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_8libcbgzf_7BGZFile_23writable, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_BGZFile_writable, NULL, __pyx_n_s_pysam_libcbgzf, __pyx_d, ((PyObject *)__pyx_codeobj__37)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 178, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: if (__Pyx_SetItemOnTypeDict((PyObject *)__pyx_ptype_5pysam_8libcbgzf_BGZFile, __pyx_n_s_writable, __pyx_t_3) < 0) __PYX_ERR(0, 178, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: PyType_Modified(__pyx_ptype_5pysam_8libcbgzf_BGZFile); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":181 jpayne@68: * return self.bgzf != NULL and self.bgzf.is_write jpayne@68: * jpayne@68: * def seekable(self): # <<<<<<<<<<<<<< jpayne@68: * return True jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_8libcbgzf_7BGZFile_25seekable, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_BGZFile_seekable, NULL, __pyx_n_s_pysam_libcbgzf, __pyx_d, ((PyObject *)__pyx_codeobj__38)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 181, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: if (__Pyx_SetItemOnTypeDict((PyObject *)__pyx_ptype_5pysam_8libcbgzf_BGZFile, __pyx_n_s_seekable, __pyx_t_3) < 0) __PYX_ERR(0, 181, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: PyType_Modified(__pyx_ptype_5pysam_8libcbgzf_BGZFile); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":184 jpayne@68: * return True jpayne@68: * jpayne@68: * def tell(self): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_8libcbgzf_7BGZFile_27tell, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_BGZFile_tell, NULL, __pyx_n_s_pysam_libcbgzf, __pyx_d, ((PyObject *)__pyx_codeobj__40)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 184, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: if (__Pyx_SetItemOnTypeDict((PyObject *)__pyx_ptype_5pysam_8libcbgzf_BGZFile, __pyx_n_s_tell, __pyx_t_3) < 0) __PYX_ERR(0, 184, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: PyType_Modified(__pyx_ptype_5pysam_8libcbgzf_BGZFile); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":193 jpayne@68: * return off jpayne@68: * jpayne@68: * def seek(self, offset, whence=io.SEEK_SET): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("seek() on closed BGZFile object") jpayne@68: */ jpayne@68: __Pyx_GetModuleGlobalName(__pyx_t_3, __pyx_n_s_io); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 193, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_SEEK_SET); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 193, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: __pyx_k__18 = __pyx_t_2; jpayne@68: __Pyx_GIVEREF(__pyx_t_2); jpayne@68: __pyx_t_2 = 0; jpayne@68: __Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_io); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 193, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_SEEK_SET); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 193, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 193, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_GIVEREF(__pyx_t_3); jpayne@68: if (__Pyx_PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_t_3)) __PYX_ERR(0, 193, __pyx_L1_error); jpayne@68: __pyx_t_3 = 0; jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_8libcbgzf_7BGZFile_29seek, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_BGZFile_seek, NULL, __pyx_n_s_pysam_libcbgzf, __pyx_d, ((PyObject *)__pyx_codeobj__42)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 193, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __Pyx_CyFunction_SetDefaultsTuple(__pyx_t_3, __pyx_t_2); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: if (__Pyx_SetItemOnTypeDict((PyObject *)__pyx_ptype_5pysam_8libcbgzf_BGZFile, __pyx_n_s_seek, __pyx_t_3) < 0) __PYX_ERR(0, 193, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: PyType_Modified(__pyx_ptype_5pysam_8libcbgzf_BGZFile); jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":205 jpayne@68: * return off jpayne@68: * jpayne@68: * def readline(self, size=-1): # <<<<<<<<<<<<<< jpayne@68: * if not self.bgzf: jpayne@68: * raise ValueError("readline() on closed BGZFile object") jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_8libcbgzf_7BGZFile_31readline, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_BGZFile_readline, NULL, __pyx_n_s_pysam_libcbgzf, __pyx_d, ((PyObject *)__pyx_codeobj__44)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 205, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __Pyx_CyFunction_SetDefaultsTuple(__pyx_t_3, __pyx_tuple__26); jpayne@68: if (__Pyx_SetItemOnTypeDict((PyObject *)__pyx_ptype_5pysam_8libcbgzf_BGZFile, __pyx_n_s_readline, __pyx_t_3) < 0) __PYX_ERR(0, 205, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: PyType_Modified(__pyx_ptype_5pysam_8libcbgzf_BGZFile); jpayne@68: jpayne@68: /* "(tree fragment)":1 jpayne@68: * def __reduce_cython__(self): # <<<<<<<<<<<<<< jpayne@68: * raise TypeError, "self.bgzf cannot be converted to a Python object for pickling" jpayne@68: * def __setstate_cython__(self, __pyx_state): jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_8libcbgzf_7BGZFile_37__reduce_cython__, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_BGZFile___reduce_cython, NULL, __pyx_n_s_pysam_libcbgzf, __pyx_d, ((PyObject *)__pyx_codeobj__45)); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: if (PyDict_SetItem(__pyx_d, __pyx_n_s_reduce_cython, __pyx_t_3) < 0) __PYX_ERR(1, 1, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: jpayne@68: /* "(tree fragment)":3 jpayne@68: * def __reduce_cython__(self): jpayne@68: * raise TypeError, "self.bgzf cannot be converted to a Python object for pickling" jpayne@68: * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<< jpayne@68: * raise TypeError, "self.bgzf cannot be converted to a Python object for pickling" jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_8libcbgzf_7BGZFile_39__setstate_cython__, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_BGZFile___setstate_cython, NULL, __pyx_n_s_pysam_libcbgzf, __pyx_d, ((PyObject *)__pyx_codeobj__47)); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 3, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: if (PyDict_SetItem(__pyx_d, __pyx_n_s_setstate_cython, __pyx_t_3) < 0) __PYX_ERR(1, 3, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: jpayne@68: /* "pysam/libcbgzf.pyx":1 jpayne@68: * # cython: language_level=3 # <<<<<<<<<<<<<< jpayne@68: * """Functions that read and write block gzipped files. jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: if (PyDict_SetItem(__pyx_d, __pyx_n_s_test, __pyx_t_3) < 0) __PYX_ERR(0, 1, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: jpayne@68: /*--- Wrapped vars code ---*/ jpayne@68: jpayne@68: goto __pyx_L0; jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_2); jpayne@68: __Pyx_XDECREF(__pyx_t_3); jpayne@68: if (__pyx_m) { jpayne@68: if (__pyx_d && stringtab_initialized) { jpayne@68: __Pyx_AddTraceback("init pysam.libcbgzf", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: } jpayne@68: #if !CYTHON_USE_MODULE_STATE jpayne@68: Py_CLEAR(__pyx_m); jpayne@68: #else jpayne@68: Py_DECREF(__pyx_m); jpayne@68: if (pystate_addmodule_run) { jpayne@68: PyObject *tp, *value, *tb; jpayne@68: PyErr_Fetch(&tp, &value, &tb); jpayne@68: PyState_RemoveModule(&__pyx_moduledef); jpayne@68: PyErr_Restore(tp, value, tb); jpayne@68: } jpayne@68: #endif jpayne@68: } else if (!PyErr_Occurred()) { jpayne@68: PyErr_SetString(PyExc_ImportError, "init pysam.libcbgzf"); jpayne@68: } jpayne@68: __pyx_L0:; jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: #if CYTHON_PEP489_MULTI_PHASE_INIT jpayne@68: return (__pyx_m != NULL) ? 0 : -1; jpayne@68: #elif PY_MAJOR_VERSION >= 3 jpayne@68: return __pyx_m; jpayne@68: #else jpayne@68: return; jpayne@68: #endif jpayne@68: } jpayne@68: /* #### Code section: cleanup_globals ### */ jpayne@68: /* #### Code section: cleanup_module ### */ jpayne@68: /* #### Code section: main_method ### */ jpayne@68: /* #### Code section: utility_code_pragmas ### */ jpayne@68: #ifdef _MSC_VER jpayne@68: #pragma warning( push ) jpayne@68: /* Warning 4127: conditional expression is constant jpayne@68: * Cython uses constant conditional expressions to allow in inline functions to be optimized at jpayne@68: * compile-time, so this warning is not useful jpayne@68: */ jpayne@68: #pragma warning( disable : 4127 ) jpayne@68: #endif jpayne@68: jpayne@68: jpayne@68: jpayne@68: /* #### Code section: utility_code_def ### */ jpayne@68: jpayne@68: /* --- Runtime support code --- */ jpayne@68: /* Refnanny */ jpayne@68: #if CYTHON_REFNANNY jpayne@68: static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) { jpayne@68: PyObject *m = NULL, *p = NULL; jpayne@68: void *r = NULL; jpayne@68: m = PyImport_ImportModule(modname); jpayne@68: if (!m) goto end; jpayne@68: p = PyObject_GetAttrString(m, "RefNannyAPI"); jpayne@68: if (!p) goto end; jpayne@68: r = PyLong_AsVoidPtr(p); jpayne@68: end: jpayne@68: Py_XDECREF(p); jpayne@68: Py_XDECREF(m); jpayne@68: return (__Pyx_RefNannyAPIStruct *)r; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyErrExceptionMatches */ jpayne@68: #if CYTHON_FAST_THREAD_STATE jpayne@68: static int __Pyx_PyErr_ExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) { jpayne@68: Py_ssize_t i, n; jpayne@68: n = PyTuple_GET_SIZE(tuple); jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: for (i=0; i= 0x030C00A6 jpayne@68: PyObject *current_exception = tstate->current_exception; jpayne@68: if (unlikely(!current_exception)) return 0; jpayne@68: exc_type = (PyObject*) Py_TYPE(current_exception); jpayne@68: if (exc_type == err) return 1; jpayne@68: #else jpayne@68: exc_type = tstate->curexc_type; jpayne@68: if (exc_type == err) return 1; jpayne@68: if (unlikely(!exc_type)) return 0; jpayne@68: #endif jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: Py_INCREF(exc_type); jpayne@68: #endif jpayne@68: if (unlikely(PyTuple_Check(err))) { jpayne@68: result = __Pyx_PyErr_ExceptionMatchesTuple(exc_type, err); jpayne@68: } else { jpayne@68: result = __Pyx_PyErr_GivenExceptionMatches(exc_type, err); jpayne@68: } jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: Py_DECREF(exc_type); jpayne@68: #endif jpayne@68: return result; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyErrFetchRestore */ jpayne@68: #if CYTHON_FAST_THREAD_STATE jpayne@68: static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { jpayne@68: #if PY_VERSION_HEX >= 0x030C00A6 jpayne@68: PyObject *tmp_value; jpayne@68: assert(type == NULL || (value != NULL && type == (PyObject*) Py_TYPE(value))); jpayne@68: if (value) { jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: if (unlikely(((PyBaseExceptionObject*) value)->traceback != tb)) jpayne@68: #endif jpayne@68: PyException_SetTraceback(value, tb); jpayne@68: } jpayne@68: tmp_value = tstate->current_exception; jpayne@68: tstate->current_exception = value; jpayne@68: Py_XDECREF(tmp_value); jpayne@68: Py_XDECREF(type); jpayne@68: Py_XDECREF(tb); jpayne@68: #else jpayne@68: PyObject *tmp_type, *tmp_value, *tmp_tb; jpayne@68: tmp_type = tstate->curexc_type; jpayne@68: tmp_value = tstate->curexc_value; jpayne@68: tmp_tb = tstate->curexc_traceback; jpayne@68: tstate->curexc_type = type; jpayne@68: tstate->curexc_value = value; jpayne@68: tstate->curexc_traceback = tb; jpayne@68: Py_XDECREF(tmp_type); jpayne@68: Py_XDECREF(tmp_value); jpayne@68: Py_XDECREF(tmp_tb); jpayne@68: #endif jpayne@68: } jpayne@68: static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { jpayne@68: #if PY_VERSION_HEX >= 0x030C00A6 jpayne@68: PyObject* exc_value; jpayne@68: exc_value = tstate->current_exception; jpayne@68: tstate->current_exception = 0; jpayne@68: *value = exc_value; jpayne@68: *type = NULL; jpayne@68: *tb = NULL; jpayne@68: if (exc_value) { jpayne@68: *type = (PyObject*) Py_TYPE(exc_value); jpayne@68: Py_INCREF(*type); jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: *tb = ((PyBaseExceptionObject*) exc_value)->traceback; jpayne@68: Py_XINCREF(*tb); jpayne@68: #else jpayne@68: *tb = PyException_GetTraceback(exc_value); jpayne@68: #endif jpayne@68: } jpayne@68: #else jpayne@68: *type = tstate->curexc_type; jpayne@68: *value = tstate->curexc_value; jpayne@68: *tb = tstate->curexc_traceback; jpayne@68: tstate->curexc_type = 0; jpayne@68: tstate->curexc_value = 0; jpayne@68: tstate->curexc_traceback = 0; jpayne@68: #endif jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectGetAttrStr */ jpayne@68: #if CYTHON_USE_TYPE_SLOTS jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) { jpayne@68: PyTypeObject* tp = Py_TYPE(obj); jpayne@68: if (likely(tp->tp_getattro)) jpayne@68: return tp->tp_getattro(obj, attr_name); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(tp->tp_getattr)) jpayne@68: return tp->tp_getattr(obj, PyString_AS_STRING(attr_name)); jpayne@68: #endif jpayne@68: return PyObject_GetAttr(obj, attr_name); jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectGetAttrStrNoError */ jpayne@68: #if __PYX_LIMITED_VERSION_HEX < 0x030d00A1 jpayne@68: static void __Pyx_PyObject_GetAttrStr_ClearAttributeError(void) { jpayne@68: __Pyx_PyThreadState_declare jpayne@68: __Pyx_PyThreadState_assign jpayne@68: if (likely(__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError))) jpayne@68: __Pyx_PyErr_Clear(); jpayne@68: } jpayne@68: #endif jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name) { jpayne@68: PyObject *result; jpayne@68: #if __PYX_LIMITED_VERSION_HEX >= 0x030d00A1 jpayne@68: (void) PyObject_GetOptionalAttr(obj, attr_name, &result); jpayne@68: return result; jpayne@68: #else jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_TYPE_SLOTS && PY_VERSION_HEX >= 0x030700B1 jpayne@68: PyTypeObject* tp = Py_TYPE(obj); jpayne@68: if (likely(tp->tp_getattro == PyObject_GenericGetAttr)) { jpayne@68: return _PyObject_GenericGetAttrWithDict(obj, attr_name, NULL, 1); jpayne@68: } jpayne@68: #endif jpayne@68: result = __Pyx_PyObject_GetAttrStr(obj, attr_name); jpayne@68: if (unlikely(!result)) { jpayne@68: __Pyx_PyObject_GetAttrStr_ClearAttributeError(); jpayne@68: } jpayne@68: return result; jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: /* GetBuiltinName */ jpayne@68: static PyObject *__Pyx_GetBuiltinName(PyObject *name) { jpayne@68: PyObject* result = __Pyx_PyObject_GetAttrStrNoError(__pyx_b, name); jpayne@68: if (unlikely(!result) && !PyErr_Occurred()) { jpayne@68: PyErr_Format(PyExc_NameError, jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: "name '%U' is not defined", name); jpayne@68: #else jpayne@68: "name '%.200s' is not defined", PyString_AS_STRING(name)); jpayne@68: #endif jpayne@68: } jpayne@68: return result; jpayne@68: } jpayne@68: jpayne@68: /* TupleAndListFromArray */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: static CYTHON_INLINE void __Pyx_copy_object_array(PyObject *const *CYTHON_RESTRICT src, PyObject** CYTHON_RESTRICT dest, Py_ssize_t length) { jpayne@68: PyObject *v; jpayne@68: Py_ssize_t i; jpayne@68: for (i = 0; i < length; i++) { jpayne@68: v = dest[i] = src[i]; jpayne@68: Py_INCREF(v); jpayne@68: } jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject * jpayne@68: __Pyx_PyTuple_FromArray(PyObject *const *src, Py_ssize_t n) jpayne@68: { jpayne@68: PyObject *res; jpayne@68: if (n <= 0) { jpayne@68: Py_INCREF(__pyx_empty_tuple); jpayne@68: return __pyx_empty_tuple; jpayne@68: } jpayne@68: res = PyTuple_New(n); jpayne@68: if (unlikely(res == NULL)) return NULL; jpayne@68: __Pyx_copy_object_array(src, ((PyTupleObject*)res)->ob_item, n); jpayne@68: return res; jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject * jpayne@68: __Pyx_PyList_FromArray(PyObject *const *src, Py_ssize_t n) jpayne@68: { jpayne@68: PyObject *res; jpayne@68: if (n <= 0) { jpayne@68: return PyList_New(0); jpayne@68: } jpayne@68: res = PyList_New(n); jpayne@68: if (unlikely(res == NULL)) return NULL; jpayne@68: __Pyx_copy_object_array(src, ((PyListObject*)res)->ob_item, n); jpayne@68: return res; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* BytesEquals */ jpayne@68: static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) { jpayne@68: #if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: return PyObject_RichCompareBool(s1, s2, equals); jpayne@68: #else jpayne@68: if (s1 == s2) { jpayne@68: return (equals == Py_EQ); jpayne@68: } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) { jpayne@68: const char *ps1, *ps2; jpayne@68: Py_ssize_t length = PyBytes_GET_SIZE(s1); jpayne@68: if (length != PyBytes_GET_SIZE(s2)) jpayne@68: return (equals == Py_NE); jpayne@68: ps1 = PyBytes_AS_STRING(s1); jpayne@68: ps2 = PyBytes_AS_STRING(s2); jpayne@68: if (ps1[0] != ps2[0]) { jpayne@68: return (equals == Py_NE); jpayne@68: } else if (length == 1) { jpayne@68: return (equals == Py_EQ); jpayne@68: } else { jpayne@68: int result; jpayne@68: #if CYTHON_USE_UNICODE_INTERNALS && (PY_VERSION_HEX < 0x030B0000) jpayne@68: Py_hash_t hash1, hash2; jpayne@68: hash1 = ((PyBytesObject*)s1)->ob_shash; jpayne@68: hash2 = ((PyBytesObject*)s2)->ob_shash; jpayne@68: if (hash1 != hash2 && hash1 != -1 && hash2 != -1) { jpayne@68: return (equals == Py_NE); jpayne@68: } jpayne@68: #endif jpayne@68: result = memcmp(ps1, ps2, (size_t)length); jpayne@68: return (equals == Py_EQ) ? (result == 0) : (result != 0); jpayne@68: } jpayne@68: } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) { jpayne@68: return (equals == Py_NE); jpayne@68: } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) { jpayne@68: return (equals == Py_NE); jpayne@68: } else { jpayne@68: int result; jpayne@68: PyObject* py_result = PyObject_RichCompare(s1, s2, equals); jpayne@68: if (!py_result) jpayne@68: return -1; jpayne@68: result = __Pyx_PyObject_IsTrue(py_result); jpayne@68: Py_DECREF(py_result); jpayne@68: return result; jpayne@68: } jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: /* UnicodeEquals */ jpayne@68: static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) { jpayne@68: #if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: return PyObject_RichCompareBool(s1, s2, equals); jpayne@68: #else jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: PyObject* owned_ref = NULL; jpayne@68: #endif jpayne@68: int s1_is_unicode, s2_is_unicode; jpayne@68: if (s1 == s2) { jpayne@68: goto return_eq; jpayne@68: } jpayne@68: s1_is_unicode = PyUnicode_CheckExact(s1); jpayne@68: s2_is_unicode = PyUnicode_CheckExact(s2); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if ((s1_is_unicode & (!s2_is_unicode)) && PyString_CheckExact(s2)) { jpayne@68: owned_ref = PyUnicode_FromObject(s2); jpayne@68: if (unlikely(!owned_ref)) jpayne@68: return -1; jpayne@68: s2 = owned_ref; jpayne@68: s2_is_unicode = 1; jpayne@68: } else if ((s2_is_unicode & (!s1_is_unicode)) && PyString_CheckExact(s1)) { jpayne@68: owned_ref = PyUnicode_FromObject(s1); jpayne@68: if (unlikely(!owned_ref)) jpayne@68: return -1; jpayne@68: s1 = owned_ref; jpayne@68: s1_is_unicode = 1; jpayne@68: } else if (((!s2_is_unicode) & (!s1_is_unicode))) { jpayne@68: return __Pyx_PyBytes_Equals(s1, s2, equals); jpayne@68: } jpayne@68: #endif jpayne@68: if (s1_is_unicode & s2_is_unicode) { jpayne@68: Py_ssize_t length; jpayne@68: int kind; jpayne@68: void *data1, *data2; jpayne@68: if (unlikely(__Pyx_PyUnicode_READY(s1) < 0) || unlikely(__Pyx_PyUnicode_READY(s2) < 0)) jpayne@68: return -1; jpayne@68: length = __Pyx_PyUnicode_GET_LENGTH(s1); jpayne@68: if (length != __Pyx_PyUnicode_GET_LENGTH(s2)) { jpayne@68: goto return_ne; jpayne@68: } jpayne@68: #if CYTHON_USE_UNICODE_INTERNALS jpayne@68: { jpayne@68: Py_hash_t hash1, hash2; jpayne@68: #if CYTHON_PEP393_ENABLED jpayne@68: hash1 = ((PyASCIIObject*)s1)->hash; jpayne@68: hash2 = ((PyASCIIObject*)s2)->hash; jpayne@68: #else jpayne@68: hash1 = ((PyUnicodeObject*)s1)->hash; jpayne@68: hash2 = ((PyUnicodeObject*)s2)->hash; jpayne@68: #endif jpayne@68: if (hash1 != hash2 && hash1 != -1 && hash2 != -1) { jpayne@68: goto return_ne; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: kind = __Pyx_PyUnicode_KIND(s1); jpayne@68: if (kind != __Pyx_PyUnicode_KIND(s2)) { jpayne@68: goto return_ne; jpayne@68: } jpayne@68: data1 = __Pyx_PyUnicode_DATA(s1); jpayne@68: data2 = __Pyx_PyUnicode_DATA(s2); jpayne@68: if (__Pyx_PyUnicode_READ(kind, data1, 0) != __Pyx_PyUnicode_READ(kind, data2, 0)) { jpayne@68: goto return_ne; jpayne@68: } else if (length == 1) { jpayne@68: goto return_eq; jpayne@68: } else { jpayne@68: int result = memcmp(data1, data2, (size_t)(length * kind)); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: Py_XDECREF(owned_ref); jpayne@68: #endif jpayne@68: return (equals == Py_EQ) ? (result == 0) : (result != 0); jpayne@68: } jpayne@68: } else if ((s1 == Py_None) & s2_is_unicode) { jpayne@68: goto return_ne; jpayne@68: } else if ((s2 == Py_None) & s1_is_unicode) { jpayne@68: goto return_ne; jpayne@68: } else { jpayne@68: int result; jpayne@68: PyObject* py_result = PyObject_RichCompare(s1, s2, equals); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: Py_XDECREF(owned_ref); jpayne@68: #endif jpayne@68: if (!py_result) jpayne@68: return -1; jpayne@68: result = __Pyx_PyObject_IsTrue(py_result); jpayne@68: Py_DECREF(py_result); jpayne@68: return result; jpayne@68: } jpayne@68: return_eq: jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: Py_XDECREF(owned_ref); jpayne@68: #endif jpayne@68: return (equals == Py_EQ); jpayne@68: return_ne: jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: Py_XDECREF(owned_ref); jpayne@68: #endif jpayne@68: return (equals == Py_NE); jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: /* fastcall */ jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: static CYTHON_INLINE PyObject * __Pyx_GetKwValue_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues, PyObject *s) jpayne@68: { jpayne@68: Py_ssize_t i, n = PyTuple_GET_SIZE(kwnames); jpayne@68: for (i = 0; i < n; i++) jpayne@68: { jpayne@68: if (s == PyTuple_GET_ITEM(kwnames, i)) return kwvalues[i]; jpayne@68: } jpayne@68: for (i = 0; i < n; i++) jpayne@68: { jpayne@68: int eq = __Pyx_PyUnicode_Equals(s, PyTuple_GET_ITEM(kwnames, i), Py_EQ); jpayne@68: if (unlikely(eq != 0)) { jpayne@68: if (unlikely(eq < 0)) return NULL; jpayne@68: return kwvalues[i]; jpayne@68: } jpayne@68: } jpayne@68: return NULL; jpayne@68: } jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 jpayne@68: CYTHON_UNUSED static PyObject *__Pyx_KwargsAsDict_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues) { jpayne@68: Py_ssize_t i, nkwargs = PyTuple_GET_SIZE(kwnames); jpayne@68: PyObject *dict; jpayne@68: dict = PyDict_New(); jpayne@68: if (unlikely(!dict)) jpayne@68: return NULL; jpayne@68: for (i=0; i= 3 jpayne@68: "%s() got multiple values for keyword argument '%U'", func_name, kw_name); jpayne@68: #else jpayne@68: "%s() got multiple values for keyword argument '%s'", func_name, jpayne@68: PyString_AsString(kw_name)); jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: /* ParseKeywords */ jpayne@68: static int __Pyx_ParseOptionalKeywords( jpayne@68: PyObject *kwds, jpayne@68: PyObject *const *kwvalues, jpayne@68: PyObject **argnames[], jpayne@68: PyObject *kwds2, jpayne@68: PyObject *values[], jpayne@68: Py_ssize_t num_pos_args, jpayne@68: const char* function_name) jpayne@68: { jpayne@68: PyObject *key = 0, *value = 0; jpayne@68: Py_ssize_t pos = 0; jpayne@68: PyObject*** name; jpayne@68: PyObject*** first_kw_arg = argnames + num_pos_args; jpayne@68: int kwds_is_tuple = CYTHON_METH_FASTCALL && likely(PyTuple_Check(kwds)); jpayne@68: while (1) { jpayne@68: Py_XDECREF(key); key = NULL; jpayne@68: Py_XDECREF(value); value = NULL; jpayne@68: if (kwds_is_tuple) { jpayne@68: Py_ssize_t size; jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: size = PyTuple_GET_SIZE(kwds); jpayne@68: #else jpayne@68: size = PyTuple_Size(kwds); jpayne@68: if (size < 0) goto bad; jpayne@68: #endif jpayne@68: if (pos >= size) break; jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: key = __Pyx_PySequence_ITEM(kwds, pos); jpayne@68: if (!key) goto bad; jpayne@68: #elif CYTHON_ASSUME_SAFE_MACROS jpayne@68: key = PyTuple_GET_ITEM(kwds, pos); jpayne@68: #else jpayne@68: key = PyTuple_GetItem(kwds, pos); jpayne@68: if (!key) goto bad; jpayne@68: #endif jpayne@68: value = kwvalues[pos]; jpayne@68: pos++; jpayne@68: } jpayne@68: else jpayne@68: { jpayne@68: if (!PyDict_Next(kwds, &pos, &key, &value)) break; jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: Py_INCREF(key); jpayne@68: #endif jpayne@68: } jpayne@68: name = first_kw_arg; jpayne@68: while (*name && (**name != key)) name++; jpayne@68: if (*name) { jpayne@68: values[name-argnames] = value; jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: Py_INCREF(value); jpayne@68: Py_DECREF(key); jpayne@68: #endif jpayne@68: key = NULL; jpayne@68: value = NULL; jpayne@68: continue; jpayne@68: } jpayne@68: #if !CYTHON_AVOID_BORROWED_REFS jpayne@68: Py_INCREF(key); jpayne@68: #endif jpayne@68: Py_INCREF(value); jpayne@68: name = first_kw_arg; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(PyString_Check(key))) { jpayne@68: while (*name) { jpayne@68: if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) jpayne@68: && _PyString_Eq(**name, key)) { jpayne@68: values[name-argnames] = value; jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: value = NULL; jpayne@68: #endif jpayne@68: break; jpayne@68: } jpayne@68: name++; jpayne@68: } jpayne@68: if (*name) continue; jpayne@68: else { jpayne@68: PyObject*** argname = argnames; jpayne@68: while (argname != first_kw_arg) { jpayne@68: if ((**argname == key) || ( jpayne@68: (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key)) jpayne@68: && _PyString_Eq(**argname, key))) { jpayne@68: goto arg_passed_twice; jpayne@68: } jpayne@68: argname++; jpayne@68: } jpayne@68: } jpayne@68: } else jpayne@68: #endif jpayne@68: if (likely(PyUnicode_Check(key))) { jpayne@68: while (*name) { jpayne@68: int cmp = ( jpayne@68: #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 jpayne@68: (__Pyx_PyUnicode_GET_LENGTH(**name) != __Pyx_PyUnicode_GET_LENGTH(key)) ? 1 : jpayne@68: #endif jpayne@68: PyUnicode_Compare(**name, key) jpayne@68: ); jpayne@68: if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; jpayne@68: if (cmp == 0) { jpayne@68: values[name-argnames] = value; jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: value = NULL; jpayne@68: #endif jpayne@68: break; jpayne@68: } jpayne@68: name++; jpayne@68: } jpayne@68: if (*name) continue; jpayne@68: else { jpayne@68: PyObject*** argname = argnames; jpayne@68: while (argname != first_kw_arg) { jpayne@68: int cmp = (**argname == key) ? 0 : jpayne@68: #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 jpayne@68: (__Pyx_PyUnicode_GET_LENGTH(**argname) != __Pyx_PyUnicode_GET_LENGTH(key)) ? 1 : jpayne@68: #endif jpayne@68: PyUnicode_Compare(**argname, key); jpayne@68: if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; jpayne@68: if (cmp == 0) goto arg_passed_twice; jpayne@68: argname++; jpayne@68: } jpayne@68: } jpayne@68: } else jpayne@68: goto invalid_keyword_type; jpayne@68: if (kwds2) { jpayne@68: if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; jpayne@68: } else { jpayne@68: goto invalid_keyword; jpayne@68: } jpayne@68: } jpayne@68: Py_XDECREF(key); jpayne@68: Py_XDECREF(value); jpayne@68: return 0; jpayne@68: arg_passed_twice: jpayne@68: __Pyx_RaiseDoubleKeywordsError(function_name, key); jpayne@68: goto bad; jpayne@68: invalid_keyword_type: jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() keywords must be strings", function_name); jpayne@68: goto bad; jpayne@68: invalid_keyword: jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() got an unexpected keyword argument '%.200s'", jpayne@68: function_name, PyString_AsString(key)); jpayne@68: #else jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%s() got an unexpected keyword argument '%U'", jpayne@68: function_name, key); jpayne@68: #endif jpayne@68: bad: jpayne@68: Py_XDECREF(key); jpayne@68: Py_XDECREF(value); jpayne@68: return -1; jpayne@68: } jpayne@68: jpayne@68: /* RaiseArgTupleInvalid */ jpayne@68: static void __Pyx_RaiseArgtupleInvalid( jpayne@68: const char* func_name, jpayne@68: int exact, jpayne@68: Py_ssize_t num_min, jpayne@68: Py_ssize_t num_max, jpayne@68: Py_ssize_t num_found) jpayne@68: { jpayne@68: Py_ssize_t num_expected; jpayne@68: const char *more_or_less; jpayne@68: if (num_found < num_min) { jpayne@68: num_expected = num_min; jpayne@68: more_or_less = "at least"; jpayne@68: } else { jpayne@68: num_expected = num_max; jpayne@68: more_or_less = "at most"; jpayne@68: } jpayne@68: if (exact) { jpayne@68: more_or_less = "exactly"; jpayne@68: } jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@68: func_name, more_or_less, num_expected, jpayne@68: (num_expected == 1) ? "" : "s", num_found); jpayne@68: } jpayne@68: jpayne@68: /* PyFunctionFastCall */ jpayne@68: #if CYTHON_FAST_PYCALL && !CYTHON_VECTORCALL jpayne@68: static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na, jpayne@68: PyObject *globals) { jpayne@68: PyFrameObject *f; jpayne@68: PyThreadState *tstate = __Pyx_PyThreadState_Current; jpayne@68: PyObject **fastlocals; jpayne@68: Py_ssize_t i; jpayne@68: PyObject *result; jpayne@68: assert(globals != NULL); jpayne@68: /* XXX Perhaps we should create a specialized jpayne@68: PyFrame_New() that doesn't take locals, but does jpayne@68: take builtins without sanity checking them. jpayne@68: */ jpayne@68: assert(tstate != NULL); jpayne@68: f = PyFrame_New(tstate, co, globals, NULL); jpayne@68: if (f == NULL) { jpayne@68: return NULL; jpayne@68: } jpayne@68: fastlocals = __Pyx_PyFrame_GetLocalsplus(f); jpayne@68: for (i = 0; i < na; i++) { jpayne@68: Py_INCREF(*args); jpayne@68: fastlocals[i] = *args++; jpayne@68: } jpayne@68: result = PyEval_EvalFrameEx(f,0); jpayne@68: ++tstate->recursion_depth; jpayne@68: Py_DECREF(f); jpayne@68: --tstate->recursion_depth; jpayne@68: return result; jpayne@68: } jpayne@68: static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs) { jpayne@68: PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func); jpayne@68: PyObject *globals = PyFunction_GET_GLOBALS(func); jpayne@68: PyObject *argdefs = PyFunction_GET_DEFAULTS(func); jpayne@68: PyObject *closure; jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: PyObject *kwdefs; jpayne@68: #endif jpayne@68: PyObject *kwtuple, **k; jpayne@68: PyObject **d; jpayne@68: Py_ssize_t nd; jpayne@68: Py_ssize_t nk; jpayne@68: PyObject *result; jpayne@68: assert(kwargs == NULL || PyDict_Check(kwargs)); jpayne@68: nk = kwargs ? PyDict_Size(kwargs) : 0; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) { jpayne@68: return NULL; jpayne@68: } jpayne@68: #else jpayne@68: if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) { jpayne@68: return NULL; jpayne@68: } jpayne@68: #endif jpayne@68: if ( jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: co->co_kwonlyargcount == 0 && jpayne@68: #endif jpayne@68: likely(kwargs == NULL || nk == 0) && jpayne@68: co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) { jpayne@68: if (argdefs == NULL && co->co_argcount == nargs) { jpayne@68: result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals); jpayne@68: goto done; jpayne@68: } jpayne@68: else if (nargs == 0 && argdefs != NULL jpayne@68: && co->co_argcount == Py_SIZE(argdefs)) { jpayne@68: /* function called with no arguments, but all parameters have jpayne@68: a default value: use default values as arguments .*/ jpayne@68: args = &PyTuple_GET_ITEM(argdefs, 0); jpayne@68: result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals); jpayne@68: goto done; jpayne@68: } jpayne@68: } jpayne@68: if (kwargs != NULL) { jpayne@68: Py_ssize_t pos, i; jpayne@68: kwtuple = PyTuple_New(2 * nk); jpayne@68: if (kwtuple == NULL) { jpayne@68: result = NULL; jpayne@68: goto done; jpayne@68: } jpayne@68: k = &PyTuple_GET_ITEM(kwtuple, 0); jpayne@68: pos = i = 0; jpayne@68: while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) { jpayne@68: Py_INCREF(k[i]); jpayne@68: Py_INCREF(k[i+1]); jpayne@68: i += 2; jpayne@68: } jpayne@68: nk = i / 2; jpayne@68: } jpayne@68: else { jpayne@68: kwtuple = NULL; jpayne@68: k = NULL; jpayne@68: } jpayne@68: closure = PyFunction_GET_CLOSURE(func); jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: kwdefs = PyFunction_GET_KW_DEFAULTS(func); jpayne@68: #endif jpayne@68: if (argdefs != NULL) { jpayne@68: d = &PyTuple_GET_ITEM(argdefs, 0); jpayne@68: nd = Py_SIZE(argdefs); jpayne@68: } jpayne@68: else { jpayne@68: d = NULL; jpayne@68: nd = 0; jpayne@68: } jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL, jpayne@68: args, (int)nargs, jpayne@68: k, (int)nk, jpayne@68: d, (int)nd, kwdefs, closure); jpayne@68: #else jpayne@68: result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL, jpayne@68: args, (int)nargs, jpayne@68: k, (int)nk, jpayne@68: d, (int)nd, closure); jpayne@68: #endif jpayne@68: Py_XDECREF(kwtuple); jpayne@68: done: jpayne@68: Py_LeaveRecursiveCall(); jpayne@68: return result; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectCall */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { jpayne@68: PyObject *result; jpayne@68: ternaryfunc call = Py_TYPE(func)->tp_call; jpayne@68: if (unlikely(!call)) jpayne@68: return PyObject_Call(func, arg, kw); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) jpayne@68: return NULL; jpayne@68: #else jpayne@68: if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) jpayne@68: return NULL; jpayne@68: #endif jpayne@68: result = (*call)(func, arg, kw); jpayne@68: Py_LeaveRecursiveCall(); jpayne@68: if (unlikely(!result) && unlikely(!PyErr_Occurred())) { jpayne@68: PyErr_SetString( jpayne@68: PyExc_SystemError, jpayne@68: "NULL result without error in PyObject_Call"); jpayne@68: } jpayne@68: return result; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectCallMethO */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) { jpayne@68: PyObject *self, *result; jpayne@68: PyCFunction cfunc; jpayne@68: cfunc = __Pyx_CyOrPyCFunction_GET_FUNCTION(func); jpayne@68: self = __Pyx_CyOrPyCFunction_GET_SELF(func); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) jpayne@68: return NULL; jpayne@68: #else jpayne@68: if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) jpayne@68: return NULL; jpayne@68: #endif jpayne@68: result = cfunc(self, arg); jpayne@68: Py_LeaveRecursiveCall(); jpayne@68: if (unlikely(!result) && unlikely(!PyErr_Occurred())) { jpayne@68: PyErr_SetString( jpayne@68: PyExc_SystemError, jpayne@68: "NULL result without error in PyObject_Call"); jpayne@68: } jpayne@68: return result; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectFastCall */ jpayne@68: #if PY_VERSION_HEX < 0x03090000 || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static PyObject* __Pyx_PyObject_FastCall_fallback(PyObject *func, PyObject **args, size_t nargs, PyObject *kwargs) { jpayne@68: PyObject *argstuple; jpayne@68: PyObject *result = 0; jpayne@68: size_t i; jpayne@68: argstuple = PyTuple_New((Py_ssize_t)nargs); jpayne@68: if (unlikely(!argstuple)) return NULL; jpayne@68: for (i = 0; i < nargs; i++) { jpayne@68: Py_INCREF(args[i]); jpayne@68: if (__Pyx_PyTuple_SET_ITEM(argstuple, (Py_ssize_t)i, args[i]) < 0) goto bad; jpayne@68: } jpayne@68: result = __Pyx_PyObject_Call(func, argstuple, kwargs); jpayne@68: bad: jpayne@68: Py_DECREF(argstuple); jpayne@68: return result; jpayne@68: } jpayne@68: #endif jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_FastCallDict(PyObject *func, PyObject **args, size_t _nargs, PyObject *kwargs) { jpayne@68: Py_ssize_t nargs = __Pyx_PyVectorcall_NARGS(_nargs); jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: if (nargs == 0 && kwargs == NULL) { jpayne@68: if (__Pyx_CyOrPyCFunction_Check(func) && likely( __Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_NOARGS)) jpayne@68: return __Pyx_PyObject_CallMethO(func, NULL); jpayne@68: } jpayne@68: else if (nargs == 1 && kwargs == NULL) { jpayne@68: if (__Pyx_CyOrPyCFunction_Check(func) && likely( __Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_O)) jpayne@68: return __Pyx_PyObject_CallMethO(func, args[0]); jpayne@68: } jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x030800B1 jpayne@68: #if CYTHON_FAST_PYCCALL jpayne@68: if (PyCFunction_Check(func)) { jpayne@68: if (kwargs) { jpayne@68: return _PyCFunction_FastCallDict(func, args, nargs, kwargs); jpayne@68: } else { jpayne@68: return _PyCFunction_FastCallKeywords(func, args, nargs, NULL); jpayne@68: } jpayne@68: } jpayne@68: #if PY_VERSION_HEX >= 0x030700A1 jpayne@68: if (!kwargs && __Pyx_IS_TYPE(func, &PyMethodDescr_Type)) { jpayne@68: return _PyMethodDescr_FastCallKeywords(func, args, nargs, NULL); jpayne@68: } jpayne@68: #endif jpayne@68: #endif jpayne@68: #if CYTHON_FAST_PYCALL jpayne@68: if (PyFunction_Check(func)) { jpayne@68: return __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs); jpayne@68: } jpayne@68: #endif jpayne@68: #endif jpayne@68: if (kwargs == NULL) { jpayne@68: #if CYTHON_VECTORCALL jpayne@68: #if PY_VERSION_HEX < 0x03090000 jpayne@68: vectorcallfunc f = _PyVectorcall_Function(func); jpayne@68: #else jpayne@68: vectorcallfunc f = PyVectorcall_Function(func); jpayne@68: #endif jpayne@68: if (f) { jpayne@68: return f(func, args, (size_t)nargs, NULL); jpayne@68: } jpayne@68: #elif defined(__Pyx_CyFunction_USED) && CYTHON_BACKPORT_VECTORCALL jpayne@68: if (__Pyx_CyFunction_CheckExact(func)) { jpayne@68: __pyx_vectorcallfunc f = __Pyx_CyFunction_func_vectorcall(func); jpayne@68: if (f) return f(func, args, (size_t)nargs, NULL); jpayne@68: } jpayne@68: #endif jpayne@68: } jpayne@68: if (nargs == 0) { jpayne@68: return __Pyx_PyObject_Call(func, __pyx_empty_tuple, kwargs); jpayne@68: } jpayne@68: #if PY_VERSION_HEX >= 0x03090000 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: return PyObject_VectorcallDict(func, args, (size_t)nargs, kwargs); jpayne@68: #else jpayne@68: return __Pyx_PyObject_FastCall_fallback(func, args, (size_t)nargs, kwargs); jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: /* PyObjectCallOneArg */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { jpayne@68: PyObject *args[2] = {NULL, arg}; jpayne@68: return __Pyx_PyObject_FastCall(func, args+1, 1 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET); jpayne@68: } jpayne@68: jpayne@68: /* RaiseException */ jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { jpayne@68: __Pyx_PyThreadState_declare jpayne@68: CYTHON_UNUSED_VAR(cause); jpayne@68: Py_XINCREF(type); jpayne@68: if (!value || value == Py_None) jpayne@68: value = NULL; jpayne@68: else jpayne@68: Py_INCREF(value); jpayne@68: if (!tb || tb == Py_None) jpayne@68: tb = NULL; jpayne@68: else { jpayne@68: Py_INCREF(tb); jpayne@68: if (!PyTraceBack_Check(tb)) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "raise: arg 3 must be a traceback or None"); jpayne@68: goto raise_error; jpayne@68: } jpayne@68: } jpayne@68: if (PyType_Check(type)) { jpayne@68: #if CYTHON_COMPILING_IN_PYPY jpayne@68: if (!value) { jpayne@68: Py_INCREF(Py_None); jpayne@68: value = Py_None; jpayne@68: } jpayne@68: #endif jpayne@68: PyErr_NormalizeException(&type, &value, &tb); jpayne@68: } else { jpayne@68: if (value) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "instance exception may not have a separate value"); jpayne@68: goto raise_error; jpayne@68: } jpayne@68: value = type; jpayne@68: type = (PyObject*) Py_TYPE(type); jpayne@68: Py_INCREF(type); jpayne@68: if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "raise: exception class must be a subclass of BaseException"); jpayne@68: goto raise_error; jpayne@68: } jpayne@68: } jpayne@68: __Pyx_PyThreadState_assign jpayne@68: __Pyx_ErrRestore(type, value, tb); jpayne@68: return; jpayne@68: raise_error: jpayne@68: Py_XDECREF(value); jpayne@68: Py_XDECREF(type); jpayne@68: Py_XDECREF(tb); jpayne@68: return; jpayne@68: } jpayne@68: #else jpayne@68: static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { jpayne@68: PyObject* owned_instance = NULL; jpayne@68: if (tb == Py_None) { jpayne@68: tb = 0; jpayne@68: } else if (tb && !PyTraceBack_Check(tb)) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "raise: arg 3 must be a traceback or None"); jpayne@68: goto bad; jpayne@68: } jpayne@68: if (value == Py_None) jpayne@68: value = 0; jpayne@68: if (PyExceptionInstance_Check(type)) { jpayne@68: if (value) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "instance exception may not have a separate value"); jpayne@68: goto bad; jpayne@68: } jpayne@68: value = type; jpayne@68: type = (PyObject*) Py_TYPE(value); jpayne@68: } else if (PyExceptionClass_Check(type)) { jpayne@68: PyObject *instance_class = NULL; jpayne@68: if (value && PyExceptionInstance_Check(value)) { jpayne@68: instance_class = (PyObject*) Py_TYPE(value); jpayne@68: if (instance_class != type) { jpayne@68: int is_subclass = PyObject_IsSubclass(instance_class, type); jpayne@68: if (!is_subclass) { jpayne@68: instance_class = NULL; jpayne@68: } else if (unlikely(is_subclass == -1)) { jpayne@68: goto bad; jpayne@68: } else { jpayne@68: type = instance_class; jpayne@68: } jpayne@68: } jpayne@68: } jpayne@68: if (!instance_class) { jpayne@68: PyObject *args; jpayne@68: if (!value) jpayne@68: args = PyTuple_New(0); jpayne@68: else if (PyTuple_Check(value)) { jpayne@68: Py_INCREF(value); jpayne@68: args = value; jpayne@68: } else jpayne@68: args = PyTuple_Pack(1, value); jpayne@68: if (!args) jpayne@68: goto bad; jpayne@68: owned_instance = PyObject_Call(type, args, NULL); jpayne@68: Py_DECREF(args); jpayne@68: if (!owned_instance) jpayne@68: goto bad; jpayne@68: value = owned_instance; jpayne@68: if (!PyExceptionInstance_Check(value)) { jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "calling %R should have returned an instance of " jpayne@68: "BaseException, not %R", jpayne@68: type, Py_TYPE(value)); jpayne@68: goto bad; jpayne@68: } jpayne@68: } jpayne@68: } else { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "raise: exception class must be a subclass of BaseException"); jpayne@68: goto bad; jpayne@68: } jpayne@68: if (cause) { jpayne@68: PyObject *fixed_cause; jpayne@68: if (cause == Py_None) { jpayne@68: fixed_cause = NULL; jpayne@68: } else if (PyExceptionClass_Check(cause)) { jpayne@68: fixed_cause = PyObject_CallObject(cause, NULL); jpayne@68: if (fixed_cause == NULL) jpayne@68: goto bad; jpayne@68: } else if (PyExceptionInstance_Check(cause)) { jpayne@68: fixed_cause = cause; jpayne@68: Py_INCREF(fixed_cause); jpayne@68: } else { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "exception causes must derive from " jpayne@68: "BaseException"); jpayne@68: goto bad; jpayne@68: } jpayne@68: PyException_SetCause(value, fixed_cause); jpayne@68: } jpayne@68: PyErr_SetObject(type, value); jpayne@68: if (tb) { jpayne@68: #if PY_VERSION_HEX >= 0x030C00A6 jpayne@68: PyException_SetTraceback(value, tb); jpayne@68: #elif CYTHON_FAST_THREAD_STATE jpayne@68: PyThreadState *tstate = __Pyx_PyThreadState_Current; jpayne@68: PyObject* tmp_tb = tstate->curexc_traceback; jpayne@68: if (tb != tmp_tb) { jpayne@68: Py_INCREF(tb); jpayne@68: tstate->curexc_traceback = tb; jpayne@68: Py_XDECREF(tmp_tb); jpayne@68: } jpayne@68: #else jpayne@68: PyObject *tmp_type, *tmp_value, *tmp_tb; jpayne@68: PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb); jpayne@68: Py_INCREF(tb); jpayne@68: PyErr_Restore(tmp_type, tmp_value, tb); jpayne@68: Py_XDECREF(tmp_tb); jpayne@68: #endif jpayne@68: } jpayne@68: bad: jpayne@68: Py_XDECREF(owned_instance); jpayne@68: return; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* WriteUnraisableException */ jpayne@68: static void __Pyx_WriteUnraisable(const char *name, int clineno, jpayne@68: int lineno, const char *filename, jpayne@68: int full_traceback, int nogil) { jpayne@68: PyObject *old_exc, *old_val, *old_tb; jpayne@68: PyObject *ctx; jpayne@68: __Pyx_PyThreadState_declare jpayne@68: #ifdef WITH_THREAD jpayne@68: PyGILState_STATE state; jpayne@68: if (nogil) jpayne@68: state = PyGILState_Ensure(); jpayne@68: else state = (PyGILState_STATE)0; jpayne@68: #endif jpayne@68: CYTHON_UNUSED_VAR(clineno); jpayne@68: CYTHON_UNUSED_VAR(lineno); jpayne@68: CYTHON_UNUSED_VAR(filename); jpayne@68: CYTHON_MAYBE_UNUSED_VAR(nogil); jpayne@68: __Pyx_PyThreadState_assign jpayne@68: __Pyx_ErrFetch(&old_exc, &old_val, &old_tb); jpayne@68: if (full_traceback) { jpayne@68: Py_XINCREF(old_exc); jpayne@68: Py_XINCREF(old_val); jpayne@68: Py_XINCREF(old_tb); jpayne@68: __Pyx_ErrRestore(old_exc, old_val, old_tb); jpayne@68: PyErr_PrintEx(0); jpayne@68: } jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: ctx = PyString_FromString(name); jpayne@68: #else jpayne@68: ctx = PyUnicode_FromString(name); jpayne@68: #endif jpayne@68: __Pyx_ErrRestore(old_exc, old_val, old_tb); jpayne@68: if (!ctx) { jpayne@68: PyErr_WriteUnraisable(Py_None); jpayne@68: } else { jpayne@68: PyErr_WriteUnraisable(ctx); jpayne@68: Py_DECREF(ctx); jpayne@68: } jpayne@68: #ifdef WITH_THREAD jpayne@68: if (nogil) jpayne@68: PyGILState_Release(state); jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: /* Import */ jpayne@68: static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { jpayne@68: PyObject *module = 0; jpayne@68: PyObject *empty_dict = 0; jpayne@68: PyObject *empty_list = 0; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: PyObject *py_import; jpayne@68: py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); jpayne@68: if (unlikely(!py_import)) jpayne@68: goto bad; jpayne@68: if (!from_list) { jpayne@68: empty_list = PyList_New(0); jpayne@68: if (unlikely(!empty_list)) jpayne@68: goto bad; jpayne@68: from_list = empty_list; jpayne@68: } jpayne@68: #endif jpayne@68: empty_dict = PyDict_New(); jpayne@68: if (unlikely(!empty_dict)) jpayne@68: goto bad; jpayne@68: { jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: if (level == -1) { jpayne@68: if (strchr(__Pyx_MODULE_NAME, '.') != NULL) { jpayne@68: module = PyImport_ImportModuleLevelObject( jpayne@68: name, __pyx_d, empty_dict, from_list, 1); jpayne@68: if (unlikely(!module)) { jpayne@68: if (unlikely(!PyErr_ExceptionMatches(PyExc_ImportError))) jpayne@68: goto bad; jpayne@68: PyErr_Clear(); jpayne@68: } jpayne@68: } jpayne@68: level = 0; jpayne@68: } jpayne@68: #endif jpayne@68: if (!module) { jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: PyObject *py_level = PyInt_FromLong(level); jpayne@68: if (unlikely(!py_level)) jpayne@68: goto bad; jpayne@68: module = PyObject_CallFunctionObjArgs(py_import, jpayne@68: name, __pyx_d, empty_dict, from_list, py_level, (PyObject *)NULL); jpayne@68: Py_DECREF(py_level); jpayne@68: #else jpayne@68: module = PyImport_ImportModuleLevelObject( jpayne@68: name, __pyx_d, empty_dict, from_list, level); jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: bad: jpayne@68: Py_XDECREF(empty_dict); jpayne@68: Py_XDECREF(empty_list); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: Py_XDECREF(py_import); jpayne@68: #endif jpayne@68: return module; jpayne@68: } jpayne@68: jpayne@68: /* ImportDottedModule */ jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: static PyObject *__Pyx__ImportDottedModule_Error(PyObject *name, PyObject *parts_tuple, Py_ssize_t count) { jpayne@68: PyObject *partial_name = NULL, *slice = NULL, *sep = NULL; jpayne@68: if (unlikely(PyErr_Occurred())) { jpayne@68: PyErr_Clear(); jpayne@68: } jpayne@68: if (likely(PyTuple_GET_SIZE(parts_tuple) == count)) { jpayne@68: partial_name = name; jpayne@68: } else { jpayne@68: slice = PySequence_GetSlice(parts_tuple, 0, count); jpayne@68: if (unlikely(!slice)) jpayne@68: goto bad; jpayne@68: sep = PyUnicode_FromStringAndSize(".", 1); jpayne@68: if (unlikely(!sep)) jpayne@68: goto bad; jpayne@68: partial_name = PyUnicode_Join(sep, slice); jpayne@68: } jpayne@68: PyErr_Format( jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: PyExc_ImportError, jpayne@68: "No module named '%s'", PyString_AS_STRING(partial_name)); jpayne@68: #else jpayne@68: #if PY_VERSION_HEX >= 0x030600B1 jpayne@68: PyExc_ModuleNotFoundError, jpayne@68: #else jpayne@68: PyExc_ImportError, jpayne@68: #endif jpayne@68: "No module named '%U'", partial_name); jpayne@68: #endif jpayne@68: bad: jpayne@68: Py_XDECREF(sep); jpayne@68: Py_XDECREF(slice); jpayne@68: Py_XDECREF(partial_name); jpayne@68: return NULL; jpayne@68: } jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: static PyObject *__Pyx__ImportDottedModule_Lookup(PyObject *name) { jpayne@68: PyObject *imported_module; jpayne@68: #if PY_VERSION_HEX < 0x030700A1 || (CYTHON_COMPILING_IN_PYPY && PYPY_VERSION_NUM < 0x07030400) jpayne@68: PyObject *modules = PyImport_GetModuleDict(); jpayne@68: if (unlikely(!modules)) jpayne@68: return NULL; jpayne@68: imported_module = __Pyx_PyDict_GetItemStr(modules, name); jpayne@68: Py_XINCREF(imported_module); jpayne@68: #else jpayne@68: imported_module = PyImport_GetModule(name); jpayne@68: #endif jpayne@68: return imported_module; jpayne@68: } jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: static PyObject *__Pyx_ImportDottedModule_WalkParts(PyObject *module, PyObject *name, PyObject *parts_tuple) { jpayne@68: Py_ssize_t i, nparts; jpayne@68: nparts = PyTuple_GET_SIZE(parts_tuple); jpayne@68: for (i=1; i < nparts && module; i++) { jpayne@68: PyObject *part, *submodule; jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS jpayne@68: part = PyTuple_GET_ITEM(parts_tuple, i); jpayne@68: #else jpayne@68: part = PySequence_ITEM(parts_tuple, i); jpayne@68: #endif jpayne@68: submodule = __Pyx_PyObject_GetAttrStrNoError(module, part); jpayne@68: #if !(CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS) jpayne@68: Py_DECREF(part); jpayne@68: #endif jpayne@68: Py_DECREF(module); jpayne@68: module = submodule; jpayne@68: } jpayne@68: if (unlikely(!module)) { jpayne@68: return __Pyx__ImportDottedModule_Error(name, parts_tuple, i); jpayne@68: } jpayne@68: return module; jpayne@68: } jpayne@68: #endif jpayne@68: static PyObject *__Pyx__ImportDottedModule(PyObject *name, PyObject *parts_tuple) { jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: PyObject *module, *from_list, *star = __pyx_n_s__3; jpayne@68: CYTHON_UNUSED_VAR(parts_tuple); jpayne@68: from_list = PyList_New(1); jpayne@68: if (unlikely(!from_list)) jpayne@68: return NULL; jpayne@68: Py_INCREF(star); jpayne@68: PyList_SET_ITEM(from_list, 0, star); jpayne@68: module = __Pyx_Import(name, from_list, 0); jpayne@68: Py_DECREF(from_list); jpayne@68: return module; jpayne@68: #else jpayne@68: PyObject *imported_module; jpayne@68: PyObject *module = __Pyx_Import(name, NULL, 0); jpayne@68: if (!parts_tuple || unlikely(!module)) jpayne@68: return module; jpayne@68: imported_module = __Pyx__ImportDottedModule_Lookup(name); jpayne@68: if (likely(imported_module)) { jpayne@68: Py_DECREF(module); jpayne@68: return imported_module; jpayne@68: } jpayne@68: PyErr_Clear(); jpayne@68: return __Pyx_ImportDottedModule_WalkParts(module, name, parts_tuple); jpayne@68: #endif jpayne@68: } jpayne@68: static PyObject *__Pyx_ImportDottedModule(PyObject *name, PyObject *parts_tuple) { jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030400B1 jpayne@68: PyObject *module = __Pyx__ImportDottedModule_Lookup(name); jpayne@68: if (likely(module)) { jpayne@68: PyObject *spec = __Pyx_PyObject_GetAttrStrNoError(module, __pyx_n_s_spec); jpayne@68: if (likely(spec)) { jpayne@68: PyObject *unsafe = __Pyx_PyObject_GetAttrStrNoError(spec, __pyx_n_s_initializing); jpayne@68: if (likely(!unsafe || !__Pyx_PyObject_IsTrue(unsafe))) { jpayne@68: Py_DECREF(spec); jpayne@68: spec = NULL; jpayne@68: } jpayne@68: Py_XDECREF(unsafe); jpayne@68: } jpayne@68: if (likely(!spec)) { jpayne@68: PyErr_Clear(); jpayne@68: return module; jpayne@68: } jpayne@68: Py_DECREF(spec); jpayne@68: Py_DECREF(module); jpayne@68: } else if (PyErr_Occurred()) { jpayne@68: PyErr_Clear(); jpayne@68: } jpayne@68: #endif jpayne@68: return __Pyx__ImportDottedModule(name, parts_tuple); jpayne@68: } jpayne@68: jpayne@68: /* PyDictVersioning */ jpayne@68: #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS jpayne@68: static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj) { jpayne@68: PyObject *dict = Py_TYPE(obj)->tp_dict; jpayne@68: return likely(dict) ? __PYX_GET_DICT_VERSION(dict) : 0; jpayne@68: } jpayne@68: static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj) { jpayne@68: PyObject **dictptr = NULL; jpayne@68: Py_ssize_t offset = Py_TYPE(obj)->tp_dictoffset; jpayne@68: if (offset) { jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: dictptr = (likely(offset > 0)) ? (PyObject **) ((char *)obj + offset) : _PyObject_GetDictPtr(obj); jpayne@68: #else jpayne@68: dictptr = _PyObject_GetDictPtr(obj); jpayne@68: #endif jpayne@68: } jpayne@68: return (dictptr && *dictptr) ? __PYX_GET_DICT_VERSION(*dictptr) : 0; jpayne@68: } jpayne@68: static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version) { jpayne@68: PyObject *dict = Py_TYPE(obj)->tp_dict; jpayne@68: if (unlikely(!dict) || unlikely(tp_dict_version != __PYX_GET_DICT_VERSION(dict))) jpayne@68: return 0; jpayne@68: return obj_dict_version == __Pyx_get_object_dict_version(obj); jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* GetModuleGlobalName */ jpayne@68: #if CYTHON_USE_DICT_VERSIONS jpayne@68: static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value) jpayne@68: #else jpayne@68: static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name) jpayne@68: #endif jpayne@68: { jpayne@68: PyObject *result; jpayne@68: #if !CYTHON_AVOID_BORROWED_REFS jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && PY_VERSION_HEX < 0x030d0000 jpayne@68: result = _PyDict_GetItem_KnownHash(__pyx_d, name, ((PyASCIIObject *) name)->hash); jpayne@68: __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version) jpayne@68: if (likely(result)) { jpayne@68: return __Pyx_NewRef(result); jpayne@68: } else if (unlikely(PyErr_Occurred())) { jpayne@68: return NULL; jpayne@68: } jpayne@68: #elif CYTHON_COMPILING_IN_LIMITED_API jpayne@68: if (unlikely(!__pyx_m)) { jpayne@68: return NULL; jpayne@68: } jpayne@68: result = PyObject_GetAttr(__pyx_m, name); jpayne@68: if (likely(result)) { jpayne@68: return result; jpayne@68: } jpayne@68: #else jpayne@68: result = PyDict_GetItem(__pyx_d, name); jpayne@68: __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version) jpayne@68: if (likely(result)) { jpayne@68: return __Pyx_NewRef(result); jpayne@68: } jpayne@68: #endif jpayne@68: #else jpayne@68: result = PyObject_GetItem(__pyx_d, name); jpayne@68: __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version) jpayne@68: if (likely(result)) { jpayne@68: return __Pyx_NewRef(result); jpayne@68: } jpayne@68: PyErr_Clear(); jpayne@68: #endif jpayne@68: return __Pyx_GetBuiltinName(name); jpayne@68: } jpayne@68: jpayne@68: /* PyObjectCall2Args */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2) { jpayne@68: PyObject *args[3] = {NULL, arg1, arg2}; jpayne@68: return __Pyx_PyObject_FastCall(function, args+1, 2 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET); jpayne@68: } jpayne@68: jpayne@68: /* PyObjectGetMethod */ jpayne@68: static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method) { jpayne@68: PyObject *attr; jpayne@68: #if CYTHON_UNPACK_METHODS && CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_PYTYPE_LOOKUP jpayne@68: __Pyx_TypeName type_name; jpayne@68: PyTypeObject *tp = Py_TYPE(obj); jpayne@68: PyObject *descr; jpayne@68: descrgetfunc f = NULL; jpayne@68: PyObject **dictptr, *dict; jpayne@68: int meth_found = 0; jpayne@68: assert (*method == NULL); jpayne@68: if (unlikely(tp->tp_getattro != PyObject_GenericGetAttr)) { jpayne@68: attr = __Pyx_PyObject_GetAttrStr(obj, name); jpayne@68: goto try_unpack; jpayne@68: } jpayne@68: if (unlikely(tp->tp_dict == NULL) && unlikely(PyType_Ready(tp) < 0)) { jpayne@68: return 0; jpayne@68: } jpayne@68: descr = _PyType_Lookup(tp, name); jpayne@68: if (likely(descr != NULL)) { jpayne@68: Py_INCREF(descr); jpayne@68: #if defined(Py_TPFLAGS_METHOD_DESCRIPTOR) && Py_TPFLAGS_METHOD_DESCRIPTOR jpayne@68: if (__Pyx_PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_METHOD_DESCRIPTOR)) jpayne@68: #elif PY_MAJOR_VERSION >= 3 jpayne@68: #ifdef __Pyx_CyFunction_USED jpayne@68: if (likely(PyFunction_Check(descr) || __Pyx_IS_TYPE(descr, &PyMethodDescr_Type) || __Pyx_CyFunction_Check(descr))) jpayne@68: #else jpayne@68: if (likely(PyFunction_Check(descr) || __Pyx_IS_TYPE(descr, &PyMethodDescr_Type))) jpayne@68: #endif jpayne@68: #else jpayne@68: #ifdef __Pyx_CyFunction_USED jpayne@68: if (likely(PyFunction_Check(descr) || __Pyx_CyFunction_Check(descr))) jpayne@68: #else jpayne@68: if (likely(PyFunction_Check(descr))) jpayne@68: #endif jpayne@68: #endif jpayne@68: { jpayne@68: meth_found = 1; jpayne@68: } else { jpayne@68: f = Py_TYPE(descr)->tp_descr_get; jpayne@68: if (f != NULL && PyDescr_IsData(descr)) { jpayne@68: attr = f(descr, obj, (PyObject *)Py_TYPE(obj)); jpayne@68: Py_DECREF(descr); jpayne@68: goto try_unpack; jpayne@68: } jpayne@68: } jpayne@68: } jpayne@68: dictptr = _PyObject_GetDictPtr(obj); jpayne@68: if (dictptr != NULL && (dict = *dictptr) != NULL) { jpayne@68: Py_INCREF(dict); jpayne@68: attr = __Pyx_PyDict_GetItemStr(dict, name); jpayne@68: if (attr != NULL) { jpayne@68: Py_INCREF(attr); jpayne@68: Py_DECREF(dict); jpayne@68: Py_XDECREF(descr); jpayne@68: goto try_unpack; jpayne@68: } jpayne@68: Py_DECREF(dict); jpayne@68: } jpayne@68: if (meth_found) { jpayne@68: *method = descr; jpayne@68: return 1; jpayne@68: } jpayne@68: if (f != NULL) { jpayne@68: attr = f(descr, obj, (PyObject *)Py_TYPE(obj)); jpayne@68: Py_DECREF(descr); jpayne@68: goto try_unpack; jpayne@68: } jpayne@68: if (likely(descr != NULL)) { jpayne@68: *method = descr; jpayne@68: return 0; jpayne@68: } jpayne@68: type_name = __Pyx_PyType_GetName(tp); jpayne@68: PyErr_Format(PyExc_AttributeError, jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: "'" __Pyx_FMT_TYPENAME "' object has no attribute '%U'", jpayne@68: type_name, name); jpayne@68: #else jpayne@68: "'" __Pyx_FMT_TYPENAME "' object has no attribute '%.400s'", jpayne@68: type_name, PyString_AS_STRING(name)); jpayne@68: #endif jpayne@68: __Pyx_DECREF_TypeName(type_name); jpayne@68: return 0; jpayne@68: #else jpayne@68: attr = __Pyx_PyObject_GetAttrStr(obj, name); jpayne@68: goto try_unpack; jpayne@68: #endif jpayne@68: try_unpack: jpayne@68: #if CYTHON_UNPACK_METHODS jpayne@68: if (likely(attr) && PyMethod_Check(attr) && likely(PyMethod_GET_SELF(attr) == obj)) { jpayne@68: PyObject *function = PyMethod_GET_FUNCTION(attr); jpayne@68: Py_INCREF(function); jpayne@68: Py_DECREF(attr); jpayne@68: *method = function; jpayne@68: return 1; jpayne@68: } jpayne@68: #endif jpayne@68: *method = attr; jpayne@68: return 0; jpayne@68: } jpayne@68: jpayne@68: /* PyObjectCallMethod1 */ jpayne@68: #if !(CYTHON_VECTORCALL && __PYX_LIMITED_VERSION_HEX >= 0x030C00A2) jpayne@68: static PyObject* __Pyx__PyObject_CallMethod1(PyObject* method, PyObject* arg) { jpayne@68: PyObject *result = __Pyx_PyObject_CallOneArg(method, arg); jpayne@68: Py_DECREF(method); jpayne@68: return result; jpayne@68: } jpayne@68: #endif jpayne@68: static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg) { jpayne@68: #if CYTHON_VECTORCALL && __PYX_LIMITED_VERSION_HEX >= 0x030C00A2 jpayne@68: PyObject *args[2] = {obj, arg}; jpayne@68: (void) __Pyx_PyObject_GetMethod; jpayne@68: (void) __Pyx_PyObject_CallOneArg; jpayne@68: (void) __Pyx_PyObject_Call2Args; jpayne@68: return PyObject_VectorcallMethod(method_name, args, 2 | PY_VECTORCALL_ARGUMENTS_OFFSET, NULL); jpayne@68: #else jpayne@68: PyObject *method = NULL, *result; jpayne@68: int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method); jpayne@68: if (likely(is_method)) { jpayne@68: result = __Pyx_PyObject_Call2Args(method, obj, arg); jpayne@68: Py_DECREF(method); jpayne@68: return result; jpayne@68: } jpayne@68: if (unlikely(!method)) return NULL; jpayne@68: return __Pyx__PyObject_CallMethod1(method, arg); jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: /* StringJoin */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyBytes_Join(PyObject* sep, PyObject* values) { jpayne@68: (void) __Pyx_PyObject_CallMethod1; jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION < 3 jpayne@68: return _PyString_Join(sep, values); jpayne@68: #elif CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030d0000 jpayne@68: return _PyBytes_Join(sep, values); jpayne@68: #else jpayne@68: return __Pyx_PyObject_CallMethod1(sep, __pyx_n_s_join, values); jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: /* KeywordStringCheck */ jpayne@68: static int __Pyx_CheckKeywordStrings( jpayne@68: PyObject *kw, jpayne@68: const char* function_name, jpayne@68: int kw_allowed) jpayne@68: { jpayne@68: PyObject* key = 0; jpayne@68: Py_ssize_t pos = 0; jpayne@68: #if CYTHON_COMPILING_IN_PYPY jpayne@68: if (!kw_allowed && PyDict_Next(kw, &pos, &key, 0)) jpayne@68: goto invalid_keyword; jpayne@68: return 1; jpayne@68: #else jpayne@68: if (CYTHON_METH_FASTCALL && likely(PyTuple_Check(kw))) { jpayne@68: Py_ssize_t kwsize; jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: kwsize = PyTuple_GET_SIZE(kw); jpayne@68: #else jpayne@68: kwsize = PyTuple_Size(kw); jpayne@68: if (kwsize < 0) return 0; jpayne@68: #endif jpayne@68: if (unlikely(kwsize == 0)) jpayne@68: return 1; jpayne@68: if (!kw_allowed) { jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: key = PyTuple_GET_ITEM(kw, 0); jpayne@68: #else jpayne@68: key = PyTuple_GetItem(kw, pos); jpayne@68: if (!key) return 0; jpayne@68: #endif jpayne@68: goto invalid_keyword; jpayne@68: } jpayne@68: #if PY_VERSION_HEX < 0x03090000 jpayne@68: for (pos = 0; pos < kwsize; pos++) { jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: key = PyTuple_GET_ITEM(kw, pos); jpayne@68: #else jpayne@68: key = PyTuple_GetItem(kw, pos); jpayne@68: if (!key) return 0; jpayne@68: #endif jpayne@68: if (unlikely(!PyUnicode_Check(key))) jpayne@68: goto invalid_keyword_type; jpayne@68: } jpayne@68: #endif jpayne@68: return 1; jpayne@68: } jpayne@68: while (PyDict_Next(kw, &pos, &key, 0)) { jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (unlikely(!PyString_Check(key))) jpayne@68: #endif jpayne@68: if (unlikely(!PyUnicode_Check(key))) jpayne@68: goto invalid_keyword_type; jpayne@68: } jpayne@68: if (!kw_allowed && unlikely(key)) jpayne@68: goto invalid_keyword; jpayne@68: return 1; jpayne@68: invalid_keyword_type: jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() keywords must be strings", function_name); jpayne@68: return 0; jpayne@68: #endif jpayne@68: invalid_keyword: jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() got an unexpected keyword argument '%.200s'", jpayne@68: function_name, PyString_AsString(key)); jpayne@68: #else jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%s() got an unexpected keyword argument '%U'", jpayne@68: function_name, key); jpayne@68: #endif jpayne@68: return 0; jpayne@68: } jpayne@68: jpayne@68: /* FixUpExtensionType */ jpayne@68: #if CYTHON_USE_TYPE_SPECS jpayne@68: static int __Pyx_fix_up_extension_type_from_spec(PyType_Spec *spec, PyTypeObject *type) { jpayne@68: #if PY_VERSION_HEX > 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: CYTHON_UNUSED_VAR(spec); jpayne@68: CYTHON_UNUSED_VAR(type); jpayne@68: #else jpayne@68: const PyType_Slot *slot = spec->slots; jpayne@68: while (slot && slot->slot && slot->slot != Py_tp_members) jpayne@68: slot++; jpayne@68: if (slot && slot->slot == Py_tp_members) { jpayne@68: int changed = 0; jpayne@68: #if !(PY_VERSION_HEX <= 0x030900b1 && CYTHON_COMPILING_IN_CPYTHON) jpayne@68: const jpayne@68: #endif jpayne@68: PyMemberDef *memb = (PyMemberDef*) slot->pfunc; jpayne@68: while (memb && memb->name) { jpayne@68: if (memb->name[0] == '_' && memb->name[1] == '_') { jpayne@68: #if PY_VERSION_HEX < 0x030900b1 jpayne@68: if (strcmp(memb->name, "__weaklistoffset__") == 0) { jpayne@68: assert(memb->type == T_PYSSIZET); jpayne@68: assert(memb->flags == READONLY); jpayne@68: type->tp_weaklistoffset = memb->offset; jpayne@68: changed = 1; jpayne@68: } jpayne@68: else if (strcmp(memb->name, "__dictoffset__") == 0) { jpayne@68: assert(memb->type == T_PYSSIZET); jpayne@68: assert(memb->flags == READONLY); jpayne@68: type->tp_dictoffset = memb->offset; jpayne@68: changed = 1; jpayne@68: } jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: else if (strcmp(memb->name, "__vectorcalloffset__") == 0) { jpayne@68: assert(memb->type == T_PYSSIZET); jpayne@68: assert(memb->flags == READONLY); jpayne@68: #if PY_VERSION_HEX >= 0x030800b4 jpayne@68: type->tp_vectorcall_offset = memb->offset; jpayne@68: #else jpayne@68: type->tp_print = (printfunc) memb->offset; jpayne@68: #endif jpayne@68: changed = 1; jpayne@68: } jpayne@68: #endif jpayne@68: #else jpayne@68: if ((0)); jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX <= 0x030900b1 && CYTHON_COMPILING_IN_CPYTHON jpayne@68: else if (strcmp(memb->name, "__module__") == 0) { jpayne@68: PyObject *descr; jpayne@68: assert(memb->type == T_OBJECT); jpayne@68: assert(memb->flags == 0 || memb->flags == READONLY); jpayne@68: descr = PyDescr_NewMember(type, memb); jpayne@68: if (unlikely(!descr)) jpayne@68: return -1; jpayne@68: if (unlikely(PyDict_SetItem(type->tp_dict, PyDescr_NAME(descr), descr) < 0)) { jpayne@68: Py_DECREF(descr); jpayne@68: return -1; jpayne@68: } jpayne@68: Py_DECREF(descr); jpayne@68: changed = 1; jpayne@68: } jpayne@68: #endif jpayne@68: } jpayne@68: memb++; jpayne@68: } jpayne@68: if (changed) jpayne@68: PyType_Modified(type); jpayne@68: } jpayne@68: #endif jpayne@68: return 0; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectCallNoArg */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) { jpayne@68: PyObject *arg[2] = {NULL, NULL}; jpayne@68: return __Pyx_PyObject_FastCall(func, arg + 1, 0 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET); jpayne@68: } jpayne@68: jpayne@68: /* PyObjectCallMethod0 */ jpayne@68: static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name) { jpayne@68: PyObject *method = NULL, *result = NULL; jpayne@68: int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method); jpayne@68: if (likely(is_method)) { jpayne@68: result = __Pyx_PyObject_CallOneArg(method, obj); jpayne@68: Py_DECREF(method); jpayne@68: return result; jpayne@68: } jpayne@68: if (unlikely(!method)) goto bad; jpayne@68: result = __Pyx_PyObject_CallNoArg(method); jpayne@68: Py_DECREF(method); jpayne@68: bad: jpayne@68: return result; jpayne@68: } jpayne@68: jpayne@68: /* ValidateBasesTuple */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON || CYTHON_COMPILING_IN_LIMITED_API || CYTHON_USE_TYPE_SPECS jpayne@68: static int __Pyx_validate_bases_tuple(const char *type_name, Py_ssize_t dictoffset, PyObject *bases) { jpayne@68: Py_ssize_t i, n; jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: n = PyTuple_GET_SIZE(bases); jpayne@68: #else jpayne@68: n = PyTuple_Size(bases); jpayne@68: if (n < 0) return -1; jpayne@68: #endif jpayne@68: for (i = 1; i < n; i++) jpayne@68: { jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: PyObject *b0 = PySequence_GetItem(bases, i); jpayne@68: if (!b0) return -1; jpayne@68: #elif CYTHON_ASSUME_SAFE_MACROS jpayne@68: PyObject *b0 = PyTuple_GET_ITEM(bases, i); jpayne@68: #else jpayne@68: PyObject *b0 = PyTuple_GetItem(bases, i); jpayne@68: if (!b0) return -1; jpayne@68: #endif jpayne@68: PyTypeObject *b; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (PyClass_Check(b0)) jpayne@68: { jpayne@68: PyErr_Format(PyExc_TypeError, "base class '%.200s' is an old-style class", jpayne@68: PyString_AS_STRING(((PyClassObject*)b0)->cl_name)); jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: Py_DECREF(b0); jpayne@68: #endif jpayne@68: return -1; jpayne@68: } jpayne@68: #endif jpayne@68: b = (PyTypeObject*) b0; jpayne@68: if (!__Pyx_PyType_HasFeature(b, Py_TPFLAGS_HEAPTYPE)) jpayne@68: { jpayne@68: __Pyx_TypeName b_name = __Pyx_PyType_GetName(b); jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "base class '" __Pyx_FMT_TYPENAME "' is not a heap type", b_name); jpayne@68: __Pyx_DECREF_TypeName(b_name); jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: Py_DECREF(b0); jpayne@68: #endif jpayne@68: return -1; jpayne@68: } jpayne@68: if (dictoffset == 0) jpayne@68: { jpayne@68: Py_ssize_t b_dictoffset = 0; jpayne@68: #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY jpayne@68: b_dictoffset = b->tp_dictoffset; jpayne@68: #else jpayne@68: PyObject *py_b_dictoffset = PyObject_GetAttrString((PyObject*)b, "__dictoffset__"); jpayne@68: if (!py_b_dictoffset) goto dictoffset_return; jpayne@68: b_dictoffset = PyLong_AsSsize_t(py_b_dictoffset); jpayne@68: Py_DECREF(py_b_dictoffset); jpayne@68: if (b_dictoffset == -1 && PyErr_Occurred()) goto dictoffset_return; jpayne@68: #endif jpayne@68: if (b_dictoffset) { jpayne@68: { jpayne@68: __Pyx_TypeName b_name = __Pyx_PyType_GetName(b); jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "extension type '%.200s' has no __dict__ slot, " jpayne@68: "but base type '" __Pyx_FMT_TYPENAME "' has: " jpayne@68: "either add 'cdef dict __dict__' to the extension type " jpayne@68: "or add '__slots__ = [...]' to the base type", jpayne@68: type_name, b_name); jpayne@68: __Pyx_DECREF_TypeName(b_name); jpayne@68: } jpayne@68: #if !(CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY) jpayne@68: dictoffset_return: jpayne@68: #endif jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: Py_DECREF(b0); jpayne@68: #endif jpayne@68: return -1; jpayne@68: } jpayne@68: } jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: Py_DECREF(b0); jpayne@68: #endif jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyType_Ready */ jpayne@68: static int __Pyx_PyType_Ready(PyTypeObject *t) { jpayne@68: #if CYTHON_USE_TYPE_SPECS || !(CYTHON_COMPILING_IN_CPYTHON || CYTHON_COMPILING_IN_LIMITED_API) || defined(PYSTON_MAJOR_VERSION) jpayne@68: (void)__Pyx_PyObject_CallMethod0; jpayne@68: #if CYTHON_USE_TYPE_SPECS jpayne@68: (void)__Pyx_validate_bases_tuple; jpayne@68: #endif jpayne@68: return PyType_Ready(t); jpayne@68: #else jpayne@68: int r; jpayne@68: PyObject *bases = __Pyx_PyType_GetSlot(t, tp_bases, PyObject*); jpayne@68: if (bases && unlikely(__Pyx_validate_bases_tuple(t->tp_name, t->tp_dictoffset, bases) == -1)) jpayne@68: return -1; jpayne@68: #if PY_VERSION_HEX >= 0x03050000 && !defined(PYSTON_MAJOR_VERSION) jpayne@68: { jpayne@68: int gc_was_enabled; jpayne@68: #if PY_VERSION_HEX >= 0x030A00b1 jpayne@68: gc_was_enabled = PyGC_Disable(); jpayne@68: (void)__Pyx_PyObject_CallMethod0; jpayne@68: #else jpayne@68: PyObject *ret, *py_status; jpayne@68: PyObject *gc = NULL; jpayne@68: #if PY_VERSION_HEX >= 0x030700a1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM+0 >= 0x07030400) jpayne@68: gc = PyImport_GetModule(__pyx_kp_u_gc); jpayne@68: #endif jpayne@68: if (unlikely(!gc)) gc = PyImport_Import(__pyx_kp_u_gc); jpayne@68: if (unlikely(!gc)) return -1; jpayne@68: py_status = __Pyx_PyObject_CallMethod0(gc, __pyx_kp_u_isenabled); jpayne@68: if (unlikely(!py_status)) { jpayne@68: Py_DECREF(gc); jpayne@68: return -1; jpayne@68: } jpayne@68: gc_was_enabled = __Pyx_PyObject_IsTrue(py_status); jpayne@68: Py_DECREF(py_status); jpayne@68: if (gc_was_enabled > 0) { jpayne@68: ret = __Pyx_PyObject_CallMethod0(gc, __pyx_kp_u_disable); jpayne@68: if (unlikely(!ret)) { jpayne@68: Py_DECREF(gc); jpayne@68: return -1; jpayne@68: } jpayne@68: Py_DECREF(ret); jpayne@68: } else if (unlikely(gc_was_enabled == -1)) { jpayne@68: Py_DECREF(gc); jpayne@68: return -1; jpayne@68: } jpayne@68: #endif jpayne@68: t->tp_flags |= Py_TPFLAGS_HEAPTYPE; jpayne@68: #if PY_VERSION_HEX >= 0x030A0000 jpayne@68: t->tp_flags |= Py_TPFLAGS_IMMUTABLETYPE; jpayne@68: #endif jpayne@68: #else jpayne@68: (void)__Pyx_PyObject_CallMethod0; jpayne@68: #endif jpayne@68: r = PyType_Ready(t); jpayne@68: #if PY_VERSION_HEX >= 0x03050000 && !defined(PYSTON_MAJOR_VERSION) jpayne@68: t->tp_flags &= ~Py_TPFLAGS_HEAPTYPE; jpayne@68: #if PY_VERSION_HEX >= 0x030A00b1 jpayne@68: if (gc_was_enabled) jpayne@68: PyGC_Enable(); jpayne@68: #else jpayne@68: if (gc_was_enabled) { jpayne@68: PyObject *tp, *v, *tb; jpayne@68: PyErr_Fetch(&tp, &v, &tb); jpayne@68: ret = __Pyx_PyObject_CallMethod0(gc, __pyx_kp_u_enable); jpayne@68: if (likely(ret || r == -1)) { jpayne@68: Py_XDECREF(ret); jpayne@68: PyErr_Restore(tp, v, tb); jpayne@68: } else { jpayne@68: Py_XDECREF(tp); jpayne@68: Py_XDECREF(v); jpayne@68: Py_XDECREF(tb); jpayne@68: r = -1; jpayne@68: } jpayne@68: } jpayne@68: Py_DECREF(gc); jpayne@68: #endif jpayne@68: } jpayne@68: #endif jpayne@68: return r; jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: /* PyObject_GenericGetAttrNoDict */ jpayne@68: #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 jpayne@68: static PyObject *__Pyx_RaiseGenericGetAttributeError(PyTypeObject *tp, PyObject *attr_name) { jpayne@68: __Pyx_TypeName type_name = __Pyx_PyType_GetName(tp); jpayne@68: PyErr_Format(PyExc_AttributeError, jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: "'" __Pyx_FMT_TYPENAME "' object has no attribute '%U'", jpayne@68: type_name, attr_name); jpayne@68: #else jpayne@68: "'" __Pyx_FMT_TYPENAME "' object has no attribute '%.400s'", jpayne@68: type_name, PyString_AS_STRING(attr_name)); jpayne@68: #endif jpayne@68: __Pyx_DECREF_TypeName(type_name); jpayne@68: return NULL; jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name) { jpayne@68: PyObject *descr; jpayne@68: PyTypeObject *tp = Py_TYPE(obj); jpayne@68: if (unlikely(!PyString_Check(attr_name))) { jpayne@68: return PyObject_GenericGetAttr(obj, attr_name); jpayne@68: } jpayne@68: assert(!tp->tp_dictoffset); jpayne@68: descr = _PyType_Lookup(tp, attr_name); jpayne@68: if (unlikely(!descr)) { jpayne@68: return __Pyx_RaiseGenericGetAttributeError(tp, attr_name); jpayne@68: } jpayne@68: Py_INCREF(descr); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_HAVE_CLASS))) jpayne@68: #endif jpayne@68: { jpayne@68: descrgetfunc f = Py_TYPE(descr)->tp_descr_get; jpayne@68: if (unlikely(f)) { jpayne@68: PyObject *res = f(descr, obj, (PyObject *)tp); jpayne@68: Py_DECREF(descr); jpayne@68: return res; jpayne@68: } jpayne@68: } jpayne@68: return descr; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyObject_GenericGetAttr */ jpayne@68: #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 jpayne@68: static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name) { jpayne@68: if (unlikely(Py_TYPE(obj)->tp_dictoffset)) { jpayne@68: return PyObject_GenericGetAttr(obj, attr_name); jpayne@68: } jpayne@68: return __Pyx_PyObject_GenericGetAttrNoDict(obj, attr_name); jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* SetupReduce */ jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static int __Pyx_setup_reduce_is_named(PyObject* meth, PyObject* name) { jpayne@68: int ret; jpayne@68: PyObject *name_attr; jpayne@68: name_attr = __Pyx_PyObject_GetAttrStrNoError(meth, __pyx_n_s_name); jpayne@68: if (likely(name_attr)) { jpayne@68: ret = PyObject_RichCompareBool(name_attr, name, Py_EQ); jpayne@68: } else { jpayne@68: ret = -1; jpayne@68: } jpayne@68: if (unlikely(ret < 0)) { jpayne@68: PyErr_Clear(); jpayne@68: ret = 0; jpayne@68: } jpayne@68: Py_XDECREF(name_attr); jpayne@68: return ret; jpayne@68: } jpayne@68: static int __Pyx_setup_reduce(PyObject* type_obj) { jpayne@68: int ret = 0; jpayne@68: PyObject *object_reduce = NULL; jpayne@68: PyObject *object_getstate = NULL; jpayne@68: PyObject *object_reduce_ex = NULL; jpayne@68: PyObject *reduce = NULL; jpayne@68: PyObject *reduce_ex = NULL; jpayne@68: PyObject *reduce_cython = NULL; jpayne@68: PyObject *setstate = NULL; jpayne@68: PyObject *setstate_cython = NULL; jpayne@68: PyObject *getstate = NULL; jpayne@68: #if CYTHON_USE_PYTYPE_LOOKUP jpayne@68: getstate = _PyType_Lookup((PyTypeObject*)type_obj, __pyx_n_s_getstate); jpayne@68: #else jpayne@68: getstate = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_getstate); jpayne@68: if (!getstate && PyErr_Occurred()) { jpayne@68: goto __PYX_BAD; jpayne@68: } jpayne@68: #endif jpayne@68: if (getstate) { jpayne@68: #if CYTHON_USE_PYTYPE_LOOKUP jpayne@68: object_getstate = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_getstate); jpayne@68: #else jpayne@68: object_getstate = __Pyx_PyObject_GetAttrStrNoError((PyObject*)&PyBaseObject_Type, __pyx_n_s_getstate); jpayne@68: if (!object_getstate && PyErr_Occurred()) { jpayne@68: goto __PYX_BAD; jpayne@68: } jpayne@68: #endif jpayne@68: if (object_getstate != getstate) { jpayne@68: goto __PYX_GOOD; jpayne@68: } jpayne@68: } jpayne@68: #if CYTHON_USE_PYTYPE_LOOKUP jpayne@68: object_reduce_ex = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD; jpayne@68: #else jpayne@68: object_reduce_ex = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD; jpayne@68: #endif jpayne@68: reduce_ex = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_ex); if (unlikely(!reduce_ex)) goto __PYX_BAD; jpayne@68: if (reduce_ex == object_reduce_ex) { jpayne@68: #if CYTHON_USE_PYTYPE_LOOKUP jpayne@68: object_reduce = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto __PYX_BAD; jpayne@68: #else jpayne@68: object_reduce = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto __PYX_BAD; jpayne@68: #endif jpayne@68: reduce = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce); if (unlikely(!reduce)) goto __PYX_BAD; jpayne@68: if (reduce == object_reduce || __Pyx_setup_reduce_is_named(reduce, __pyx_n_s_reduce_cython)) { jpayne@68: reduce_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_reduce_cython); jpayne@68: if (likely(reduce_cython)) { jpayne@68: ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce, reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD; jpayne@68: ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD; jpayne@68: } else if (reduce == object_reduce || PyErr_Occurred()) { jpayne@68: goto __PYX_BAD; jpayne@68: } jpayne@68: setstate = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_setstate); jpayne@68: if (!setstate) PyErr_Clear(); jpayne@68: if (!setstate || __Pyx_setup_reduce_is_named(setstate, __pyx_n_s_setstate_cython)) { jpayne@68: setstate_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_setstate_cython); jpayne@68: if (likely(setstate_cython)) { jpayne@68: ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate, setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD; jpayne@68: ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD; jpayne@68: } else if (!setstate || PyErr_Occurred()) { jpayne@68: goto __PYX_BAD; jpayne@68: } jpayne@68: } jpayne@68: PyType_Modified((PyTypeObject*)type_obj); jpayne@68: } jpayne@68: } jpayne@68: goto __PYX_GOOD; jpayne@68: __PYX_BAD: jpayne@68: if (!PyErr_Occurred()) { jpayne@68: __Pyx_TypeName type_obj_name = jpayne@68: __Pyx_PyType_GetName((PyTypeObject*)type_obj); jpayne@68: PyErr_Format(PyExc_RuntimeError, jpayne@68: "Unable to initialize pickling for " __Pyx_FMT_TYPENAME, type_obj_name); jpayne@68: __Pyx_DECREF_TypeName(type_obj_name); jpayne@68: } jpayne@68: ret = -1; jpayne@68: __PYX_GOOD: jpayne@68: #if !CYTHON_USE_PYTYPE_LOOKUP jpayne@68: Py_XDECREF(object_reduce); jpayne@68: Py_XDECREF(object_reduce_ex); jpayne@68: Py_XDECREF(object_getstate); jpayne@68: Py_XDECREF(getstate); jpayne@68: #endif jpayne@68: Py_XDECREF(reduce); jpayne@68: Py_XDECREF(reduce_ex); jpayne@68: Py_XDECREF(reduce_cython); jpayne@68: Py_XDECREF(setstate); jpayne@68: Py_XDECREF(setstate_cython); jpayne@68: return ret; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* TypeImport */ jpayne@68: #ifndef __PYX_HAVE_RT_ImportType_3_0_11 jpayne@68: #define __PYX_HAVE_RT_ImportType_3_0_11 jpayne@68: static PyTypeObject *__Pyx_ImportType_3_0_11(PyObject *module, const char *module_name, const char *class_name, jpayne@68: size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_0_11 check_size) jpayne@68: { jpayne@68: PyObject *result = 0; jpayne@68: char warning[200]; jpayne@68: Py_ssize_t basicsize; jpayne@68: Py_ssize_t itemsize; jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: PyObject *py_basicsize; jpayne@68: PyObject *py_itemsize; jpayne@68: #endif jpayne@68: result = PyObject_GetAttrString(module, class_name); jpayne@68: if (!result) jpayne@68: goto bad; jpayne@68: if (!PyType_Check(result)) { jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s.%.200s is not a type object", jpayne@68: module_name, class_name); jpayne@68: goto bad; jpayne@68: } jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: basicsize = ((PyTypeObject *)result)->tp_basicsize; jpayne@68: itemsize = ((PyTypeObject *)result)->tp_itemsize; jpayne@68: #else jpayne@68: py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); jpayne@68: if (!py_basicsize) jpayne@68: goto bad; jpayne@68: basicsize = PyLong_AsSsize_t(py_basicsize); jpayne@68: Py_DECREF(py_basicsize); jpayne@68: py_basicsize = 0; jpayne@68: if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) jpayne@68: goto bad; jpayne@68: py_itemsize = PyObject_GetAttrString(result, "__itemsize__"); jpayne@68: if (!py_itemsize) jpayne@68: goto bad; jpayne@68: itemsize = PyLong_AsSsize_t(py_itemsize); jpayne@68: Py_DECREF(py_itemsize); jpayne@68: py_itemsize = 0; jpayne@68: if (itemsize == (Py_ssize_t)-1 && PyErr_Occurred()) jpayne@68: goto bad; jpayne@68: #endif jpayne@68: if (itemsize) { jpayne@68: if (size % alignment) { jpayne@68: alignment = size % alignment; jpayne@68: } jpayne@68: if (itemsize < (Py_ssize_t)alignment) jpayne@68: itemsize = (Py_ssize_t)alignment; jpayne@68: } jpayne@68: if ((size_t)(basicsize + itemsize) < size) { jpayne@68: PyErr_Format(PyExc_ValueError, jpayne@68: "%.200s.%.200s size changed, may indicate binary incompatibility. " jpayne@68: "Expected %zd from C header, got %zd from PyObject", jpayne@68: module_name, class_name, size, basicsize+itemsize); jpayne@68: goto bad; jpayne@68: } jpayne@68: if (check_size == __Pyx_ImportType_CheckSize_Error_3_0_11 && jpayne@68: ((size_t)basicsize > size || (size_t)(basicsize + itemsize) < size)) { jpayne@68: PyErr_Format(PyExc_ValueError, jpayne@68: "%.200s.%.200s size changed, may indicate binary incompatibility. " jpayne@68: "Expected %zd from C header, got %zd-%zd from PyObject", jpayne@68: module_name, class_name, size, basicsize, basicsize+itemsize); jpayne@68: goto bad; jpayne@68: } jpayne@68: else if (check_size == __Pyx_ImportType_CheckSize_Warn_3_0_11 && (size_t)basicsize > size) { jpayne@68: PyOS_snprintf(warning, sizeof(warning), jpayne@68: "%s.%s size changed, may indicate binary incompatibility. " jpayne@68: "Expected %zd from C header, got %zd from PyObject", jpayne@68: module_name, class_name, size, basicsize); jpayne@68: if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; jpayne@68: } jpayne@68: return (PyTypeObject *)result; jpayne@68: bad: jpayne@68: Py_XDECREF(result); jpayne@68: return NULL; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* GetVTable */ jpayne@68: static void* __Pyx_GetVtable(PyTypeObject *type) { jpayne@68: void* ptr; jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: PyObject *ob = PyObject_GetAttr((PyObject *)type, __pyx_n_s_pyx_vtable); jpayne@68: #else jpayne@68: PyObject *ob = PyObject_GetItem(type->tp_dict, __pyx_n_s_pyx_vtable); jpayne@68: #endif jpayne@68: if (!ob) jpayne@68: goto bad; jpayne@68: ptr = PyCapsule_GetPointer(ob, 0); jpayne@68: if (!ptr && !PyErr_Occurred()) jpayne@68: PyErr_SetString(PyExc_RuntimeError, "invalid vtable found for imported type"); jpayne@68: Py_DECREF(ob); jpayne@68: return ptr; jpayne@68: bad: jpayne@68: Py_XDECREF(ob); jpayne@68: return NULL; jpayne@68: } jpayne@68: jpayne@68: /* FetchSharedCythonModule */ jpayne@68: static PyObject *__Pyx_FetchSharedCythonABIModule(void) { jpayne@68: return __Pyx_PyImport_AddModuleRef((char*) __PYX_ABI_MODULE_NAME); jpayne@68: } jpayne@68: jpayne@68: /* FetchCommonType */ jpayne@68: static int __Pyx_VerifyCachedType(PyObject *cached_type, jpayne@68: const char *name, jpayne@68: Py_ssize_t basicsize, jpayne@68: Py_ssize_t expected_basicsize) { jpayne@68: if (!PyType_Check(cached_type)) { jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "Shared Cython type %.200s is not a type object", name); jpayne@68: return -1; jpayne@68: } jpayne@68: if (basicsize != expected_basicsize) { jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "Shared Cython type %.200s has the wrong size, try recompiling", jpayne@68: name); jpayne@68: return -1; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: #if !CYTHON_USE_TYPE_SPECS jpayne@68: static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type) { jpayne@68: PyObject* abi_module; jpayne@68: const char* object_name; jpayne@68: PyTypeObject *cached_type = NULL; jpayne@68: abi_module = __Pyx_FetchSharedCythonABIModule(); jpayne@68: if (!abi_module) return NULL; jpayne@68: object_name = strrchr(type->tp_name, '.'); jpayne@68: object_name = object_name ? object_name+1 : type->tp_name; jpayne@68: cached_type = (PyTypeObject*) PyObject_GetAttrString(abi_module, object_name); jpayne@68: if (cached_type) { jpayne@68: if (__Pyx_VerifyCachedType( jpayne@68: (PyObject *)cached_type, jpayne@68: object_name, jpayne@68: cached_type->tp_basicsize, jpayne@68: type->tp_basicsize) < 0) { jpayne@68: goto bad; jpayne@68: } jpayne@68: goto done; jpayne@68: } jpayne@68: if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad; jpayne@68: PyErr_Clear(); jpayne@68: if (PyType_Ready(type) < 0) goto bad; jpayne@68: if (PyObject_SetAttrString(abi_module, object_name, (PyObject *)type) < 0) jpayne@68: goto bad; jpayne@68: Py_INCREF(type); jpayne@68: cached_type = type; jpayne@68: done: jpayne@68: Py_DECREF(abi_module); jpayne@68: return cached_type; jpayne@68: bad: jpayne@68: Py_XDECREF(cached_type); jpayne@68: cached_type = NULL; jpayne@68: goto done; jpayne@68: } jpayne@68: #else jpayne@68: static PyTypeObject *__Pyx_FetchCommonTypeFromSpec(PyObject *module, PyType_Spec *spec, PyObject *bases) { jpayne@68: PyObject *abi_module, *cached_type = NULL; jpayne@68: const char* object_name = strrchr(spec->name, '.'); jpayne@68: object_name = object_name ? object_name+1 : spec->name; jpayne@68: abi_module = __Pyx_FetchSharedCythonABIModule(); jpayne@68: if (!abi_module) return NULL; jpayne@68: cached_type = PyObject_GetAttrString(abi_module, object_name); jpayne@68: if (cached_type) { jpayne@68: Py_ssize_t basicsize; jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: PyObject *py_basicsize; jpayne@68: py_basicsize = PyObject_GetAttrString(cached_type, "__basicsize__"); jpayne@68: if (unlikely(!py_basicsize)) goto bad; jpayne@68: basicsize = PyLong_AsSsize_t(py_basicsize); jpayne@68: Py_DECREF(py_basicsize); jpayne@68: py_basicsize = 0; jpayne@68: if (unlikely(basicsize == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad; jpayne@68: #else jpayne@68: basicsize = likely(PyType_Check(cached_type)) ? ((PyTypeObject*) cached_type)->tp_basicsize : -1; jpayne@68: #endif jpayne@68: if (__Pyx_VerifyCachedType( jpayne@68: cached_type, jpayne@68: object_name, jpayne@68: basicsize, jpayne@68: spec->basicsize) < 0) { jpayne@68: goto bad; jpayne@68: } jpayne@68: goto done; jpayne@68: } jpayne@68: if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad; jpayne@68: PyErr_Clear(); jpayne@68: CYTHON_UNUSED_VAR(module); jpayne@68: cached_type = __Pyx_PyType_FromModuleAndSpec(abi_module, spec, bases); jpayne@68: if (unlikely(!cached_type)) goto bad; jpayne@68: if (unlikely(__Pyx_fix_up_extension_type_from_spec(spec, (PyTypeObject *) cached_type) < 0)) goto bad; jpayne@68: if (PyObject_SetAttrString(abi_module, object_name, cached_type) < 0) goto bad; jpayne@68: done: jpayne@68: Py_DECREF(abi_module); jpayne@68: assert(cached_type == NULL || PyType_Check(cached_type)); jpayne@68: return (PyTypeObject *) cached_type; jpayne@68: bad: jpayne@68: Py_XDECREF(cached_type); jpayne@68: cached_type = NULL; jpayne@68: goto done; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyVectorcallFastCallDict */ jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: static PyObject *__Pyx_PyVectorcall_FastCallDict_kw(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw) jpayne@68: { jpayne@68: PyObject *res = NULL; jpayne@68: PyObject *kwnames; jpayne@68: PyObject **newargs; jpayne@68: PyObject **kwvalues; jpayne@68: Py_ssize_t i, pos; jpayne@68: size_t j; jpayne@68: PyObject *key, *value; jpayne@68: unsigned long keys_are_strings; jpayne@68: Py_ssize_t nkw = PyDict_GET_SIZE(kw); jpayne@68: newargs = (PyObject **)PyMem_Malloc((nargs + (size_t)nkw) * sizeof(args[0])); jpayne@68: if (unlikely(newargs == NULL)) { jpayne@68: PyErr_NoMemory(); jpayne@68: return NULL; jpayne@68: } jpayne@68: for (j = 0; j < nargs; j++) newargs[j] = args[j]; jpayne@68: kwnames = PyTuple_New(nkw); jpayne@68: if (unlikely(kwnames == NULL)) { jpayne@68: PyMem_Free(newargs); jpayne@68: return NULL; jpayne@68: } jpayne@68: kwvalues = newargs + nargs; jpayne@68: pos = i = 0; jpayne@68: keys_are_strings = Py_TPFLAGS_UNICODE_SUBCLASS; jpayne@68: while (PyDict_Next(kw, &pos, &key, &value)) { jpayne@68: keys_are_strings &= Py_TYPE(key)->tp_flags; jpayne@68: Py_INCREF(key); jpayne@68: Py_INCREF(value); jpayne@68: PyTuple_SET_ITEM(kwnames, i, key); jpayne@68: kwvalues[i] = value; jpayne@68: i++; jpayne@68: } jpayne@68: if (unlikely(!keys_are_strings)) { jpayne@68: PyErr_SetString(PyExc_TypeError, "keywords must be strings"); jpayne@68: goto cleanup; jpayne@68: } jpayne@68: res = vc(func, newargs, nargs, kwnames); jpayne@68: cleanup: jpayne@68: Py_DECREF(kwnames); jpayne@68: for (i = 0; i < nkw; i++) jpayne@68: Py_DECREF(kwvalues[i]); jpayne@68: PyMem_Free(newargs); jpayne@68: return res; jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject *__Pyx_PyVectorcall_FastCallDict(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw) jpayne@68: { jpayne@68: if (likely(kw == NULL) || PyDict_GET_SIZE(kw) == 0) { jpayne@68: return vc(func, args, nargs, NULL); jpayne@68: } jpayne@68: return __Pyx_PyVectorcall_FastCallDict_kw(func, vc, args, nargs, kw); jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* CythonFunctionShared */ jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc) { jpayne@68: if (__Pyx_CyFunction_Check(func)) { jpayne@68: return PyCFunction_GetFunction(((__pyx_CyFunctionObject*)func)->func) == (PyCFunction) cfunc; jpayne@68: } else if (PyCFunction_Check(func)) { jpayne@68: return PyCFunction_GetFunction(func) == (PyCFunction) cfunc; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: #else jpayne@68: static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc) { jpayne@68: return __Pyx_CyOrPyCFunction_Check(func) && __Pyx_CyOrPyCFunction_GET_FUNCTION(func) == (PyCFunction) cfunc; jpayne@68: } jpayne@68: #endif jpayne@68: static CYTHON_INLINE void __Pyx__CyFunction_SetClassObj(__pyx_CyFunctionObject* f, PyObject* classobj) { jpayne@68: #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: __Pyx_Py_XDECREF_SET( jpayne@68: __Pyx_CyFunction_GetClassObj(f), jpayne@68: ((classobj) ? __Pyx_NewRef(classobj) : NULL)); jpayne@68: #else jpayne@68: __Pyx_Py_XDECREF_SET( jpayne@68: ((PyCMethodObject *) (f))->mm_class, jpayne@68: (PyTypeObject*)((classobj) ? __Pyx_NewRef(classobj) : NULL)); jpayne@68: #endif jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, void *closure) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(closure); jpayne@68: if (unlikely(op->func_doc == NULL)) { jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: op->func_doc = PyObject_GetAttrString(op->func, "__doc__"); jpayne@68: if (unlikely(!op->func_doc)) return NULL; jpayne@68: #else jpayne@68: if (((PyCFunctionObject*)op)->m_ml->ml_doc) { jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: op->func_doc = PyUnicode_FromString(((PyCFunctionObject*)op)->m_ml->ml_doc); jpayne@68: #else jpayne@68: op->func_doc = PyString_FromString(((PyCFunctionObject*)op)->m_ml->ml_doc); jpayne@68: #endif jpayne@68: if (unlikely(op->func_doc == NULL)) jpayne@68: return NULL; jpayne@68: } else { jpayne@68: Py_INCREF(Py_None); jpayne@68: return Py_None; jpayne@68: } jpayne@68: #endif jpayne@68: } jpayne@68: Py_INCREF(op->func_doc); jpayne@68: return op->func_doc; jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_set_doc(__pyx_CyFunctionObject *op, PyObject *value, void *context) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (value == NULL) { jpayne@68: value = Py_None; jpayne@68: } jpayne@68: Py_INCREF(value); jpayne@68: __Pyx_Py_XDECREF_SET(op->func_doc, value); jpayne@68: return 0; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op, void *context) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (unlikely(op->func_name == NULL)) { jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: op->func_name = PyObject_GetAttrString(op->func, "__name__"); jpayne@68: #elif PY_MAJOR_VERSION >= 3 jpayne@68: op->func_name = PyUnicode_InternFromString(((PyCFunctionObject*)op)->m_ml->ml_name); jpayne@68: #else jpayne@68: op->func_name = PyString_InternFromString(((PyCFunctionObject*)op)->m_ml->ml_name); jpayne@68: #endif jpayne@68: if (unlikely(op->func_name == NULL)) jpayne@68: return NULL; jpayne@68: } jpayne@68: Py_INCREF(op->func_name); jpayne@68: return op->func_name; jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value, void *context) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: if (unlikely(value == NULL || !PyUnicode_Check(value))) jpayne@68: #else jpayne@68: if (unlikely(value == NULL || !PyString_Check(value))) jpayne@68: #endif jpayne@68: { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "__name__ must be set to a string object"); jpayne@68: return -1; jpayne@68: } jpayne@68: Py_INCREF(value); jpayne@68: __Pyx_Py_XDECREF_SET(op->func_name, value); jpayne@68: return 0; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_qualname(__pyx_CyFunctionObject *op, void *context) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: Py_INCREF(op->func_qualname); jpayne@68: return op->func_qualname; jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject *op, PyObject *value, void *context) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: if (unlikely(value == NULL || !PyUnicode_Check(value))) jpayne@68: #else jpayne@68: if (unlikely(value == NULL || !PyString_Check(value))) jpayne@68: #endif jpayne@68: { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "__qualname__ must be set to a string object"); jpayne@68: return -1; jpayne@68: } jpayne@68: Py_INCREF(value); jpayne@68: __Pyx_Py_XDECREF_SET(op->func_qualname, value); jpayne@68: return 0; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op, void *context) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (unlikely(op->func_dict == NULL)) { jpayne@68: op->func_dict = PyDict_New(); jpayne@68: if (unlikely(op->func_dict == NULL)) jpayne@68: return NULL; jpayne@68: } jpayne@68: Py_INCREF(op->func_dict); jpayne@68: return op->func_dict; jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_set_dict(__pyx_CyFunctionObject *op, PyObject *value, void *context) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (unlikely(value == NULL)) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "function's dictionary may not be deleted"); jpayne@68: return -1; jpayne@68: } jpayne@68: if (unlikely(!PyDict_Check(value))) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "setting function's dictionary to a non-dict"); jpayne@68: return -1; jpayne@68: } jpayne@68: Py_INCREF(value); jpayne@68: __Pyx_Py_XDECREF_SET(op->func_dict, value); jpayne@68: return 0; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_globals(__pyx_CyFunctionObject *op, void *context) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: Py_INCREF(op->func_globals); jpayne@68: return op->func_globals; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_closure(__pyx_CyFunctionObject *op, void *context) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(op); jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: Py_INCREF(Py_None); jpayne@68: return Py_None; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op, void *context) jpayne@68: { jpayne@68: PyObject* result = (op->func_code) ? op->func_code : Py_None; jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: Py_INCREF(result); jpayne@68: return result; jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject *op) { jpayne@68: int result = 0; jpayne@68: PyObject *res = op->defaults_getter((PyObject *) op); jpayne@68: if (unlikely(!res)) jpayne@68: return -1; jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS jpayne@68: op->defaults_tuple = PyTuple_GET_ITEM(res, 0); jpayne@68: Py_INCREF(op->defaults_tuple); jpayne@68: op->defaults_kwdict = PyTuple_GET_ITEM(res, 1); jpayne@68: Py_INCREF(op->defaults_kwdict); jpayne@68: #else jpayne@68: op->defaults_tuple = __Pyx_PySequence_ITEM(res, 0); jpayne@68: if (unlikely(!op->defaults_tuple)) result = -1; jpayne@68: else { jpayne@68: op->defaults_kwdict = __Pyx_PySequence_ITEM(res, 1); jpayne@68: if (unlikely(!op->defaults_kwdict)) result = -1; jpayne@68: } jpayne@68: #endif jpayne@68: Py_DECREF(res); jpayne@68: return result; jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject *op, PyObject* value, void *context) { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (!value) { jpayne@68: value = Py_None; jpayne@68: } else if (unlikely(value != Py_None && !PyTuple_Check(value))) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "__defaults__ must be set to a tuple object"); jpayne@68: return -1; jpayne@68: } jpayne@68: PyErr_WarnEx(PyExc_RuntimeWarning, "changes to cyfunction.__defaults__ will not " jpayne@68: "currently affect the values used in function calls", 1); jpayne@68: Py_INCREF(value); jpayne@68: __Pyx_Py_XDECREF_SET(op->defaults_tuple, value); jpayne@68: return 0; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op, void *context) { jpayne@68: PyObject* result = op->defaults_tuple; jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (unlikely(!result)) { jpayne@68: if (op->defaults_getter) { jpayne@68: if (unlikely(__Pyx_CyFunction_init_defaults(op) < 0)) return NULL; jpayne@68: result = op->defaults_tuple; jpayne@68: } else { jpayne@68: result = Py_None; jpayne@68: } jpayne@68: } jpayne@68: Py_INCREF(result); jpayne@68: return result; jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_set_kwdefaults(__pyx_CyFunctionObject *op, PyObject* value, void *context) { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (!value) { jpayne@68: value = Py_None; jpayne@68: } else if (unlikely(value != Py_None && !PyDict_Check(value))) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "__kwdefaults__ must be set to a dict object"); jpayne@68: return -1; jpayne@68: } jpayne@68: PyErr_WarnEx(PyExc_RuntimeWarning, "changes to cyfunction.__kwdefaults__ will not " jpayne@68: "currently affect the values used in function calls", 1); jpayne@68: Py_INCREF(value); jpayne@68: __Pyx_Py_XDECREF_SET(op->defaults_kwdict, value); jpayne@68: return 0; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject *op, void *context) { jpayne@68: PyObject* result = op->defaults_kwdict; jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (unlikely(!result)) { jpayne@68: if (op->defaults_getter) { jpayne@68: if (unlikely(__Pyx_CyFunction_init_defaults(op) < 0)) return NULL; jpayne@68: result = op->defaults_kwdict; jpayne@68: } else { jpayne@68: result = Py_None; jpayne@68: } jpayne@68: } jpayne@68: Py_INCREF(result); jpayne@68: return result; jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_set_annotations(__pyx_CyFunctionObject *op, PyObject* value, void *context) { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (!value || value == Py_None) { jpayne@68: value = NULL; jpayne@68: } else if (unlikely(!PyDict_Check(value))) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "__annotations__ must be set to a dict object"); jpayne@68: return -1; jpayne@68: } jpayne@68: Py_XINCREF(value); jpayne@68: __Pyx_Py_XDECREF_SET(op->func_annotations, value); jpayne@68: return 0; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject *op, void *context) { jpayne@68: PyObject* result = op->func_annotations; jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (unlikely(!result)) { jpayne@68: result = PyDict_New(); jpayne@68: if (unlikely(!result)) return NULL; jpayne@68: op->func_annotations = result; jpayne@68: } jpayne@68: Py_INCREF(result); jpayne@68: return result; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_is_coroutine(__pyx_CyFunctionObject *op, void *context) { jpayne@68: int is_coroutine; jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (op->func_is_coroutine) { jpayne@68: return __Pyx_NewRef(op->func_is_coroutine); jpayne@68: } jpayne@68: is_coroutine = op->flags & __Pyx_CYFUNCTION_COROUTINE; jpayne@68: #if PY_VERSION_HEX >= 0x03050000 jpayne@68: if (is_coroutine) { jpayne@68: PyObject *module, *fromlist, *marker = __pyx_n_s_is_coroutine; jpayne@68: fromlist = PyList_New(1); jpayne@68: if (unlikely(!fromlist)) return NULL; jpayne@68: Py_INCREF(marker); jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: PyList_SET_ITEM(fromlist, 0, marker); jpayne@68: #else jpayne@68: if (unlikely(PyList_SetItem(fromlist, 0, marker) < 0)) { jpayne@68: Py_DECREF(marker); jpayne@68: Py_DECREF(fromlist); jpayne@68: return NULL; jpayne@68: } jpayne@68: #endif jpayne@68: module = PyImport_ImportModuleLevelObject(__pyx_n_s_asyncio_coroutines, NULL, NULL, fromlist, 0); jpayne@68: Py_DECREF(fromlist); jpayne@68: if (unlikely(!module)) goto ignore; jpayne@68: op->func_is_coroutine = __Pyx_PyObject_GetAttrStr(module, marker); jpayne@68: Py_DECREF(module); jpayne@68: if (likely(op->func_is_coroutine)) { jpayne@68: return __Pyx_NewRef(op->func_is_coroutine); jpayne@68: } jpayne@68: ignore: jpayne@68: PyErr_Clear(); jpayne@68: } jpayne@68: #endif jpayne@68: op->func_is_coroutine = __Pyx_PyBool_FromLong(is_coroutine); jpayne@68: return __Pyx_NewRef(op->func_is_coroutine); jpayne@68: } jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_module(__pyx_CyFunctionObject *op, void *context) { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: return PyObject_GetAttrString(op->func, "__module__"); jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_set_module(__pyx_CyFunctionObject *op, PyObject* value, void *context) { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: return PyObject_SetAttrString(op->func, "__module__", value); jpayne@68: } jpayne@68: #endif jpayne@68: static PyGetSetDef __pyx_CyFunction_getsets[] = { jpayne@68: {(char *) "func_doc", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, jpayne@68: {(char *) "__doc__", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, jpayne@68: {(char *) "func_name", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, jpayne@68: {(char *) "__name__", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, jpayne@68: {(char *) "__qualname__", (getter)__Pyx_CyFunction_get_qualname, (setter)__Pyx_CyFunction_set_qualname, 0, 0}, jpayne@68: {(char *) "func_dict", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0}, jpayne@68: {(char *) "__dict__", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0}, jpayne@68: {(char *) "func_globals", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, jpayne@68: {(char *) "__globals__", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, jpayne@68: {(char *) "func_closure", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0}, jpayne@68: {(char *) "__closure__", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0}, jpayne@68: {(char *) "func_code", (getter)__Pyx_CyFunction_get_code, 0, 0, 0}, jpayne@68: {(char *) "__code__", (getter)__Pyx_CyFunction_get_code, 0, 0, 0}, jpayne@68: {(char *) "func_defaults", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, jpayne@68: {(char *) "__defaults__", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, jpayne@68: {(char *) "__kwdefaults__", (getter)__Pyx_CyFunction_get_kwdefaults, (setter)__Pyx_CyFunction_set_kwdefaults, 0, 0}, jpayne@68: {(char *) "__annotations__", (getter)__Pyx_CyFunction_get_annotations, (setter)__Pyx_CyFunction_set_annotations, 0, 0}, jpayne@68: {(char *) "_is_coroutine", (getter)__Pyx_CyFunction_get_is_coroutine, 0, 0, 0}, jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: {"__module__", (getter)__Pyx_CyFunction_get_module, (setter)__Pyx_CyFunction_set_module, 0, 0}, jpayne@68: #endif jpayne@68: {0, 0, 0, 0, 0} jpayne@68: }; jpayne@68: static PyMemberDef __pyx_CyFunction_members[] = { jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: {(char *) "__module__", T_OBJECT, offsetof(PyCFunctionObject, m_module), 0, 0}, jpayne@68: #endif jpayne@68: #if CYTHON_USE_TYPE_SPECS jpayne@68: {(char *) "__dictoffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_dict), READONLY, 0}, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_BACKPORT_VECTORCALL jpayne@68: {(char *) "__vectorcalloffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_vectorcall), READONLY, 0}, jpayne@68: #else jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: {(char *) "__vectorcalloffset__", T_PYSSIZET, offsetof(PyCFunctionObject, vectorcall), READONLY, 0}, jpayne@68: #endif jpayne@68: #endif jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x030500A0 || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: {(char *) "__weaklistoffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_weakreflist), READONLY, 0}, jpayne@68: #else jpayne@68: {(char *) "__weaklistoffset__", T_PYSSIZET, offsetof(PyCFunctionObject, m_weakreflist), READONLY, 0}, jpayne@68: #endif jpayne@68: #endif jpayne@68: {0, 0, 0, 0, 0} jpayne@68: }; jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, PyObject *args) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(args); jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: Py_INCREF(m->func_qualname); jpayne@68: return m->func_qualname; jpayne@68: #else jpayne@68: return PyString_FromString(((PyCFunctionObject*)m)->m_ml->ml_name); jpayne@68: #endif jpayne@68: } jpayne@68: static PyMethodDef __pyx_CyFunction_methods[] = { jpayne@68: {"__reduce__", (PyCFunction)__Pyx_CyFunction_reduce, METH_VARARGS, 0}, jpayne@68: {0, 0, 0, 0} jpayne@68: }; jpayne@68: #if PY_VERSION_HEX < 0x030500A0 || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func_weakreflist) jpayne@68: #else jpayne@68: #define __Pyx_CyFunction_weakreflist(cyfunc) (((PyCFunctionObject*)cyfunc)->m_weakreflist) jpayne@68: #endif jpayne@68: static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject *op, PyMethodDef *ml, int flags, PyObject* qualname, jpayne@68: PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) { jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: PyCFunctionObject *cf = (PyCFunctionObject*) op; jpayne@68: #endif jpayne@68: if (unlikely(op == NULL)) jpayne@68: return NULL; jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: op->func = PyCFunction_NewEx(ml, (PyObject*)op, module); jpayne@68: if (unlikely(!op->func)) return NULL; jpayne@68: #endif jpayne@68: op->flags = flags; jpayne@68: __Pyx_CyFunction_weakreflist(op) = NULL; jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: cf->m_ml = ml; jpayne@68: cf->m_self = (PyObject *) op; jpayne@68: #endif jpayne@68: Py_XINCREF(closure); jpayne@68: op->func_closure = closure; jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: Py_XINCREF(module); jpayne@68: cf->m_module = module; jpayne@68: #endif jpayne@68: op->func_dict = NULL; jpayne@68: op->func_name = NULL; jpayne@68: Py_INCREF(qualname); jpayne@68: op->func_qualname = qualname; jpayne@68: op->func_doc = NULL; jpayne@68: #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: op->func_classobj = NULL; jpayne@68: #else jpayne@68: ((PyCMethodObject*)op)->mm_class = NULL; jpayne@68: #endif jpayne@68: op->func_globals = globals; jpayne@68: Py_INCREF(op->func_globals); jpayne@68: Py_XINCREF(code); jpayne@68: op->func_code = code; jpayne@68: op->defaults_pyobjects = 0; jpayne@68: op->defaults_size = 0; jpayne@68: op->defaults = NULL; jpayne@68: op->defaults_tuple = NULL; jpayne@68: op->defaults_kwdict = NULL; jpayne@68: op->defaults_getter = NULL; jpayne@68: op->func_annotations = NULL; jpayne@68: op->func_is_coroutine = NULL; jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: switch (ml->ml_flags & (METH_VARARGS | METH_FASTCALL | METH_NOARGS | METH_O | METH_KEYWORDS | METH_METHOD)) { jpayne@68: case METH_NOARGS: jpayne@68: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_NOARGS; jpayne@68: break; jpayne@68: case METH_O: jpayne@68: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_O; jpayne@68: break; jpayne@68: case METH_METHOD | METH_FASTCALL | METH_KEYWORDS: jpayne@68: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD; jpayne@68: break; jpayne@68: case METH_FASTCALL | METH_KEYWORDS: jpayne@68: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS; jpayne@68: break; jpayne@68: case METH_VARARGS | METH_KEYWORDS: jpayne@68: __Pyx_CyFunction_func_vectorcall(op) = NULL; jpayne@68: break; jpayne@68: default: jpayne@68: PyErr_SetString(PyExc_SystemError, "Bad call flags for CyFunction"); jpayne@68: Py_DECREF(op); jpayne@68: return NULL; jpayne@68: } jpayne@68: #endif jpayne@68: return (PyObject *) op; jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_clear(__pyx_CyFunctionObject *m) jpayne@68: { jpayne@68: Py_CLEAR(m->func_closure); jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: Py_CLEAR(m->func); jpayne@68: #else jpayne@68: Py_CLEAR(((PyCFunctionObject*)m)->m_module); jpayne@68: #endif jpayne@68: Py_CLEAR(m->func_dict); jpayne@68: Py_CLEAR(m->func_name); jpayne@68: Py_CLEAR(m->func_qualname); jpayne@68: Py_CLEAR(m->func_doc); jpayne@68: Py_CLEAR(m->func_globals); jpayne@68: Py_CLEAR(m->func_code); jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #if PY_VERSION_HEX < 0x030900B1 jpayne@68: Py_CLEAR(__Pyx_CyFunction_GetClassObj(m)); jpayne@68: #else jpayne@68: { jpayne@68: PyObject *cls = (PyObject*) ((PyCMethodObject *) (m))->mm_class; jpayne@68: ((PyCMethodObject *) (m))->mm_class = NULL; jpayne@68: Py_XDECREF(cls); jpayne@68: } jpayne@68: #endif jpayne@68: #endif jpayne@68: Py_CLEAR(m->defaults_tuple); jpayne@68: Py_CLEAR(m->defaults_kwdict); jpayne@68: Py_CLEAR(m->func_annotations); jpayne@68: Py_CLEAR(m->func_is_coroutine); jpayne@68: if (m->defaults) { jpayne@68: PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m); jpayne@68: int i; jpayne@68: for (i = 0; i < m->defaults_pyobjects; i++) jpayne@68: Py_XDECREF(pydefaults[i]); jpayne@68: PyObject_Free(m->defaults); jpayne@68: m->defaults = NULL; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: static void __Pyx__CyFunction_dealloc(__pyx_CyFunctionObject *m) jpayne@68: { jpayne@68: if (__Pyx_CyFunction_weakreflist(m) != NULL) jpayne@68: PyObject_ClearWeakRefs((PyObject *) m); jpayne@68: __Pyx_CyFunction_clear(m); jpayne@68: __Pyx_PyHeapTypeObject_GC_Del(m); jpayne@68: } jpayne@68: static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m) jpayne@68: { jpayne@68: PyObject_GC_UnTrack(m); jpayne@68: __Pyx__CyFunction_dealloc(m); jpayne@68: } jpayne@68: static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, void *arg) jpayne@68: { jpayne@68: Py_VISIT(m->func_closure); jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: Py_VISIT(m->func); jpayne@68: #else jpayne@68: Py_VISIT(((PyCFunctionObject*)m)->m_module); jpayne@68: #endif jpayne@68: Py_VISIT(m->func_dict); jpayne@68: Py_VISIT(m->func_name); jpayne@68: Py_VISIT(m->func_qualname); jpayne@68: Py_VISIT(m->func_doc); jpayne@68: Py_VISIT(m->func_globals); jpayne@68: Py_VISIT(m->func_code); jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: Py_VISIT(__Pyx_CyFunction_GetClassObj(m)); jpayne@68: #endif jpayne@68: Py_VISIT(m->defaults_tuple); jpayne@68: Py_VISIT(m->defaults_kwdict); jpayne@68: Py_VISIT(m->func_is_coroutine); jpayne@68: if (m->defaults) { jpayne@68: PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m); jpayne@68: int i; jpayne@68: for (i = 0; i < m->defaults_pyobjects; i++) jpayne@68: Py_VISIT(pydefaults[i]); jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: static PyObject* jpayne@68: __Pyx_CyFunction_repr(__pyx_CyFunctionObject *op) jpayne@68: { jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: return PyUnicode_FromFormat("", jpayne@68: op->func_qualname, (void *)op); jpayne@68: #else jpayne@68: return PyString_FromFormat("", jpayne@68: PyString_AsString(op->func_qualname), (void *)op); jpayne@68: #endif jpayne@68: } jpayne@68: static PyObject * __Pyx_CyFunction_CallMethod(PyObject *func, PyObject *self, PyObject *arg, PyObject *kw) { jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: PyObject *f = ((__pyx_CyFunctionObject*)func)->func; jpayne@68: PyObject *py_name = NULL; jpayne@68: PyCFunction meth; jpayne@68: int flags; jpayne@68: meth = PyCFunction_GetFunction(f); jpayne@68: if (unlikely(!meth)) return NULL; jpayne@68: flags = PyCFunction_GetFlags(f); jpayne@68: if (unlikely(flags < 0)) return NULL; jpayne@68: #else jpayne@68: PyCFunctionObject* f = (PyCFunctionObject*)func; jpayne@68: PyCFunction meth = f->m_ml->ml_meth; jpayne@68: int flags = f->m_ml->ml_flags; jpayne@68: #endif jpayne@68: Py_ssize_t size; jpayne@68: switch (flags & (METH_VARARGS | METH_KEYWORDS | METH_NOARGS | METH_O)) { jpayne@68: case METH_VARARGS: jpayne@68: if (likely(kw == NULL || PyDict_Size(kw) == 0)) jpayne@68: return (*meth)(self, arg); jpayne@68: break; jpayne@68: case METH_VARARGS | METH_KEYWORDS: jpayne@68: return (*(PyCFunctionWithKeywords)(void*)meth)(self, arg, kw); jpayne@68: case METH_NOARGS: jpayne@68: if (likely(kw == NULL || PyDict_Size(kw) == 0)) { jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: size = PyTuple_GET_SIZE(arg); jpayne@68: #else jpayne@68: size = PyTuple_Size(arg); jpayne@68: if (unlikely(size < 0)) return NULL; jpayne@68: #endif jpayne@68: if (likely(size == 0)) jpayne@68: return (*meth)(self, NULL); jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: py_name = __Pyx_CyFunction_get_name((__pyx_CyFunctionObject*)func, NULL); jpayne@68: if (!py_name) return NULL; jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200S() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@68: py_name, size); jpayne@68: Py_DECREF(py_name); jpayne@68: #else jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@68: f->m_ml->ml_name, size); jpayne@68: #endif jpayne@68: return NULL; jpayne@68: } jpayne@68: break; jpayne@68: case METH_O: jpayne@68: if (likely(kw == NULL || PyDict_Size(kw) == 0)) { jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: size = PyTuple_GET_SIZE(arg); jpayne@68: #else jpayne@68: size = PyTuple_Size(arg); jpayne@68: if (unlikely(size < 0)) return NULL; jpayne@68: #endif jpayne@68: if (likely(size == 1)) { jpayne@68: PyObject *result, *arg0; jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS jpayne@68: arg0 = PyTuple_GET_ITEM(arg, 0); jpayne@68: #else jpayne@68: arg0 = __Pyx_PySequence_ITEM(arg, 0); if (unlikely(!arg0)) return NULL; jpayne@68: #endif jpayne@68: result = (*meth)(self, arg0); jpayne@68: #if !(CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS) jpayne@68: Py_DECREF(arg0); jpayne@68: #endif jpayne@68: return result; jpayne@68: } jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: py_name = __Pyx_CyFunction_get_name((__pyx_CyFunctionObject*)func, NULL); jpayne@68: if (!py_name) return NULL; jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200S() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@68: py_name, size); jpayne@68: Py_DECREF(py_name); jpayne@68: #else jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@68: f->m_ml->ml_name, size); jpayne@68: #endif jpayne@68: return NULL; jpayne@68: } jpayne@68: break; jpayne@68: default: jpayne@68: PyErr_SetString(PyExc_SystemError, "Bad call flags for CyFunction"); jpayne@68: return NULL; jpayne@68: } jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: py_name = __Pyx_CyFunction_get_name((__pyx_CyFunctionObject*)func, NULL); jpayne@68: if (!py_name) return NULL; jpayne@68: PyErr_Format(PyExc_TypeError, "%.200S() takes no keyword arguments", jpayne@68: py_name); jpayne@68: Py_DECREF(py_name); jpayne@68: #else jpayne@68: PyErr_Format(PyExc_TypeError, "%.200s() takes no keyword arguments", jpayne@68: f->m_ml->ml_name); jpayne@68: #endif jpayne@68: return NULL; jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject *__Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) { jpayne@68: PyObject *self, *result; jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: self = PyCFunction_GetSelf(((__pyx_CyFunctionObject*)func)->func); jpayne@68: if (unlikely(!self) && PyErr_Occurred()) return NULL; jpayne@68: #else jpayne@68: self = ((PyCFunctionObject*)func)->m_self; jpayne@68: #endif jpayne@68: result = __Pyx_CyFunction_CallMethod(func, self, arg, kw); jpayne@68: return result; jpayne@68: } jpayne@68: static PyObject *__Pyx_CyFunction_CallAsMethod(PyObject *func, PyObject *args, PyObject *kw) { jpayne@68: PyObject *result; jpayne@68: __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *) func; jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: __pyx_vectorcallfunc vc = __Pyx_CyFunction_func_vectorcall(cyfunc); jpayne@68: if (vc) { jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: return __Pyx_PyVectorcall_FastCallDict(func, vc, &PyTuple_GET_ITEM(args, 0), (size_t)PyTuple_GET_SIZE(args), kw); jpayne@68: #else jpayne@68: (void) &__Pyx_PyVectorcall_FastCallDict; jpayne@68: return PyVectorcall_Call(func, args, kw); jpayne@68: #endif jpayne@68: } jpayne@68: #endif jpayne@68: if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) { jpayne@68: Py_ssize_t argc; jpayne@68: PyObject *new_args; jpayne@68: PyObject *self; jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: argc = PyTuple_GET_SIZE(args); jpayne@68: #else jpayne@68: argc = PyTuple_Size(args); jpayne@68: if (unlikely(!argc) < 0) return NULL; jpayne@68: #endif jpayne@68: new_args = PyTuple_GetSlice(args, 1, argc); jpayne@68: if (unlikely(!new_args)) jpayne@68: return NULL; jpayne@68: self = PyTuple_GetItem(args, 0); jpayne@68: if (unlikely(!self)) { jpayne@68: Py_DECREF(new_args); jpayne@68: #if PY_MAJOR_VERSION > 2 jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "unbound method %.200S() needs an argument", jpayne@68: cyfunc->func_qualname); jpayne@68: #else jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "unbound method needs an argument"); jpayne@68: #endif jpayne@68: return NULL; jpayne@68: } jpayne@68: result = __Pyx_CyFunction_CallMethod(func, self, new_args, kw); jpayne@68: Py_DECREF(new_args); jpayne@68: } else { jpayne@68: result = __Pyx_CyFunction_Call(func, args, kw); jpayne@68: } jpayne@68: return result; jpayne@68: } jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: static CYTHON_INLINE int __Pyx_CyFunction_Vectorcall_CheckArgs(__pyx_CyFunctionObject *cyfunc, Py_ssize_t nargs, PyObject *kwnames) jpayne@68: { jpayne@68: int ret = 0; jpayne@68: if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) { jpayne@68: if (unlikely(nargs < 1)) { jpayne@68: PyErr_Format(PyExc_TypeError, "%.200s() needs an argument", jpayne@68: ((PyCFunctionObject*)cyfunc)->m_ml->ml_name); jpayne@68: return -1; jpayne@68: } jpayne@68: ret = 1; jpayne@68: } jpayne@68: if (unlikely(kwnames) && unlikely(PyTuple_GET_SIZE(kwnames))) { jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() takes no keyword arguments", ((PyCFunctionObject*)cyfunc)->m_ml->ml_name); jpayne@68: return -1; jpayne@68: } jpayne@68: return ret; jpayne@68: } jpayne@68: static PyObject * __Pyx_CyFunction_Vectorcall_NOARGS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) jpayne@68: { jpayne@68: __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; jpayne@68: PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; jpayne@68: #if CYTHON_BACKPORT_VECTORCALL jpayne@68: Py_ssize_t nargs = (Py_ssize_t)nargsf; jpayne@68: #else jpayne@68: Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); jpayne@68: #endif jpayne@68: PyObject *self; jpayne@68: switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, kwnames)) { jpayne@68: case 1: jpayne@68: self = args[0]; jpayne@68: args += 1; jpayne@68: nargs -= 1; jpayne@68: break; jpayne@68: case 0: jpayne@68: self = ((PyCFunctionObject*)cyfunc)->m_self; jpayne@68: break; jpayne@68: default: jpayne@68: return NULL; jpayne@68: } jpayne@68: if (unlikely(nargs != 0)) { jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@68: def->ml_name, nargs); jpayne@68: return NULL; jpayne@68: } jpayne@68: return def->ml_meth(self, NULL); jpayne@68: } jpayne@68: static PyObject * __Pyx_CyFunction_Vectorcall_O(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) jpayne@68: { jpayne@68: __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; jpayne@68: PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; jpayne@68: #if CYTHON_BACKPORT_VECTORCALL jpayne@68: Py_ssize_t nargs = (Py_ssize_t)nargsf; jpayne@68: #else jpayne@68: Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); jpayne@68: #endif jpayne@68: PyObject *self; jpayne@68: switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, kwnames)) { jpayne@68: case 1: jpayne@68: self = args[0]; jpayne@68: args += 1; jpayne@68: nargs -= 1; jpayne@68: break; jpayne@68: case 0: jpayne@68: self = ((PyCFunctionObject*)cyfunc)->m_self; jpayne@68: break; jpayne@68: default: jpayne@68: return NULL; jpayne@68: } jpayne@68: if (unlikely(nargs != 1)) { jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@68: def->ml_name, nargs); jpayne@68: return NULL; jpayne@68: } jpayne@68: return def->ml_meth(self, args[0]); jpayne@68: } jpayne@68: static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) jpayne@68: { jpayne@68: __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; jpayne@68: PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; jpayne@68: #if CYTHON_BACKPORT_VECTORCALL jpayne@68: Py_ssize_t nargs = (Py_ssize_t)nargsf; jpayne@68: #else jpayne@68: Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); jpayne@68: #endif jpayne@68: PyObject *self; jpayne@68: switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, NULL)) { jpayne@68: case 1: jpayne@68: self = args[0]; jpayne@68: args += 1; jpayne@68: nargs -= 1; jpayne@68: break; jpayne@68: case 0: jpayne@68: self = ((PyCFunctionObject*)cyfunc)->m_self; jpayne@68: break; jpayne@68: default: jpayne@68: return NULL; jpayne@68: } jpayne@68: return ((__Pyx_PyCFunctionFastWithKeywords)(void(*)(void))def->ml_meth)(self, args, nargs, kwnames); jpayne@68: } jpayne@68: static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) jpayne@68: { jpayne@68: __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; jpayne@68: PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; jpayne@68: PyTypeObject *cls = (PyTypeObject *) __Pyx_CyFunction_GetClassObj(cyfunc); jpayne@68: #if CYTHON_BACKPORT_VECTORCALL jpayne@68: Py_ssize_t nargs = (Py_ssize_t)nargsf; jpayne@68: #else jpayne@68: Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); jpayne@68: #endif jpayne@68: PyObject *self; jpayne@68: switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, NULL)) { jpayne@68: case 1: jpayne@68: self = args[0]; jpayne@68: args += 1; jpayne@68: nargs -= 1; jpayne@68: break; jpayne@68: case 0: jpayne@68: self = ((PyCFunctionObject*)cyfunc)->m_self; jpayne@68: break; jpayne@68: default: jpayne@68: return NULL; jpayne@68: } jpayne@68: return ((__Pyx_PyCMethod)(void(*)(void))def->ml_meth)(self, cls, args, (size_t)nargs, kwnames); jpayne@68: } jpayne@68: #endif jpayne@68: #if CYTHON_USE_TYPE_SPECS jpayne@68: static PyType_Slot __pyx_CyFunctionType_slots[] = { jpayne@68: {Py_tp_dealloc, (void *)__Pyx_CyFunction_dealloc}, jpayne@68: {Py_tp_repr, (void *)__Pyx_CyFunction_repr}, jpayne@68: {Py_tp_call, (void *)__Pyx_CyFunction_CallAsMethod}, jpayne@68: {Py_tp_traverse, (void *)__Pyx_CyFunction_traverse}, jpayne@68: {Py_tp_clear, (void *)__Pyx_CyFunction_clear}, jpayne@68: {Py_tp_methods, (void *)__pyx_CyFunction_methods}, jpayne@68: {Py_tp_members, (void *)__pyx_CyFunction_members}, jpayne@68: {Py_tp_getset, (void *)__pyx_CyFunction_getsets}, jpayne@68: {Py_tp_descr_get, (void *)__Pyx_PyMethod_New}, jpayne@68: {0, 0}, jpayne@68: }; jpayne@68: static PyType_Spec __pyx_CyFunctionType_spec = { jpayne@68: __PYX_TYPE_MODULE_PREFIX "cython_function_or_method", jpayne@68: sizeof(__pyx_CyFunctionObject), jpayne@68: 0, jpayne@68: #ifdef Py_TPFLAGS_METHOD_DESCRIPTOR jpayne@68: Py_TPFLAGS_METHOD_DESCRIPTOR | jpayne@68: #endif jpayne@68: #if (defined(_Py_TPFLAGS_HAVE_VECTORCALL) && CYTHON_METH_FASTCALL) jpayne@68: _Py_TPFLAGS_HAVE_VECTORCALL | jpayne@68: #endif jpayne@68: Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC | Py_TPFLAGS_BASETYPE, jpayne@68: __pyx_CyFunctionType_slots jpayne@68: }; jpayne@68: #else jpayne@68: static PyTypeObject __pyx_CyFunctionType_type = { jpayne@68: PyVarObject_HEAD_INIT(0, 0) jpayne@68: __PYX_TYPE_MODULE_PREFIX "cython_function_or_method", jpayne@68: sizeof(__pyx_CyFunctionObject), jpayne@68: 0, jpayne@68: (destructor) __Pyx_CyFunction_dealloc, jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: 0, jpayne@68: #elif CYTHON_BACKPORT_VECTORCALL jpayne@68: (printfunc)offsetof(__pyx_CyFunctionObject, func_vectorcall), jpayne@68: #else jpayne@68: offsetof(PyCFunctionObject, vectorcall), jpayne@68: #endif jpayne@68: 0, jpayne@68: 0, jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: 0, jpayne@68: #else jpayne@68: 0, jpayne@68: #endif jpayne@68: (reprfunc) __Pyx_CyFunction_repr, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: __Pyx_CyFunction_CallAsMethod, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: #ifdef Py_TPFLAGS_METHOD_DESCRIPTOR jpayne@68: Py_TPFLAGS_METHOD_DESCRIPTOR | jpayne@68: #endif jpayne@68: #if defined(_Py_TPFLAGS_HAVE_VECTORCALL) && CYTHON_METH_FASTCALL jpayne@68: _Py_TPFLAGS_HAVE_VECTORCALL | jpayne@68: #endif jpayne@68: Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC | Py_TPFLAGS_BASETYPE, jpayne@68: 0, jpayne@68: (traverseproc) __Pyx_CyFunction_traverse, jpayne@68: (inquiry) __Pyx_CyFunction_clear, jpayne@68: 0, jpayne@68: #if PY_VERSION_HEX < 0x030500A0 jpayne@68: offsetof(__pyx_CyFunctionObject, func_weakreflist), jpayne@68: #else jpayne@68: offsetof(PyCFunctionObject, m_weakreflist), jpayne@68: #endif jpayne@68: 0, jpayne@68: 0, jpayne@68: __pyx_CyFunction_methods, jpayne@68: __pyx_CyFunction_members, jpayne@68: __pyx_CyFunction_getsets, jpayne@68: 0, jpayne@68: 0, jpayne@68: __Pyx_PyMethod_New, jpayne@68: 0, jpayne@68: offsetof(__pyx_CyFunctionObject, func_dict), jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: #if PY_VERSION_HEX >= 0x030400a1 jpayne@68: 0, jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) jpayne@68: 0, jpayne@68: #endif jpayne@68: #if __PYX_NEED_TP_PRINT_SLOT jpayne@68: 0, jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030C0000 jpayne@68: 0, jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030d00A4 jpayne@68: 0, jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 jpayne@68: 0, jpayne@68: #endif jpayne@68: }; jpayne@68: #endif jpayne@68: static int __pyx_CyFunction_init(PyObject *module) { jpayne@68: #if CYTHON_USE_TYPE_SPECS jpayne@68: __pyx_CyFunctionType = __Pyx_FetchCommonTypeFromSpec(module, &__pyx_CyFunctionType_spec, NULL); jpayne@68: #else jpayne@68: CYTHON_UNUSED_VAR(module); jpayne@68: __pyx_CyFunctionType = __Pyx_FetchCommonType(&__pyx_CyFunctionType_type); jpayne@68: #endif jpayne@68: if (unlikely(__pyx_CyFunctionType == NULL)) { jpayne@68: return -1; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects) { jpayne@68: __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; jpayne@68: m->defaults = PyObject_Malloc(size); jpayne@68: if (unlikely(!m->defaults)) jpayne@68: return PyErr_NoMemory(); jpayne@68: memset(m->defaults, 0, size); jpayne@68: m->defaults_pyobjects = pyobjects; jpayne@68: m->defaults_size = size; jpayne@68: return m->defaults; jpayne@68: } jpayne@68: static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) { jpayne@68: __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; jpayne@68: m->defaults_tuple = tuple; jpayne@68: Py_INCREF(tuple); jpayne@68: } jpayne@68: static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *func, PyObject *dict) { jpayne@68: __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; jpayne@68: m->defaults_kwdict = dict; jpayne@68: Py_INCREF(dict); jpayne@68: } jpayne@68: static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, PyObject *dict) { jpayne@68: __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; jpayne@68: m->func_annotations = dict; jpayne@68: Py_INCREF(dict); jpayne@68: } jpayne@68: jpayne@68: /* CythonFunction */ jpayne@68: static PyObject *__Pyx_CyFunction_New(PyMethodDef *ml, int flags, PyObject* qualname, jpayne@68: PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) { jpayne@68: PyObject *op = __Pyx_CyFunction_Init( jpayne@68: PyObject_GC_New(__pyx_CyFunctionObject, __pyx_CyFunctionType), jpayne@68: ml, flags, qualname, closure, module, globals, code jpayne@68: ); jpayne@68: if (likely(op)) { jpayne@68: PyObject_GC_Track(op); jpayne@68: } jpayne@68: return op; jpayne@68: } jpayne@68: jpayne@68: /* CLineInTraceback */ jpayne@68: #ifndef CYTHON_CLINE_IN_TRACEBACK jpayne@68: static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line) { jpayne@68: PyObject *use_cline; jpayne@68: PyObject *ptype, *pvalue, *ptraceback; jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: PyObject **cython_runtime_dict; jpayne@68: #endif jpayne@68: CYTHON_MAYBE_UNUSED_VAR(tstate); jpayne@68: if (unlikely(!__pyx_cython_runtime)) { jpayne@68: return c_line; jpayne@68: } jpayne@68: __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback); jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime); jpayne@68: if (likely(cython_runtime_dict)) { jpayne@68: __PYX_PY_DICT_LOOKUP_IF_MODIFIED( jpayne@68: use_cline, *cython_runtime_dict, jpayne@68: __Pyx_PyDict_GetItemStr(*cython_runtime_dict, __pyx_n_s_cline_in_traceback)) jpayne@68: } else jpayne@68: #endif jpayne@68: { jpayne@68: PyObject *use_cline_obj = __Pyx_PyObject_GetAttrStrNoError(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback); jpayne@68: if (use_cline_obj) { jpayne@68: use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True; jpayne@68: Py_DECREF(use_cline_obj); jpayne@68: } else { jpayne@68: PyErr_Clear(); jpayne@68: use_cline = NULL; jpayne@68: } jpayne@68: } jpayne@68: if (!use_cline) { jpayne@68: c_line = 0; jpayne@68: (void) PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False); jpayne@68: } jpayne@68: else if (use_cline == Py_False || (use_cline != Py_True && PyObject_Not(use_cline) != 0)) { jpayne@68: c_line = 0; jpayne@68: } jpayne@68: __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback); jpayne@68: return c_line; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* CodeObjectCache */ jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { jpayne@68: int start = 0, mid = 0, end = count - 1; jpayne@68: if (end >= 0 && code_line > entries[end].code_line) { jpayne@68: return count; jpayne@68: } jpayne@68: while (start < end) { jpayne@68: mid = start + (end - start) / 2; jpayne@68: if (code_line < entries[mid].code_line) { jpayne@68: end = mid; jpayne@68: } else if (code_line > entries[mid].code_line) { jpayne@68: start = mid + 1; jpayne@68: } else { jpayne@68: return mid; jpayne@68: } jpayne@68: } jpayne@68: if (code_line <= entries[mid].code_line) { jpayne@68: return mid; jpayne@68: } else { jpayne@68: return mid + 1; jpayne@68: } jpayne@68: } jpayne@68: static PyCodeObject *__pyx_find_code_object(int code_line) { jpayne@68: PyCodeObject* code_object; jpayne@68: int pos; jpayne@68: if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { jpayne@68: return NULL; jpayne@68: } jpayne@68: pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); jpayne@68: if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { jpayne@68: return NULL; jpayne@68: } jpayne@68: code_object = __pyx_code_cache.entries[pos].code_object; jpayne@68: Py_INCREF(code_object); jpayne@68: return code_object; jpayne@68: } jpayne@68: static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { jpayne@68: int pos, i; jpayne@68: __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; jpayne@68: if (unlikely(!code_line)) { jpayne@68: return; jpayne@68: } jpayne@68: if (unlikely(!entries)) { jpayne@68: entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); jpayne@68: if (likely(entries)) { jpayne@68: __pyx_code_cache.entries = entries; jpayne@68: __pyx_code_cache.max_count = 64; jpayne@68: __pyx_code_cache.count = 1; jpayne@68: entries[0].code_line = code_line; jpayne@68: entries[0].code_object = code_object; jpayne@68: Py_INCREF(code_object); jpayne@68: } jpayne@68: return; jpayne@68: } jpayne@68: pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); jpayne@68: if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { jpayne@68: PyCodeObject* tmp = entries[pos].code_object; jpayne@68: entries[pos].code_object = code_object; jpayne@68: Py_DECREF(tmp); jpayne@68: return; jpayne@68: } jpayne@68: if (__pyx_code_cache.count == __pyx_code_cache.max_count) { jpayne@68: int new_max = __pyx_code_cache.max_count + 64; jpayne@68: entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( jpayne@68: __pyx_code_cache.entries, ((size_t)new_max) * sizeof(__Pyx_CodeObjectCacheEntry)); jpayne@68: if (unlikely(!entries)) { jpayne@68: return; jpayne@68: } jpayne@68: __pyx_code_cache.entries = entries; jpayne@68: __pyx_code_cache.max_count = new_max; jpayne@68: } jpayne@68: for (i=__pyx_code_cache.count; i>pos; i--) { jpayne@68: entries[i] = entries[i-1]; jpayne@68: } jpayne@68: entries[pos].code_line = code_line; jpayne@68: entries[pos].code_object = code_object; jpayne@68: __pyx_code_cache.count++; jpayne@68: Py_INCREF(code_object); jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* AddTraceback */ jpayne@68: #include "compile.h" jpayne@68: #include "frameobject.h" jpayne@68: #include "traceback.h" jpayne@68: #if PY_VERSION_HEX >= 0x030b00a6 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #ifndef Py_BUILD_CORE jpayne@68: #define Py_BUILD_CORE 1 jpayne@68: #endif jpayne@68: #include "internal/pycore_frame.h" jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static PyObject *__Pyx_PyCode_Replace_For_AddTraceback(PyObject *code, PyObject *scratch_dict, jpayne@68: PyObject *firstlineno, PyObject *name) { jpayne@68: PyObject *replace = NULL; jpayne@68: if (unlikely(PyDict_SetItemString(scratch_dict, "co_firstlineno", firstlineno))) return NULL; jpayne@68: if (unlikely(PyDict_SetItemString(scratch_dict, "co_name", name))) return NULL; jpayne@68: replace = PyObject_GetAttrString(code, "replace"); jpayne@68: if (likely(replace)) { jpayne@68: PyObject *result; jpayne@68: result = PyObject_Call(replace, __pyx_empty_tuple, scratch_dict); jpayne@68: Py_DECREF(replace); jpayne@68: return result; jpayne@68: } jpayne@68: PyErr_Clear(); jpayne@68: #if __PYX_LIMITED_VERSION_HEX < 0x030780000 jpayne@68: { jpayne@68: PyObject *compiled = NULL, *result = NULL; jpayne@68: if (unlikely(PyDict_SetItemString(scratch_dict, "code", code))) return NULL; jpayne@68: if (unlikely(PyDict_SetItemString(scratch_dict, "type", (PyObject*)(&PyType_Type)))) return NULL; jpayne@68: compiled = Py_CompileString( jpayne@68: "out = type(code)(\n" jpayne@68: " code.co_argcount, code.co_kwonlyargcount, code.co_nlocals, code.co_stacksize,\n" jpayne@68: " code.co_flags, code.co_code, code.co_consts, code.co_names,\n" jpayne@68: " code.co_varnames, code.co_filename, co_name, co_firstlineno,\n" jpayne@68: " code.co_lnotab)\n", "", Py_file_input); jpayne@68: if (!compiled) return NULL; jpayne@68: result = PyEval_EvalCode(compiled, scratch_dict, scratch_dict); jpayne@68: Py_DECREF(compiled); jpayne@68: if (!result) PyErr_Print(); jpayne@68: Py_DECREF(result); jpayne@68: result = PyDict_GetItemString(scratch_dict, "out"); jpayne@68: if (result) Py_INCREF(result); jpayne@68: return result; jpayne@68: } jpayne@68: #else jpayne@68: return NULL; jpayne@68: #endif jpayne@68: } jpayne@68: static void __Pyx_AddTraceback(const char *funcname, int c_line, jpayne@68: int py_line, const char *filename) { jpayne@68: PyObject *code_object = NULL, *py_py_line = NULL, *py_funcname = NULL, *dict = NULL; jpayne@68: PyObject *replace = NULL, *getframe = NULL, *frame = NULL; jpayne@68: PyObject *exc_type, *exc_value, *exc_traceback; jpayne@68: int success = 0; jpayne@68: if (c_line) { jpayne@68: (void) __pyx_cfilenm; jpayne@68: (void) __Pyx_CLineForTraceback(__Pyx_PyThreadState_Current, c_line); jpayne@68: } jpayne@68: PyErr_Fetch(&exc_type, &exc_value, &exc_traceback); jpayne@68: code_object = Py_CompileString("_getframe()", filename, Py_eval_input); jpayne@68: if (unlikely(!code_object)) goto bad; jpayne@68: py_py_line = PyLong_FromLong(py_line); jpayne@68: if (unlikely(!py_py_line)) goto bad; jpayne@68: py_funcname = PyUnicode_FromString(funcname); jpayne@68: if (unlikely(!py_funcname)) goto bad; jpayne@68: dict = PyDict_New(); jpayne@68: if (unlikely(!dict)) goto bad; jpayne@68: { jpayne@68: PyObject *old_code_object = code_object; jpayne@68: code_object = __Pyx_PyCode_Replace_For_AddTraceback(code_object, dict, py_py_line, py_funcname); jpayne@68: Py_DECREF(old_code_object); jpayne@68: } jpayne@68: if (unlikely(!code_object)) goto bad; jpayne@68: getframe = PySys_GetObject("_getframe"); jpayne@68: if (unlikely(!getframe)) goto bad; jpayne@68: if (unlikely(PyDict_SetItemString(dict, "_getframe", getframe))) goto bad; jpayne@68: frame = PyEval_EvalCode(code_object, dict, dict); jpayne@68: if (unlikely(!frame) || frame == Py_None) goto bad; jpayne@68: success = 1; jpayne@68: bad: jpayne@68: PyErr_Restore(exc_type, exc_value, exc_traceback); jpayne@68: Py_XDECREF(code_object); jpayne@68: Py_XDECREF(py_py_line); jpayne@68: Py_XDECREF(py_funcname); jpayne@68: Py_XDECREF(dict); jpayne@68: Py_XDECREF(replace); jpayne@68: if (success) { jpayne@68: PyTraceBack_Here( jpayne@68: (struct _frame*)frame); jpayne@68: } jpayne@68: Py_XDECREF(frame); jpayne@68: } jpayne@68: #else jpayne@68: static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( jpayne@68: const char *funcname, int c_line, jpayne@68: int py_line, const char *filename) { jpayne@68: PyCodeObject *py_code = NULL; jpayne@68: PyObject *py_funcname = NULL; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: PyObject *py_srcfile = NULL; jpayne@68: py_srcfile = PyString_FromString(filename); jpayne@68: if (!py_srcfile) goto bad; jpayne@68: #endif jpayne@68: if (c_line) { jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); jpayne@68: if (!py_funcname) goto bad; jpayne@68: #else jpayne@68: py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); jpayne@68: if (!py_funcname) goto bad; jpayne@68: funcname = PyUnicode_AsUTF8(py_funcname); jpayne@68: if (!funcname) goto bad; jpayne@68: #endif jpayne@68: } jpayne@68: else { jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: py_funcname = PyString_FromString(funcname); jpayne@68: if (!py_funcname) goto bad; jpayne@68: #endif jpayne@68: } jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: py_code = __Pyx_PyCode_New( jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: __pyx_empty_bytes, /*PyObject *code,*/ jpayne@68: __pyx_empty_tuple, /*PyObject *consts,*/ jpayne@68: __pyx_empty_tuple, /*PyObject *names,*/ jpayne@68: __pyx_empty_tuple, /*PyObject *varnames,*/ jpayne@68: __pyx_empty_tuple, /*PyObject *freevars,*/ jpayne@68: __pyx_empty_tuple, /*PyObject *cellvars,*/ jpayne@68: py_srcfile, /*PyObject *filename,*/ jpayne@68: py_funcname, /*PyObject *name,*/ jpayne@68: py_line, jpayne@68: __pyx_empty_bytes /*PyObject *lnotab*/ jpayne@68: ); jpayne@68: Py_DECREF(py_srcfile); jpayne@68: #else jpayne@68: py_code = PyCode_NewEmpty(filename, funcname, py_line); jpayne@68: #endif jpayne@68: Py_XDECREF(py_funcname); jpayne@68: return py_code; jpayne@68: bad: jpayne@68: Py_XDECREF(py_funcname); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: Py_XDECREF(py_srcfile); jpayne@68: #endif jpayne@68: return NULL; jpayne@68: } jpayne@68: static void __Pyx_AddTraceback(const char *funcname, int c_line, jpayne@68: int py_line, const char *filename) { jpayne@68: PyCodeObject *py_code = 0; jpayne@68: PyFrameObject *py_frame = 0; jpayne@68: PyThreadState *tstate = __Pyx_PyThreadState_Current; jpayne@68: PyObject *ptype, *pvalue, *ptraceback; jpayne@68: if (c_line) { jpayne@68: c_line = __Pyx_CLineForTraceback(tstate, c_line); jpayne@68: } jpayne@68: py_code = __pyx_find_code_object(c_line ? -c_line : py_line); jpayne@68: if (!py_code) { jpayne@68: __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback); jpayne@68: py_code = __Pyx_CreateCodeObjectForTraceback( jpayne@68: funcname, c_line, py_line, filename); jpayne@68: if (!py_code) { jpayne@68: /* If the code object creation fails, then we should clear the jpayne@68: fetched exception references and propagate the new exception */ jpayne@68: Py_XDECREF(ptype); jpayne@68: Py_XDECREF(pvalue); jpayne@68: Py_XDECREF(ptraceback); jpayne@68: goto bad; jpayne@68: } jpayne@68: __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback); jpayne@68: __pyx_insert_code_object(c_line ? -c_line : py_line, py_code); jpayne@68: } jpayne@68: py_frame = PyFrame_New( jpayne@68: tstate, /*PyThreadState *tstate,*/ jpayne@68: py_code, /*PyCodeObject *code,*/ jpayne@68: __pyx_d, /*PyObject *globals,*/ jpayne@68: 0 /*PyObject *locals*/ jpayne@68: ); jpayne@68: if (!py_frame) goto bad; jpayne@68: __Pyx_PyFrame_SetLineNumber(py_frame, py_line); jpayne@68: PyTraceBack_Here(py_frame); jpayne@68: bad: jpayne@68: Py_XDECREF(py_code); jpayne@68: Py_XDECREF(py_frame); jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* CIntFromPyVerify */ jpayne@68: #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ jpayne@68: __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) jpayne@68: #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ jpayne@68: __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) jpayne@68: #define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\ jpayne@68: {\ jpayne@68: func_type value = func_value;\ jpayne@68: if (sizeof(target_type) < sizeof(func_type)) {\ jpayne@68: if (unlikely(value != (func_type) (target_type) value)) {\ jpayne@68: func_type zero = 0;\ jpayne@68: if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\ jpayne@68: return (target_type) -1;\ jpayne@68: if (is_unsigned && unlikely(value < zero))\ jpayne@68: goto raise_neg_overflow;\ jpayne@68: else\ jpayne@68: goto raise_overflow;\ jpayne@68: }\ jpayne@68: }\ jpayne@68: return (target_type) value;\ jpayne@68: } jpayne@68: jpayne@68: /* CIntToPy */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_int(unsigned int value) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const unsigned int neg_one = (unsigned int) -1, const_zero = (unsigned int) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: if (is_unsigned) { jpayne@68: if (sizeof(unsigned int) < sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: } else if (sizeof(unsigned int) <= sizeof(unsigned long)) { jpayne@68: return PyLong_FromUnsignedLong((unsigned long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(unsigned int) <= sizeof(unsigned PY_LONG_LONG)) { jpayne@68: return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: if (sizeof(unsigned int) <= sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(unsigned int) <= sizeof(PY_LONG_LONG)) { jpayne@68: return PyLong_FromLongLong((PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: unsigned char *bytes = (unsigned char *)&value; jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 jpayne@68: if (is_unsigned) { jpayne@68: return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); jpayne@68: } else { jpayne@68: return PyLong_FromNativeBytes(bytes, sizeof(value), -1); jpayne@68: } jpayne@68: #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: return _PyLong_FromByteArray(bytes, sizeof(unsigned int), jpayne@68: little, !is_unsigned); jpayne@68: #else jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: PyObject *from_bytes, *result = NULL; jpayne@68: PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; jpayne@68: from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); jpayne@68: if (!from_bytes) return NULL; jpayne@68: py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(unsigned int)); jpayne@68: if (!py_bytes) goto limited_bad; jpayne@68: order_str = PyUnicode_FromString(little ? "little" : "big"); jpayne@68: if (!order_str) goto limited_bad; jpayne@68: arg_tuple = PyTuple_Pack(2, py_bytes, order_str); jpayne@68: if (!arg_tuple) goto limited_bad; jpayne@68: if (!is_unsigned) { jpayne@68: kwds = PyDict_New(); jpayne@68: if (!kwds) goto limited_bad; jpayne@68: if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; jpayne@68: } jpayne@68: result = PyObject_Call(from_bytes, arg_tuple, kwds); jpayne@68: limited_bad: jpayne@68: Py_XDECREF(kwds); jpayne@68: Py_XDECREF(arg_tuple); jpayne@68: Py_XDECREF(order_str); jpayne@68: Py_XDECREF(py_bytes); jpayne@68: Py_XDECREF(from_bytes); jpayne@68: return result; jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* CIntFromPy */ jpayne@68: static CYTHON_INLINE size_t __Pyx_PyInt_As_size_t(PyObject *x) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const size_t neg_one = (size_t) -1, const_zero = (size_t) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(PyInt_Check(x))) { jpayne@68: if ((sizeof(size_t) < sizeof(long))) { jpayne@68: __PYX_VERIFY_RETURN_INT(size_t, long, PyInt_AS_LONG(x)) jpayne@68: } else { jpayne@68: long val = PyInt_AS_LONG(x); jpayne@68: if (is_unsigned && unlikely(val < 0)) { jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: return (size_t) val; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: if (unlikely(!PyLong_Check(x))) { jpayne@68: size_t val; jpayne@68: PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); jpayne@68: if (!tmp) return (size_t) -1; jpayne@68: val = __Pyx_PyInt_As_size_t(tmp); jpayne@68: Py_DECREF(tmp); jpayne@68: return val; jpayne@68: } jpayne@68: if (is_unsigned) { jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (unlikely(__Pyx_PyLong_IsNeg(x))) { jpayne@68: goto raise_neg_overflow; jpayne@68: } else if (__Pyx_PyLong_IsCompact(x)) { jpayne@68: __PYX_VERIFY_RETURN_INT(size_t, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@68: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@68: switch (__Pyx_PyLong_DigitCount(x)) { jpayne@68: case 2: jpayne@68: if ((8 * sizeof(size_t) > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(size_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(size_t) >= 2 * PyLong_SHIFT)) { jpayne@68: return (size_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 3: jpayne@68: if ((8 * sizeof(size_t) > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(size_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(size_t) >= 3 * PyLong_SHIFT)) { jpayne@68: return (size_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 4: jpayne@68: if ((8 * sizeof(size_t) > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(size_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(size_t) >= 4 * PyLong_SHIFT)) { jpayne@68: return (size_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 jpayne@68: if (unlikely(Py_SIZE(x) < 0)) { jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: #else jpayne@68: { jpayne@68: int result = PyObject_RichCompareBool(x, Py_False, Py_LT); jpayne@68: if (unlikely(result < 0)) jpayne@68: return (size_t) -1; jpayne@68: if (unlikely(result == 1)) jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: #endif jpayne@68: if ((sizeof(size_t) <= sizeof(unsigned long))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(size_t, unsigned long, PyLong_AsUnsignedLong(x)) jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if ((sizeof(size_t) <= sizeof(unsigned PY_LONG_LONG))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(size_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (__Pyx_PyLong_IsCompact(x)) { jpayne@68: __PYX_VERIFY_RETURN_INT(size_t, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@68: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@68: switch (__Pyx_PyLong_SignedDigitCount(x)) { jpayne@68: case -2: jpayne@68: if ((8 * sizeof(size_t) - 1 > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(size_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(size_t) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: return (size_t) (((size_t)-1)*(((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 2: jpayne@68: if ((8 * sizeof(size_t) > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(size_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(size_t) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: return (size_t) ((((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case -3: jpayne@68: if ((8 * sizeof(size_t) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(size_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(size_t) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: return (size_t) (((size_t)-1)*(((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 3: jpayne@68: if ((8 * sizeof(size_t) > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(size_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(size_t) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: return (size_t) ((((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case -4: jpayne@68: if ((8 * sizeof(size_t) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(size_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(size_t) - 1 > 4 * PyLong_SHIFT)) { jpayne@68: return (size_t) (((size_t)-1)*(((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 4: jpayne@68: if ((8 * sizeof(size_t) > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(size_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(size_t) - 1 > 4 * PyLong_SHIFT)) { jpayne@68: return (size_t) ((((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: if ((sizeof(size_t) <= sizeof(long))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(size_t, long, PyLong_AsLong(x)) jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if ((sizeof(size_t) <= sizeof(PY_LONG_LONG))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(size_t, PY_LONG_LONG, PyLong_AsLongLong(x)) jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: size_t val; jpayne@68: int ret = -1; jpayne@68: #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: Py_ssize_t bytes_copied = PyLong_AsNativeBytes( jpayne@68: x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); jpayne@68: if (unlikely(bytes_copied == -1)) { jpayne@68: } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { jpayne@68: goto raise_overflow; jpayne@68: } else { jpayne@68: ret = 0; jpayne@68: } jpayne@68: #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) jpayne@68: int one = 1; int is_little = (int)*(unsigned char *)&one; jpayne@68: unsigned char *bytes = (unsigned char *)&val; jpayne@68: ret = _PyLong_AsByteArray((PyLongObject *)x, jpayne@68: bytes, sizeof(val), jpayne@68: is_little, !is_unsigned); jpayne@68: #else jpayne@68: PyObject *v; jpayne@68: PyObject *stepval = NULL, *mask = NULL, *shift = NULL; jpayne@68: int bits, remaining_bits, is_negative = 0; jpayne@68: int chunk_size = (sizeof(long) < 8) ? 30 : 62; jpayne@68: if (likely(PyLong_CheckExact(x))) { jpayne@68: v = __Pyx_NewRef(x); jpayne@68: } else { jpayne@68: v = PyNumber_Long(x); jpayne@68: if (unlikely(!v)) return (size_t) -1; jpayne@68: assert(PyLong_CheckExact(v)); jpayne@68: } jpayne@68: { jpayne@68: int result = PyObject_RichCompareBool(v, Py_False, Py_LT); jpayne@68: if (unlikely(result < 0)) { jpayne@68: Py_DECREF(v); jpayne@68: return (size_t) -1; jpayne@68: } jpayne@68: is_negative = result == 1; jpayne@68: } jpayne@68: if (is_unsigned && unlikely(is_negative)) { jpayne@68: Py_DECREF(v); jpayne@68: goto raise_neg_overflow; jpayne@68: } else if (is_negative) { jpayne@68: stepval = PyNumber_Invert(v); jpayne@68: Py_DECREF(v); jpayne@68: if (unlikely(!stepval)) jpayne@68: return (size_t) -1; jpayne@68: } else { jpayne@68: stepval = v; jpayne@68: } jpayne@68: v = NULL; jpayne@68: val = (size_t) 0; jpayne@68: mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; jpayne@68: shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; jpayne@68: for (bits = 0; bits < (int) sizeof(size_t) * 8 - chunk_size; bits += chunk_size) { jpayne@68: PyObject *tmp, *digit; jpayne@68: long idigit; jpayne@68: digit = PyNumber_And(stepval, mask); jpayne@68: if (unlikely(!digit)) goto done; jpayne@68: idigit = PyLong_AsLong(digit); jpayne@68: Py_DECREF(digit); jpayne@68: if (unlikely(idigit < 0)) goto done; jpayne@68: val |= ((size_t) idigit) << bits; jpayne@68: tmp = PyNumber_Rshift(stepval, shift); jpayne@68: if (unlikely(!tmp)) goto done; jpayne@68: Py_DECREF(stepval); stepval = tmp; jpayne@68: } jpayne@68: Py_DECREF(shift); shift = NULL; jpayne@68: Py_DECREF(mask); mask = NULL; jpayne@68: { jpayne@68: long idigit = PyLong_AsLong(stepval); jpayne@68: if (unlikely(idigit < 0)) goto done; jpayne@68: remaining_bits = ((int) sizeof(size_t) * 8) - bits - (is_unsigned ? 0 : 1); jpayne@68: if (unlikely(idigit >= (1L << remaining_bits))) jpayne@68: goto raise_overflow; jpayne@68: val |= ((size_t) idigit) << bits; jpayne@68: } jpayne@68: if (!is_unsigned) { jpayne@68: if (unlikely(val & (((size_t) 1) << (sizeof(size_t) * 8 - 1)))) jpayne@68: goto raise_overflow; jpayne@68: if (is_negative) jpayne@68: val = ~val; jpayne@68: } jpayne@68: ret = 0; jpayne@68: done: jpayne@68: Py_XDECREF(shift); jpayne@68: Py_XDECREF(mask); jpayne@68: Py_XDECREF(stepval); jpayne@68: #endif jpayne@68: if (unlikely(ret)) jpayne@68: return (size_t) -1; jpayne@68: return val; jpayne@68: } jpayne@68: raise_overflow: jpayne@68: PyErr_SetString(PyExc_OverflowError, jpayne@68: "value too large to convert to size_t"); jpayne@68: return (size_t) -1; jpayne@68: raise_neg_overflow: jpayne@68: PyErr_SetString(PyExc_OverflowError, jpayne@68: "can't convert negative value to size_t"); jpayne@68: return (size_t) -1; jpayne@68: } jpayne@68: jpayne@68: /* CIntToPy */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const int neg_one = (int) -1, const_zero = (int) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: if (is_unsigned) { jpayne@68: if (sizeof(int) < sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: } else if (sizeof(int) <= sizeof(unsigned long)) { jpayne@68: return PyLong_FromUnsignedLong((unsigned long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { jpayne@68: return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: if (sizeof(int) <= sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { jpayne@68: return PyLong_FromLongLong((PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: unsigned char *bytes = (unsigned char *)&value; jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 jpayne@68: if (is_unsigned) { jpayne@68: return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); jpayne@68: } else { jpayne@68: return PyLong_FromNativeBytes(bytes, sizeof(value), -1); jpayne@68: } jpayne@68: #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: return _PyLong_FromByteArray(bytes, sizeof(int), jpayne@68: little, !is_unsigned); jpayne@68: #else jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: PyObject *from_bytes, *result = NULL; jpayne@68: PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; jpayne@68: from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); jpayne@68: if (!from_bytes) return NULL; jpayne@68: py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(int)); jpayne@68: if (!py_bytes) goto limited_bad; jpayne@68: order_str = PyUnicode_FromString(little ? "little" : "big"); jpayne@68: if (!order_str) goto limited_bad; jpayne@68: arg_tuple = PyTuple_Pack(2, py_bytes, order_str); jpayne@68: if (!arg_tuple) goto limited_bad; jpayne@68: if (!is_unsigned) { jpayne@68: kwds = PyDict_New(); jpayne@68: if (!kwds) goto limited_bad; jpayne@68: if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; jpayne@68: } jpayne@68: result = PyObject_Call(from_bytes, arg_tuple, kwds); jpayne@68: limited_bad: jpayne@68: Py_XDECREF(kwds); jpayne@68: Py_XDECREF(arg_tuple); jpayne@68: Py_XDECREF(order_str); jpayne@68: Py_XDECREF(py_bytes); jpayne@68: Py_XDECREF(from_bytes); jpayne@68: return result; jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* CIntToPy */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int64_t(int64_t value) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const int64_t neg_one = (int64_t) -1, const_zero = (int64_t) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: if (is_unsigned) { jpayne@68: if (sizeof(int64_t) < sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: } else if (sizeof(int64_t) <= sizeof(unsigned long)) { jpayne@68: return PyLong_FromUnsignedLong((unsigned long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(int64_t) <= sizeof(unsigned PY_LONG_LONG)) { jpayne@68: return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: if (sizeof(int64_t) <= sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(int64_t) <= sizeof(PY_LONG_LONG)) { jpayne@68: return PyLong_FromLongLong((PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: unsigned char *bytes = (unsigned char *)&value; jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 jpayne@68: if (is_unsigned) { jpayne@68: return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); jpayne@68: } else { jpayne@68: return PyLong_FromNativeBytes(bytes, sizeof(value), -1); jpayne@68: } jpayne@68: #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: return _PyLong_FromByteArray(bytes, sizeof(int64_t), jpayne@68: little, !is_unsigned); jpayne@68: #else jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: PyObject *from_bytes, *result = NULL; jpayne@68: PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; jpayne@68: from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); jpayne@68: if (!from_bytes) return NULL; jpayne@68: py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(int64_t)); jpayne@68: if (!py_bytes) goto limited_bad; jpayne@68: order_str = PyUnicode_FromString(little ? "little" : "big"); jpayne@68: if (!order_str) goto limited_bad; jpayne@68: arg_tuple = PyTuple_Pack(2, py_bytes, order_str); jpayne@68: if (!arg_tuple) goto limited_bad; jpayne@68: if (!is_unsigned) { jpayne@68: kwds = PyDict_New(); jpayne@68: if (!kwds) goto limited_bad; jpayne@68: if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; jpayne@68: } jpayne@68: result = PyObject_Call(from_bytes, arg_tuple, kwds); jpayne@68: limited_bad: jpayne@68: Py_XDECREF(kwds); jpayne@68: Py_XDECREF(arg_tuple); jpayne@68: Py_XDECREF(order_str); jpayne@68: Py_XDECREF(py_bytes); jpayne@68: Py_XDECREF(from_bytes); jpayne@68: return result; jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* CIntFromPy */ jpayne@68: static CYTHON_INLINE int64_t __Pyx_PyInt_As_int64_t(PyObject *x) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const int64_t neg_one = (int64_t) -1, const_zero = (int64_t) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(PyInt_Check(x))) { jpayne@68: if ((sizeof(int64_t) < sizeof(long))) { jpayne@68: __PYX_VERIFY_RETURN_INT(int64_t, long, PyInt_AS_LONG(x)) jpayne@68: } else { jpayne@68: long val = PyInt_AS_LONG(x); jpayne@68: if (is_unsigned && unlikely(val < 0)) { jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: return (int64_t) val; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: if (unlikely(!PyLong_Check(x))) { jpayne@68: int64_t val; jpayne@68: PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); jpayne@68: if (!tmp) return (int64_t) -1; jpayne@68: val = __Pyx_PyInt_As_int64_t(tmp); jpayne@68: Py_DECREF(tmp); jpayne@68: return val; jpayne@68: } jpayne@68: if (is_unsigned) { jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (unlikely(__Pyx_PyLong_IsNeg(x))) { jpayne@68: goto raise_neg_overflow; jpayne@68: } else if (__Pyx_PyLong_IsCompact(x)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int64_t, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@68: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@68: switch (__Pyx_PyLong_DigitCount(x)) { jpayne@68: case 2: jpayne@68: if ((8 * sizeof(int64_t) > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int64_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int64_t) >= 2 * PyLong_SHIFT)) { jpayne@68: return (int64_t) (((((int64_t)digits[1]) << PyLong_SHIFT) | (int64_t)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 3: jpayne@68: if ((8 * sizeof(int64_t) > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int64_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int64_t) >= 3 * PyLong_SHIFT)) { jpayne@68: return (int64_t) (((((((int64_t)digits[2]) << PyLong_SHIFT) | (int64_t)digits[1]) << PyLong_SHIFT) | (int64_t)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 4: jpayne@68: if ((8 * sizeof(int64_t) > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int64_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int64_t) >= 4 * PyLong_SHIFT)) { jpayne@68: return (int64_t) (((((((((int64_t)digits[3]) << PyLong_SHIFT) | (int64_t)digits[2]) << PyLong_SHIFT) | (int64_t)digits[1]) << PyLong_SHIFT) | (int64_t)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 jpayne@68: if (unlikely(Py_SIZE(x) < 0)) { jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: #else jpayne@68: { jpayne@68: int result = PyObject_RichCompareBool(x, Py_False, Py_LT); jpayne@68: if (unlikely(result < 0)) jpayne@68: return (int64_t) -1; jpayne@68: if (unlikely(result == 1)) jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: #endif jpayne@68: if ((sizeof(int64_t) <= sizeof(unsigned long))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(int64_t, unsigned long, PyLong_AsUnsignedLong(x)) jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if ((sizeof(int64_t) <= sizeof(unsigned PY_LONG_LONG))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(int64_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (__Pyx_PyLong_IsCompact(x)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int64_t, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@68: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@68: switch (__Pyx_PyLong_SignedDigitCount(x)) { jpayne@68: case -2: jpayne@68: if ((8 * sizeof(int64_t) - 1 > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int64_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int64_t) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: return (int64_t) (((int64_t)-1)*(((((int64_t)digits[1]) << PyLong_SHIFT) | (int64_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 2: jpayne@68: if ((8 * sizeof(int64_t) > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int64_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int64_t) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: return (int64_t) ((((((int64_t)digits[1]) << PyLong_SHIFT) | (int64_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case -3: jpayne@68: if ((8 * sizeof(int64_t) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int64_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int64_t) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: return (int64_t) (((int64_t)-1)*(((((((int64_t)digits[2]) << PyLong_SHIFT) | (int64_t)digits[1]) << PyLong_SHIFT) | (int64_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 3: jpayne@68: if ((8 * sizeof(int64_t) > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int64_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int64_t) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: return (int64_t) ((((((((int64_t)digits[2]) << PyLong_SHIFT) | (int64_t)digits[1]) << PyLong_SHIFT) | (int64_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case -4: jpayne@68: if ((8 * sizeof(int64_t) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int64_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int64_t) - 1 > 4 * PyLong_SHIFT)) { jpayne@68: return (int64_t) (((int64_t)-1)*(((((((((int64_t)digits[3]) << PyLong_SHIFT) | (int64_t)digits[2]) << PyLong_SHIFT) | (int64_t)digits[1]) << PyLong_SHIFT) | (int64_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 4: jpayne@68: if ((8 * sizeof(int64_t) > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int64_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int64_t) - 1 > 4 * PyLong_SHIFT)) { jpayne@68: return (int64_t) ((((((((((int64_t)digits[3]) << PyLong_SHIFT) | (int64_t)digits[2]) << PyLong_SHIFT) | (int64_t)digits[1]) << PyLong_SHIFT) | (int64_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: if ((sizeof(int64_t) <= sizeof(long))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(int64_t, long, PyLong_AsLong(x)) jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if ((sizeof(int64_t) <= sizeof(PY_LONG_LONG))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(int64_t, PY_LONG_LONG, PyLong_AsLongLong(x)) jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: int64_t val; jpayne@68: int ret = -1; jpayne@68: #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: Py_ssize_t bytes_copied = PyLong_AsNativeBytes( jpayne@68: x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); jpayne@68: if (unlikely(bytes_copied == -1)) { jpayne@68: } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { jpayne@68: goto raise_overflow; jpayne@68: } else { jpayne@68: ret = 0; jpayne@68: } jpayne@68: #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) jpayne@68: int one = 1; int is_little = (int)*(unsigned char *)&one; jpayne@68: unsigned char *bytes = (unsigned char *)&val; jpayne@68: ret = _PyLong_AsByteArray((PyLongObject *)x, jpayne@68: bytes, sizeof(val), jpayne@68: is_little, !is_unsigned); jpayne@68: #else jpayne@68: PyObject *v; jpayne@68: PyObject *stepval = NULL, *mask = NULL, *shift = NULL; jpayne@68: int bits, remaining_bits, is_negative = 0; jpayne@68: int chunk_size = (sizeof(long) < 8) ? 30 : 62; jpayne@68: if (likely(PyLong_CheckExact(x))) { jpayne@68: v = __Pyx_NewRef(x); jpayne@68: } else { jpayne@68: v = PyNumber_Long(x); jpayne@68: if (unlikely(!v)) return (int64_t) -1; jpayne@68: assert(PyLong_CheckExact(v)); jpayne@68: } jpayne@68: { jpayne@68: int result = PyObject_RichCompareBool(v, Py_False, Py_LT); jpayne@68: if (unlikely(result < 0)) { jpayne@68: Py_DECREF(v); jpayne@68: return (int64_t) -1; jpayne@68: } jpayne@68: is_negative = result == 1; jpayne@68: } jpayne@68: if (is_unsigned && unlikely(is_negative)) { jpayne@68: Py_DECREF(v); jpayne@68: goto raise_neg_overflow; jpayne@68: } else if (is_negative) { jpayne@68: stepval = PyNumber_Invert(v); jpayne@68: Py_DECREF(v); jpayne@68: if (unlikely(!stepval)) jpayne@68: return (int64_t) -1; jpayne@68: } else { jpayne@68: stepval = v; jpayne@68: } jpayne@68: v = NULL; jpayne@68: val = (int64_t) 0; jpayne@68: mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; jpayne@68: shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; jpayne@68: for (bits = 0; bits < (int) sizeof(int64_t) * 8 - chunk_size; bits += chunk_size) { jpayne@68: PyObject *tmp, *digit; jpayne@68: long idigit; jpayne@68: digit = PyNumber_And(stepval, mask); jpayne@68: if (unlikely(!digit)) goto done; jpayne@68: idigit = PyLong_AsLong(digit); jpayne@68: Py_DECREF(digit); jpayne@68: if (unlikely(idigit < 0)) goto done; jpayne@68: val |= ((int64_t) idigit) << bits; jpayne@68: tmp = PyNumber_Rshift(stepval, shift); jpayne@68: if (unlikely(!tmp)) goto done; jpayne@68: Py_DECREF(stepval); stepval = tmp; jpayne@68: } jpayne@68: Py_DECREF(shift); shift = NULL; jpayne@68: Py_DECREF(mask); mask = NULL; jpayne@68: { jpayne@68: long idigit = PyLong_AsLong(stepval); jpayne@68: if (unlikely(idigit < 0)) goto done; jpayne@68: remaining_bits = ((int) sizeof(int64_t) * 8) - bits - (is_unsigned ? 0 : 1); jpayne@68: if (unlikely(idigit >= (1L << remaining_bits))) jpayne@68: goto raise_overflow; jpayne@68: val |= ((int64_t) idigit) << bits; jpayne@68: } jpayne@68: if (!is_unsigned) { jpayne@68: if (unlikely(val & (((int64_t) 1) << (sizeof(int64_t) * 8 - 1)))) jpayne@68: goto raise_overflow; jpayne@68: if (is_negative) jpayne@68: val = ~val; jpayne@68: } jpayne@68: ret = 0; jpayne@68: done: jpayne@68: Py_XDECREF(shift); jpayne@68: Py_XDECREF(mask); jpayne@68: Py_XDECREF(stepval); jpayne@68: #endif jpayne@68: if (unlikely(ret)) jpayne@68: return (int64_t) -1; jpayne@68: return val; jpayne@68: } jpayne@68: raise_overflow: jpayne@68: PyErr_SetString(PyExc_OverflowError, jpayne@68: "value too large to convert to int64_t"); jpayne@68: return (int64_t) -1; jpayne@68: raise_neg_overflow: jpayne@68: PyErr_SetString(PyExc_OverflowError, jpayne@68: "can't convert negative value to int64_t"); jpayne@68: return (int64_t) -1; jpayne@68: } jpayne@68: jpayne@68: /* CIntFromPy */ jpayne@68: static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const int neg_one = (int) -1, const_zero = (int) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(PyInt_Check(x))) { jpayne@68: if ((sizeof(int) < sizeof(long))) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x)) jpayne@68: } else { jpayne@68: long val = PyInt_AS_LONG(x); jpayne@68: if (is_unsigned && unlikely(val < 0)) { jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: return (int) val; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: if (unlikely(!PyLong_Check(x))) { jpayne@68: int val; jpayne@68: PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); jpayne@68: if (!tmp) return (int) -1; jpayne@68: val = __Pyx_PyInt_As_int(tmp); jpayne@68: Py_DECREF(tmp); jpayne@68: return val; jpayne@68: } jpayne@68: if (is_unsigned) { jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (unlikely(__Pyx_PyLong_IsNeg(x))) { jpayne@68: goto raise_neg_overflow; jpayne@68: } else if (__Pyx_PyLong_IsCompact(x)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@68: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@68: switch (__Pyx_PyLong_DigitCount(x)) { jpayne@68: case 2: jpayne@68: if ((8 * sizeof(int) > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int) >= 2 * PyLong_SHIFT)) { jpayne@68: return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 3: jpayne@68: if ((8 * sizeof(int) > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int) >= 3 * PyLong_SHIFT)) { jpayne@68: return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 4: jpayne@68: if ((8 * sizeof(int) > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int) >= 4 * PyLong_SHIFT)) { jpayne@68: return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 jpayne@68: if (unlikely(Py_SIZE(x) < 0)) { jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: #else jpayne@68: { jpayne@68: int result = PyObject_RichCompareBool(x, Py_False, Py_LT); jpayne@68: if (unlikely(result < 0)) jpayne@68: return (int) -1; jpayne@68: if (unlikely(result == 1)) jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: #endif jpayne@68: if ((sizeof(int) <= sizeof(unsigned long))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x)) jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if ((sizeof(int) <= sizeof(unsigned PY_LONG_LONG))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (__Pyx_PyLong_IsCompact(x)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@68: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@68: switch (__Pyx_PyLong_SignedDigitCount(x)) { jpayne@68: case -2: jpayne@68: if ((8 * sizeof(int) - 1 > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 2: jpayne@68: if ((8 * sizeof(int) > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case -3: jpayne@68: if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 3: jpayne@68: if ((8 * sizeof(int) > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case -4: jpayne@68: if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int) - 1 > 4 * PyLong_SHIFT)) { jpayne@68: return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 4: jpayne@68: if ((8 * sizeof(int) > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int) - 1 > 4 * PyLong_SHIFT)) { jpayne@68: return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: if ((sizeof(int) <= sizeof(long))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x)) jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if ((sizeof(int) <= sizeof(PY_LONG_LONG))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x)) jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: int val; jpayne@68: int ret = -1; jpayne@68: #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: Py_ssize_t bytes_copied = PyLong_AsNativeBytes( jpayne@68: x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); jpayne@68: if (unlikely(bytes_copied == -1)) { jpayne@68: } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { jpayne@68: goto raise_overflow; jpayne@68: } else { jpayne@68: ret = 0; jpayne@68: } jpayne@68: #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) jpayne@68: int one = 1; int is_little = (int)*(unsigned char *)&one; jpayne@68: unsigned char *bytes = (unsigned char *)&val; jpayne@68: ret = _PyLong_AsByteArray((PyLongObject *)x, jpayne@68: bytes, sizeof(val), jpayne@68: is_little, !is_unsigned); jpayne@68: #else jpayne@68: PyObject *v; jpayne@68: PyObject *stepval = NULL, *mask = NULL, *shift = NULL; jpayne@68: int bits, remaining_bits, is_negative = 0; jpayne@68: int chunk_size = (sizeof(long) < 8) ? 30 : 62; jpayne@68: if (likely(PyLong_CheckExact(x))) { jpayne@68: v = __Pyx_NewRef(x); jpayne@68: } else { jpayne@68: v = PyNumber_Long(x); jpayne@68: if (unlikely(!v)) return (int) -1; jpayne@68: assert(PyLong_CheckExact(v)); jpayne@68: } jpayne@68: { jpayne@68: int result = PyObject_RichCompareBool(v, Py_False, Py_LT); jpayne@68: if (unlikely(result < 0)) { jpayne@68: Py_DECREF(v); jpayne@68: return (int) -1; jpayne@68: } jpayne@68: is_negative = result == 1; jpayne@68: } jpayne@68: if (is_unsigned && unlikely(is_negative)) { jpayne@68: Py_DECREF(v); jpayne@68: goto raise_neg_overflow; jpayne@68: } else if (is_negative) { jpayne@68: stepval = PyNumber_Invert(v); jpayne@68: Py_DECREF(v); jpayne@68: if (unlikely(!stepval)) jpayne@68: return (int) -1; jpayne@68: } else { jpayne@68: stepval = v; jpayne@68: } jpayne@68: v = NULL; jpayne@68: val = (int) 0; jpayne@68: mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; jpayne@68: shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; jpayne@68: for (bits = 0; bits < (int) sizeof(int) * 8 - chunk_size; bits += chunk_size) { jpayne@68: PyObject *tmp, *digit; jpayne@68: long idigit; jpayne@68: digit = PyNumber_And(stepval, mask); jpayne@68: if (unlikely(!digit)) goto done; jpayne@68: idigit = PyLong_AsLong(digit); jpayne@68: Py_DECREF(digit); jpayne@68: if (unlikely(idigit < 0)) goto done; jpayne@68: val |= ((int) idigit) << bits; jpayne@68: tmp = PyNumber_Rshift(stepval, shift); jpayne@68: if (unlikely(!tmp)) goto done; jpayne@68: Py_DECREF(stepval); stepval = tmp; jpayne@68: } jpayne@68: Py_DECREF(shift); shift = NULL; jpayne@68: Py_DECREF(mask); mask = NULL; jpayne@68: { jpayne@68: long idigit = PyLong_AsLong(stepval); jpayne@68: if (unlikely(idigit < 0)) goto done; jpayne@68: remaining_bits = ((int) sizeof(int) * 8) - bits - (is_unsigned ? 0 : 1); jpayne@68: if (unlikely(idigit >= (1L << remaining_bits))) jpayne@68: goto raise_overflow; jpayne@68: val |= ((int) idigit) << bits; jpayne@68: } jpayne@68: if (!is_unsigned) { jpayne@68: if (unlikely(val & (((int) 1) << (sizeof(int) * 8 - 1)))) jpayne@68: goto raise_overflow; jpayne@68: if (is_negative) jpayne@68: val = ~val; jpayne@68: } jpayne@68: ret = 0; jpayne@68: done: jpayne@68: Py_XDECREF(shift); jpayne@68: Py_XDECREF(mask); jpayne@68: Py_XDECREF(stepval); jpayne@68: #endif jpayne@68: if (unlikely(ret)) jpayne@68: return (int) -1; jpayne@68: return val; jpayne@68: } jpayne@68: raise_overflow: jpayne@68: PyErr_SetString(PyExc_OverflowError, jpayne@68: "value too large to convert to int"); jpayne@68: return (int) -1; jpayne@68: raise_neg_overflow: jpayne@68: PyErr_SetString(PyExc_OverflowError, jpayne@68: "can't convert negative value to int"); jpayne@68: return (int) -1; jpayne@68: } jpayne@68: jpayne@68: /* FormatTypeName */ jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static __Pyx_TypeName jpayne@68: __Pyx_PyType_GetName(PyTypeObject* tp) jpayne@68: { jpayne@68: PyObject *name = __Pyx_PyObject_GetAttrStr((PyObject *)tp, jpayne@68: __pyx_n_s_name); jpayne@68: if (unlikely(name == NULL) || unlikely(!PyUnicode_Check(name))) { jpayne@68: PyErr_Clear(); jpayne@68: Py_XDECREF(name); jpayne@68: name = __Pyx_NewRef(__pyx_n_s__48); jpayne@68: } jpayne@68: return name; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* CIntToPy */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const long neg_one = (long) -1, const_zero = (long) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: if (is_unsigned) { jpayne@68: if (sizeof(long) < sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: } else if (sizeof(long) <= sizeof(unsigned long)) { jpayne@68: return PyLong_FromUnsignedLong((unsigned long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { jpayne@68: return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: if (sizeof(long) <= sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { jpayne@68: return PyLong_FromLongLong((PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: unsigned char *bytes = (unsigned char *)&value; jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 jpayne@68: if (is_unsigned) { jpayne@68: return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); jpayne@68: } else { jpayne@68: return PyLong_FromNativeBytes(bytes, sizeof(value), -1); jpayne@68: } jpayne@68: #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: return _PyLong_FromByteArray(bytes, sizeof(long), jpayne@68: little, !is_unsigned); jpayne@68: #else jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: PyObject *from_bytes, *result = NULL; jpayne@68: PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; jpayne@68: from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); jpayne@68: if (!from_bytes) return NULL; jpayne@68: py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(long)); jpayne@68: if (!py_bytes) goto limited_bad; jpayne@68: order_str = PyUnicode_FromString(little ? "little" : "big"); jpayne@68: if (!order_str) goto limited_bad; jpayne@68: arg_tuple = PyTuple_Pack(2, py_bytes, order_str); jpayne@68: if (!arg_tuple) goto limited_bad; jpayne@68: if (!is_unsigned) { jpayne@68: kwds = PyDict_New(); jpayne@68: if (!kwds) goto limited_bad; jpayne@68: if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; jpayne@68: } jpayne@68: result = PyObject_Call(from_bytes, arg_tuple, kwds); jpayne@68: limited_bad: jpayne@68: Py_XDECREF(kwds); jpayne@68: Py_XDECREF(arg_tuple); jpayne@68: Py_XDECREF(order_str); jpayne@68: Py_XDECREF(py_bytes); jpayne@68: Py_XDECREF(from_bytes); jpayne@68: return result; jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* CIntFromPy */ jpayne@68: static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const long neg_one = (long) -1, const_zero = (long) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(PyInt_Check(x))) { jpayne@68: if ((sizeof(long) < sizeof(long))) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x)) jpayne@68: } else { jpayne@68: long val = PyInt_AS_LONG(x); jpayne@68: if (is_unsigned && unlikely(val < 0)) { jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: return (long) val; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: if (unlikely(!PyLong_Check(x))) { jpayne@68: long val; jpayne@68: PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); jpayne@68: if (!tmp) return (long) -1; jpayne@68: val = __Pyx_PyInt_As_long(tmp); jpayne@68: Py_DECREF(tmp); jpayne@68: return val; jpayne@68: } jpayne@68: if (is_unsigned) { jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (unlikely(__Pyx_PyLong_IsNeg(x))) { jpayne@68: goto raise_neg_overflow; jpayne@68: } else if (__Pyx_PyLong_IsCompact(x)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@68: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@68: switch (__Pyx_PyLong_DigitCount(x)) { jpayne@68: case 2: jpayne@68: if ((8 * sizeof(long) > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(long) >= 2 * PyLong_SHIFT)) { jpayne@68: return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 3: jpayne@68: if ((8 * sizeof(long) > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(long) >= 3 * PyLong_SHIFT)) { jpayne@68: return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 4: jpayne@68: if ((8 * sizeof(long) > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(long) >= 4 * PyLong_SHIFT)) { jpayne@68: return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 jpayne@68: if (unlikely(Py_SIZE(x) < 0)) { jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: #else jpayne@68: { jpayne@68: int result = PyObject_RichCompareBool(x, Py_False, Py_LT); jpayne@68: if (unlikely(result < 0)) jpayne@68: return (long) -1; jpayne@68: if (unlikely(result == 1)) jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: #endif jpayne@68: if ((sizeof(long) <= sizeof(unsigned long))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x)) jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if ((sizeof(long) <= sizeof(unsigned PY_LONG_LONG))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (__Pyx_PyLong_IsCompact(x)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@68: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@68: switch (__Pyx_PyLong_SignedDigitCount(x)) { jpayne@68: case -2: jpayne@68: if ((8 * sizeof(long) - 1 > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 2: jpayne@68: if ((8 * sizeof(long) > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case -3: jpayne@68: if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 3: jpayne@68: if ((8 * sizeof(long) > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case -4: jpayne@68: if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(long) - 1 > 4 * PyLong_SHIFT)) { jpayne@68: return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 4: jpayne@68: if ((8 * sizeof(long) > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(long) - 1 > 4 * PyLong_SHIFT)) { jpayne@68: return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: if ((sizeof(long) <= sizeof(long))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x)) jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if ((sizeof(long) <= sizeof(PY_LONG_LONG))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x)) jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: long val; jpayne@68: int ret = -1; jpayne@68: #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: Py_ssize_t bytes_copied = PyLong_AsNativeBytes( jpayne@68: x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); jpayne@68: if (unlikely(bytes_copied == -1)) { jpayne@68: } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { jpayne@68: goto raise_overflow; jpayne@68: } else { jpayne@68: ret = 0; jpayne@68: } jpayne@68: #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) jpayne@68: int one = 1; int is_little = (int)*(unsigned char *)&one; jpayne@68: unsigned char *bytes = (unsigned char *)&val; jpayne@68: ret = _PyLong_AsByteArray((PyLongObject *)x, jpayne@68: bytes, sizeof(val), jpayne@68: is_little, !is_unsigned); jpayne@68: #else jpayne@68: PyObject *v; jpayne@68: PyObject *stepval = NULL, *mask = NULL, *shift = NULL; jpayne@68: int bits, remaining_bits, is_negative = 0; jpayne@68: int chunk_size = (sizeof(long) < 8) ? 30 : 62; jpayne@68: if (likely(PyLong_CheckExact(x))) { jpayne@68: v = __Pyx_NewRef(x); jpayne@68: } else { jpayne@68: v = PyNumber_Long(x); jpayne@68: if (unlikely(!v)) return (long) -1; jpayne@68: assert(PyLong_CheckExact(v)); jpayne@68: } jpayne@68: { jpayne@68: int result = PyObject_RichCompareBool(v, Py_False, Py_LT); jpayne@68: if (unlikely(result < 0)) { jpayne@68: Py_DECREF(v); jpayne@68: return (long) -1; jpayne@68: } jpayne@68: is_negative = result == 1; jpayne@68: } jpayne@68: if (is_unsigned && unlikely(is_negative)) { jpayne@68: Py_DECREF(v); jpayne@68: goto raise_neg_overflow; jpayne@68: } else if (is_negative) { jpayne@68: stepval = PyNumber_Invert(v); jpayne@68: Py_DECREF(v); jpayne@68: if (unlikely(!stepval)) jpayne@68: return (long) -1; jpayne@68: } else { jpayne@68: stepval = v; jpayne@68: } jpayne@68: v = NULL; jpayne@68: val = (long) 0; jpayne@68: mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; jpayne@68: shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; jpayne@68: for (bits = 0; bits < (int) sizeof(long) * 8 - chunk_size; bits += chunk_size) { jpayne@68: PyObject *tmp, *digit; jpayne@68: long idigit; jpayne@68: digit = PyNumber_And(stepval, mask); jpayne@68: if (unlikely(!digit)) goto done; jpayne@68: idigit = PyLong_AsLong(digit); jpayne@68: Py_DECREF(digit); jpayne@68: if (unlikely(idigit < 0)) goto done; jpayne@68: val |= ((long) idigit) << bits; jpayne@68: tmp = PyNumber_Rshift(stepval, shift); jpayne@68: if (unlikely(!tmp)) goto done; jpayne@68: Py_DECREF(stepval); stepval = tmp; jpayne@68: } jpayne@68: Py_DECREF(shift); shift = NULL; jpayne@68: Py_DECREF(mask); mask = NULL; jpayne@68: { jpayne@68: long idigit = PyLong_AsLong(stepval); jpayne@68: if (unlikely(idigit < 0)) goto done; jpayne@68: remaining_bits = ((int) sizeof(long) * 8) - bits - (is_unsigned ? 0 : 1); jpayne@68: if (unlikely(idigit >= (1L << remaining_bits))) jpayne@68: goto raise_overflow; jpayne@68: val |= ((long) idigit) << bits; jpayne@68: } jpayne@68: if (!is_unsigned) { jpayne@68: if (unlikely(val & (((long) 1) << (sizeof(long) * 8 - 1)))) jpayne@68: goto raise_overflow; jpayne@68: if (is_negative) jpayne@68: val = ~val; jpayne@68: } jpayne@68: ret = 0; jpayne@68: done: jpayne@68: Py_XDECREF(shift); jpayne@68: Py_XDECREF(mask); jpayne@68: Py_XDECREF(stepval); jpayne@68: #endif jpayne@68: if (unlikely(ret)) jpayne@68: return (long) -1; jpayne@68: return val; jpayne@68: } jpayne@68: raise_overflow: jpayne@68: PyErr_SetString(PyExc_OverflowError, jpayne@68: "value too large to convert to long"); jpayne@68: return (long) -1; jpayne@68: raise_neg_overflow: jpayne@68: PyErr_SetString(PyExc_OverflowError, jpayne@68: "can't convert negative value to long"); jpayne@68: return (long) -1; jpayne@68: } jpayne@68: jpayne@68: /* FastTypeChecks */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: static int __Pyx_InBases(PyTypeObject *a, PyTypeObject *b) { jpayne@68: while (a) { jpayne@68: a = __Pyx_PyType_GetSlot(a, tp_base, PyTypeObject*); jpayne@68: if (a == b) jpayne@68: return 1; jpayne@68: } jpayne@68: return b == &PyBaseObject_Type; jpayne@68: } jpayne@68: static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b) { jpayne@68: PyObject *mro; jpayne@68: if (a == b) return 1; jpayne@68: mro = a->tp_mro; jpayne@68: if (likely(mro)) { jpayne@68: Py_ssize_t i, n; jpayne@68: n = PyTuple_GET_SIZE(mro); jpayne@68: for (i = 0; i < n; i++) { jpayne@68: if (PyTuple_GET_ITEM(mro, i) == (PyObject *)b) jpayne@68: return 1; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: return __Pyx_InBases(a, b); jpayne@68: } jpayne@68: static CYTHON_INLINE int __Pyx_IsAnySubtype2(PyTypeObject *cls, PyTypeObject *a, PyTypeObject *b) { jpayne@68: PyObject *mro; jpayne@68: if (cls == a || cls == b) return 1; jpayne@68: mro = cls->tp_mro; jpayne@68: if (likely(mro)) { jpayne@68: Py_ssize_t i, n; jpayne@68: n = PyTuple_GET_SIZE(mro); jpayne@68: for (i = 0; i < n; i++) { jpayne@68: PyObject *base = PyTuple_GET_ITEM(mro, i); jpayne@68: if (base == (PyObject *)a || base == (PyObject *)b) jpayne@68: return 1; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: return __Pyx_InBases(cls, a) || __Pyx_InBases(cls, b); jpayne@68: } jpayne@68: #if PY_MAJOR_VERSION == 2 jpayne@68: static int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject* exc_type2) { jpayne@68: PyObject *exception, *value, *tb; jpayne@68: int res; jpayne@68: __Pyx_PyThreadState_declare jpayne@68: __Pyx_PyThreadState_assign jpayne@68: __Pyx_ErrFetch(&exception, &value, &tb); jpayne@68: res = exc_type1 ? PyObject_IsSubclass(err, exc_type1) : 0; jpayne@68: if (unlikely(res == -1)) { jpayne@68: PyErr_WriteUnraisable(err); jpayne@68: res = 0; jpayne@68: } jpayne@68: if (!res) { jpayne@68: res = PyObject_IsSubclass(err, exc_type2); jpayne@68: if (unlikely(res == -1)) { jpayne@68: PyErr_WriteUnraisable(err); jpayne@68: res = 0; jpayne@68: } jpayne@68: } jpayne@68: __Pyx_ErrRestore(exception, value, tb); jpayne@68: return res; jpayne@68: } jpayne@68: #else jpayne@68: static CYTHON_INLINE int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject *exc_type2) { jpayne@68: if (exc_type1) { jpayne@68: return __Pyx_IsAnySubtype2((PyTypeObject*)err, (PyTypeObject*)exc_type1, (PyTypeObject*)exc_type2); jpayne@68: } else { jpayne@68: return __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type2); jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: static int __Pyx_PyErr_GivenExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) { jpayne@68: Py_ssize_t i, n; jpayne@68: assert(PyExceptionClass_Check(exc_type)); jpayne@68: n = PyTuple_GET_SIZE(tuple); jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: for (i=0; i= 0x030B00A4 jpayne@68: return Py_Version & ~0xFFUL; jpayne@68: #else jpayne@68: const char* rt_version = Py_GetVersion(); jpayne@68: unsigned long version = 0; jpayne@68: unsigned long factor = 0x01000000UL; jpayne@68: unsigned int digit = 0; jpayne@68: int i = 0; jpayne@68: while (factor) { jpayne@68: while ('0' <= rt_version[i] && rt_version[i] <= '9') { jpayne@68: digit = digit * 10 + (unsigned int) (rt_version[i] - '0'); jpayne@68: ++i; jpayne@68: } jpayne@68: version += factor * digit; jpayne@68: if (rt_version[i] != '.') jpayne@68: break; jpayne@68: digit = 0; jpayne@68: factor >>= 8; jpayne@68: ++i; jpayne@68: } jpayne@68: return version; jpayne@68: #endif jpayne@68: } jpayne@68: static int __Pyx_check_binary_version(unsigned long ct_version, unsigned long rt_version, int allow_newer) { jpayne@68: const unsigned long MAJOR_MINOR = 0xFFFF0000UL; jpayne@68: if ((rt_version & MAJOR_MINOR) == (ct_version & MAJOR_MINOR)) jpayne@68: return 0; jpayne@68: if (likely(allow_newer && (rt_version & MAJOR_MINOR) > (ct_version & MAJOR_MINOR))) jpayne@68: return 1; jpayne@68: { jpayne@68: char message[200]; jpayne@68: PyOS_snprintf(message, sizeof(message), jpayne@68: "compile time Python version %d.%d " jpayne@68: "of module '%.100s' " jpayne@68: "%s " jpayne@68: "runtime version %d.%d", jpayne@68: (int) (ct_version >> 24), (int) ((ct_version >> 16) & 0xFF), jpayne@68: __Pyx_MODULE_NAME, jpayne@68: (allow_newer) ? "was newer than" : "does not match", jpayne@68: (int) (rt_version >> 24), (int) ((rt_version >> 16) & 0xFF) jpayne@68: ); jpayne@68: return PyErr_WarnEx(NULL, message, 1); jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* FunctionImport */ jpayne@68: #ifndef __PYX_HAVE_RT_ImportFunction_3_0_11 jpayne@68: #define __PYX_HAVE_RT_ImportFunction_3_0_11 jpayne@68: static int __Pyx_ImportFunction_3_0_11(PyObject *module, const char *funcname, void (**f)(void), const char *sig) { jpayne@68: PyObject *d = 0; jpayne@68: PyObject *cobj = 0; jpayne@68: union { jpayne@68: void (*fp)(void); jpayne@68: void *p; jpayne@68: } tmp; jpayne@68: d = PyObject_GetAttrString(module, (char *)"__pyx_capi__"); jpayne@68: if (!d) jpayne@68: goto bad; jpayne@68: cobj = PyDict_GetItemString(d, funcname); jpayne@68: if (!cobj) { jpayne@68: PyErr_Format(PyExc_ImportError, jpayne@68: "%.200s does not export expected C function %.200s", jpayne@68: PyModule_GetName(module), funcname); jpayne@68: goto bad; jpayne@68: } jpayne@68: if (!PyCapsule_IsValid(cobj, sig)) { jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "C function %.200s.%.200s has wrong signature (expected %.500s, got %.500s)", jpayne@68: PyModule_GetName(module), funcname, sig, PyCapsule_GetName(cobj)); jpayne@68: goto bad; jpayne@68: } jpayne@68: tmp.p = PyCapsule_GetPointer(cobj, sig); jpayne@68: *f = tmp.fp; jpayne@68: if (!(*f)) jpayne@68: goto bad; jpayne@68: Py_DECREF(d); jpayne@68: return 0; jpayne@68: bad: jpayne@68: Py_XDECREF(d); jpayne@68: return -1; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* InitStrings */ jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: static int __Pyx_InitString(__Pyx_StringTabEntry t, PyObject **str) { jpayne@68: if (t.is_unicode | t.is_str) { jpayne@68: if (t.intern) { jpayne@68: *str = PyUnicode_InternFromString(t.s); jpayne@68: } else if (t.encoding) { jpayne@68: *str = PyUnicode_Decode(t.s, t.n - 1, t.encoding, NULL); jpayne@68: } else { jpayne@68: *str = PyUnicode_FromStringAndSize(t.s, t.n - 1); jpayne@68: } jpayne@68: } else { jpayne@68: *str = PyBytes_FromStringAndSize(t.s, t.n - 1); jpayne@68: } jpayne@68: if (!*str) jpayne@68: return -1; jpayne@68: if (PyObject_Hash(*str) == -1) jpayne@68: return -1; jpayne@68: return 0; jpayne@68: } jpayne@68: #endif jpayne@68: static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { jpayne@68: while (t->p) { jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: __Pyx_InitString(*t, t->p); jpayne@68: #else jpayne@68: if (t->is_unicode) { jpayne@68: *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); jpayne@68: } else if (t->intern) { jpayne@68: *t->p = PyString_InternFromString(t->s); jpayne@68: } else { jpayne@68: *t->p = PyString_FromStringAndSize(t->s, t->n - 1); jpayne@68: } jpayne@68: if (!*t->p) jpayne@68: return -1; jpayne@68: if (PyObject_Hash(*t->p) == -1) jpayne@68: return -1; jpayne@68: #endif jpayne@68: ++t; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: jpayne@68: #include jpayne@68: static CYTHON_INLINE Py_ssize_t __Pyx_ssize_strlen(const char *s) { jpayne@68: size_t len = strlen(s); jpayne@68: if (unlikely(len > (size_t) PY_SSIZE_T_MAX)) { jpayne@68: PyErr_SetString(PyExc_OverflowError, "byte string is too long"); jpayne@68: return -1; jpayne@68: } jpayne@68: return (Py_ssize_t) len; jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { jpayne@68: Py_ssize_t len = __Pyx_ssize_strlen(c_str); jpayne@68: if (unlikely(len < 0)) return NULL; jpayne@68: return __Pyx_PyUnicode_FromStringAndSize(c_str, len); jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyByteArray_FromString(const char* c_str) { jpayne@68: Py_ssize_t len = __Pyx_ssize_strlen(c_str); jpayne@68: if (unlikely(len < 0)) return NULL; jpayne@68: return PyByteArray_FromStringAndSize(c_str, len); jpayne@68: } jpayne@68: static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) { jpayne@68: Py_ssize_t ignore; jpayne@68: return __Pyx_PyObject_AsStringAndSize(o, &ignore); jpayne@68: } jpayne@68: #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT jpayne@68: #if !CYTHON_PEP393_ENABLED jpayne@68: static const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) { jpayne@68: char* defenc_c; jpayne@68: PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); jpayne@68: if (!defenc) return NULL; jpayne@68: defenc_c = PyBytes_AS_STRING(defenc); jpayne@68: #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII jpayne@68: { jpayne@68: char* end = defenc_c + PyBytes_GET_SIZE(defenc); jpayne@68: char* c; jpayne@68: for (c = defenc_c; c < end; c++) { jpayne@68: if ((unsigned char) (*c) >= 128) { jpayne@68: PyUnicode_AsASCIIString(o); jpayne@68: return NULL; jpayne@68: } jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: *length = PyBytes_GET_SIZE(defenc); jpayne@68: return defenc_c; jpayne@68: } jpayne@68: #else jpayne@68: static CYTHON_INLINE const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) { jpayne@68: if (unlikely(__Pyx_PyUnicode_READY(o) == -1)) return NULL; jpayne@68: #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII jpayne@68: if (likely(PyUnicode_IS_ASCII(o))) { jpayne@68: *length = PyUnicode_GET_LENGTH(o); jpayne@68: return PyUnicode_AsUTF8(o); jpayne@68: } else { jpayne@68: PyUnicode_AsASCIIString(o); jpayne@68: return NULL; jpayne@68: } jpayne@68: #else jpayne@68: return PyUnicode_AsUTF8AndSize(o, length); jpayne@68: #endif jpayne@68: } jpayne@68: #endif jpayne@68: #endif jpayne@68: static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { jpayne@68: #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT jpayne@68: if ( jpayne@68: #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII jpayne@68: __Pyx_sys_getdefaultencoding_not_ascii && jpayne@68: #endif jpayne@68: PyUnicode_Check(o)) { jpayne@68: return __Pyx_PyUnicode_AsStringAndSize(o, length); jpayne@68: } else jpayne@68: #endif jpayne@68: #if (!CYTHON_COMPILING_IN_PYPY && !CYTHON_COMPILING_IN_LIMITED_API) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE)) jpayne@68: if (PyByteArray_Check(o)) { jpayne@68: *length = PyByteArray_GET_SIZE(o); jpayne@68: return PyByteArray_AS_STRING(o); jpayne@68: } else jpayne@68: #endif jpayne@68: { jpayne@68: char* result; jpayne@68: int r = PyBytes_AsStringAndSize(o, &result, length); jpayne@68: if (unlikely(r < 0)) { jpayne@68: return NULL; jpayne@68: } else { jpayne@68: return result; jpayne@68: } jpayne@68: } jpayne@68: } jpayne@68: static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { jpayne@68: int is_true = x == Py_True; jpayne@68: if (is_true | (x == Py_False) | (x == Py_None)) return is_true; jpayne@68: else return PyObject_IsTrue(x); jpayne@68: } jpayne@68: static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject* x) { jpayne@68: int retval; jpayne@68: if (unlikely(!x)) return -1; jpayne@68: retval = __Pyx_PyObject_IsTrue(x); jpayne@68: Py_DECREF(x); jpayne@68: return retval; jpayne@68: } jpayne@68: static PyObject* __Pyx_PyNumber_IntOrLongWrongResultType(PyObject* result, const char* type_name) { jpayne@68: __Pyx_TypeName result_type_name = __Pyx_PyType_GetName(Py_TYPE(result)); jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: if (PyLong_Check(result)) { jpayne@68: if (PyErr_WarnFormat(PyExc_DeprecationWarning, 1, jpayne@68: "__int__ returned non-int (type " __Pyx_FMT_TYPENAME "). " jpayne@68: "The ability to return an instance of a strict subclass of int is deprecated, " jpayne@68: "and may be removed in a future version of Python.", jpayne@68: result_type_name)) { jpayne@68: __Pyx_DECREF_TypeName(result_type_name); jpayne@68: Py_DECREF(result); jpayne@68: return NULL; jpayne@68: } jpayne@68: __Pyx_DECREF_TypeName(result_type_name); jpayne@68: return result; jpayne@68: } jpayne@68: #endif jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "__%.4s__ returned non-%.4s (type " __Pyx_FMT_TYPENAME ")", jpayne@68: type_name, type_name, result_type_name); jpayne@68: __Pyx_DECREF_TypeName(result_type_name); jpayne@68: Py_DECREF(result); jpayne@68: return NULL; jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) { jpayne@68: #if CYTHON_USE_TYPE_SLOTS jpayne@68: PyNumberMethods *m; jpayne@68: #endif jpayne@68: const char *name = NULL; jpayne@68: PyObject *res = NULL; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(PyInt_Check(x) || PyLong_Check(x))) jpayne@68: #else jpayne@68: if (likely(PyLong_Check(x))) jpayne@68: #endif jpayne@68: return __Pyx_NewRef(x); jpayne@68: #if CYTHON_USE_TYPE_SLOTS jpayne@68: m = Py_TYPE(x)->tp_as_number; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (m && m->nb_int) { jpayne@68: name = "int"; jpayne@68: res = m->nb_int(x); jpayne@68: } jpayne@68: else if (m && m->nb_long) { jpayne@68: name = "long"; jpayne@68: res = m->nb_long(x); jpayne@68: } jpayne@68: #else jpayne@68: if (likely(m && m->nb_int)) { jpayne@68: name = "int"; jpayne@68: res = m->nb_int(x); jpayne@68: } jpayne@68: #endif jpayne@68: #else jpayne@68: if (!PyBytes_CheckExact(x) && !PyUnicode_CheckExact(x)) { jpayne@68: res = PyNumber_Int(x); jpayne@68: } jpayne@68: #endif jpayne@68: if (likely(res)) { jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (unlikely(!PyInt_Check(res) && !PyLong_Check(res))) { jpayne@68: #else jpayne@68: if (unlikely(!PyLong_CheckExact(res))) { jpayne@68: #endif jpayne@68: return __Pyx_PyNumber_IntOrLongWrongResultType(res, name); jpayne@68: } jpayne@68: } jpayne@68: else if (!PyErr_Occurred()) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "an integer is required"); jpayne@68: } jpayne@68: return res; jpayne@68: } jpayne@68: static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { jpayne@68: Py_ssize_t ival; jpayne@68: PyObject *x; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(PyInt_CheckExact(b))) { jpayne@68: if (sizeof(Py_ssize_t) >= sizeof(long)) jpayne@68: return PyInt_AS_LONG(b); jpayne@68: else jpayne@68: return PyInt_AsSsize_t(b); jpayne@68: } jpayne@68: #endif jpayne@68: if (likely(PyLong_CheckExact(b))) { jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (likely(__Pyx_PyLong_IsCompact(b))) { jpayne@68: return __Pyx_PyLong_CompactValue(b); jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(b); jpayne@68: const Py_ssize_t size = __Pyx_PyLong_SignedDigitCount(b); jpayne@68: switch (size) { jpayne@68: case 2: jpayne@68: if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { jpayne@68: return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@68: } jpayne@68: break; jpayne@68: case -2: jpayne@68: if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { jpayne@68: return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@68: } jpayne@68: break; jpayne@68: case 3: jpayne@68: if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { jpayne@68: return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@68: } jpayne@68: break; jpayne@68: case -3: jpayne@68: if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { jpayne@68: return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@68: } jpayne@68: break; jpayne@68: case 4: jpayne@68: if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { jpayne@68: return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@68: } jpayne@68: break; jpayne@68: case -4: jpayne@68: if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { jpayne@68: return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@68: } jpayne@68: break; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: return PyLong_AsSsize_t(b); jpayne@68: } jpayne@68: x = PyNumber_Index(b); jpayne@68: if (!x) return -1; jpayne@68: ival = PyInt_AsSsize_t(x); jpayne@68: Py_DECREF(x); jpayne@68: return ival; jpayne@68: } jpayne@68: static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject* o) { jpayne@68: if (sizeof(Py_hash_t) == sizeof(Py_ssize_t)) { jpayne@68: return (Py_hash_t) __Pyx_PyIndex_AsSsize_t(o); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: } else if (likely(PyInt_CheckExact(o))) { jpayne@68: return PyInt_AS_LONG(o); jpayne@68: #endif jpayne@68: } else { jpayne@68: Py_ssize_t ival; jpayne@68: PyObject *x; jpayne@68: x = PyNumber_Index(o); jpayne@68: if (!x) return -1; jpayne@68: ival = PyInt_AsLong(x); jpayne@68: Py_DECREF(x); jpayne@68: return ival; jpayne@68: } jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b) { jpayne@68: return b ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False); jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { jpayne@68: return PyInt_FromSize_t(ival); jpayne@68: } jpayne@68: jpayne@68: jpayne@68: /* #### Code section: utility_code_pragmas_end ### */ jpayne@68: #ifdef _MSC_VER jpayne@68: #pragma warning( pop ) jpayne@68: #endif jpayne@68: jpayne@68: jpayne@68: jpayne@68: /* #### Code section: end ### */ jpayne@68: #endif /* Py_PYTHON_H */