jpayne@68: /* Generated by Cython 3.0.11 */ jpayne@68: jpayne@68: /* BEGIN: Cython Metadata jpayne@68: { jpayne@68: "distutils": { jpayne@68: "define_macros": [ jpayne@68: [ jpayne@68: "BUILDING_WHEEL", jpayne@68: null jpayne@68: ] jpayne@68: ], jpayne@68: "depends": [ jpayne@68: "/project/htslib/htslib/bgzf.h", jpayne@68: "/project/htslib/htslib/cram.h", jpayne@68: "/project/htslib/htslib/faidx.h", jpayne@68: "/project/htslib/htslib/hfile.h", jpayne@68: "/project/htslib/htslib/hts.h", jpayne@68: "/project/htslib/htslib/kstring.h", jpayne@68: "/project/htslib/htslib/sam.h", jpayne@68: "/project/htslib/htslib/tbx.h", jpayne@68: "/project/htslib/htslib/vcf.h", jpayne@68: "/project/htslib/htslib/vcfutils.h", jpayne@68: "/project/pysam/htslib_util.h" jpayne@68: ], jpayne@68: "extra_compile_args": [ jpayne@68: "-Wno-unused", jpayne@68: "-Wno-strict-prototypes", jpayne@68: "-Wno-sign-compare", jpayne@68: "-Wno-error=declaration-after-statement" jpayne@68: ], jpayne@68: "extra_link_args": [ jpayne@68: "-Wl,-rpath,$ORIGIN" jpayne@68: ], jpayne@68: "extra_objects": [ jpayne@68: "htslib/kfunc.o", jpayne@68: "htslib/kstring.o", jpayne@68: "htslib/bcf_sr_sort.o", jpayne@68: "htslib/bgzf.o", jpayne@68: "htslib/errmod.o", jpayne@68: "htslib/faidx.o", jpayne@68: "htslib/header.o", jpayne@68: "htslib/hfile.o", jpayne@68: "htslib/hts.o", jpayne@68: "htslib/hts_expr.o", jpayne@68: "htslib/hts_os.o", jpayne@68: "htslib/md5.o", jpayne@68: "htslib/multipart.o", jpayne@68: "htslib/probaln.o", jpayne@68: "htslib/realn.o", jpayne@68: "htslib/regidx.o", jpayne@68: "htslib/region.o", jpayne@68: "htslib/sam.o", jpayne@68: "htslib/sam_mods.o", jpayne@68: "htslib/simd.o", jpayne@68: "htslib/synced_bcf_reader.o", jpayne@68: "htslib/vcf_sweep.o", jpayne@68: "htslib/tbx.o", jpayne@68: "htslib/textutils.o", jpayne@68: "htslib/thread_pool.o", jpayne@68: "htslib/vcf.o", jpayne@68: "htslib/vcfutils.o", jpayne@68: "htslib/cram/cram_codecs.o", jpayne@68: "htslib/cram/cram_decode.o", jpayne@68: "htslib/cram/cram_encode.o", jpayne@68: "htslib/cram/cram_external.o", jpayne@68: "htslib/cram/cram_index.o", jpayne@68: "htslib/cram/cram_io.o", jpayne@68: "htslib/cram/cram_stats.o", jpayne@68: "htslib/cram/mFILE.o", jpayne@68: "htslib/cram/open_trace_file.o", jpayne@68: "htslib/cram/pooled_alloc.o", jpayne@68: "htslib/cram/string_alloc.o", jpayne@68: "htslib/htscodecs/htscodecs/arith_dynamic.o", jpayne@68: "htslib/htscodecs/htscodecs/fqzcomp_qual.o", jpayne@68: "htslib/htscodecs/htscodecs/htscodecs.o", jpayne@68: "htslib/htscodecs/htscodecs/pack.o", jpayne@68: "htslib/htscodecs/htscodecs/rANS_static4x16pr.o", jpayne@68: "htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.o", jpayne@68: "htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.o", jpayne@68: "htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.o", jpayne@68: "htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.o", jpayne@68: "htslib/htscodecs/htscodecs/rANS_static32x16pr.o", jpayne@68: "htslib/htscodecs/htscodecs/rANS_static.o", jpayne@68: "htslib/htscodecs/htscodecs/rle.o", jpayne@68: "htslib/htscodecs/htscodecs/tokenise_name3.o", jpayne@68: "htslib/htscodecs/htscodecs/utils.o", jpayne@68: "htslib/hfile_libcurl.o", jpayne@68: "htslib/hfile_gcs.o", jpayne@68: "htslib/hfile_s3.o", jpayne@68: "htslib/hfile_s3_write.o" jpayne@68: ], jpayne@68: "include_dirs": [ jpayne@68: "pysam", jpayne@68: "/project/pysam", jpayne@68: "/project/htslib", jpayne@68: "/project/samtools", jpayne@68: "/project/samtools/lz4", jpayne@68: "/project/bcftools", jpayne@68: "/project" jpayne@68: ], jpayne@68: "language": "c", jpayne@68: "libraries": [ jpayne@68: "z", jpayne@68: "lzma", jpayne@68: "bz2", jpayne@68: "z", jpayne@68: "m", jpayne@68: "curl", jpayne@68: "crypto" jpayne@68: ], jpayne@68: "library_dirs": [ jpayne@68: "/project/pysam", jpayne@68: "/project", jpayne@68: "build/lib.linux-x86_64-cpython-37/pysam" jpayne@68: ], jpayne@68: "name": "pysam.libchtslib", jpayne@68: "sources": [ jpayne@68: "pysam/libchtslib.pyx", jpayne@68: "pysam/htslib_util.c" jpayne@68: ] jpayne@68: }, jpayne@68: "module_name": "pysam.libchtslib" jpayne@68: } jpayne@68: END: Cython Metadata */ jpayne@68: jpayne@68: #ifndef PY_SSIZE_T_CLEAN jpayne@68: #define PY_SSIZE_T_CLEAN jpayne@68: #endif /* PY_SSIZE_T_CLEAN */ jpayne@68: #if defined(CYTHON_LIMITED_API) && 0 jpayne@68: #ifndef Py_LIMITED_API jpayne@68: #if CYTHON_LIMITED_API+0 > 0x03030000 jpayne@68: #define Py_LIMITED_API CYTHON_LIMITED_API jpayne@68: #else jpayne@68: #define Py_LIMITED_API 0x03030000 jpayne@68: #endif jpayne@68: #endif jpayne@68: #endif jpayne@68: jpayne@68: #include "Python.h" jpayne@68: jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: #define __Pyx_PyFloat_FromString(obj) PyFloat_FromString(obj) jpayne@68: #else jpayne@68: #define __Pyx_PyFloat_FromString(obj) PyFloat_FromString(obj, NULL) jpayne@68: #endif jpayne@68: jpayne@68: jpayne@68: #if PY_MAJOR_VERSION <= 2 jpayne@68: #define PyDict_GetItemWithError _PyDict_GetItemWithError jpayne@68: #endif jpayne@68: jpayne@68: jpayne@68: #if (PY_VERSION_HEX < 0x030700b1 || (CYTHON_COMPILING_IN_PYPY && PYPY_VERSION_NUM < 0x07030600)) && !defined(PyContextVar_Get) jpayne@68: #define PyContextVar_Get(var, d, v) ((d) ? ((void)(var), Py_INCREF(d), (v)[0] = (d), 0) : ((v)[0] = NULL, 0) ) jpayne@68: #endif jpayne@68: jpayne@68: #ifndef Py_PYTHON_H jpayne@68: #error Python headers needed to compile C extensions, please install development version of Python. jpayne@68: #elif PY_VERSION_HEX < 0x02070000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000) jpayne@68: #error Cython requires Python 2.7+ or Python 3.3+. jpayne@68: #else jpayne@68: #if defined(CYTHON_LIMITED_API) && CYTHON_LIMITED_API jpayne@68: #define __PYX_EXTRA_ABI_MODULE_NAME "limited" jpayne@68: #else jpayne@68: #define __PYX_EXTRA_ABI_MODULE_NAME "" jpayne@68: #endif jpayne@68: #define CYTHON_ABI "3_0_11" __PYX_EXTRA_ABI_MODULE_NAME jpayne@68: #define __PYX_ABI_MODULE_NAME "_cython_" CYTHON_ABI jpayne@68: #define __PYX_TYPE_MODULE_PREFIX __PYX_ABI_MODULE_NAME "." jpayne@68: #define CYTHON_HEX_VERSION 0x03000BF0 jpayne@68: #define CYTHON_FUTURE_DIVISION 1 jpayne@68: #include jpayne@68: #ifndef offsetof jpayne@68: #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) jpayne@68: #endif jpayne@68: #if !defined(_WIN32) && !defined(WIN32) && !defined(MS_WINDOWS) jpayne@68: #ifndef __stdcall jpayne@68: #define __stdcall jpayne@68: #endif jpayne@68: #ifndef __cdecl jpayne@68: #define __cdecl jpayne@68: #endif jpayne@68: #ifndef __fastcall jpayne@68: #define __fastcall jpayne@68: #endif jpayne@68: #endif jpayne@68: #ifndef DL_IMPORT jpayne@68: #define DL_IMPORT(t) t jpayne@68: #endif jpayne@68: #ifndef DL_EXPORT jpayne@68: #define DL_EXPORT(t) t jpayne@68: #endif jpayne@68: #define __PYX_COMMA , jpayne@68: #ifndef HAVE_LONG_LONG jpayne@68: #define HAVE_LONG_LONG jpayne@68: #endif jpayne@68: #ifndef PY_LONG_LONG jpayne@68: #define PY_LONG_LONG LONG_LONG jpayne@68: #endif jpayne@68: #ifndef Py_HUGE_VAL jpayne@68: #define Py_HUGE_VAL HUGE_VAL jpayne@68: #endif jpayne@68: #define __PYX_LIMITED_VERSION_HEX PY_VERSION_HEX jpayne@68: #if defined(GRAALVM_PYTHON) jpayne@68: /* For very preliminary testing purposes. Most variables are set the same as PyPy. jpayne@68: The existence of this section does not imply that anything works or is even tested */ jpayne@68: #define CYTHON_COMPILING_IN_PYPY 0 jpayne@68: #define CYTHON_COMPILING_IN_CPYTHON 0 jpayne@68: #define CYTHON_COMPILING_IN_LIMITED_API 0 jpayne@68: #define CYTHON_COMPILING_IN_GRAAL 1 jpayne@68: #define CYTHON_COMPILING_IN_NOGIL 0 jpayne@68: #undef CYTHON_USE_TYPE_SLOTS jpayne@68: #define CYTHON_USE_TYPE_SLOTS 0 jpayne@68: #undef CYTHON_USE_TYPE_SPECS jpayne@68: #define CYTHON_USE_TYPE_SPECS 0 jpayne@68: #undef CYTHON_USE_PYTYPE_LOOKUP jpayne@68: #define CYTHON_USE_PYTYPE_LOOKUP 0 jpayne@68: #if PY_VERSION_HEX < 0x03050000 jpayne@68: #undef CYTHON_USE_ASYNC_SLOTS jpayne@68: #define CYTHON_USE_ASYNC_SLOTS 0 jpayne@68: #elif !defined(CYTHON_USE_ASYNC_SLOTS) jpayne@68: #define CYTHON_USE_ASYNC_SLOTS 1 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_PYLIST_INTERNALS jpayne@68: #define CYTHON_USE_PYLIST_INTERNALS 0 jpayne@68: #undef CYTHON_USE_UNICODE_INTERNALS jpayne@68: #define CYTHON_USE_UNICODE_INTERNALS 0 jpayne@68: #undef CYTHON_USE_UNICODE_WRITER jpayne@68: #define CYTHON_USE_UNICODE_WRITER 0 jpayne@68: #undef CYTHON_USE_PYLONG_INTERNALS jpayne@68: #define CYTHON_USE_PYLONG_INTERNALS 0 jpayne@68: #undef CYTHON_AVOID_BORROWED_REFS jpayne@68: #define CYTHON_AVOID_BORROWED_REFS 1 jpayne@68: #undef CYTHON_ASSUME_SAFE_MACROS jpayne@68: #define CYTHON_ASSUME_SAFE_MACROS 0 jpayne@68: #undef CYTHON_UNPACK_METHODS jpayne@68: #define CYTHON_UNPACK_METHODS 0 jpayne@68: #undef CYTHON_FAST_THREAD_STATE jpayne@68: #define CYTHON_FAST_THREAD_STATE 0 jpayne@68: #undef CYTHON_FAST_GIL jpayne@68: #define CYTHON_FAST_GIL 0 jpayne@68: #undef CYTHON_METH_FASTCALL jpayne@68: #define CYTHON_METH_FASTCALL 0 jpayne@68: #undef CYTHON_FAST_PYCALL jpayne@68: #define CYTHON_FAST_PYCALL 0 jpayne@68: #ifndef CYTHON_PEP487_INIT_SUBCLASS jpayne@68: #define CYTHON_PEP487_INIT_SUBCLASS (PY_MAJOR_VERSION >= 3) jpayne@68: #endif jpayne@68: #undef CYTHON_PEP489_MULTI_PHASE_INIT jpayne@68: #define CYTHON_PEP489_MULTI_PHASE_INIT 1 jpayne@68: #undef CYTHON_USE_MODULE_STATE jpayne@68: #define CYTHON_USE_MODULE_STATE 0 jpayne@68: #undef CYTHON_USE_TP_FINALIZE jpayne@68: #define CYTHON_USE_TP_FINALIZE 0 jpayne@68: #undef CYTHON_USE_DICT_VERSIONS jpayne@68: #define CYTHON_USE_DICT_VERSIONS 0 jpayne@68: #undef CYTHON_USE_EXC_INFO_STACK jpayne@68: #define CYTHON_USE_EXC_INFO_STACK 0 jpayne@68: #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC jpayne@68: #define CYTHON_UPDATE_DESCRIPTOR_DOC 0 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_FREELISTS jpayne@68: #define CYTHON_USE_FREELISTS 0 jpayne@68: #elif defined(PYPY_VERSION) jpayne@68: #define CYTHON_COMPILING_IN_PYPY 1 jpayne@68: #define CYTHON_COMPILING_IN_CPYTHON 0 jpayne@68: #define CYTHON_COMPILING_IN_LIMITED_API 0 jpayne@68: #define CYTHON_COMPILING_IN_GRAAL 0 jpayne@68: #define CYTHON_COMPILING_IN_NOGIL 0 jpayne@68: #undef CYTHON_USE_TYPE_SLOTS jpayne@68: #define CYTHON_USE_TYPE_SLOTS 0 jpayne@68: #ifndef CYTHON_USE_TYPE_SPECS jpayne@68: #define CYTHON_USE_TYPE_SPECS 0 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_PYTYPE_LOOKUP jpayne@68: #define CYTHON_USE_PYTYPE_LOOKUP 0 jpayne@68: #if PY_VERSION_HEX < 0x03050000 jpayne@68: #undef CYTHON_USE_ASYNC_SLOTS jpayne@68: #define CYTHON_USE_ASYNC_SLOTS 0 jpayne@68: #elif !defined(CYTHON_USE_ASYNC_SLOTS) jpayne@68: #define CYTHON_USE_ASYNC_SLOTS 1 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_PYLIST_INTERNALS jpayne@68: #define CYTHON_USE_PYLIST_INTERNALS 0 jpayne@68: #undef CYTHON_USE_UNICODE_INTERNALS jpayne@68: #define CYTHON_USE_UNICODE_INTERNALS 0 jpayne@68: #undef CYTHON_USE_UNICODE_WRITER jpayne@68: #define CYTHON_USE_UNICODE_WRITER 0 jpayne@68: #undef CYTHON_USE_PYLONG_INTERNALS jpayne@68: #define CYTHON_USE_PYLONG_INTERNALS 0 jpayne@68: #undef CYTHON_AVOID_BORROWED_REFS jpayne@68: #define CYTHON_AVOID_BORROWED_REFS 1 jpayne@68: #undef CYTHON_ASSUME_SAFE_MACROS jpayne@68: #define CYTHON_ASSUME_SAFE_MACROS 0 jpayne@68: #undef CYTHON_UNPACK_METHODS jpayne@68: #define CYTHON_UNPACK_METHODS 0 jpayne@68: #undef CYTHON_FAST_THREAD_STATE jpayne@68: #define CYTHON_FAST_THREAD_STATE 0 jpayne@68: #undef CYTHON_FAST_GIL jpayne@68: #define CYTHON_FAST_GIL 0 jpayne@68: #undef CYTHON_METH_FASTCALL jpayne@68: #define CYTHON_METH_FASTCALL 0 jpayne@68: #undef CYTHON_FAST_PYCALL jpayne@68: #define CYTHON_FAST_PYCALL 0 jpayne@68: #ifndef CYTHON_PEP487_INIT_SUBCLASS jpayne@68: #define CYTHON_PEP487_INIT_SUBCLASS (PY_MAJOR_VERSION >= 3) jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x03090000 jpayne@68: #undef CYTHON_PEP489_MULTI_PHASE_INIT jpayne@68: #define CYTHON_PEP489_MULTI_PHASE_INIT 0 jpayne@68: #elif !defined(CYTHON_PEP489_MULTI_PHASE_INIT) jpayne@68: #define CYTHON_PEP489_MULTI_PHASE_INIT 1 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_MODULE_STATE jpayne@68: #define CYTHON_USE_MODULE_STATE 0 jpayne@68: #undef CYTHON_USE_TP_FINALIZE jpayne@68: #define CYTHON_USE_TP_FINALIZE (PY_VERSION_HEX >= 0x030400a1 && PYPY_VERSION_NUM >= 0x07030C00) jpayne@68: #undef CYTHON_USE_DICT_VERSIONS jpayne@68: #define CYTHON_USE_DICT_VERSIONS 0 jpayne@68: #undef CYTHON_USE_EXC_INFO_STACK jpayne@68: #define CYTHON_USE_EXC_INFO_STACK 0 jpayne@68: #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC jpayne@68: #define CYTHON_UPDATE_DESCRIPTOR_DOC 0 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_FREELISTS jpayne@68: #define CYTHON_USE_FREELISTS 0 jpayne@68: #elif defined(CYTHON_LIMITED_API) jpayne@68: #ifdef Py_LIMITED_API jpayne@68: #undef __PYX_LIMITED_VERSION_HEX jpayne@68: #define __PYX_LIMITED_VERSION_HEX Py_LIMITED_API jpayne@68: #endif jpayne@68: #define CYTHON_COMPILING_IN_PYPY 0 jpayne@68: #define CYTHON_COMPILING_IN_CPYTHON 0 jpayne@68: #define CYTHON_COMPILING_IN_LIMITED_API 1 jpayne@68: #define CYTHON_COMPILING_IN_GRAAL 0 jpayne@68: #define CYTHON_COMPILING_IN_NOGIL 0 jpayne@68: #undef CYTHON_CLINE_IN_TRACEBACK jpayne@68: #define CYTHON_CLINE_IN_TRACEBACK 0 jpayne@68: #undef CYTHON_USE_TYPE_SLOTS jpayne@68: #define CYTHON_USE_TYPE_SLOTS 0 jpayne@68: #undef CYTHON_USE_TYPE_SPECS jpayne@68: #define CYTHON_USE_TYPE_SPECS 1 jpayne@68: #undef CYTHON_USE_PYTYPE_LOOKUP jpayne@68: #define CYTHON_USE_PYTYPE_LOOKUP 0 jpayne@68: #undef CYTHON_USE_ASYNC_SLOTS jpayne@68: #define CYTHON_USE_ASYNC_SLOTS 0 jpayne@68: #undef CYTHON_USE_PYLIST_INTERNALS jpayne@68: #define CYTHON_USE_PYLIST_INTERNALS 0 jpayne@68: #undef CYTHON_USE_UNICODE_INTERNALS jpayne@68: #define CYTHON_USE_UNICODE_INTERNALS 0 jpayne@68: #ifndef CYTHON_USE_UNICODE_WRITER jpayne@68: #define CYTHON_USE_UNICODE_WRITER 0 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_PYLONG_INTERNALS jpayne@68: #define CYTHON_USE_PYLONG_INTERNALS 0 jpayne@68: #ifndef CYTHON_AVOID_BORROWED_REFS jpayne@68: #define CYTHON_AVOID_BORROWED_REFS 0 jpayne@68: #endif jpayne@68: #undef CYTHON_ASSUME_SAFE_MACROS jpayne@68: #define CYTHON_ASSUME_SAFE_MACROS 0 jpayne@68: #undef CYTHON_UNPACK_METHODS jpayne@68: #define CYTHON_UNPACK_METHODS 0 jpayne@68: #undef CYTHON_FAST_THREAD_STATE jpayne@68: #define CYTHON_FAST_THREAD_STATE 0 jpayne@68: #undef CYTHON_FAST_GIL jpayne@68: #define CYTHON_FAST_GIL 0 jpayne@68: #undef CYTHON_METH_FASTCALL jpayne@68: #define CYTHON_METH_FASTCALL 0 jpayne@68: #undef CYTHON_FAST_PYCALL jpayne@68: #define CYTHON_FAST_PYCALL 0 jpayne@68: #ifndef CYTHON_PEP487_INIT_SUBCLASS jpayne@68: #define CYTHON_PEP487_INIT_SUBCLASS 1 jpayne@68: #endif jpayne@68: #undef CYTHON_PEP489_MULTI_PHASE_INIT jpayne@68: #define CYTHON_PEP489_MULTI_PHASE_INIT 0 jpayne@68: #undef CYTHON_USE_MODULE_STATE jpayne@68: #define CYTHON_USE_MODULE_STATE 1 jpayne@68: #ifndef CYTHON_USE_TP_FINALIZE jpayne@68: #define CYTHON_USE_TP_FINALIZE 0 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_DICT_VERSIONS jpayne@68: #define CYTHON_USE_DICT_VERSIONS 0 jpayne@68: #undef CYTHON_USE_EXC_INFO_STACK jpayne@68: #define CYTHON_USE_EXC_INFO_STACK 0 jpayne@68: #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC jpayne@68: #define CYTHON_UPDATE_DESCRIPTOR_DOC 0 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_FREELISTS jpayne@68: #define CYTHON_USE_FREELISTS 0 jpayne@68: #elif defined(Py_GIL_DISABLED) || defined(Py_NOGIL) jpayne@68: #define CYTHON_COMPILING_IN_PYPY 0 jpayne@68: #define CYTHON_COMPILING_IN_CPYTHON 0 jpayne@68: #define CYTHON_COMPILING_IN_LIMITED_API 0 jpayne@68: #define CYTHON_COMPILING_IN_GRAAL 0 jpayne@68: #define CYTHON_COMPILING_IN_NOGIL 1 jpayne@68: #ifndef CYTHON_USE_TYPE_SLOTS jpayne@68: #define CYTHON_USE_TYPE_SLOTS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_TYPE_SPECS jpayne@68: #define CYTHON_USE_TYPE_SPECS 0 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_PYTYPE_LOOKUP jpayne@68: #define CYTHON_USE_PYTYPE_LOOKUP 0 jpayne@68: #ifndef CYTHON_USE_ASYNC_SLOTS jpayne@68: #define CYTHON_USE_ASYNC_SLOTS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_PYLONG_INTERNALS jpayne@68: #define CYTHON_USE_PYLONG_INTERNALS 0 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_PYLIST_INTERNALS jpayne@68: #define CYTHON_USE_PYLIST_INTERNALS 0 jpayne@68: #ifndef CYTHON_USE_UNICODE_INTERNALS jpayne@68: #define CYTHON_USE_UNICODE_INTERNALS 1 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_UNICODE_WRITER jpayne@68: #define CYTHON_USE_UNICODE_WRITER 0 jpayne@68: #ifndef CYTHON_AVOID_BORROWED_REFS jpayne@68: #define CYTHON_AVOID_BORROWED_REFS 0 jpayne@68: #endif jpayne@68: #ifndef CYTHON_ASSUME_SAFE_MACROS jpayne@68: #define CYTHON_ASSUME_SAFE_MACROS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_UNPACK_METHODS jpayne@68: #define CYTHON_UNPACK_METHODS 1 jpayne@68: #endif jpayne@68: #undef CYTHON_FAST_THREAD_STATE jpayne@68: #define CYTHON_FAST_THREAD_STATE 0 jpayne@68: #undef CYTHON_FAST_GIL jpayne@68: #define CYTHON_FAST_GIL 0 jpayne@68: #ifndef CYTHON_METH_FASTCALL jpayne@68: #define CYTHON_METH_FASTCALL 1 jpayne@68: #endif jpayne@68: #undef CYTHON_FAST_PYCALL jpayne@68: #define CYTHON_FAST_PYCALL 0 jpayne@68: #ifndef CYTHON_PEP487_INIT_SUBCLASS jpayne@68: #define CYTHON_PEP487_INIT_SUBCLASS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_PEP489_MULTI_PHASE_INIT jpayne@68: #define CYTHON_PEP489_MULTI_PHASE_INIT 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_MODULE_STATE jpayne@68: #define CYTHON_USE_MODULE_STATE 0 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_TP_FINALIZE jpayne@68: #define CYTHON_USE_TP_FINALIZE 1 jpayne@68: #endif jpayne@68: #undef CYTHON_USE_DICT_VERSIONS jpayne@68: #define CYTHON_USE_DICT_VERSIONS 0 jpayne@68: #undef CYTHON_USE_EXC_INFO_STACK jpayne@68: #define CYTHON_USE_EXC_INFO_STACK 0 jpayne@68: #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC jpayne@68: #define CYTHON_UPDATE_DESCRIPTOR_DOC 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_FREELISTS jpayne@68: #define CYTHON_USE_FREELISTS 0 jpayne@68: #endif jpayne@68: #else jpayne@68: #define CYTHON_COMPILING_IN_PYPY 0 jpayne@68: #define CYTHON_COMPILING_IN_CPYTHON 1 jpayne@68: #define CYTHON_COMPILING_IN_LIMITED_API 0 jpayne@68: #define CYTHON_COMPILING_IN_GRAAL 0 jpayne@68: #define CYTHON_COMPILING_IN_NOGIL 0 jpayne@68: #ifndef CYTHON_USE_TYPE_SLOTS jpayne@68: #define CYTHON_USE_TYPE_SLOTS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_TYPE_SPECS jpayne@68: #define CYTHON_USE_TYPE_SPECS 0 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_PYTYPE_LOOKUP jpayne@68: #define CYTHON_USE_PYTYPE_LOOKUP 1 jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: #undef CYTHON_USE_ASYNC_SLOTS jpayne@68: #define CYTHON_USE_ASYNC_SLOTS 0 jpayne@68: #elif !defined(CYTHON_USE_ASYNC_SLOTS) jpayne@68: #define CYTHON_USE_ASYNC_SLOTS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_PYLONG_INTERNALS jpayne@68: #define CYTHON_USE_PYLONG_INTERNALS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_PYLIST_INTERNALS jpayne@68: #define CYTHON_USE_PYLIST_INTERNALS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_UNICODE_INTERNALS jpayne@68: #define CYTHON_USE_UNICODE_INTERNALS 1 jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x030300F0 || PY_VERSION_HEX >= 0x030B00A2 jpayne@68: #undef CYTHON_USE_UNICODE_WRITER jpayne@68: #define CYTHON_USE_UNICODE_WRITER 0 jpayne@68: #elif !defined(CYTHON_USE_UNICODE_WRITER) jpayne@68: #define CYTHON_USE_UNICODE_WRITER 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_AVOID_BORROWED_REFS jpayne@68: #define CYTHON_AVOID_BORROWED_REFS 0 jpayne@68: #endif jpayne@68: #ifndef CYTHON_ASSUME_SAFE_MACROS jpayne@68: #define CYTHON_ASSUME_SAFE_MACROS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_UNPACK_METHODS jpayne@68: #define CYTHON_UNPACK_METHODS 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_FAST_THREAD_STATE jpayne@68: #define CYTHON_FAST_THREAD_STATE 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_FAST_GIL jpayne@68: #define CYTHON_FAST_GIL (PY_MAJOR_VERSION < 3 || PY_VERSION_HEX >= 0x03060000 && PY_VERSION_HEX < 0x030C00A6) jpayne@68: #endif jpayne@68: #ifndef CYTHON_METH_FASTCALL jpayne@68: #define CYTHON_METH_FASTCALL (PY_VERSION_HEX >= 0x030700A1) jpayne@68: #endif jpayne@68: #ifndef CYTHON_FAST_PYCALL jpayne@68: #define CYTHON_FAST_PYCALL 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_PEP487_INIT_SUBCLASS jpayne@68: #define CYTHON_PEP487_INIT_SUBCLASS 1 jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x03050000 jpayne@68: #undef CYTHON_PEP489_MULTI_PHASE_INIT jpayne@68: #define CYTHON_PEP489_MULTI_PHASE_INIT 0 jpayne@68: #elif !defined(CYTHON_PEP489_MULTI_PHASE_INIT) jpayne@68: #define CYTHON_PEP489_MULTI_PHASE_INIT 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_MODULE_STATE jpayne@68: #define CYTHON_USE_MODULE_STATE 0 jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x030400a1 jpayne@68: #undef CYTHON_USE_TP_FINALIZE jpayne@68: #define CYTHON_USE_TP_FINALIZE 0 jpayne@68: #elif !defined(CYTHON_USE_TP_FINALIZE) jpayne@68: #define CYTHON_USE_TP_FINALIZE 1 jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x030600B1 jpayne@68: #undef CYTHON_USE_DICT_VERSIONS jpayne@68: #define CYTHON_USE_DICT_VERSIONS 0 jpayne@68: #elif !defined(CYTHON_USE_DICT_VERSIONS) jpayne@68: #define CYTHON_USE_DICT_VERSIONS (PY_VERSION_HEX < 0x030C00A5) jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x030700A3 jpayne@68: #undef CYTHON_USE_EXC_INFO_STACK jpayne@68: #define CYTHON_USE_EXC_INFO_STACK 0 jpayne@68: #elif !defined(CYTHON_USE_EXC_INFO_STACK) jpayne@68: #define CYTHON_USE_EXC_INFO_STACK 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC jpayne@68: #define CYTHON_UPDATE_DESCRIPTOR_DOC 1 jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_FREELISTS jpayne@68: #define CYTHON_USE_FREELISTS 1 jpayne@68: #endif jpayne@68: #endif jpayne@68: #if !defined(CYTHON_FAST_PYCCALL) jpayne@68: #define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1) jpayne@68: #endif jpayne@68: #if !defined(CYTHON_VECTORCALL) jpayne@68: #define CYTHON_VECTORCALL (CYTHON_FAST_PYCCALL && PY_VERSION_HEX >= 0x030800B1) jpayne@68: #endif jpayne@68: #define CYTHON_BACKPORT_VECTORCALL (CYTHON_METH_FASTCALL && PY_VERSION_HEX < 0x030800B1) jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: #include "longintrepr.h" jpayne@68: #endif jpayne@68: #undef SHIFT jpayne@68: #undef BASE jpayne@68: #undef MASK jpayne@68: #ifdef SIZEOF_VOID_P jpayne@68: enum { __pyx_check_sizeof_voidp = 1 / (int)(SIZEOF_VOID_P == sizeof(void*)) }; jpayne@68: #endif jpayne@68: #endif jpayne@68: #ifndef __has_attribute jpayne@68: #define __has_attribute(x) 0 jpayne@68: #endif jpayne@68: #ifndef __has_cpp_attribute jpayne@68: #define __has_cpp_attribute(x) 0 jpayne@68: #endif jpayne@68: #ifndef CYTHON_RESTRICT jpayne@68: #if defined(__GNUC__) jpayne@68: #define CYTHON_RESTRICT __restrict__ jpayne@68: #elif defined(_MSC_VER) && _MSC_VER >= 1400 jpayne@68: #define CYTHON_RESTRICT __restrict jpayne@68: #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L jpayne@68: #define CYTHON_RESTRICT restrict jpayne@68: #else jpayne@68: #define CYTHON_RESTRICT jpayne@68: #endif jpayne@68: #endif jpayne@68: #ifndef CYTHON_UNUSED jpayne@68: #if defined(__cplusplus) jpayne@68: /* for clang __has_cpp_attribute(maybe_unused) is true even before C++17 jpayne@68: * but leads to warnings with -pedantic, since it is a C++17 feature */ jpayne@68: #if ((defined(_MSVC_LANG) && _MSVC_LANG >= 201703L) || __cplusplus >= 201703L) jpayne@68: #if __has_cpp_attribute(maybe_unused) jpayne@68: #define CYTHON_UNUSED [[maybe_unused]] jpayne@68: #endif jpayne@68: #endif jpayne@68: #endif jpayne@68: #endif jpayne@68: #ifndef CYTHON_UNUSED jpayne@68: # if defined(__GNUC__) jpayne@68: # if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) jpayne@68: # define CYTHON_UNUSED __attribute__ ((__unused__)) jpayne@68: # else jpayne@68: # define CYTHON_UNUSED jpayne@68: # endif jpayne@68: # elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) jpayne@68: # define CYTHON_UNUSED __attribute__ ((__unused__)) jpayne@68: # else jpayne@68: # define CYTHON_UNUSED jpayne@68: # endif jpayne@68: #endif jpayne@68: #ifndef CYTHON_UNUSED_VAR jpayne@68: # if defined(__cplusplus) jpayne@68: template void CYTHON_UNUSED_VAR( const T& ) { } jpayne@68: # else jpayne@68: # define CYTHON_UNUSED_VAR(x) (void)(x) jpayne@68: # endif jpayne@68: #endif jpayne@68: #ifndef CYTHON_MAYBE_UNUSED_VAR jpayne@68: #define CYTHON_MAYBE_UNUSED_VAR(x) CYTHON_UNUSED_VAR(x) jpayne@68: #endif jpayne@68: #ifndef CYTHON_NCP_UNUSED jpayne@68: # if CYTHON_COMPILING_IN_CPYTHON jpayne@68: # define CYTHON_NCP_UNUSED jpayne@68: # else jpayne@68: # define CYTHON_NCP_UNUSED CYTHON_UNUSED jpayne@68: # endif jpayne@68: #endif jpayne@68: #ifndef CYTHON_USE_CPP_STD_MOVE jpayne@68: #if defined(__cplusplus) && (\ jpayne@68: __cplusplus >= 201103L || (defined(_MSC_VER) && _MSC_VER >= 1600)) jpayne@68: #define CYTHON_USE_CPP_STD_MOVE 1 jpayne@68: #else jpayne@68: #define CYTHON_USE_CPP_STD_MOVE 0 jpayne@68: #endif jpayne@68: #endif jpayne@68: #define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) jpayne@68: #ifdef _MSC_VER jpayne@68: #ifndef _MSC_STDINT_H_ jpayne@68: #if _MSC_VER < 1300 jpayne@68: typedef unsigned char uint8_t; jpayne@68: typedef unsigned short uint16_t; jpayne@68: typedef unsigned int uint32_t; jpayne@68: #else jpayne@68: typedef unsigned __int8 uint8_t; jpayne@68: typedef unsigned __int16 uint16_t; jpayne@68: typedef unsigned __int32 uint32_t; jpayne@68: #endif jpayne@68: #endif jpayne@68: #if _MSC_VER < 1300 jpayne@68: #ifdef _WIN64 jpayne@68: typedef unsigned long long __pyx_uintptr_t; jpayne@68: #else jpayne@68: typedef unsigned int __pyx_uintptr_t; jpayne@68: #endif jpayne@68: #else jpayne@68: #ifdef _WIN64 jpayne@68: typedef unsigned __int64 __pyx_uintptr_t; jpayne@68: #else jpayne@68: typedef unsigned __int32 __pyx_uintptr_t; jpayne@68: #endif jpayne@68: #endif jpayne@68: #else jpayne@68: #include jpayne@68: typedef uintptr_t __pyx_uintptr_t; jpayne@68: #endif jpayne@68: #ifndef CYTHON_FALLTHROUGH jpayne@68: #if defined(__cplusplus) jpayne@68: /* for clang __has_cpp_attribute(fallthrough) is true even before C++17 jpayne@68: * but leads to warnings with -pedantic, since it is a C++17 feature */ jpayne@68: #if ((defined(_MSVC_LANG) && _MSVC_LANG >= 201703L) || __cplusplus >= 201703L) jpayne@68: #if __has_cpp_attribute(fallthrough) jpayne@68: #define CYTHON_FALLTHROUGH [[fallthrough]] jpayne@68: #endif jpayne@68: #endif jpayne@68: #ifndef CYTHON_FALLTHROUGH jpayne@68: #if __has_cpp_attribute(clang::fallthrough) jpayne@68: #define CYTHON_FALLTHROUGH [[clang::fallthrough]] jpayne@68: #elif __has_cpp_attribute(gnu::fallthrough) jpayne@68: #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] jpayne@68: #endif jpayne@68: #endif jpayne@68: #endif jpayne@68: #ifndef CYTHON_FALLTHROUGH jpayne@68: #if __has_attribute(fallthrough) jpayne@68: #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) jpayne@68: #else jpayne@68: #define CYTHON_FALLTHROUGH jpayne@68: #endif jpayne@68: #endif jpayne@68: #if defined(__clang__) && defined(__apple_build_version__) jpayne@68: #if __apple_build_version__ < 7000000 jpayne@68: #undef CYTHON_FALLTHROUGH jpayne@68: #define CYTHON_FALLTHROUGH jpayne@68: #endif jpayne@68: #endif jpayne@68: #endif jpayne@68: #ifdef __cplusplus jpayne@68: template jpayne@68: struct __PYX_IS_UNSIGNED_IMPL {static const bool value = T(0) < T(-1);}; jpayne@68: #define __PYX_IS_UNSIGNED(type) (__PYX_IS_UNSIGNED_IMPL::value) jpayne@68: #else jpayne@68: #define __PYX_IS_UNSIGNED(type) (((type)-1) > 0) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_PYPY == 1 jpayne@68: #define __PYX_NEED_TP_PRINT_SLOT (PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x030A0000) jpayne@68: #else jpayne@68: #define __PYX_NEED_TP_PRINT_SLOT (PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000) jpayne@68: #endif jpayne@68: #define __PYX_REINTERPRET_FUNCION(func_pointer, other_pointer) ((func_pointer)(void(*)(void))(other_pointer)) jpayne@68: jpayne@68: #ifndef CYTHON_INLINE jpayne@68: #if defined(__clang__) jpayne@68: #define CYTHON_INLINE __inline__ __attribute__ ((__unused__)) jpayne@68: #elif defined(__GNUC__) jpayne@68: #define CYTHON_INLINE __inline__ jpayne@68: #elif defined(_MSC_VER) jpayne@68: #define CYTHON_INLINE __inline jpayne@68: #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L jpayne@68: #define CYTHON_INLINE inline jpayne@68: #else jpayne@68: #define CYTHON_INLINE jpayne@68: #endif jpayne@68: #endif jpayne@68: jpayne@68: #define __PYX_BUILD_PY_SSIZE_T "n" jpayne@68: #define CYTHON_FORMAT_SSIZE_T "z" jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" jpayne@68: #define __Pyx_DefaultClassType PyClass_Type jpayne@68: #define __Pyx_PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ jpayne@68: PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) jpayne@68: #else jpayne@68: #define __Pyx_BUILTIN_MODULE_NAME "builtins" jpayne@68: #define __Pyx_DefaultClassType PyType_Type jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyCode_New(int a, int p, int k, int l, int s, int f, jpayne@68: PyObject *code, PyObject *c, PyObject* n, PyObject *v, jpayne@68: PyObject *fv, PyObject *cell, PyObject* fn, jpayne@68: PyObject *name, int fline, PyObject *lnos) { jpayne@68: PyObject *exception_table = NULL; jpayne@68: PyObject *types_module=NULL, *code_type=NULL, *result=NULL; jpayne@68: #if __PYX_LIMITED_VERSION_HEX < 0x030B0000 jpayne@68: PyObject *version_info; jpayne@68: PyObject *py_minor_version = NULL; jpayne@68: #endif jpayne@68: long minor_version = 0; jpayne@68: PyObject *type, *value, *traceback; jpayne@68: PyErr_Fetch(&type, &value, &traceback); jpayne@68: #if __PYX_LIMITED_VERSION_HEX >= 0x030B0000 jpayne@68: minor_version = 11; jpayne@68: #else jpayne@68: if (!(version_info = PySys_GetObject("version_info"))) goto end; jpayne@68: if (!(py_minor_version = PySequence_GetItem(version_info, 1))) goto end; jpayne@68: minor_version = PyLong_AsLong(py_minor_version); jpayne@68: Py_DECREF(py_minor_version); jpayne@68: if (minor_version == -1 && PyErr_Occurred()) goto end; jpayne@68: #endif jpayne@68: if (!(types_module = PyImport_ImportModule("types"))) goto end; jpayne@68: if (!(code_type = PyObject_GetAttrString(types_module, "CodeType"))) goto end; jpayne@68: if (minor_version <= 7) { jpayne@68: (void)p; jpayne@68: result = PyObject_CallFunction(code_type, "iiiiiOOOOOOiOO", a, k, l, s, f, code, jpayne@68: c, n, v, fn, name, fline, lnos, fv, cell); jpayne@68: } else if (minor_version <= 10) { jpayne@68: result = PyObject_CallFunction(code_type, "iiiiiiOOOOOOiOO", a,p, k, l, s, f, code, jpayne@68: c, n, v, fn, name, fline, lnos, fv, cell); jpayne@68: } else { jpayne@68: if (!(exception_table = PyBytes_FromStringAndSize(NULL, 0))) goto end; jpayne@68: result = PyObject_CallFunction(code_type, "iiiiiiOOOOOOOiOO", a,p, k, l, s, f, code, jpayne@68: c, n, v, fn, name, name, fline, lnos, exception_table, fv, cell); jpayne@68: } jpayne@68: end: jpayne@68: Py_XDECREF(code_type); jpayne@68: Py_XDECREF(exception_table); jpayne@68: Py_XDECREF(types_module); jpayne@68: if (type) { jpayne@68: PyErr_Restore(type, value, traceback); jpayne@68: } jpayne@68: return result; jpayne@68: } jpayne@68: #ifndef CO_OPTIMIZED jpayne@68: #define CO_OPTIMIZED 0x0001 jpayne@68: #endif jpayne@68: #ifndef CO_NEWLOCALS jpayne@68: #define CO_NEWLOCALS 0x0002 jpayne@68: #endif jpayne@68: #ifndef CO_VARARGS jpayne@68: #define CO_VARARGS 0x0004 jpayne@68: #endif jpayne@68: #ifndef CO_VARKEYWORDS jpayne@68: #define CO_VARKEYWORDS 0x0008 jpayne@68: #endif jpayne@68: #ifndef CO_ASYNC_GENERATOR jpayne@68: #define CO_ASYNC_GENERATOR 0x0200 jpayne@68: #endif jpayne@68: #ifndef CO_GENERATOR jpayne@68: #define CO_GENERATOR 0x0020 jpayne@68: #endif jpayne@68: #ifndef CO_COROUTINE jpayne@68: #define CO_COROUTINE 0x0080 jpayne@68: #endif jpayne@68: #elif PY_VERSION_HEX >= 0x030B0000 jpayne@68: static CYTHON_INLINE PyCodeObject* __Pyx_PyCode_New(int a, int p, int k, int l, int s, int f, jpayne@68: PyObject *code, PyObject *c, PyObject* n, PyObject *v, jpayne@68: PyObject *fv, PyObject *cell, PyObject* fn, jpayne@68: PyObject *name, int fline, PyObject *lnos) { jpayne@68: PyCodeObject *result; jpayne@68: PyObject *empty_bytes = PyBytes_FromStringAndSize("", 0); jpayne@68: if (!empty_bytes) return NULL; jpayne@68: result = jpayne@68: #if PY_VERSION_HEX >= 0x030C0000 jpayne@68: PyUnstable_Code_NewWithPosOnlyArgs jpayne@68: #else jpayne@68: PyCode_NewWithPosOnlyArgs jpayne@68: #endif jpayne@68: (a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, name, fline, lnos, empty_bytes); jpayne@68: Py_DECREF(empty_bytes); jpayne@68: return result; jpayne@68: } jpayne@68: #elif PY_VERSION_HEX >= 0x030800B2 && !CYTHON_COMPILING_IN_PYPY jpayne@68: #define __Pyx_PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ jpayne@68: PyCode_NewWithPosOnlyArgs(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) jpayne@68: #else jpayne@68: #define __Pyx_PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ jpayne@68: PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) jpayne@68: #endif jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030900A4 || defined(Py_IS_TYPE) jpayne@68: #define __Pyx_IS_TYPE(ob, type) Py_IS_TYPE(ob, type) jpayne@68: #else jpayne@68: #define __Pyx_IS_TYPE(ob, type) (((const PyObject*)ob)->ob_type == (type)) jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_Is) jpayne@68: #define __Pyx_Py_Is(x, y) Py_Is(x, y) jpayne@68: #else jpayne@68: #define __Pyx_Py_Is(x, y) ((x) == (y)) jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsNone) jpayne@68: #define __Pyx_Py_IsNone(ob) Py_IsNone(ob) jpayne@68: #else jpayne@68: #define __Pyx_Py_IsNone(ob) __Pyx_Py_Is((ob), Py_None) jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsTrue) jpayne@68: #define __Pyx_Py_IsTrue(ob) Py_IsTrue(ob) jpayne@68: #else jpayne@68: #define __Pyx_Py_IsTrue(ob) __Pyx_Py_Is((ob), Py_True) jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsFalse) jpayne@68: #define __Pyx_Py_IsFalse(ob) Py_IsFalse(ob) jpayne@68: #else jpayne@68: #define __Pyx_Py_IsFalse(ob) __Pyx_Py_Is((ob), Py_False) jpayne@68: #endif jpayne@68: #define __Pyx_NoneAsNull(obj) (__Pyx_Py_IsNone(obj) ? NULL : (obj)) jpayne@68: #if PY_VERSION_HEX >= 0x030900F0 && !CYTHON_COMPILING_IN_PYPY jpayne@68: #define __Pyx_PyObject_GC_IsFinalized(o) PyObject_GC_IsFinalized(o) jpayne@68: #else jpayne@68: #define __Pyx_PyObject_GC_IsFinalized(o) _PyGC_FINALIZED(o) jpayne@68: #endif jpayne@68: #ifndef CO_COROUTINE jpayne@68: #define CO_COROUTINE 0x80 jpayne@68: #endif jpayne@68: #ifndef CO_ASYNC_GENERATOR jpayne@68: #define CO_ASYNC_GENERATOR 0x200 jpayne@68: #endif jpayne@68: #ifndef Py_TPFLAGS_CHECKTYPES jpayne@68: #define Py_TPFLAGS_CHECKTYPES 0 jpayne@68: #endif jpayne@68: #ifndef Py_TPFLAGS_HAVE_INDEX jpayne@68: #define Py_TPFLAGS_HAVE_INDEX 0 jpayne@68: #endif jpayne@68: #ifndef Py_TPFLAGS_HAVE_NEWBUFFER jpayne@68: #define Py_TPFLAGS_HAVE_NEWBUFFER 0 jpayne@68: #endif jpayne@68: #ifndef Py_TPFLAGS_HAVE_FINALIZE jpayne@68: #define Py_TPFLAGS_HAVE_FINALIZE 0 jpayne@68: #endif jpayne@68: #ifndef Py_TPFLAGS_SEQUENCE jpayne@68: #define Py_TPFLAGS_SEQUENCE 0 jpayne@68: #endif jpayne@68: #ifndef Py_TPFLAGS_MAPPING jpayne@68: #define Py_TPFLAGS_MAPPING 0 jpayne@68: #endif jpayne@68: #ifndef METH_STACKLESS jpayne@68: #define METH_STACKLESS 0 jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX <= 0x030700A3 || !defined(METH_FASTCALL) jpayne@68: #ifndef METH_FASTCALL jpayne@68: #define METH_FASTCALL 0x80 jpayne@68: #endif jpayne@68: typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject *const *args, Py_ssize_t nargs); jpayne@68: typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject *const *args, jpayne@68: Py_ssize_t nargs, PyObject *kwnames); jpayne@68: #else jpayne@68: #if PY_VERSION_HEX >= 0x030d00A4 jpayne@68: # define __Pyx_PyCFunctionFast PyCFunctionFast jpayne@68: # define __Pyx_PyCFunctionFastWithKeywords PyCFunctionFastWithKeywords jpayne@68: #else jpayne@68: # define __Pyx_PyCFunctionFast _PyCFunctionFast jpayne@68: # define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords jpayne@68: #endif jpayne@68: #endif jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: #define __Pyx_METH_FASTCALL METH_FASTCALL jpayne@68: #define __Pyx_PyCFunction_FastCall __Pyx_PyCFunctionFast jpayne@68: #define __Pyx_PyCFunction_FastCallWithKeywords __Pyx_PyCFunctionFastWithKeywords jpayne@68: #else jpayne@68: #define __Pyx_METH_FASTCALL METH_VARARGS jpayne@68: #define __Pyx_PyCFunction_FastCall PyCFunction jpayne@68: #define __Pyx_PyCFunction_FastCallWithKeywords PyCFunctionWithKeywords jpayne@68: #endif jpayne@68: #if CYTHON_VECTORCALL jpayne@68: #define __pyx_vectorcallfunc vectorcallfunc jpayne@68: #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET PY_VECTORCALL_ARGUMENTS_OFFSET jpayne@68: #define __Pyx_PyVectorcall_NARGS(n) PyVectorcall_NARGS((size_t)(n)) jpayne@68: #elif CYTHON_BACKPORT_VECTORCALL jpayne@68: typedef PyObject *(*__pyx_vectorcallfunc)(PyObject *callable, PyObject *const *args, jpayne@68: size_t nargsf, PyObject *kwnames); jpayne@68: #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET ((size_t)1 << (8 * sizeof(size_t) - 1)) jpayne@68: #define __Pyx_PyVectorcall_NARGS(n) ((Py_ssize_t)(((size_t)(n)) & ~__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET)) jpayne@68: #else jpayne@68: #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET 0 jpayne@68: #define __Pyx_PyVectorcall_NARGS(n) ((Py_ssize_t)(n)) jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 0x030900B1 jpayne@68: #define __Pyx_PyCFunction_CheckExact(func) PyCFunction_CheckExact(func) jpayne@68: #else jpayne@68: #define __Pyx_PyCFunction_CheckExact(func) PyCFunction_Check(func) jpayne@68: #endif jpayne@68: #define __Pyx_CyOrPyCFunction_Check(func) PyCFunction_Check(func) jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: #define __Pyx_CyOrPyCFunction_GET_FUNCTION(func) (((PyCFunctionObject*)(func))->m_ml->ml_meth) jpayne@68: #elif !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #define __Pyx_CyOrPyCFunction_GET_FUNCTION(func) PyCFunction_GET_FUNCTION(func) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: #define __Pyx_CyOrPyCFunction_GET_FLAGS(func) (((PyCFunctionObject*)(func))->m_ml->ml_flags) jpayne@68: static CYTHON_INLINE PyObject* __Pyx_CyOrPyCFunction_GET_SELF(PyObject *func) { jpayne@68: return (__Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_STATIC) ? NULL : ((PyCFunctionObject*)func)->m_self; jpayne@68: } jpayne@68: #endif jpayne@68: static CYTHON_INLINE int __Pyx__IsSameCFunction(PyObject *func, void *cfunc) { jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: return PyCFunction_Check(func) && PyCFunction_GetFunction(func) == (PyCFunction) cfunc; jpayne@68: #else jpayne@68: return PyCFunction_Check(func) && PyCFunction_GET_FUNCTION(func) == (PyCFunction) cfunc; jpayne@68: #endif jpayne@68: } jpayne@68: #define __Pyx_IsSameCFunction(func, cfunc) __Pyx__IsSameCFunction(func, cfunc) jpayne@68: #if __PYX_LIMITED_VERSION_HEX < 0x030900B1 jpayne@68: #define __Pyx_PyType_FromModuleAndSpec(m, s, b) ((void)m, PyType_FromSpecWithBases(s, b)) jpayne@68: typedef PyObject *(*__Pyx_PyCMethod)(PyObject *, PyTypeObject *, PyObject *const *, size_t, PyObject *); jpayne@68: #else jpayne@68: #define __Pyx_PyType_FromModuleAndSpec(m, s, b) PyType_FromModuleAndSpec(m, s, b) jpayne@68: #define __Pyx_PyCMethod PyCMethod jpayne@68: #endif jpayne@68: #ifndef METH_METHOD jpayne@68: #define METH_METHOD 0x200 jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc) jpayne@68: #define PyObject_Malloc(s) PyMem_Malloc(s) jpayne@68: #define PyObject_Free(p) PyMem_Free(p) jpayne@68: #define PyObject_Realloc(p) PyMem_Realloc(p) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) jpayne@68: #define __Pyx_PyFrame_SetLineNumber(frame, lineno) jpayne@68: #else jpayne@68: #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) jpayne@68: #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #define __Pyx_PyThreadState_Current PyThreadState_Get() jpayne@68: #elif !CYTHON_FAST_THREAD_STATE jpayne@68: #define __Pyx_PyThreadState_Current PyThreadState_GET() jpayne@68: #elif PY_VERSION_HEX >= 0x030d00A1 jpayne@68: #define __Pyx_PyThreadState_Current PyThreadState_GetUnchecked() jpayne@68: #elif PY_VERSION_HEX >= 0x03060000 jpayne@68: #define __Pyx_PyThreadState_Current _PyThreadState_UncheckedGet() jpayne@68: #elif PY_VERSION_HEX >= 0x03000000 jpayne@68: #define __Pyx_PyThreadState_Current PyThreadState_GET() jpayne@68: #else jpayne@68: #define __Pyx_PyThreadState_Current _PyThreadState_Current jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static CYTHON_INLINE void *__Pyx_PyModule_GetState(PyObject *op) jpayne@68: { jpayne@68: void *result; jpayne@68: result = PyModule_GetState(op); jpayne@68: if (!result) jpayne@68: Py_FatalError("Couldn't find the module state"); jpayne@68: return result; jpayne@68: } jpayne@68: #endif jpayne@68: #define __Pyx_PyObject_GetSlot(obj, name, func_ctype) __Pyx_PyType_GetSlot(Py_TYPE(obj), name, func_ctype) jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #define __Pyx_PyType_GetSlot(type, name, func_ctype) ((func_ctype) PyType_GetSlot((type), Py_##name)) jpayne@68: #else jpayne@68: #define __Pyx_PyType_GetSlot(type, name, func_ctype) ((type)->name) jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x030700A2 && !defined(PyThread_tss_create) && !defined(Py_tss_NEEDS_INIT) jpayne@68: #include "pythread.h" jpayne@68: #define Py_tss_NEEDS_INIT 0 jpayne@68: typedef int Py_tss_t; jpayne@68: static CYTHON_INLINE int PyThread_tss_create(Py_tss_t *key) { jpayne@68: *key = PyThread_create_key(); jpayne@68: return 0; jpayne@68: } jpayne@68: static CYTHON_INLINE Py_tss_t * PyThread_tss_alloc(void) { jpayne@68: Py_tss_t *key = (Py_tss_t *)PyObject_Malloc(sizeof(Py_tss_t)); jpayne@68: *key = Py_tss_NEEDS_INIT; jpayne@68: return key; jpayne@68: } jpayne@68: static CYTHON_INLINE void PyThread_tss_free(Py_tss_t *key) { jpayne@68: PyObject_Free(key); jpayne@68: } jpayne@68: static CYTHON_INLINE int PyThread_tss_is_created(Py_tss_t *key) { jpayne@68: return *key != Py_tss_NEEDS_INIT; jpayne@68: } jpayne@68: static CYTHON_INLINE void PyThread_tss_delete(Py_tss_t *key) { jpayne@68: PyThread_delete_key(*key); jpayne@68: *key = Py_tss_NEEDS_INIT; jpayne@68: } jpayne@68: static CYTHON_INLINE int PyThread_tss_set(Py_tss_t *key, void *value) { jpayne@68: return PyThread_set_key_value(*key, value); jpayne@68: } jpayne@68: static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) { jpayne@68: return PyThread_get_key_value(*key); jpayne@68: } jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: #if CYTHON_COMPILING_IN_PYPY jpayne@68: #if PYPY_VERSION_NUM < 0x07030600 jpayne@68: #if defined(__cplusplus) && __cplusplus >= 201402L jpayne@68: [[deprecated("`with nogil:` inside a nogil function will not release the GIL in PyPy2 < 7.3.6")]] jpayne@68: #elif defined(__GNUC__) || defined(__clang__) jpayne@68: __attribute__ ((__deprecated__("`with nogil:` inside a nogil function will not release the GIL in PyPy2 < 7.3.6"))) jpayne@68: #elif defined(_MSC_VER) jpayne@68: __declspec(deprecated("`with nogil:` inside a nogil function will not release the GIL in PyPy2 < 7.3.6")) jpayne@68: #endif jpayne@68: static CYTHON_INLINE int PyGILState_Check(void) { jpayne@68: return 0; jpayne@68: } jpayne@68: #else // PYPY_VERSION_NUM < 0x07030600 jpayne@68: #endif // PYPY_VERSION_NUM < 0x07030600 jpayne@68: #else jpayne@68: static CYTHON_INLINE int PyGILState_Check(void) { jpayne@68: PyThreadState * tstate = _PyThreadState_Current; jpayne@68: return tstate && (tstate == PyGILState_GetThisThreadState()); jpayne@68: } jpayne@68: #endif jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030d0000 || defined(_PyDict_NewPresized) jpayne@68: #define __Pyx_PyDict_NewPresized(n) ((n <= 8) ? PyDict_New() : _PyDict_NewPresized(n)) jpayne@68: #else jpayne@68: #define __Pyx_PyDict_NewPresized(n) PyDict_New() jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 || CYTHON_FUTURE_DIVISION jpayne@68: #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) jpayne@68: #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) jpayne@68: #else jpayne@68: #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) jpayne@68: #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX > 0x030600B4 && PY_VERSION_HEX < 0x030d0000 && CYTHON_USE_UNICODE_INTERNALS jpayne@68: #define __Pyx_PyDict_GetItemStrWithError(dict, name) _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash) jpayne@68: static CYTHON_INLINE PyObject * __Pyx_PyDict_GetItemStr(PyObject *dict, PyObject *name) { jpayne@68: PyObject *res = __Pyx_PyDict_GetItemStrWithError(dict, name); jpayne@68: if (res == NULL) PyErr_Clear(); jpayne@68: return res; jpayne@68: } jpayne@68: #elif PY_MAJOR_VERSION >= 3 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07020000) jpayne@68: #define __Pyx_PyDict_GetItemStrWithError PyDict_GetItemWithError jpayne@68: #define __Pyx_PyDict_GetItemStr PyDict_GetItem jpayne@68: #else jpayne@68: static CYTHON_INLINE PyObject * __Pyx_PyDict_GetItemStrWithError(PyObject *dict, PyObject *name) { jpayne@68: #if CYTHON_COMPILING_IN_PYPY jpayne@68: return PyDict_GetItem(dict, name); jpayne@68: #else jpayne@68: PyDictEntry *ep; jpayne@68: PyDictObject *mp = (PyDictObject*) dict; jpayne@68: long hash = ((PyStringObject *) name)->ob_shash; jpayne@68: assert(hash != -1); jpayne@68: ep = (mp->ma_lookup)(mp, name, hash); jpayne@68: if (ep == NULL) { jpayne@68: return NULL; jpayne@68: } jpayne@68: return ep->me_value; jpayne@68: #endif jpayne@68: } jpayne@68: #define __Pyx_PyDict_GetItemStr PyDict_GetItem jpayne@68: #endif jpayne@68: #if CYTHON_USE_TYPE_SLOTS jpayne@68: #define __Pyx_PyType_GetFlags(tp) (((PyTypeObject *)tp)->tp_flags) jpayne@68: #define __Pyx_PyType_HasFeature(type, feature) ((__Pyx_PyType_GetFlags(type) & (feature)) != 0) jpayne@68: #define __Pyx_PyObject_GetIterNextFunc(obj) (Py_TYPE(obj)->tp_iternext) jpayne@68: #else jpayne@68: #define __Pyx_PyType_GetFlags(tp) (PyType_GetFlags((PyTypeObject *)tp)) jpayne@68: #define __Pyx_PyType_HasFeature(type, feature) PyType_HasFeature(type, feature) jpayne@68: #define __Pyx_PyObject_GetIterNextFunc(obj) PyIter_Next jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #define __Pyx_SetItemOnTypeDict(tp, k, v) PyObject_GenericSetAttr((PyObject*)tp, k, v) jpayne@68: #else jpayne@68: #define __Pyx_SetItemOnTypeDict(tp, k, v) PyDict_SetItem(tp->tp_dict, k, v) jpayne@68: #endif jpayne@68: #if CYTHON_USE_TYPE_SPECS && PY_VERSION_HEX >= 0x03080000 jpayne@68: #define __Pyx_PyHeapTypeObject_GC_Del(obj) {\ jpayne@68: PyTypeObject *type = Py_TYPE((PyObject*)obj);\ jpayne@68: assert(__Pyx_PyType_HasFeature(type, Py_TPFLAGS_HEAPTYPE));\ jpayne@68: PyObject_GC_Del(obj);\ jpayne@68: Py_DECREF(type);\ jpayne@68: } jpayne@68: #else jpayne@68: #define __Pyx_PyHeapTypeObject_GC_Del(obj) PyObject_GC_Del(obj) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #define CYTHON_PEP393_ENABLED 1 jpayne@68: #define __Pyx_PyUnicode_READY(op) (0) jpayne@68: #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GetLength(u) jpayne@68: #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_ReadChar(u, i) jpayne@68: #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((void)u, 1114111U) jpayne@68: #define __Pyx_PyUnicode_KIND(u) ((void)u, (0)) jpayne@68: #define __Pyx_PyUnicode_DATA(u) ((void*)u) jpayne@68: #define __Pyx_PyUnicode_READ(k, d, i) ((void)k, PyUnicode_ReadChar((PyObject*)(d), i)) jpayne@68: #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GetLength(u)) jpayne@68: #elif PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) jpayne@68: #define CYTHON_PEP393_ENABLED 1 jpayne@68: #if PY_VERSION_HEX >= 0x030C0000 jpayne@68: #define __Pyx_PyUnicode_READY(op) (0) jpayne@68: #else jpayne@68: #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\ jpayne@68: 0 : _PyUnicode_Ready((PyObject *)(op))) jpayne@68: #endif jpayne@68: #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) jpayne@68: #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) jpayne@68: #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u) jpayne@68: #define __Pyx_PyUnicode_KIND(u) ((int)PyUnicode_KIND(u)) jpayne@68: #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) jpayne@68: #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) jpayne@68: #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, (Py_UCS4) ch) jpayne@68: #if PY_VERSION_HEX >= 0x030C0000 jpayne@68: #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_LENGTH(u)) jpayne@68: #else jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03090000 jpayne@68: #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : ((PyCompactUnicodeObject *)(u))->wstr_length)) jpayne@68: #else jpayne@68: #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u))) jpayne@68: #endif jpayne@68: #endif jpayne@68: #else jpayne@68: #define CYTHON_PEP393_ENABLED 0 jpayne@68: #define PyUnicode_1BYTE_KIND 1 jpayne@68: #define PyUnicode_2BYTE_KIND 2 jpayne@68: #define PyUnicode_4BYTE_KIND 4 jpayne@68: #define __Pyx_PyUnicode_READY(op) (0) jpayne@68: #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) jpayne@68: #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) jpayne@68: #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535U : 1114111U) jpayne@68: #define __Pyx_PyUnicode_KIND(u) ((int)sizeof(Py_UNICODE)) jpayne@68: #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) jpayne@68: #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) jpayne@68: #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = (Py_UNICODE) ch) jpayne@68: #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u)) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_PYPY jpayne@68: #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) jpayne@68: #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) jpayne@68: #else jpayne@68: #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) jpayne@68: #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\ jpayne@68: PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_PYPY jpayne@68: #if !defined(PyUnicode_DecodeUnicodeEscape) jpayne@68: #define PyUnicode_DecodeUnicodeEscape(s, size, errors) PyUnicode_Decode(s, size, "unicode_escape", errors) jpayne@68: #endif jpayne@68: #if !defined(PyUnicode_Contains) || (PY_MAJOR_VERSION == 2 && PYPY_VERSION_NUM < 0x07030500) jpayne@68: #undef PyUnicode_Contains jpayne@68: #define PyUnicode_Contains(u, s) PySequence_Contains(u, s) jpayne@68: #endif jpayne@68: #if !defined(PyByteArray_Check) jpayne@68: #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type) jpayne@68: #endif jpayne@68: #if !defined(PyObject_Format) jpayne@68: #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt) jpayne@68: #endif jpayne@68: #endif jpayne@68: #define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyString_Check(b) && !PyString_CheckExact(b)))) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) jpayne@68: #define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyUnicode_Check(b) && !PyUnicode_CheckExact(b)))) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b) jpayne@68: #else jpayne@68: #define __Pyx_PyString_Format(a, b) PyString_Format(a, b) jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII) jpayne@68: #define PyObject_ASCII(o) PyObject_Repr(o) jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: #define PyBaseString_Type PyUnicode_Type jpayne@68: #define PyStringObject PyUnicodeObject jpayne@68: #define PyString_Type PyUnicode_Type jpayne@68: #define PyString_Check PyUnicode_Check jpayne@68: #define PyString_CheckExact PyUnicode_CheckExact jpayne@68: #ifndef PyObject_Unicode jpayne@68: #define PyObject_Unicode PyObject_Str jpayne@68: #endif jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj) jpayne@68: #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj) jpayne@68: #else jpayne@68: #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj)) jpayne@68: #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj)) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: #define __Pyx_PySequence_ListKeepNew(obj)\ jpayne@68: (likely(PyList_CheckExact(obj) && Py_REFCNT(obj) == 1) ? __Pyx_NewRef(obj) : PySequence_List(obj)) jpayne@68: #else jpayne@68: #define __Pyx_PySequence_ListKeepNew(obj) PySequence_List(obj) jpayne@68: #endif jpayne@68: #ifndef PySet_CheckExact jpayne@68: #define PySet_CheckExact(obj) __Pyx_IS_TYPE(obj, &PySet_Type) jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030900A4 jpayne@68: #define __Pyx_SET_REFCNT(obj, refcnt) Py_SET_REFCNT(obj, refcnt) jpayne@68: #define __Pyx_SET_SIZE(obj, size) Py_SET_SIZE(obj, size) jpayne@68: #else jpayne@68: #define __Pyx_SET_REFCNT(obj, refcnt) Py_REFCNT(obj) = (refcnt) jpayne@68: #define __Pyx_SET_SIZE(obj, size) Py_SIZE(obj) = (size) jpayne@68: #endif jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: #define __Pyx_PySequence_ITEM(o, i) PySequence_ITEM(o, i) jpayne@68: #define __Pyx_PySequence_SIZE(seq) Py_SIZE(seq) jpayne@68: #define __Pyx_PyTuple_SET_ITEM(o, i, v) (PyTuple_SET_ITEM(o, i, v), (0)) jpayne@68: #define __Pyx_PyList_SET_ITEM(o, i, v) (PyList_SET_ITEM(o, i, v), (0)) jpayne@68: #define __Pyx_PyTuple_GET_SIZE(o) PyTuple_GET_SIZE(o) jpayne@68: #define __Pyx_PyList_GET_SIZE(o) PyList_GET_SIZE(o) jpayne@68: #define __Pyx_PySet_GET_SIZE(o) PySet_GET_SIZE(o) jpayne@68: #define __Pyx_PyBytes_GET_SIZE(o) PyBytes_GET_SIZE(o) jpayne@68: #define __Pyx_PyByteArray_GET_SIZE(o) PyByteArray_GET_SIZE(o) jpayne@68: #else jpayne@68: #define __Pyx_PySequence_ITEM(o, i) PySequence_GetItem(o, i) jpayne@68: #define __Pyx_PySequence_SIZE(seq) PySequence_Size(seq) jpayne@68: #define __Pyx_PyTuple_SET_ITEM(o, i, v) PyTuple_SetItem(o, i, v) jpayne@68: #define __Pyx_PyList_SET_ITEM(o, i, v) PyList_SetItem(o, i, v) jpayne@68: #define __Pyx_PyTuple_GET_SIZE(o) PyTuple_Size(o) jpayne@68: #define __Pyx_PyList_GET_SIZE(o) PyList_Size(o) jpayne@68: #define __Pyx_PySet_GET_SIZE(o) PySet_Size(o) jpayne@68: #define __Pyx_PyBytes_GET_SIZE(o) PyBytes_Size(o) jpayne@68: #define __Pyx_PyByteArray_GET_SIZE(o) PyByteArray_Size(o) jpayne@68: #endif jpayne@68: #if __PYX_LIMITED_VERSION_HEX >= 0x030d00A1 jpayne@68: #define __Pyx_PyImport_AddModuleRef(name) PyImport_AddModuleRef(name) jpayne@68: #else jpayne@68: static CYTHON_INLINE PyObject *__Pyx_PyImport_AddModuleRef(const char *name) { jpayne@68: PyObject *module = PyImport_AddModule(name); jpayne@68: Py_XINCREF(module); jpayne@68: return module; jpayne@68: } jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: #define PyIntObject PyLongObject jpayne@68: #define PyInt_Type PyLong_Type jpayne@68: #define PyInt_Check(op) PyLong_Check(op) jpayne@68: #define PyInt_CheckExact(op) PyLong_CheckExact(op) jpayne@68: #define __Pyx_Py3Int_Check(op) PyLong_Check(op) jpayne@68: #define __Pyx_Py3Int_CheckExact(op) PyLong_CheckExact(op) jpayne@68: #define PyInt_FromString PyLong_FromString jpayne@68: #define PyInt_FromUnicode PyLong_FromUnicode jpayne@68: #define PyInt_FromLong PyLong_FromLong jpayne@68: #define PyInt_FromSize_t PyLong_FromSize_t jpayne@68: #define PyInt_FromSsize_t PyLong_FromSsize_t jpayne@68: #define PyInt_AsLong PyLong_AsLong jpayne@68: #define PyInt_AS_LONG PyLong_AS_LONG jpayne@68: #define PyInt_AsSsize_t PyLong_AsSsize_t jpayne@68: #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask jpayne@68: #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask jpayne@68: #define PyNumber_Int PyNumber_Long jpayne@68: #else jpayne@68: #define __Pyx_Py3Int_Check(op) (PyLong_Check(op) || PyInt_Check(op)) jpayne@68: #define __Pyx_Py3Int_CheckExact(op) (PyLong_CheckExact(op) || PyInt_CheckExact(op)) jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: #define PyBoolObject PyLongObject jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY jpayne@68: #ifndef PyUnicode_InternFromString jpayne@68: #define PyUnicode_InternFromString(s) PyUnicode_FromString(s) jpayne@68: #endif jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x030200A4 jpayne@68: typedef long Py_hash_t; jpayne@68: #define __Pyx_PyInt_FromHash_t PyInt_FromLong jpayne@68: #define __Pyx_PyInt_AsHash_t __Pyx_PyIndex_AsHash_t jpayne@68: #else jpayne@68: #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t jpayne@68: #define __Pyx_PyInt_AsHash_t __Pyx_PyIndex_AsSsize_t jpayne@68: #endif jpayne@68: #if CYTHON_USE_ASYNC_SLOTS jpayne@68: #if PY_VERSION_HEX >= 0x030500B1 jpayne@68: #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods jpayne@68: #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async) jpayne@68: #else jpayne@68: #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved)) jpayne@68: #endif jpayne@68: #else jpayne@68: #define __Pyx_PyType_AsAsync(obj) NULL jpayne@68: #endif jpayne@68: #ifndef __Pyx_PyAsyncMethodsStruct jpayne@68: typedef struct { jpayne@68: unaryfunc am_await; jpayne@68: unaryfunc am_aiter; jpayne@68: unaryfunc am_anext; jpayne@68: } __Pyx_PyAsyncMethodsStruct; jpayne@68: #endif jpayne@68: jpayne@68: #if defined(_WIN32) || defined(WIN32) || defined(MS_WINDOWS) jpayne@68: #if !defined(_USE_MATH_DEFINES) jpayne@68: #define _USE_MATH_DEFINES jpayne@68: #endif jpayne@68: #endif jpayne@68: #include jpayne@68: #ifdef NAN jpayne@68: #define __PYX_NAN() ((float) NAN) jpayne@68: #else jpayne@68: static CYTHON_INLINE float __PYX_NAN() { jpayne@68: float value; jpayne@68: memset(&value, 0xFF, sizeof(value)); jpayne@68: return value; jpayne@68: } jpayne@68: #endif jpayne@68: #if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL) jpayne@68: #define __Pyx_truncl trunc jpayne@68: #else jpayne@68: #define __Pyx_truncl truncl jpayne@68: #endif jpayne@68: jpayne@68: #define __PYX_MARK_ERR_POS(f_index, lineno) \ jpayne@68: { __pyx_filename = __pyx_f[f_index]; (void)__pyx_filename; __pyx_lineno = lineno; (void)__pyx_lineno; __pyx_clineno = __LINE__; (void)__pyx_clineno; } jpayne@68: #define __PYX_ERR(f_index, lineno, Ln_error) \ jpayne@68: { __PYX_MARK_ERR_POS(f_index, lineno) goto Ln_error; } jpayne@68: jpayne@68: #ifdef CYTHON_EXTERN_C jpayne@68: #undef __PYX_EXTERN_C jpayne@68: #define __PYX_EXTERN_C CYTHON_EXTERN_C jpayne@68: #elif defined(__PYX_EXTERN_C) jpayne@68: #ifdef _MSC_VER jpayne@68: #pragma message ("Please do not define the '__PYX_EXTERN_C' macro externally. Use 'CYTHON_EXTERN_C' instead.") jpayne@68: #else jpayne@68: #warning Please do not define the '__PYX_EXTERN_C' macro externally. Use 'CYTHON_EXTERN_C' instead. jpayne@68: #endif jpayne@68: #else jpayne@68: #ifdef __cplusplus jpayne@68: #define __PYX_EXTERN_C extern "C" jpayne@68: #else jpayne@68: #define __PYX_EXTERN_C extern jpayne@68: #endif jpayne@68: #endif jpayne@68: jpayne@68: #define __PYX_HAVE__pysam__libchtslib jpayne@68: #define __PYX_HAVE_API__pysam__libchtslib jpayne@68: /* Early includes */ jpayne@68: #include jpayne@68: #include jpayne@68: #include jpayne@68: #include jpayne@68: #include jpayne@68: #include "stdarg.h" jpayne@68: #include "htslib/kstring.h" jpayne@68: #include "htslib_util.h" jpayne@68: #include "htslib/hfile.h" jpayne@68: #include "htslib/bgzf.h" jpayne@68: #include "htslib/hts.h" jpayne@68: #include "htslib/sam.h" jpayne@68: #include "htslib/faidx.h" jpayne@68: #include "htslib/tbx.h" jpayne@68: #include "htslib/vcf.h" jpayne@68: #include "htslib/vcfutils.h" jpayne@68: #include "htslib/cram.h" jpayne@68: #include jpayne@68: #include jpayne@68: #include jpayne@68: #include "pythread.h" jpayne@68: jpayne@68: #if CYTHON_COMPILING_IN_PYPY jpayne@68: #ifdef _MSC_VER jpayne@68: #pragma message ("This module uses CPython specific internals of 'array.array', which are not available in PyPy.") jpayne@68: #else jpayne@68: #warning This module uses CPython specific internals of 'array.array', which are not available in PyPy. jpayne@68: #endif jpayne@68: #endif jpayne@68: jpayne@68: #ifdef _OPENMP jpayne@68: #include jpayne@68: #endif /* _OPENMP */ jpayne@68: jpayne@68: #if defined(PYREX_WITHOUT_ASSERTIONS) && !defined(CYTHON_WITHOUT_ASSERTIONS) jpayne@68: #define CYTHON_WITHOUT_ASSERTIONS jpayne@68: #endif jpayne@68: jpayne@68: typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding; jpayne@68: const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; jpayne@68: jpayne@68: #define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 jpayne@68: #define __PYX_DEFAULT_STRING_ENCODING_IS_UTF8 0 jpayne@68: #define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT (PY_MAJOR_VERSION >= 3 && __PYX_DEFAULT_STRING_ENCODING_IS_UTF8) jpayne@68: #define __PYX_DEFAULT_STRING_ENCODING "" jpayne@68: #define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString jpayne@68: #define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize jpayne@68: #define __Pyx_uchar_cast(c) ((unsigned char)c) jpayne@68: #define __Pyx_long_cast(x) ((long)x) jpayne@68: #define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\ jpayne@68: (sizeof(type) < sizeof(Py_ssize_t)) ||\ jpayne@68: (sizeof(type) > sizeof(Py_ssize_t) &&\ jpayne@68: likely(v < (type)PY_SSIZE_T_MAX ||\ jpayne@68: v == (type)PY_SSIZE_T_MAX) &&\ jpayne@68: (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\ jpayne@68: v == (type)PY_SSIZE_T_MIN))) ||\ jpayne@68: (sizeof(type) == sizeof(Py_ssize_t) &&\ jpayne@68: (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\ jpayne@68: v == (type)PY_SSIZE_T_MAX))) ) jpayne@68: static CYTHON_INLINE int __Pyx_is_valid_index(Py_ssize_t i, Py_ssize_t limit) { jpayne@68: return (size_t) i < (size_t) limit; jpayne@68: } jpayne@68: #if defined (__cplusplus) && __cplusplus >= 201103L jpayne@68: #include jpayne@68: #define __Pyx_sst_abs(value) std::abs(value) jpayne@68: #elif SIZEOF_INT >= SIZEOF_SIZE_T jpayne@68: #define __Pyx_sst_abs(value) abs(value) jpayne@68: #elif SIZEOF_LONG >= SIZEOF_SIZE_T jpayne@68: #define __Pyx_sst_abs(value) labs(value) jpayne@68: #elif defined (_MSC_VER) jpayne@68: #define __Pyx_sst_abs(value) ((Py_ssize_t)_abs64(value)) jpayne@68: #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L jpayne@68: #define __Pyx_sst_abs(value) llabs(value) jpayne@68: #elif defined (__GNUC__) jpayne@68: #define __Pyx_sst_abs(value) __builtin_llabs(value) jpayne@68: #else jpayne@68: #define __Pyx_sst_abs(value) ((value<0) ? -value : value) jpayne@68: #endif jpayne@68: static CYTHON_INLINE Py_ssize_t __Pyx_ssize_strlen(const char *s); jpayne@68: static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*); jpayne@68: static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyByteArray_FromString(const char*); jpayne@68: #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) jpayne@68: #define __Pyx_PyBytes_FromString PyBytes_FromString jpayne@68: #define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString jpayne@68: #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize jpayne@68: #else jpayne@68: #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString jpayne@68: #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize jpayne@68: #endif jpayne@68: #define __Pyx_PyBytes_AsWritableString(s) ((char*) PyBytes_AS_STRING(s)) jpayne@68: #define __Pyx_PyBytes_AsWritableSString(s) ((signed char*) PyBytes_AS_STRING(s)) jpayne@68: #define __Pyx_PyBytes_AsWritableUString(s) ((unsigned char*) PyBytes_AS_STRING(s)) jpayne@68: #define __Pyx_PyBytes_AsString(s) ((const char*) PyBytes_AS_STRING(s)) jpayne@68: #define __Pyx_PyBytes_AsSString(s) ((const signed char*) PyBytes_AS_STRING(s)) jpayne@68: #define __Pyx_PyBytes_AsUString(s) ((const unsigned char*) PyBytes_AS_STRING(s)) jpayne@68: #define __Pyx_PyObject_AsWritableString(s) ((char*)(__pyx_uintptr_t) __Pyx_PyObject_AsString(s)) jpayne@68: #define __Pyx_PyObject_AsWritableSString(s) ((signed char*)(__pyx_uintptr_t) __Pyx_PyObject_AsString(s)) jpayne@68: #define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*)(__pyx_uintptr_t) __Pyx_PyObject_AsString(s)) jpayne@68: #define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s)) jpayne@68: #define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s)) jpayne@68: #define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) jpayne@68: #define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) jpayne@68: #define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) jpayne@68: #define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s) jpayne@68: #define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s) jpayne@68: #define __Pyx_PyUnicode_FromOrdinal(o) PyUnicode_FromOrdinal((int)o) jpayne@68: #define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode jpayne@68: #define __Pyx_NewRef(obj) (Py_INCREF(obj), obj) jpayne@68: #define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None) jpayne@68: static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b); jpayne@68: static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); jpayne@68: static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject*); jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x); jpayne@68: #define __Pyx_PySequence_Tuple(obj)\ jpayne@68: (likely(PyTuple_CheckExact(obj)) ? __Pyx_NewRef(obj) : PySequence_Tuple(obj)) jpayne@68: static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); jpayne@68: static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); jpayne@68: static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject*); jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: #define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) jpayne@68: #else jpayne@68: #define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) jpayne@68: #endif jpayne@68: #define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: #define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x)) jpayne@68: #else jpayne@68: #define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x)) jpayne@68: #endif jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: #if PY_VERSION_HEX >= 0x030C00A7 jpayne@68: #ifndef _PyLong_SIGN_MASK jpayne@68: #define _PyLong_SIGN_MASK 3 jpayne@68: #endif jpayne@68: #ifndef _PyLong_NON_SIZE_BITS jpayne@68: #define _PyLong_NON_SIZE_BITS 3 jpayne@68: #endif jpayne@68: #define __Pyx_PyLong_Sign(x) (((PyLongObject*)x)->long_value.lv_tag & _PyLong_SIGN_MASK) jpayne@68: #define __Pyx_PyLong_IsNeg(x) ((__Pyx_PyLong_Sign(x) & 2) != 0) jpayne@68: #define __Pyx_PyLong_IsNonNeg(x) (!__Pyx_PyLong_IsNeg(x)) jpayne@68: #define __Pyx_PyLong_IsZero(x) (__Pyx_PyLong_Sign(x) & 1) jpayne@68: #define __Pyx_PyLong_IsPos(x) (__Pyx_PyLong_Sign(x) == 0) jpayne@68: #define __Pyx_PyLong_CompactValueUnsigned(x) (__Pyx_PyLong_Digits(x)[0]) jpayne@68: #define __Pyx_PyLong_DigitCount(x) ((Py_ssize_t) (((PyLongObject*)x)->long_value.lv_tag >> _PyLong_NON_SIZE_BITS)) jpayne@68: #define __Pyx_PyLong_SignedDigitCount(x)\ jpayne@68: ((1 - (Py_ssize_t) __Pyx_PyLong_Sign(x)) * __Pyx_PyLong_DigitCount(x)) jpayne@68: #if defined(PyUnstable_Long_IsCompact) && defined(PyUnstable_Long_CompactValue) jpayne@68: #define __Pyx_PyLong_IsCompact(x) PyUnstable_Long_IsCompact((PyLongObject*) x) jpayne@68: #define __Pyx_PyLong_CompactValue(x) PyUnstable_Long_CompactValue((PyLongObject*) x) jpayne@68: #else jpayne@68: #define __Pyx_PyLong_IsCompact(x) (((PyLongObject*)x)->long_value.lv_tag < (2 << _PyLong_NON_SIZE_BITS)) jpayne@68: #define __Pyx_PyLong_CompactValue(x) ((1 - (Py_ssize_t) __Pyx_PyLong_Sign(x)) * (Py_ssize_t) __Pyx_PyLong_Digits(x)[0]) jpayne@68: #endif jpayne@68: typedef Py_ssize_t __Pyx_compact_pylong; jpayne@68: typedef size_t __Pyx_compact_upylong; jpayne@68: #else jpayne@68: #define __Pyx_PyLong_IsNeg(x) (Py_SIZE(x) < 0) jpayne@68: #define __Pyx_PyLong_IsNonNeg(x) (Py_SIZE(x) >= 0) jpayne@68: #define __Pyx_PyLong_IsZero(x) (Py_SIZE(x) == 0) jpayne@68: #define __Pyx_PyLong_IsPos(x) (Py_SIZE(x) > 0) jpayne@68: #define __Pyx_PyLong_CompactValueUnsigned(x) ((Py_SIZE(x) == 0) ? 0 : __Pyx_PyLong_Digits(x)[0]) jpayne@68: #define __Pyx_PyLong_DigitCount(x) __Pyx_sst_abs(Py_SIZE(x)) jpayne@68: #define __Pyx_PyLong_SignedDigitCount(x) Py_SIZE(x) jpayne@68: #define __Pyx_PyLong_IsCompact(x) (Py_SIZE(x) == 0 || Py_SIZE(x) == 1 || Py_SIZE(x) == -1) jpayne@68: #define __Pyx_PyLong_CompactValue(x)\ jpayne@68: ((Py_SIZE(x) == 0) ? (sdigit) 0 : ((Py_SIZE(x) < 0) ? -(sdigit)__Pyx_PyLong_Digits(x)[0] : (sdigit)__Pyx_PyLong_Digits(x)[0])) jpayne@68: typedef sdigit __Pyx_compact_pylong; jpayne@68: typedef digit __Pyx_compact_upylong; jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030C00A5 jpayne@68: #define __Pyx_PyLong_Digits(x) (((PyLongObject*)x)->long_value.ob_digit) jpayne@68: #else jpayne@68: #define __Pyx_PyLong_Digits(x) (((PyLongObject*)x)->ob_digit) jpayne@68: #endif jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII jpayne@68: #include jpayne@68: static int __Pyx_sys_getdefaultencoding_not_ascii; jpayne@68: static int __Pyx_init_sys_getdefaultencoding_params(void) { jpayne@68: PyObject* sys; jpayne@68: PyObject* default_encoding = NULL; jpayne@68: PyObject* ascii_chars_u = NULL; jpayne@68: PyObject* ascii_chars_b = NULL; jpayne@68: const char* default_encoding_c; jpayne@68: sys = PyImport_ImportModule("sys"); jpayne@68: if (!sys) goto bad; jpayne@68: default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL); jpayne@68: Py_DECREF(sys); jpayne@68: if (!default_encoding) goto bad; jpayne@68: default_encoding_c = PyBytes_AsString(default_encoding); jpayne@68: if (!default_encoding_c) goto bad; jpayne@68: if (strcmp(default_encoding_c, "ascii") == 0) { jpayne@68: __Pyx_sys_getdefaultencoding_not_ascii = 0; jpayne@68: } else { jpayne@68: char ascii_chars[128]; jpayne@68: int c; jpayne@68: for (c = 0; c < 128; c++) { jpayne@68: ascii_chars[c] = (char) c; jpayne@68: } jpayne@68: __Pyx_sys_getdefaultencoding_not_ascii = 1; jpayne@68: ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL); jpayne@68: if (!ascii_chars_u) goto bad; jpayne@68: ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL); jpayne@68: if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) { jpayne@68: PyErr_Format( jpayne@68: PyExc_ValueError, jpayne@68: "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.", jpayne@68: default_encoding_c); jpayne@68: goto bad; jpayne@68: } jpayne@68: Py_DECREF(ascii_chars_u); jpayne@68: Py_DECREF(ascii_chars_b); jpayne@68: } jpayne@68: Py_DECREF(default_encoding); jpayne@68: return 0; jpayne@68: bad: jpayne@68: Py_XDECREF(default_encoding); jpayne@68: Py_XDECREF(ascii_chars_u); jpayne@68: Py_XDECREF(ascii_chars_b); jpayne@68: return -1; jpayne@68: } jpayne@68: #endif jpayne@68: #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3 jpayne@68: #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL) jpayne@68: #else jpayne@68: #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) jpayne@68: #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT jpayne@68: #include jpayne@68: static char* __PYX_DEFAULT_STRING_ENCODING; jpayne@68: static int __Pyx_init_sys_getdefaultencoding_params(void) { jpayne@68: PyObject* sys; jpayne@68: PyObject* default_encoding = NULL; jpayne@68: char* default_encoding_c; jpayne@68: sys = PyImport_ImportModule("sys"); jpayne@68: if (!sys) goto bad; jpayne@68: default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); jpayne@68: Py_DECREF(sys); jpayne@68: if (!default_encoding) goto bad; jpayne@68: default_encoding_c = PyBytes_AsString(default_encoding); jpayne@68: if (!default_encoding_c) goto bad; jpayne@68: __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c) + 1); jpayne@68: if (!__PYX_DEFAULT_STRING_ENCODING) goto bad; jpayne@68: strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c); jpayne@68: Py_DECREF(default_encoding); jpayne@68: return 0; jpayne@68: bad: jpayne@68: Py_XDECREF(default_encoding); jpayne@68: return -1; jpayne@68: } jpayne@68: #endif jpayne@68: #endif jpayne@68: jpayne@68: jpayne@68: /* Test for GCC > 2.95 */ jpayne@68: #if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))) jpayne@68: #define likely(x) __builtin_expect(!!(x), 1) jpayne@68: #define unlikely(x) __builtin_expect(!!(x), 0) jpayne@68: #else /* !__GNUC__ or GCC < 2.95 */ jpayne@68: #define likely(x) (x) jpayne@68: #define unlikely(x) (x) jpayne@68: #endif /* __GNUC__ */ jpayne@68: static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; } jpayne@68: jpayne@68: #if !CYTHON_USE_MODULE_STATE jpayne@68: static PyObject *__pyx_m = NULL; jpayne@68: #endif jpayne@68: static int __pyx_lineno; jpayne@68: static int __pyx_clineno = 0; jpayne@68: static const char * __pyx_cfilenm = __FILE__; jpayne@68: static const char *__pyx_filename; jpayne@68: jpayne@68: /* #### Code section: filename_table ### */ jpayne@68: jpayne@68: static const char *__pyx_f[] = { jpayne@68: "pysam/libchtslib.pyx", jpayne@68: "", jpayne@68: "contextvars.pxd", jpayne@68: "array.pxd", jpayne@68: "pysam/libchtslib.pxd", jpayne@68: "type.pxd", jpayne@68: "bool.pxd", jpayne@68: "complex.pxd", jpayne@68: }; jpayne@68: /* #### Code section: utility_code_proto_before_types ### */ jpayne@68: /* ForceInitThreads.proto */ jpayne@68: #ifndef __PYX_FORCE_INIT_THREADS jpayne@68: #define __PYX_FORCE_INIT_THREADS 0 jpayne@68: #endif jpayne@68: jpayne@68: /* NoFastGil.proto */ jpayne@68: #define __Pyx_PyGILState_Ensure PyGILState_Ensure jpayne@68: #define __Pyx_PyGILState_Release PyGILState_Release jpayne@68: #define __Pyx_FastGIL_Remember() jpayne@68: #define __Pyx_FastGIL_Forget() jpayne@68: #define __Pyx_FastGilFuncInit() jpayne@68: jpayne@68: /* #### Code section: numeric_typedefs ### */ jpayne@68: /* #### Code section: complex_type_declarations ### */ jpayne@68: /* #### Code section: type_declarations ### */ jpayne@68: jpayne@68: /*--- Type declarations ---*/ jpayne@68: #ifndef _ARRAYARRAY_H jpayne@68: struct arrayobject; jpayne@68: typedef struct arrayobject arrayobject; jpayne@68: #endif jpayne@68: struct __pyx_obj_5pysam_10libchtslib_HTSFile; jpayne@68: struct __pyx_obj_5pysam_10libchtslib_HFile; jpayne@68: struct __pyx_opt_args_7cpython_11contextvars_get_value; jpayne@68: struct __pyx_opt_args_7cpython_11contextvars_get_value_no_default; jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":112 jpayne@68: * jpayne@68: * jpayne@68: * cdef inline object get_value(var, default_value=None): # <<<<<<<<<<<<<< jpayne@68: * """Return a new reference to the value of the context variable, jpayne@68: * or the default value of the context variable, jpayne@68: */ jpayne@68: struct __pyx_opt_args_7cpython_11contextvars_get_value { jpayne@68: int __pyx_n; jpayne@68: PyObject *default_value; jpayne@68: }; jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":129 jpayne@68: * jpayne@68: * jpayne@68: * cdef inline object get_value_no_default(var, default_value=None): # <<<<<<<<<<<<<< jpayne@68: * """Return a new reference to the value of the context variable, jpayne@68: * or the provided default value if no such value was found. jpayne@68: */ jpayne@68: struct __pyx_opt_args_7cpython_11contextvars_get_value_no_default { jpayne@68: int __pyx_n; jpayne@68: PyObject *default_value; jpayne@68: }; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_parse_region; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_qualitystring_to_array; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_array_to_qualitystring; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_qualities_to_qualitystring; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_charptr_to_bytes; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str_w_len; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_force_str; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_force_bytes; jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_decode_bytes; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":8 jpayne@68: * from cpython cimport array as c_array jpayne@68: * jpayne@68: * cpdef parse_region(contig=*, start=*, stop=*, region=*, reference=*, end=*) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef int libc_whence_from_io(int whence) jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_parse_region { jpayne@68: int __pyx_n; jpayne@68: PyObject *contig; jpayne@68: PyObject *start; jpayne@68: PyObject *stop; jpayne@68: PyObject *region; jpayne@68: PyObject *reference; jpayne@68: PyObject *end; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":15 jpayne@68: * # Utility functions for quality string conversions jpayne@68: * jpayne@68: * cpdef c_array.array qualitystring_to_array(input_str, int offset=*) # <<<<<<<<<<<<<< jpayne@68: * cpdef array_to_qualitystring(c_array.array arr, int offset=*) jpayne@68: * cpdef qualities_to_qualitystring(qualities, int offset=*) jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_qualitystring_to_array { jpayne@68: int __pyx_n; jpayne@68: int offset; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":16 jpayne@68: * jpayne@68: * cpdef c_array.array qualitystring_to_array(input_str, int offset=*) jpayne@68: * cpdef array_to_qualitystring(c_array.array arr, int offset=*) # <<<<<<<<<<<<<< jpayne@68: * cpdef qualities_to_qualitystring(qualities, int offset=*) jpayne@68: * jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_array_to_qualitystring { jpayne@68: int __pyx_n; jpayne@68: int offset; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":17 jpayne@68: * cpdef c_array.array qualitystring_to_array(input_str, int offset=*) jpayne@68: * cpdef array_to_qualitystring(c_array.array arr, int offset=*) jpayne@68: * cpdef qualities_to_qualitystring(qualities, int offset=*) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * ######################################################################## jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_qualities_to_qualitystring { jpayne@68: int __pyx_n; jpayne@68: int offset; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":29 jpayne@68: * ## Python 3 compatibility functions jpayne@68: * ######################################################################## jpayne@68: * cdef charptr_to_str(const char *s, encoding=*, errors=*) # <<<<<<<<<<<<<< jpayne@68: * cdef bytes charptr_to_bytes(const char *s, encoding=*, errors=*) jpayne@68: * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*) jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str { jpayne@68: int __pyx_n; jpayne@68: PyObject *encoding; jpayne@68: PyObject *errors; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":30 jpayne@68: * ######################################################################## jpayne@68: * cdef charptr_to_str(const char *s, encoding=*, errors=*) jpayne@68: * cdef bytes charptr_to_bytes(const char *s, encoding=*, errors=*) # <<<<<<<<<<<<<< jpayne@68: * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*) jpayne@68: * cdef force_str(object s, encoding=*, errors=*) jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_charptr_to_bytes { jpayne@68: int __pyx_n; jpayne@68: PyObject *encoding; jpayne@68: PyObject *errors; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":31 jpayne@68: * cdef charptr_to_str(const char *s, encoding=*, errors=*) jpayne@68: * cdef bytes charptr_to_bytes(const char *s, encoding=*, errors=*) jpayne@68: * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*) # <<<<<<<<<<<<<< jpayne@68: * cdef force_str(object s, encoding=*, errors=*) jpayne@68: * cdef bytes force_bytes(object s, encoding=*, errors=*) jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str_w_len { jpayne@68: int __pyx_n; jpayne@68: PyObject *encoding; jpayne@68: PyObject *errors; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":32 jpayne@68: * cdef bytes charptr_to_bytes(const char *s, encoding=*, errors=*) jpayne@68: * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*) jpayne@68: * cdef force_str(object s, encoding=*, errors=*) # <<<<<<<<<<<<<< jpayne@68: * cdef bytes force_bytes(object s, encoding=*, errors=*) jpayne@68: * cdef decode_bytes(bytes s, encoding=*, errors=*) jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_force_str { jpayne@68: int __pyx_n; jpayne@68: PyObject *encoding; jpayne@68: PyObject *errors; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":33 jpayne@68: * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*) jpayne@68: * cdef force_str(object s, encoding=*, errors=*) jpayne@68: * cdef bytes force_bytes(object s, encoding=*, errors=*) # <<<<<<<<<<<<<< jpayne@68: * cdef decode_bytes(bytes s, encoding=*, errors=*) jpayne@68: * cdef bytes encode_filename(object filename) jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_force_bytes { jpayne@68: int __pyx_n; jpayne@68: PyObject *encoding; jpayne@68: PyObject *errors; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libcutils.pxd":34 jpayne@68: * cdef force_str(object s, encoding=*, errors=*) jpayne@68: * cdef bytes force_bytes(object s, encoding=*, errors=*) jpayne@68: * cdef decode_bytes(bytes s, encoding=*, errors=*) # <<<<<<<<<<<<<< jpayne@68: * cdef bytes encode_filename(object filename) jpayne@68: * cdef from_string_and_size(const char *s, size_t length) jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_9libcutils_decode_bytes { jpayne@68: int __pyx_n; jpayne@68: PyObject *encoding; jpayne@68: PyObject *errors; jpayne@68: }; jpayne@68: struct __pyx_opt_args_5pysam_10libchtslib_5HFile__open; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":81 jpayne@68: * return self.fp == NULL jpayne@68: * jpayne@68: * cdef _open(self, name, mode, closefd=True): # <<<<<<<<<<<<<< jpayne@68: * self.name = name jpayne@68: * self.mode = mode jpayne@68: */ jpayne@68: struct __pyx_opt_args_5pysam_10libchtslib_5HFile__open { jpayne@68: int __pyx_n; jpayne@68: PyObject *closefd; jpayne@68: }; jpayne@68: jpayne@68: /* "pysam/libchtslib.pxd":2706 jpayne@68: * jpayne@68: * jpayne@68: * cdef class HTSFile(object): # <<<<<<<<<<<<<< jpayne@68: * cdef htsFile *htsfile # pointer to htsFile structure jpayne@68: * cdef int64_t start_offset # BGZF offset of first record jpayne@68: */ jpayne@68: struct __pyx_obj_5pysam_10libchtslib_HTSFile { jpayne@68: PyObject_HEAD jpayne@68: struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile *__pyx_vtab; jpayne@68: htsFile *htsfile; jpayne@68: int64_t start_offset; jpayne@68: PyObject *filename; jpayne@68: PyObject *mode; jpayne@68: PyObject *threads; jpayne@68: PyObject *index_filename; jpayne@68: int is_stream; jpayne@68: int is_remote; jpayne@68: int duplicate_filehandle; jpayne@68: }; jpayne@68: jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":67 jpayne@68: * ######################################################################## jpayne@68: * jpayne@68: * cdef class HFile(object): # <<<<<<<<<<<<<< jpayne@68: * cdef hFILE *fp jpayne@68: * cdef readonly object name, mode jpayne@68: */ jpayne@68: struct __pyx_obj_5pysam_10libchtslib_HFile { jpayne@68: PyObject_HEAD jpayne@68: struct __pyx_vtabstruct_5pysam_10libchtslib_HFile *__pyx_vtab; 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(PyObject*) Py_TYPE(__pyx_tstate->current_exception) : (PyObject*) NULL) jpayne@68: #else jpayne@68: #define __Pyx_PyErr_Occurred() (__pyx_tstate->curexc_type != NULL) jpayne@68: #define __Pyx_PyErr_CurrentExceptionType() (__pyx_tstate->curexc_type) jpayne@68: #endif jpayne@68: #else jpayne@68: #define __Pyx_PyThreadState_declare jpayne@68: #define __Pyx_PyThreadState_assign jpayne@68: #define __Pyx_PyErr_Occurred() (PyErr_Occurred() != NULL) jpayne@68: #define __Pyx_PyErr_CurrentExceptionType() PyErr_Occurred() jpayne@68: #endif jpayne@68: jpayne@68: /* PyErrFetchRestore.proto */ jpayne@68: #if CYTHON_FAST_THREAD_STATE jpayne@68: #define __Pyx_PyErr_Clear() __Pyx_ErrRestore(NULL, NULL, NULL) jpayne@68: #define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb) jpayne@68: #define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb) jpayne@68: #define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb) jpayne@68: #define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb) jpayne@68: static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); jpayne@68: static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A6 jpayne@68: #define __Pyx_PyErr_SetNone(exc) (Py_INCREF(exc), __Pyx_ErrRestore((exc), NULL, NULL)) jpayne@68: #else jpayne@68: #define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc) jpayne@68: #endif jpayne@68: #else jpayne@68: #define __Pyx_PyErr_Clear() PyErr_Clear() jpayne@68: #define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc) jpayne@68: #define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb) jpayne@68: #define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb) jpayne@68: #define __Pyx_ErrRestoreInState(tstate, type, value, tb) PyErr_Restore(type, value, tb) jpayne@68: #define __Pyx_ErrFetchInState(tstate, type, value, tb) PyErr_Fetch(type, value, tb) jpayne@68: #define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb) jpayne@68: #define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb) jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectGetAttrStr.proto */ jpayne@68: #if CYTHON_USE_TYPE_SLOTS jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name); jpayne@68: #else jpayne@68: #define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n) jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectGetAttrStrNoError.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name); jpayne@68: jpayne@68: /* GetBuiltinName.proto */ jpayne@68: static PyObject *__Pyx_GetBuiltinName(PyObject *name); jpayne@68: jpayne@68: /* TupleAndListFromArray.proto */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyList_FromArray(PyObject *const *src, Py_ssize_t n); jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyTuple_FromArray(PyObject *const *src, Py_ssize_t n); jpayne@68: #endif jpayne@68: jpayne@68: /* IncludeStringH.proto */ jpayne@68: #include jpayne@68: jpayne@68: /* BytesEquals.proto */ jpayne@68: static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals); jpayne@68: jpayne@68: /* UnicodeEquals.proto */ jpayne@68: static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals); jpayne@68: jpayne@68: /* fastcall.proto */ jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: #define __Pyx_Arg_VARARGS(args, i) PySequence_GetItem(args, i) jpayne@68: #elif CYTHON_ASSUME_SAFE_MACROS jpayne@68: #define __Pyx_Arg_VARARGS(args, i) PyTuple_GET_ITEM(args, i) jpayne@68: #else jpayne@68: #define __Pyx_Arg_VARARGS(args, i) PyTuple_GetItem(args, i) jpayne@68: #endif jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: #define __Pyx_Arg_NewRef_VARARGS(arg) __Pyx_NewRef(arg) jpayne@68: #define __Pyx_Arg_XDECREF_VARARGS(arg) Py_XDECREF(arg) jpayne@68: #else jpayne@68: #define __Pyx_Arg_NewRef_VARARGS(arg) arg jpayne@68: #define __Pyx_Arg_XDECREF_VARARGS(arg) jpayne@68: #endif jpayne@68: #define __Pyx_NumKwargs_VARARGS(kwds) PyDict_Size(kwds) jpayne@68: #define __Pyx_KwValues_VARARGS(args, nargs) NULL jpayne@68: #define __Pyx_GetKwValue_VARARGS(kw, kwvalues, s) __Pyx_PyDict_GetItemStrWithError(kw, s) jpayne@68: #define __Pyx_KwargsAsDict_VARARGS(kw, kwvalues) PyDict_Copy(kw) jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: #define __Pyx_Arg_FASTCALL(args, i) args[i] jpayne@68: #define __Pyx_NumKwargs_FASTCALL(kwds) PyTuple_GET_SIZE(kwds) jpayne@68: #define __Pyx_KwValues_FASTCALL(args, nargs) ((args) + (nargs)) jpayne@68: static CYTHON_INLINE PyObject * __Pyx_GetKwValue_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues, PyObject *s); jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 jpayne@68: CYTHON_UNUSED static PyObject *__Pyx_KwargsAsDict_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues); jpayne@68: #else jpayne@68: #define __Pyx_KwargsAsDict_FASTCALL(kw, kwvalues) _PyStack_AsDict(kwvalues, kw) jpayne@68: #endif jpayne@68: #define __Pyx_Arg_NewRef_FASTCALL(arg) arg /* no-op, __Pyx_Arg_FASTCALL is direct and this needs jpayne@68: to have the same reference counting */ jpayne@68: #define __Pyx_Arg_XDECREF_FASTCALL(arg) jpayne@68: #else jpayne@68: #define __Pyx_Arg_FASTCALL __Pyx_Arg_VARARGS jpayne@68: #define __Pyx_NumKwargs_FASTCALL __Pyx_NumKwargs_VARARGS jpayne@68: #define __Pyx_KwValues_FASTCALL __Pyx_KwValues_VARARGS jpayne@68: #define __Pyx_GetKwValue_FASTCALL __Pyx_GetKwValue_VARARGS jpayne@68: #define __Pyx_KwargsAsDict_FASTCALL __Pyx_KwargsAsDict_VARARGS jpayne@68: #define __Pyx_Arg_NewRef_FASTCALL(arg) __Pyx_Arg_NewRef_VARARGS(arg) jpayne@68: #define __Pyx_Arg_XDECREF_FASTCALL(arg) __Pyx_Arg_XDECREF_VARARGS(arg) jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS jpayne@68: #define __Pyx_ArgsSlice_VARARGS(args, start, stop) __Pyx_PyTuple_FromArray(&__Pyx_Arg_VARARGS(args, start), stop - start) jpayne@68: #define __Pyx_ArgsSlice_FASTCALL(args, start, stop) __Pyx_PyTuple_FromArray(&__Pyx_Arg_FASTCALL(args, start), stop - start) jpayne@68: #else jpayne@68: #define __Pyx_ArgsSlice_VARARGS(args, start, stop) PyTuple_GetSlice(args, start, stop) jpayne@68: #define __Pyx_ArgsSlice_FASTCALL(args, start, stop) PyTuple_GetSlice(args, start, stop) jpayne@68: #endif jpayne@68: jpayne@68: /* Profile.proto */ jpayne@68: #ifndef CYTHON_PROFILE jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API || CYTHON_COMPILING_IN_PYPY jpayne@68: #define CYTHON_PROFILE 0 jpayne@68: #else jpayne@68: #define CYTHON_PROFILE 1 jpayne@68: #endif jpayne@68: #endif jpayne@68: #ifndef CYTHON_TRACE_NOGIL jpayne@68: #define CYTHON_TRACE_NOGIL 0 jpayne@68: #else jpayne@68: #if CYTHON_TRACE_NOGIL && !defined(CYTHON_TRACE) jpayne@68: #define CYTHON_TRACE 1 jpayne@68: #endif jpayne@68: #endif jpayne@68: #ifndef CYTHON_TRACE jpayne@68: #define CYTHON_TRACE 0 jpayne@68: #endif jpayne@68: #if CYTHON_TRACE jpayne@68: #undef CYTHON_PROFILE_REUSE_FRAME jpayne@68: #endif jpayne@68: #ifndef CYTHON_PROFILE_REUSE_FRAME jpayne@68: #define CYTHON_PROFILE_REUSE_FRAME 0 jpayne@68: #endif jpayne@68: #if CYTHON_PROFILE || CYTHON_TRACE jpayne@68: #include "compile.h" jpayne@68: #include "frameobject.h" jpayne@68: #include "traceback.h" jpayne@68: #if PY_VERSION_HEX >= 0x030b00a6 jpayne@68: #ifndef Py_BUILD_CORE jpayne@68: #define Py_BUILD_CORE 1 jpayne@68: #endif jpayne@68: #include "internal/pycore_frame.h" jpayne@68: #endif jpayne@68: #if CYTHON_PROFILE_REUSE_FRAME jpayne@68: #define CYTHON_FRAME_MODIFIER static jpayne@68: #define CYTHON_FRAME_DEL(frame) jpayne@68: #else jpayne@68: #define CYTHON_FRAME_MODIFIER jpayne@68: #define CYTHON_FRAME_DEL(frame) Py_CLEAR(frame) jpayne@68: #endif jpayne@68: #define __Pyx_TraceDeclarations\ jpayne@68: static PyCodeObject *__pyx_frame_code = NULL;\ jpayne@68: CYTHON_FRAME_MODIFIER PyFrameObject *__pyx_frame = NULL;\ jpayne@68: int __Pyx_use_tracing = 0; jpayne@68: #define __Pyx_TraceFrameInit(codeobj)\ jpayne@68: if (codeobj) __pyx_frame_code = (PyCodeObject*) codeobj; jpayne@68: #if PY_VERSION_HEX >= 0x030b00a2 jpayne@68: #if PY_VERSION_HEX >= 0x030C00b1 jpayne@68: #define __Pyx_IsTracing(tstate, check_tracing, check_funcs)\ jpayne@68: ((!(check_tracing) || !(tstate)->tracing) &&\ jpayne@68: (!(check_funcs) || (tstate)->c_profilefunc || (CYTHON_TRACE && (tstate)->c_tracefunc))) jpayne@68: #else jpayne@68: #define __Pyx_IsTracing(tstate, check_tracing, check_funcs)\ jpayne@68: (unlikely((tstate)->cframe->use_tracing) &&\ jpayne@68: (!(check_tracing) || !(tstate)->tracing) &&\ jpayne@68: (!(check_funcs) || (tstate)->c_profilefunc || (CYTHON_TRACE && (tstate)->c_tracefunc))) jpayne@68: #endif jpayne@68: #define __Pyx_EnterTracing(tstate) PyThreadState_EnterTracing(tstate) jpayne@68: #define __Pyx_LeaveTracing(tstate) PyThreadState_LeaveTracing(tstate) jpayne@68: #elif PY_VERSION_HEX >= 0x030a00b1 jpayne@68: #define __Pyx_IsTracing(tstate, check_tracing, check_funcs)\ jpayne@68: (unlikely((tstate)->cframe->use_tracing) &&\ jpayne@68: (!(check_tracing) || !(tstate)->tracing) &&\ jpayne@68: (!(check_funcs) || (tstate)->c_profilefunc || (CYTHON_TRACE && (tstate)->c_tracefunc))) jpayne@68: #define __Pyx_EnterTracing(tstate)\ jpayne@68: do { tstate->tracing++; tstate->cframe->use_tracing = 0; } while (0) jpayne@68: #define __Pyx_LeaveTracing(tstate)\ jpayne@68: do {\ jpayne@68: tstate->tracing--;\ jpayne@68: tstate->cframe->use_tracing = ((CYTHON_TRACE && tstate->c_tracefunc != NULL)\ jpayne@68: || tstate->c_profilefunc != NULL);\ jpayne@68: } while (0) jpayne@68: #else jpayne@68: #define __Pyx_IsTracing(tstate, check_tracing, check_funcs)\ jpayne@68: (unlikely((tstate)->use_tracing) &&\ jpayne@68: (!(check_tracing) || !(tstate)->tracing) &&\ jpayne@68: (!(check_funcs) || (tstate)->c_profilefunc || (CYTHON_TRACE && (tstate)->c_tracefunc))) jpayne@68: #define __Pyx_EnterTracing(tstate)\ jpayne@68: do { tstate->tracing++; tstate->use_tracing = 0; } while (0) jpayne@68: #define __Pyx_LeaveTracing(tstate)\ jpayne@68: do {\ jpayne@68: tstate->tracing--;\ jpayne@68: tstate->use_tracing = ((CYTHON_TRACE && tstate->c_tracefunc != NULL)\ jpayne@68: || tstate->c_profilefunc != NULL);\ jpayne@68: } while (0) jpayne@68: #endif jpayne@68: #ifdef WITH_THREAD jpayne@68: #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\ jpayne@68: if (nogil) {\ jpayne@68: if (CYTHON_TRACE_NOGIL) {\ jpayne@68: PyThreadState *tstate;\ jpayne@68: PyGILState_STATE state = PyGILState_Ensure();\ jpayne@68: tstate = __Pyx_PyThreadState_Current;\ jpayne@68: if (__Pyx_IsTracing(tstate, 1, 1)) {\ jpayne@68: __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, tstate, funcname, srcfile, firstlineno);\ jpayne@68: }\ jpayne@68: PyGILState_Release(state);\ jpayne@68: if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ jpayne@68: }\ jpayne@68: } else {\ jpayne@68: PyThreadState* tstate = PyThreadState_GET();\ jpayne@68: if (__Pyx_IsTracing(tstate, 1, 1)) {\ jpayne@68: __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, tstate, funcname, srcfile, firstlineno);\ jpayne@68: if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ jpayne@68: }\ jpayne@68: } jpayne@68: #else jpayne@68: #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\ jpayne@68: { PyThreadState* tstate = PyThreadState_GET();\ jpayne@68: if (__Pyx_IsTracing(tstate, 1, 1)) {\ jpayne@68: __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, tstate, funcname, srcfile, firstlineno);\ jpayne@68: if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ jpayne@68: }\ jpayne@68: } jpayne@68: #endif jpayne@68: #define __Pyx_TraceException()\ jpayne@68: if (likely(!__Pyx_use_tracing)); else {\ jpayne@68: PyThreadState* tstate = __Pyx_PyThreadState_Current;\ jpayne@68: if (__Pyx_IsTracing(tstate, 0, 1)) {\ jpayne@68: __Pyx_EnterTracing(tstate);\ jpayne@68: PyObject *exc_info = __Pyx_GetExceptionTuple(tstate);\ jpayne@68: if (exc_info) {\ jpayne@68: if (CYTHON_TRACE && tstate->c_tracefunc)\ jpayne@68: tstate->c_tracefunc(\ jpayne@68: tstate->c_traceobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\ jpayne@68: tstate->c_profilefunc(\ jpayne@68: tstate->c_profileobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\ jpayne@68: Py_DECREF(exc_info);\ jpayne@68: }\ jpayne@68: __Pyx_LeaveTracing(tstate);\ jpayne@68: }\ jpayne@68: } jpayne@68: static void __Pyx_call_return_trace_func(PyThreadState *tstate, PyFrameObject *frame, PyObject *result) { jpayne@68: PyObject *type, *value, *traceback; jpayne@68: __Pyx_ErrFetchInState(tstate, &type, &value, &traceback); jpayne@68: __Pyx_EnterTracing(tstate); jpayne@68: if (CYTHON_TRACE && tstate->c_tracefunc) jpayne@68: tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_RETURN, result); jpayne@68: if (tstate->c_profilefunc) jpayne@68: tstate->c_profilefunc(tstate->c_profileobj, frame, PyTrace_RETURN, result); jpayne@68: CYTHON_FRAME_DEL(frame); jpayne@68: __Pyx_LeaveTracing(tstate); jpayne@68: __Pyx_ErrRestoreInState(tstate, type, value, traceback); jpayne@68: } jpayne@68: #ifdef WITH_THREAD jpayne@68: #define __Pyx_TraceReturn(result, nogil)\ jpayne@68: if (likely(!__Pyx_use_tracing)); else {\ jpayne@68: if (nogil) {\ jpayne@68: if (CYTHON_TRACE_NOGIL) {\ jpayne@68: PyThreadState *tstate;\ jpayne@68: PyGILState_STATE state = PyGILState_Ensure();\ jpayne@68: tstate = __Pyx_PyThreadState_Current;\ jpayne@68: if (__Pyx_IsTracing(tstate, 0, 0)) {\ jpayne@68: __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ jpayne@68: }\ jpayne@68: PyGILState_Release(state);\ jpayne@68: }\ jpayne@68: } else {\ jpayne@68: PyThreadState* tstate = __Pyx_PyThreadState_Current;\ jpayne@68: if (__Pyx_IsTracing(tstate, 0, 0)) {\ jpayne@68: __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ jpayne@68: }\ jpayne@68: }\ jpayne@68: } jpayne@68: #else jpayne@68: #define __Pyx_TraceReturn(result, nogil)\ jpayne@68: if (likely(!__Pyx_use_tracing)); else {\ jpayne@68: PyThreadState* tstate = __Pyx_PyThreadState_Current;\ jpayne@68: if (__Pyx_IsTracing(tstate, 0, 0)) {\ jpayne@68: __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ jpayne@68: }\ jpayne@68: } jpayne@68: #endif jpayne@68: static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno); jpayne@68: static int __Pyx_TraceSetupAndCall(PyCodeObject** code, PyFrameObject** frame, PyThreadState* tstate, const char *funcname, const char *srcfile, int firstlineno); jpayne@68: #else jpayne@68: #define __Pyx_TraceDeclarations jpayne@68: #define __Pyx_TraceFrameInit(codeobj) jpayne@68: #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if ((1)); else goto_error; jpayne@68: #define __Pyx_TraceException() jpayne@68: #define __Pyx_TraceReturn(result, nogil) jpayne@68: #endif jpayne@68: #if CYTHON_TRACE jpayne@68: static int __Pyx_call_line_trace_func(PyThreadState *tstate, PyFrameObject *frame, int lineno) { jpayne@68: int ret; jpayne@68: PyObject *type, *value, *traceback; jpayne@68: __Pyx_ErrFetchInState(tstate, &type, &value, &traceback); jpayne@68: __Pyx_PyFrame_SetLineNumber(frame, lineno); jpayne@68: __Pyx_EnterTracing(tstate); jpayne@68: ret = tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_LINE, NULL); jpayne@68: __Pyx_LeaveTracing(tstate); jpayne@68: if (likely(!ret)) { jpayne@68: __Pyx_ErrRestoreInState(tstate, type, value, traceback); jpayne@68: } else { jpayne@68: Py_XDECREF(type); jpayne@68: Py_XDECREF(value); jpayne@68: Py_XDECREF(traceback); jpayne@68: } jpayne@68: return ret; jpayne@68: } jpayne@68: #ifdef WITH_THREAD jpayne@68: #define __Pyx_TraceLine(lineno, nogil, goto_error)\ jpayne@68: if (likely(!__Pyx_use_tracing)); else {\ jpayne@68: if (nogil) {\ jpayne@68: if (CYTHON_TRACE_NOGIL) {\ jpayne@68: int ret = 0;\ jpayne@68: PyThreadState *tstate;\ jpayne@68: PyGILState_STATE state = __Pyx_PyGILState_Ensure();\ jpayne@68: tstate = __Pyx_PyThreadState_Current;\ jpayne@68: if (__Pyx_IsTracing(tstate, 0, 0) && tstate->c_tracefunc && __pyx_frame->f_trace) {\ jpayne@68: ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ jpayne@68: }\ jpayne@68: __Pyx_PyGILState_Release(state);\ jpayne@68: if (unlikely(ret)) goto_error;\ jpayne@68: }\ jpayne@68: } else {\ jpayne@68: PyThreadState* tstate = __Pyx_PyThreadState_Current;\ jpayne@68: if (__Pyx_IsTracing(tstate, 0, 0) && tstate->c_tracefunc && __pyx_frame->f_trace) {\ jpayne@68: int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ jpayne@68: if (unlikely(ret)) goto_error;\ jpayne@68: }\ jpayne@68: }\ jpayne@68: } jpayne@68: #else jpayne@68: #define __Pyx_TraceLine(lineno, nogil, goto_error)\ jpayne@68: if (likely(!__Pyx_use_tracing)); else {\ jpayne@68: PyThreadState* tstate = __Pyx_PyThreadState_Current;\ jpayne@68: if (__Pyx_IsTracing(tstate, 0, 0) && tstate->c_tracefunc && __pyx_frame->f_trace) {\ jpayne@68: int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ jpayne@68: if (unlikely(ret)) goto_error;\ jpayne@68: }\ jpayne@68: } jpayne@68: #endif jpayne@68: #else jpayne@68: #define __Pyx_TraceLine(lineno, nogil, goto_error) if ((1)); else goto_error; jpayne@68: #endif jpayne@68: jpayne@68: /* RaiseDoubleKeywords.proto */ jpayne@68: static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); jpayne@68: jpayne@68: /* ParseKeywords.proto */ jpayne@68: static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject *const *kwvalues, jpayne@68: PyObject **argnames[], jpayne@68: PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, jpayne@68: const char* function_name); jpayne@68: jpayne@68: /* RaiseArgTupleInvalid.proto */ jpayne@68: static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, jpayne@68: Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); jpayne@68: jpayne@68: /* PyFunctionFastCall.proto */ jpayne@68: #if CYTHON_FAST_PYCALL jpayne@68: #if !CYTHON_VECTORCALL jpayne@68: #define __Pyx_PyFunction_FastCall(func, args, nargs)\ jpayne@68: __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL) jpayne@68: static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs); jpayne@68: #endif jpayne@68: #define __Pyx_BUILD_ASSERT_EXPR(cond)\ jpayne@68: (sizeof(char [1 - 2*!(cond)]) - 1) jpayne@68: #ifndef Py_MEMBER_SIZE jpayne@68: #define Py_MEMBER_SIZE(type, member) sizeof(((type *)0)->member) jpayne@68: #endif jpayne@68: #if !CYTHON_VECTORCALL jpayne@68: #if PY_VERSION_HEX >= 0x03080000 jpayne@68: #include "frameobject.h" jpayne@68: #if PY_VERSION_HEX >= 0x030b00a6 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #ifndef Py_BUILD_CORE jpayne@68: #define Py_BUILD_CORE 1 jpayne@68: #endif jpayne@68: #include "internal/pycore_frame.h" jpayne@68: #endif jpayne@68: #define __Pxy_PyFrame_Initialize_Offsets() jpayne@68: #define __Pyx_PyFrame_GetLocalsplus(frame) ((frame)->f_localsplus) jpayne@68: #else jpayne@68: static size_t __pyx_pyframe_localsplus_offset = 0; jpayne@68: #include "frameobject.h" jpayne@68: #define __Pxy_PyFrame_Initialize_Offsets()\ jpayne@68: ((void)__Pyx_BUILD_ASSERT_EXPR(sizeof(PyFrameObject) == offsetof(PyFrameObject, f_localsplus) + Py_MEMBER_SIZE(PyFrameObject, f_localsplus)),\ jpayne@68: (void)(__pyx_pyframe_localsplus_offset = ((size_t)PyFrame_Type.tp_basicsize) - Py_MEMBER_SIZE(PyFrameObject, f_localsplus))) jpayne@68: #define __Pyx_PyFrame_GetLocalsplus(frame)\ jpayne@68: (assert(__pyx_pyframe_localsplus_offset), (PyObject **)(((char *)(frame)) + __pyx_pyframe_localsplus_offset)) jpayne@68: #endif jpayne@68: #endif jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectCall.proto */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw); jpayne@68: #else jpayne@68: #define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw) jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectCallMethO.proto */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg); jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectFastCall.proto */ jpayne@68: #define __Pyx_PyObject_FastCall(func, args, nargs) __Pyx_PyObject_FastCallDict(func, args, (size_t)(nargs), NULL) jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_FastCallDict(PyObject *func, PyObject **args, size_t nargs, PyObject *kwargs); jpayne@68: jpayne@68: /* WriteUnraisableException.proto */ jpayne@68: static void __Pyx_WriteUnraisable(const char *name, int clineno, jpayne@68: int lineno, const char *filename, jpayne@68: int full_traceback, int nogil); jpayne@68: jpayne@68: /* RaiseException.proto */ jpayne@68: static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); jpayne@68: jpayne@68: /* KeywordStringCheck.proto */ jpayne@68: static int __Pyx_CheckKeywordStrings(PyObject *kw, const char* function_name, int kw_allowed); jpayne@68: jpayne@68: /* PySequenceContains.proto */ jpayne@68: static CYTHON_INLINE int __Pyx_PySequence_ContainsTF(PyObject* item, PyObject* seq, int eq) { jpayne@68: int result = PySequence_Contains(seq, item); jpayne@68: return unlikely(result < 0) ? result : (result == (eq == Py_EQ)); jpayne@68: } jpayne@68: jpayne@68: /* ListAppend.proto */ jpayne@68: #if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS jpayne@68: static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) { jpayne@68: PyListObject* L = (PyListObject*) list; jpayne@68: Py_ssize_t len = Py_SIZE(list); jpayne@68: if (likely(L->allocated > len) & likely(len > (L->allocated >> 1))) { jpayne@68: Py_INCREF(x); jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 jpayne@68: L->ob_item[len] = x; jpayne@68: #else jpayne@68: PyList_SET_ITEM(list, len, x); jpayne@68: #endif jpayne@68: __Pyx_SET_SIZE(list, len + 1); jpayne@68: return 0; jpayne@68: } jpayne@68: return PyList_Append(list, x); jpayne@68: } jpayne@68: #else jpayne@68: #define __Pyx_PyList_Append(L,x) PyList_Append(L,x) jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectCall2Args.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2); jpayne@68: jpayne@68: /* PyObjectCallOneArg.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg); jpayne@68: jpayne@68: /* PyObjectGetMethod.proto */ jpayne@68: static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method); jpayne@68: jpayne@68: /* PyObjectCallMethod1.proto */ jpayne@68: static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg); jpayne@68: jpayne@68: /* StringJoin.proto */ jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: #define __Pyx_PyString_Join __Pyx_PyBytes_Join jpayne@68: #define __Pyx_PyBaseString_Join(s, v) (PyUnicode_CheckExact(s) ? PyUnicode_Join(s, v) : __Pyx_PyBytes_Join(s, v)) jpayne@68: #else jpayne@68: #define __Pyx_PyString_Join PyUnicode_Join jpayne@68: #define __Pyx_PyBaseString_Join PyUnicode_Join jpayne@68: #endif jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyBytes_Join(PyObject* sep, PyObject* values); jpayne@68: jpayne@68: /* PyObjectCallNoArg.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func); jpayne@68: jpayne@68: /* ArgTypeTest.proto */ jpayne@68: #define __Pyx_ArgTypeTest(obj, type, none_allowed, name, exact)\ jpayne@68: ((likely(__Pyx_IS_TYPE(obj, type) | (none_allowed && (obj == Py_None)))) ? 1 :\ jpayne@68: __Pyx__ArgTypeTest(obj, type, name, exact)) jpayne@68: static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact); jpayne@68: jpayne@68: /* PyObjectSetAttrStr.proto */ jpayne@68: #if CYTHON_USE_TYPE_SLOTS jpayne@68: #define __Pyx_PyObject_DelAttrStr(o,n) __Pyx_PyObject_SetAttrStr(o, n, NULL) jpayne@68: static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value); jpayne@68: #else jpayne@68: #define __Pyx_PyObject_DelAttrStr(o,n) PyObject_DelAttr(o,n) jpayne@68: #define __Pyx_PyObject_SetAttrStr(o,n,v) PyObject_SetAttr(o,n,v) jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectFormatSimple.proto */ jpayne@68: #if CYTHON_COMPILING_IN_PYPY jpayne@68: #define __Pyx_PyObject_FormatSimple(s, f) (\ jpayne@68: likely(PyUnicode_CheckExact(s)) ? (Py_INCREF(s), s) :\ jpayne@68: PyObject_Format(s, f)) jpayne@68: #elif PY_MAJOR_VERSION < 3 jpayne@68: #define __Pyx_PyObject_FormatSimple(s, f) (\ jpayne@68: likely(PyUnicode_CheckExact(s)) ? (Py_INCREF(s), s) :\ jpayne@68: likely(PyString_CheckExact(s)) ? PyUnicode_FromEncodedObject(s, NULL, "strict") :\ jpayne@68: PyObject_Format(s, f)) jpayne@68: #elif CYTHON_USE_TYPE_SLOTS jpayne@68: #define __Pyx_PyObject_FormatSimple(s, f) (\ jpayne@68: likely(PyUnicode_CheckExact(s)) ? (Py_INCREF(s), s) :\ jpayne@68: likely(PyLong_CheckExact(s)) ? PyLong_Type.tp_repr(s) :\ jpayne@68: likely(PyFloat_CheckExact(s)) ? PyFloat_Type.tp_repr(s) :\ jpayne@68: PyObject_Format(s, f)) jpayne@68: #else jpayne@68: #define __Pyx_PyObject_FormatSimple(s, f) (\ jpayne@68: likely(PyUnicode_CheckExact(s)) ? (Py_INCREF(s), s) :\ jpayne@68: PyObject_Format(s, f)) jpayne@68: #endif jpayne@68: jpayne@68: /* JoinPyUnicode.proto */ jpayne@68: static PyObject* __Pyx_PyUnicode_Join(PyObject* value_tuple, Py_ssize_t value_count, Py_ssize_t result_ulength, jpayne@68: Py_UCS4 max_char); jpayne@68: jpayne@68: /* PyDictVersioning.proto */ jpayne@68: #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS jpayne@68: #define __PYX_DICT_VERSION_INIT ((PY_UINT64_T) -1) jpayne@68: #define __PYX_GET_DICT_VERSION(dict) (((PyDictObject*)(dict))->ma_version_tag) jpayne@68: #define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)\ jpayne@68: (version_var) = __PYX_GET_DICT_VERSION(dict);\ jpayne@68: (cache_var) = (value); jpayne@68: #define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) {\ jpayne@68: static PY_UINT64_T __pyx_dict_version = 0;\ jpayne@68: static PyObject *__pyx_dict_cached_value = NULL;\ jpayne@68: if (likely(__PYX_GET_DICT_VERSION(DICT) == __pyx_dict_version)) {\ jpayne@68: (VAR) = __pyx_dict_cached_value;\ jpayne@68: } else {\ jpayne@68: (VAR) = __pyx_dict_cached_value = (LOOKUP);\ jpayne@68: __pyx_dict_version = __PYX_GET_DICT_VERSION(DICT);\ jpayne@68: }\ jpayne@68: } jpayne@68: static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj); jpayne@68: static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj); jpayne@68: static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version); jpayne@68: #else jpayne@68: #define __PYX_GET_DICT_VERSION(dict) (0) jpayne@68: #define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var) jpayne@68: #define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) (VAR) = (LOOKUP); jpayne@68: #endif jpayne@68: jpayne@68: /* GetModuleGlobalName.proto */ jpayne@68: #if CYTHON_USE_DICT_VERSIONS jpayne@68: #define __Pyx_GetModuleGlobalName(var, name) do {\ jpayne@68: static PY_UINT64_T __pyx_dict_version = 0;\ jpayne@68: static PyObject *__pyx_dict_cached_value = NULL;\ jpayne@68: (var) = (likely(__pyx_dict_version == __PYX_GET_DICT_VERSION(__pyx_d))) ?\ jpayne@68: (likely(__pyx_dict_cached_value) ? __Pyx_NewRef(__pyx_dict_cached_value) : __Pyx_GetBuiltinName(name)) :\ jpayne@68: __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\ jpayne@68: } while(0) jpayne@68: #define __Pyx_GetModuleGlobalNameUncached(var, name) do {\ jpayne@68: PY_UINT64_T __pyx_dict_version;\ jpayne@68: PyObject *__pyx_dict_cached_value;\ jpayne@68: (var) = __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\ jpayne@68: } while(0) jpayne@68: static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value); jpayne@68: #else jpayne@68: #define __Pyx_GetModuleGlobalName(var, name) (var) = __Pyx__GetModuleGlobalName(name) jpayne@68: #define __Pyx_GetModuleGlobalNameUncached(var, name) (var) = __Pyx__GetModuleGlobalName(name) jpayne@68: static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name); jpayne@68: #endif jpayne@68: jpayne@68: /* GetItemInt.proto */ jpayne@68: #define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ jpayne@68: (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ jpayne@68: __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\ jpayne@68: (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\ jpayne@68: __Pyx_GetItemInt_Generic(o, to_py_func(i)))) jpayne@68: #define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ jpayne@68: (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ jpayne@68: __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ jpayne@68: (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL)) jpayne@68: static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, jpayne@68: int wraparound, int boundscheck); jpayne@68: #define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ jpayne@68: (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ jpayne@68: __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ jpayne@68: (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL)) jpayne@68: static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, jpayne@68: int wraparound, int boundscheck); jpayne@68: static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j); jpayne@68: static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, jpayne@68: int is_list, int wraparound, int boundscheck); jpayne@68: jpayne@68: /* ObjectGetItem.proto */ jpayne@68: #if CYTHON_USE_TYPE_SLOTS jpayne@68: static CYTHON_INLINE PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject *key); jpayne@68: #else jpayne@68: #define __Pyx_PyObject_GetItem(obj, key) PyObject_GetItem(obj, key) jpayne@68: #endif jpayne@68: jpayne@68: /* GetException.proto */ jpayne@68: #if CYTHON_FAST_THREAD_STATE jpayne@68: #define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb) jpayne@68: static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); jpayne@68: #else jpayne@68: static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb); jpayne@68: #endif jpayne@68: jpayne@68: /* SwapException.proto */ jpayne@68: #if CYTHON_FAST_THREAD_STATE jpayne@68: #define __Pyx_ExceptionSwap(type, value, tb) __Pyx__ExceptionSwap(__pyx_tstate, type, value, tb) jpayne@68: static CYTHON_INLINE void __Pyx__ExceptionSwap(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); jpayne@68: #else jpayne@68: static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb); jpayne@68: #endif jpayne@68: jpayne@68: /* GetTopmostException.proto */ jpayne@68: #if CYTHON_USE_EXC_INFO_STACK && CYTHON_FAST_THREAD_STATE jpayne@68: static _PyErr_StackItem * __Pyx_PyErr_GetTopmostException(PyThreadState *tstate); jpayne@68: #endif jpayne@68: jpayne@68: /* SaveResetException.proto */ jpayne@68: #if CYTHON_FAST_THREAD_STATE jpayne@68: #define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb) jpayne@68: static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); jpayne@68: #define __Pyx_ExceptionReset(type, value, tb) __Pyx__ExceptionReset(__pyx_tstate, type, value, tb) jpayne@68: static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); jpayne@68: #else jpayne@68: #define __Pyx_ExceptionSave(type, value, tb) PyErr_GetExcInfo(type, value, tb) jpayne@68: #define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb) jpayne@68: #endif jpayne@68: jpayne@68: /* PyIntBinop.proto */ jpayne@68: #if !CYTHON_COMPILING_IN_PYPY jpayne@68: static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check); jpayne@68: #else jpayne@68: #define __Pyx_PyInt_SubtractObjC(op1, op2, intval, inplace, zerodivision_check)\ jpayne@68: (inplace ? PyNumber_InPlaceSubtract(op1, op2) : PyNumber_Subtract(op1, op2)) jpayne@68: #endif jpayne@68: jpayne@68: /* PyObject_Unicode.proto */ jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: #define __Pyx_PyObject_Unicode(obj)\ jpayne@68: (likely(PyUnicode_CheckExact(obj)) ? __Pyx_NewRef(obj) : PyObject_Str(obj)) jpayne@68: #else jpayne@68: #define __Pyx_PyObject_Unicode(obj)\ jpayne@68: (likely(PyUnicode_CheckExact(obj)) ? __Pyx_NewRef(obj) : PyObject_Unicode(obj)) jpayne@68: #endif jpayne@68: jpayne@68: /* RaiseTooManyValuesToUnpack.proto */ jpayne@68: static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); jpayne@68: jpayne@68: /* RaiseNeedMoreValuesToUnpack.proto */ jpayne@68: static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); jpayne@68: jpayne@68: /* IterFinish.proto */ jpayne@68: static CYTHON_INLINE int __Pyx_IterFinish(void); jpayne@68: jpayne@68: /* UnpackItemEndCheck.proto */ jpayne@68: static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected); jpayne@68: jpayne@68: /* PyIntCompare.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_NeObjC(PyObject *op1, PyObject *op2, long intval, long inplace); jpayne@68: jpayne@68: /* IncludeStructmemberH.proto */ jpayne@68: #include jpayne@68: jpayne@68: /* FixUpExtensionType.proto */ jpayne@68: #if CYTHON_USE_TYPE_SPECS jpayne@68: static int __Pyx_fix_up_extension_type_from_spec(PyType_Spec *spec, PyTypeObject *type); jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectCallMethod0.proto */ jpayne@68: static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name); jpayne@68: jpayne@68: /* ValidateBasesTuple.proto */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON || CYTHON_COMPILING_IN_LIMITED_API || CYTHON_USE_TYPE_SPECS jpayne@68: static int __Pyx_validate_bases_tuple(const char *type_name, Py_ssize_t dictoffset, PyObject *bases); jpayne@68: #endif jpayne@68: jpayne@68: /* PyType_Ready.proto */ jpayne@68: CYTHON_UNUSED static int __Pyx_PyType_Ready(PyTypeObject *t); jpayne@68: jpayne@68: /* PyObject_GenericGetAttrNoDict.proto */ jpayne@68: #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name); jpayne@68: #else jpayne@68: #define __Pyx_PyObject_GenericGetAttrNoDict PyObject_GenericGetAttr jpayne@68: #endif jpayne@68: jpayne@68: /* PyObject_GenericGetAttr.proto */ jpayne@68: #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 jpayne@68: static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name); jpayne@68: #else jpayne@68: #define __Pyx_PyObject_GenericGetAttr PyObject_GenericGetAttr jpayne@68: #endif jpayne@68: jpayne@68: /* SetVTable.proto */ jpayne@68: static int __Pyx_SetVtable(PyTypeObject* typeptr , void* vtable); jpayne@68: jpayne@68: /* GetVTable.proto */ jpayne@68: static void* __Pyx_GetVtable(PyTypeObject *type); jpayne@68: jpayne@68: /* MergeVTables.proto */ jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static int __Pyx_MergeVtables(PyTypeObject *type); jpayne@68: #endif jpayne@68: jpayne@68: /* SetupReduce.proto */ jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static int __Pyx_setup_reduce(PyObject* type_obj); jpayne@68: #endif jpayne@68: jpayne@68: /* TypeImport.proto */ jpayne@68: #ifndef __PYX_HAVE_RT_ImportType_proto_3_0_11 jpayne@68: #define __PYX_HAVE_RT_ImportType_proto_3_0_11 jpayne@68: #if defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L jpayne@68: #include jpayne@68: #endif jpayne@68: #if (defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L) || __cplusplus >= 201103L jpayne@68: #define __PYX_GET_STRUCT_ALIGNMENT_3_0_11(s) alignof(s) jpayne@68: #else jpayne@68: #define __PYX_GET_STRUCT_ALIGNMENT_3_0_11(s) sizeof(void*) jpayne@68: #endif jpayne@68: enum __Pyx_ImportType_CheckSize_3_0_11 { jpayne@68: __Pyx_ImportType_CheckSize_Error_3_0_11 = 0, jpayne@68: __Pyx_ImportType_CheckSize_Warn_3_0_11 = 1, jpayne@68: __Pyx_ImportType_CheckSize_Ignore_3_0_11 = 2 jpayne@68: }; jpayne@68: static PyTypeObject *__Pyx_ImportType_3_0_11(PyObject* module, const char *module_name, const char *class_name, size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_0_11 check_size); jpayne@68: #endif jpayne@68: jpayne@68: /* Import.proto */ jpayne@68: static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); jpayne@68: jpayne@68: /* ImportDottedModule.proto */ jpayne@68: static PyObject *__Pyx_ImportDottedModule(PyObject *name, PyObject *parts_tuple); jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: static PyObject *__Pyx_ImportDottedModule_WalkParts(PyObject *module, PyObject *name, PyObject *parts_tuple); jpayne@68: #endif jpayne@68: jpayne@68: /* ImportFrom.proto */ jpayne@68: static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name); jpayne@68: jpayne@68: /* FetchSharedCythonModule.proto */ jpayne@68: static PyObject *__Pyx_FetchSharedCythonABIModule(void); jpayne@68: jpayne@68: /* FetchCommonType.proto */ jpayne@68: #if !CYTHON_USE_TYPE_SPECS jpayne@68: static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type); jpayne@68: #else jpayne@68: static PyTypeObject* __Pyx_FetchCommonTypeFromSpec(PyObject *module, PyType_Spec *spec, PyObject *bases); jpayne@68: #endif jpayne@68: jpayne@68: /* PyMethodNew.proto */ jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static PyObject *__Pyx_PyMethod_New(PyObject *func, PyObject *self, PyObject *typ) { jpayne@68: PyObject *typesModule=NULL, *methodType=NULL, *result=NULL; jpayne@68: CYTHON_UNUSED_VAR(typ); jpayne@68: if (!self) jpayne@68: return __Pyx_NewRef(func); jpayne@68: typesModule = PyImport_ImportModule("types"); jpayne@68: if (!typesModule) return NULL; jpayne@68: methodType = PyObject_GetAttrString(typesModule, "MethodType"); jpayne@68: Py_DECREF(typesModule); jpayne@68: if (!methodType) return NULL; jpayne@68: result = PyObject_CallFunctionObjArgs(methodType, func, self, NULL); jpayne@68: Py_DECREF(methodType); jpayne@68: return result; jpayne@68: } jpayne@68: #elif PY_MAJOR_VERSION >= 3 jpayne@68: static PyObject *__Pyx_PyMethod_New(PyObject *func, PyObject *self, PyObject *typ) { jpayne@68: CYTHON_UNUSED_VAR(typ); jpayne@68: if (!self) jpayne@68: return __Pyx_NewRef(func); jpayne@68: return PyMethod_New(func, self); jpayne@68: } jpayne@68: #else jpayne@68: #define __Pyx_PyMethod_New PyMethod_New jpayne@68: #endif jpayne@68: jpayne@68: /* PyVectorcallFastCallDict.proto */ jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: static CYTHON_INLINE PyObject *__Pyx_PyVectorcall_FastCallDict(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw); jpayne@68: #endif jpayne@68: jpayne@68: /* CythonFunctionShared.proto */ jpayne@68: #define __Pyx_CyFunction_USED jpayne@68: #define __Pyx_CYFUNCTION_STATICMETHOD 0x01 jpayne@68: #define __Pyx_CYFUNCTION_CLASSMETHOD 0x02 jpayne@68: #define __Pyx_CYFUNCTION_CCLASS 0x04 jpayne@68: #define __Pyx_CYFUNCTION_COROUTINE 0x08 jpayne@68: #define __Pyx_CyFunction_GetClosure(f)\ jpayne@68: (((__pyx_CyFunctionObject *) (f))->func_closure) jpayne@68: #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #define __Pyx_CyFunction_GetClassObj(f)\ jpayne@68: (((__pyx_CyFunctionObject *) (f))->func_classobj) jpayne@68: #else jpayne@68: #define __Pyx_CyFunction_GetClassObj(f)\ jpayne@68: ((PyObject*) ((PyCMethodObject *) (f))->mm_class) jpayne@68: #endif jpayne@68: #define __Pyx_CyFunction_SetClassObj(f, classobj)\ jpayne@68: __Pyx__CyFunction_SetClassObj((__pyx_CyFunctionObject *) (f), (classobj)) jpayne@68: #define __Pyx_CyFunction_Defaults(type, f)\ jpayne@68: ((type *)(((__pyx_CyFunctionObject *) (f))->defaults)) jpayne@68: #define __Pyx_CyFunction_SetDefaultsGetter(f, g)\ jpayne@68: ((__pyx_CyFunctionObject *) (f))->defaults_getter = (g) jpayne@68: typedef struct { jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: PyObject_HEAD jpayne@68: PyObject *func; jpayne@68: #elif PY_VERSION_HEX < 0x030900B1 jpayne@68: PyCFunctionObject func; jpayne@68: #else jpayne@68: PyCMethodObject func; jpayne@68: #endif jpayne@68: #if CYTHON_BACKPORT_VECTORCALL jpayne@68: __pyx_vectorcallfunc func_vectorcall; jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x030500A0 || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: PyObject *func_weakreflist; jpayne@68: #endif jpayne@68: PyObject *func_dict; jpayne@68: PyObject *func_name; jpayne@68: PyObject *func_qualname; jpayne@68: PyObject *func_doc; jpayne@68: PyObject *func_globals; jpayne@68: PyObject *func_code; jpayne@68: PyObject *func_closure; jpayne@68: #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: PyObject *func_classobj; jpayne@68: #endif jpayne@68: void *defaults; jpayne@68: int defaults_pyobjects; jpayne@68: size_t defaults_size; jpayne@68: int flags; jpayne@68: PyObject *defaults_tuple; jpayne@68: PyObject *defaults_kwdict; jpayne@68: PyObject *(*defaults_getter)(PyObject *); jpayne@68: PyObject *func_annotations; jpayne@68: PyObject *func_is_coroutine; jpayne@68: } __pyx_CyFunctionObject; jpayne@68: #undef __Pyx_CyOrPyCFunction_Check jpayne@68: #define __Pyx_CyFunction_Check(obj) __Pyx_TypeCheck(obj, __pyx_CyFunctionType) jpayne@68: #define __Pyx_CyOrPyCFunction_Check(obj) __Pyx_TypeCheck2(obj, __pyx_CyFunctionType, &PyCFunction_Type) jpayne@68: #define __Pyx_CyFunction_CheckExact(obj) __Pyx_IS_TYPE(obj, __pyx_CyFunctionType) jpayne@68: static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc); jpayne@68: #undef __Pyx_IsSameCFunction jpayne@68: #define __Pyx_IsSameCFunction(func, cfunc) __Pyx__IsSameCyOrCFunction(func, cfunc) jpayne@68: static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject* op, PyMethodDef *ml, jpayne@68: int flags, PyObject* qualname, jpayne@68: PyObject *closure, jpayne@68: PyObject *module, PyObject *globals, jpayne@68: PyObject* code); jpayne@68: static CYTHON_INLINE void __Pyx__CyFunction_SetClassObj(__pyx_CyFunctionObject* f, PyObject* classobj); jpayne@68: static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *m, jpayne@68: size_t size, jpayne@68: int pyobjects); jpayne@68: static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *m, jpayne@68: PyObject *tuple); jpayne@68: static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *m, jpayne@68: PyObject *dict); jpayne@68: static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *m, jpayne@68: PyObject *dict); jpayne@68: static int __pyx_CyFunction_init(PyObject *module); jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: static PyObject * __Pyx_CyFunction_Vectorcall_NOARGS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); jpayne@68: static PyObject * __Pyx_CyFunction_Vectorcall_O(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); jpayne@68: static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); jpayne@68: static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); jpayne@68: #if CYTHON_BACKPORT_VECTORCALL jpayne@68: #define __Pyx_CyFunction_func_vectorcall(f) (((__pyx_CyFunctionObject*)f)->func_vectorcall) jpayne@68: #else jpayne@68: #define __Pyx_CyFunction_func_vectorcall(f) (((PyCFunctionObject*)f)->vectorcall) jpayne@68: #endif jpayne@68: #endif jpayne@68: jpayne@68: /* CythonFunction.proto */ jpayne@68: static PyObject *__Pyx_CyFunction_New(PyMethodDef *ml, jpayne@68: int flags, PyObject* qualname, jpayne@68: PyObject *closure, jpayne@68: PyObject *module, PyObject *globals, jpayne@68: PyObject* code); jpayne@68: jpayne@68: /* Py3UpdateBases.proto */ jpayne@68: static PyObject* __Pyx_PEP560_update_bases(PyObject *bases); jpayne@68: jpayne@68: /* CalculateMetaclass.proto */ jpayne@68: static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bases); jpayne@68: jpayne@68: /* SetNameInClass.proto */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && PY_VERSION_HEX < 0x030d0000 jpayne@68: #define __Pyx_SetNameInClass(ns, name, value)\ jpayne@68: (likely(PyDict_CheckExact(ns)) ? _PyDict_SetItem_KnownHash(ns, name, value, ((PyASCIIObject *) name)->hash) : PyObject_SetItem(ns, name, value)) jpayne@68: #elif CYTHON_COMPILING_IN_CPYTHON jpayne@68: #define __Pyx_SetNameInClass(ns, name, value)\ jpayne@68: (likely(PyDict_CheckExact(ns)) ? PyDict_SetItem(ns, name, value) : PyObject_SetItem(ns, name, value)) jpayne@68: #else jpayne@68: #define __Pyx_SetNameInClass(ns, name, value) PyObject_SetItem(ns, name, value) jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectLookupSpecial.proto */ jpayne@68: #if CYTHON_USE_PYTYPE_LOOKUP && CYTHON_USE_TYPE_SLOTS jpayne@68: #define __Pyx_PyObject_LookupSpecialNoError(obj, attr_name) __Pyx__PyObject_LookupSpecial(obj, attr_name, 0) jpayne@68: #define __Pyx_PyObject_LookupSpecial(obj, attr_name) __Pyx__PyObject_LookupSpecial(obj, attr_name, 1) jpayne@68: static CYTHON_INLINE PyObject* __Pyx__PyObject_LookupSpecial(PyObject* obj, PyObject* attr_name, int with_error); jpayne@68: #else jpayne@68: #define __Pyx_PyObject_LookupSpecialNoError(o,n) __Pyx_PyObject_GetAttrStrNoError(o,n) jpayne@68: #define __Pyx_PyObject_LookupSpecial(o,n) __Pyx_PyObject_GetAttrStr(o,n) jpayne@68: #endif jpayne@68: jpayne@68: /* Py3ClassCreate.proto */ jpayne@68: static PyObject *__Pyx_Py3MetaclassPrepare(PyObject *metaclass, PyObject *bases, PyObject *name, PyObject *qualname, jpayne@68: PyObject *mkw, PyObject *modname, PyObject *doc); jpayne@68: static PyObject *__Pyx_Py3ClassCreate(PyObject *metaclass, PyObject *name, PyObject *bases, PyObject *dict, jpayne@68: PyObject *mkw, int calculate_metaclass, int allow_py2_metaclass); jpayne@68: jpayne@68: /* CLineInTraceback.proto */ jpayne@68: #ifdef CYTHON_CLINE_IN_TRACEBACK jpayne@68: #define __Pyx_CLineForTraceback(tstate, c_line) (((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0) jpayne@68: #else jpayne@68: static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line); jpayne@68: #endif jpayne@68: jpayne@68: /* CodeObjectCache.proto */ jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: typedef struct { jpayne@68: PyCodeObject* code_object; jpayne@68: int code_line; jpayne@68: } __Pyx_CodeObjectCacheEntry; jpayne@68: struct __Pyx_CodeObjectCache { jpayne@68: int count; jpayne@68: int max_count; jpayne@68: __Pyx_CodeObjectCacheEntry* entries; jpayne@68: }; jpayne@68: static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL}; jpayne@68: static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line); jpayne@68: static PyCodeObject *__pyx_find_code_object(int code_line); jpayne@68: static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); jpayne@68: #endif jpayne@68: jpayne@68: /* AddTraceback.proto */ jpayne@68: static void __Pyx_AddTraceback(const char *funcname, int c_line, jpayne@68: int py_line, const char *filename); jpayne@68: jpayne@68: /* GCCDiagnostics.proto */ jpayne@68: #if !defined(__INTEL_COMPILER) && defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 6)) jpayne@68: #define __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #endif jpayne@68: jpayne@68: /* ArrayAPI.proto */ jpayne@68: #ifndef _ARRAYARRAY_H jpayne@68: #define _ARRAYARRAY_H jpayne@68: typedef struct arraydescr { jpayne@68: int typecode; jpayne@68: int itemsize; jpayne@68: PyObject * (*getitem)(struct arrayobject *, Py_ssize_t); jpayne@68: int (*setitem)(struct arrayobject *, Py_ssize_t, PyObject *); jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: char *formats; jpayne@68: #endif jpayne@68: } arraydescr; jpayne@68: struct arrayobject { jpayne@68: PyObject_HEAD jpayne@68: Py_ssize_t ob_size; jpayne@68: union { jpayne@68: char *ob_item; jpayne@68: float *as_floats; jpayne@68: double *as_doubles; jpayne@68: int *as_ints; jpayne@68: unsigned int *as_uints; jpayne@68: unsigned char *as_uchars; jpayne@68: signed char *as_schars; jpayne@68: char *as_chars; jpayne@68: unsigned long *as_ulongs; jpayne@68: long *as_longs; jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: unsigned long long *as_ulonglongs; jpayne@68: long long *as_longlongs; jpayne@68: #endif jpayne@68: short *as_shorts; jpayne@68: unsigned short *as_ushorts; jpayne@68: Py_UNICODE *as_pyunicodes; jpayne@68: void *as_voidptr; jpayne@68: } data; jpayne@68: Py_ssize_t allocated; jpayne@68: struct arraydescr *ob_descr; jpayne@68: PyObject *weakreflist; jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: int ob_exports; jpayne@68: #endif jpayne@68: }; jpayne@68: #ifndef NO_NEWARRAY_INLINE jpayne@68: static CYTHON_INLINE PyObject * newarrayobject(PyTypeObject *type, Py_ssize_t size, jpayne@68: struct arraydescr *descr) { jpayne@68: arrayobject *op; jpayne@68: size_t nbytes; jpayne@68: if (size < 0) { jpayne@68: PyErr_BadInternalCall(); jpayne@68: return NULL; jpayne@68: } jpayne@68: nbytes = size * descr->itemsize; jpayne@68: if (nbytes / descr->itemsize != (size_t)size) { jpayne@68: return PyErr_NoMemory(); jpayne@68: } jpayne@68: op = (arrayobject *) type->tp_alloc(type, 0); jpayne@68: if (op == NULL) { jpayne@68: return NULL; jpayne@68: } jpayne@68: op->ob_descr = descr; jpayne@68: op->allocated = size; jpayne@68: op->weakreflist = NULL; jpayne@68: __Pyx_SET_SIZE(op, size); jpayne@68: if (size <= 0) { jpayne@68: op->data.ob_item = NULL; jpayne@68: } jpayne@68: else { jpayne@68: op->data.ob_item = PyMem_NEW(char, nbytes); jpayne@68: if (op->data.ob_item == NULL) { jpayne@68: Py_DECREF(op); jpayne@68: return PyErr_NoMemory(); jpayne@68: } jpayne@68: } jpayne@68: return (PyObject *) op; jpayne@68: } jpayne@68: #else jpayne@68: PyObject* newarrayobject(PyTypeObject *type, Py_ssize_t size, jpayne@68: struct arraydescr *descr); jpayne@68: #endif jpayne@68: static CYTHON_INLINE int resize(arrayobject *self, Py_ssize_t n) { jpayne@68: void *items = (void*) self->data.ob_item; jpayne@68: PyMem_Resize(items, char, (size_t)(n * self->ob_descr->itemsize)); jpayne@68: if (items == NULL) { jpayne@68: PyErr_NoMemory(); jpayne@68: return -1; jpayne@68: } jpayne@68: self->data.ob_item = (char*) items; jpayne@68: __Pyx_SET_SIZE(self, n); jpayne@68: self->allocated = n; jpayne@68: return 0; jpayne@68: } jpayne@68: static CYTHON_INLINE int resize_smart(arrayobject *self, Py_ssize_t n) { jpayne@68: void *items = (void*) self->data.ob_item; jpayne@68: Py_ssize_t newsize; jpayne@68: if (n < self->allocated && n*4 > self->allocated) { jpayne@68: __Pyx_SET_SIZE(self, n); jpayne@68: return 0; jpayne@68: } jpayne@68: newsize = n + (n / 2) + 1; jpayne@68: if (newsize <= n) { jpayne@68: PyErr_NoMemory(); jpayne@68: return -1; jpayne@68: } jpayne@68: PyMem_Resize(items, char, (size_t)(newsize * self->ob_descr->itemsize)); jpayne@68: if (items == NULL) { jpayne@68: PyErr_NoMemory(); jpayne@68: return -1; jpayne@68: } jpayne@68: self->data.ob_item = (char*) items; jpayne@68: __Pyx_SET_SIZE(self, n); jpayne@68: self->allocated = newsize; jpayne@68: return 0; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* CIntFromPy.proto */ jpayne@68: static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); jpayne@68: jpayne@68: /* CIntToPy.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); jpayne@68: jpayne@68: /* CIntFromPy.proto */ jpayne@68: static CYTHON_INLINE uint64_t __Pyx_PyInt_As_uint64_t(PyObject *); jpayne@68: jpayne@68: /* CIntToPy.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_off_t(off_t value); jpayne@68: jpayne@68: /* CIntToPy.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__htsFormatCategory(enum htsFormatCategory value); jpayne@68: jpayne@68: /* CIntToPy.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__htsExactFormat(enum htsExactFormat value); jpayne@68: jpayne@68: /* CIntToPy.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_short(short value); jpayne@68: jpayne@68: /* CIntToPy.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__htsCompression(enum htsCompression value); jpayne@68: jpayne@68: /* CIntToPy.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int64_t(int64_t value); jpayne@68: jpayne@68: /* CIntFromPy.proto */ jpayne@68: static CYTHON_INLINE int32_t __Pyx_PyInt_As_int32_t(PyObject *); jpayne@68: jpayne@68: /* CIntToPy.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); jpayne@68: jpayne@68: /* CIntToPy.proto */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int32_t(int32_t value); jpayne@68: jpayne@68: /* FormatTypeName.proto */ jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: typedef PyObject *__Pyx_TypeName; jpayne@68: #define __Pyx_FMT_TYPENAME "%U" jpayne@68: static __Pyx_TypeName __Pyx_PyType_GetName(PyTypeObject* tp); jpayne@68: #define __Pyx_DECREF_TypeName(obj) Py_XDECREF(obj) jpayne@68: #else jpayne@68: typedef const char *__Pyx_TypeName; jpayne@68: #define __Pyx_FMT_TYPENAME "%.200s" jpayne@68: #define __Pyx_PyType_GetName(tp) ((tp)->tp_name) jpayne@68: #define __Pyx_DECREF_TypeName(obj) jpayne@68: #endif jpayne@68: jpayne@68: /* CIntFromPy.proto */ jpayne@68: static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); jpayne@68: jpayne@68: /* FastTypeChecks.proto */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: #define __Pyx_TypeCheck(obj, type) __Pyx_IsSubtype(Py_TYPE(obj), (PyTypeObject *)type) jpayne@68: #define __Pyx_TypeCheck2(obj, type1, type2) __Pyx_IsAnySubtype2(Py_TYPE(obj), (PyTypeObject *)type1, (PyTypeObject *)type2) jpayne@68: static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b); jpayne@68: static CYTHON_INLINE int __Pyx_IsAnySubtype2(PyTypeObject *cls, PyTypeObject *a, PyTypeObject *b); jpayne@68: static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject *type); jpayne@68: static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *type1, PyObject *type2); jpayne@68: #else jpayne@68: #define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) jpayne@68: #define __Pyx_TypeCheck2(obj, type1, type2) (PyObject_TypeCheck(obj, (PyTypeObject *)type1) || PyObject_TypeCheck(obj, (PyTypeObject *)type2)) jpayne@68: #define __Pyx_PyErr_GivenExceptionMatches(err, type) PyErr_GivenExceptionMatches(err, type) jpayne@68: #define __Pyx_PyErr_GivenExceptionMatches2(err, type1, type2) (PyErr_GivenExceptionMatches(err, type1) || PyErr_GivenExceptionMatches(err, type2)) jpayne@68: #endif jpayne@68: #define __Pyx_PyErr_ExceptionMatches2(err1, err2) __Pyx_PyErr_GivenExceptionMatches2(__Pyx_PyErr_CurrentExceptionType(), err1, err2) jpayne@68: #define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception) jpayne@68: jpayne@68: /* CheckBinaryVersion.proto */ jpayne@68: static unsigned long __Pyx_get_runtime_version(void); jpayne@68: static int __Pyx_check_binary_version(unsigned long ct_version, unsigned long rt_version, int allow_newer); jpayne@68: jpayne@68: /* FunctionImport.proto */ jpayne@68: static int __Pyx_ImportFunction_3_0_11(PyObject *module, const char *funcname, void (**f)(void), const char *sig); jpayne@68: jpayne@68: /* InitStrings.proto */ jpayne@68: static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); jpayne@68: jpayne@68: /* #### Code section: module_declarations ### */ jpayne@68: static CYTHON_INLINE double __pyx_f_7cpython_7complex_7complex_4real_real(PyComplexObject *__pyx_v_self); /* proto*/ jpayne@68: static CYTHON_INLINE double __pyx_f_7cpython_7complex_7complex_4imag_imag(PyComplexObject *__pyx_v_self); /* proto*/ jpayne@68: static PyObject *__pyx_f_5pysam_10libchtslib_5HFile__open(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, PyObject *__pyx_v_name, PyObject *__pyx_v_mode, struct __pyx_opt_args_5pysam_10libchtslib_5HFile__open *__pyx_optional_args); /* proto*/ jpayne@68: static htsFile *__pyx_f_5pysam_10libchtslib_7HTSFile__open_htsfile(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto*/ jpayne@68: jpayne@68: /* Module declarations from "libc.stdint" */ jpayne@68: jpayne@68: /* Module declarations from "libc.string" */ jpayne@68: jpayne@68: /* Module declarations from "libc.stdlib" */ jpayne@68: jpayne@68: /* Module declarations from "libc.stdio" */ jpayne@68: jpayne@68: /* Module declarations from "posix.types" */ jpayne@68: jpayne@68: /* Module declarations from "posix.unistd" */ jpayne@68: jpayne@68: /* Module declarations from "libc.errno" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.version" */ jpayne@68: jpayne@68: /* Module declarations from "__builtin__" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.type" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.object" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.ref" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.exc" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.module" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.mem" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.tuple" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.list" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.sequence" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.mapping" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.iterator" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.number" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.int" */ jpayne@68: jpayne@68: /* Module declarations from "__builtin__" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.bool" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.long" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.float" */ jpayne@68: jpayne@68: /* Module declarations from "__builtin__" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.complex" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.string" */ jpayne@68: jpayne@68: /* Module declarations from "libc.stddef" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.unicode" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.pyport" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.dict" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.instance" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.function" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.method" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.weakref" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.getargs" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.pythread" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.pystate" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.cobject" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.oldbuffer" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.set" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.buffer" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.bytes" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.pycapsule" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.contextvars" */ jpayne@68: jpayne@68: /* Module declarations from "cpython" */ jpayne@68: jpayne@68: /* Module declarations from "cython" */ jpayne@68: jpayne@68: /* Module declarations from "array" */ jpayne@68: jpayne@68: /* Module declarations from "cpython.array" */ jpayne@68: static CYTHON_INLINE int __pyx_f_7cpython_5array_extend_buffer(arrayobject *, char *, Py_ssize_t); /*proto*/ jpayne@68: jpayne@68: /* Module declarations from "pysam.libcutils" */ jpayne@68: static int (*__pyx_f_5pysam_9libcutils_libc_whence_from_io)(int); /*proto*/ jpayne@68: static PyObject *(*__pyx_f_5pysam_9libcutils_charptr_to_str)(char const *, struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str *__pyx_optional_args); /*proto*/ jpayne@68: static PyObject *(*__pyx_f_5pysam_9libcutils_charptr_to_str_w_len)(char const *, size_t, struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str_w_len *__pyx_optional_args); /*proto*/ jpayne@68: static PyObject *(*__pyx_f_5pysam_9libcutils_force_str)(PyObject *, struct __pyx_opt_args_5pysam_9libcutils_force_str *__pyx_optional_args); /*proto*/ jpayne@68: static PyObject *(*__pyx_f_5pysam_9libcutils_force_bytes)(PyObject *, struct __pyx_opt_args_5pysam_9libcutils_force_bytes *__pyx_optional_args); /*proto*/ jpayne@68: static PyObject *(*__pyx_f_5pysam_9libcutils_encode_filename)(PyObject *); /*proto*/ jpayne@68: static PyObject *(*__pyx_f_5pysam_9libcutils_from_string_and_size)(char const *, size_t); /*proto*/ jpayne@68: jpayne@68: /* Module declarations from "pysam.libchtslib" */ jpayne@68: static int __pyx_v_5pysam_10libchtslib_MAX_POS; jpayne@68: static PyObject *__pyx_v_5pysam_10libchtslib_FORMAT_CATEGORIES = 0; jpayne@68: static PyObject *__pyx_v_5pysam_10libchtslib_FORMATS = 0; jpayne@68: static PyObject *__pyx_v_5pysam_10libchtslib_COMPRESSION = 0; jpayne@68: static PyObject *__pyx_f_5pysam_10libchtslib_set_verbosity(int, int __pyx_skip_dispatch); /*proto*/ jpayne@68: static PyObject *__pyx_f_5pysam_10libchtslib_get_verbosity(int __pyx_skip_dispatch); /*proto*/ jpayne@68: /* #### Code section: typeinfo ### */ jpayne@68: /* #### Code section: before_global_var ### */ jpayne@68: #define __Pyx_MODULE_NAME "pysam.libchtslib" jpayne@68: extern int __pyx_module_is_main_pysam__libchtslib; jpayne@68: int __pyx_module_is_main_pysam__libchtslib = 0; jpayne@68: jpayne@68: /* Implementation of "pysam.libchtslib" */ jpayne@68: /* #### Code section: global_var ### */ jpayne@68: static PyObject *__pyx_builtin_object; jpayne@68: static PyObject *__pyx_builtin_IOError; jpayne@68: static PyObject *__pyx_builtin_AttributeError; jpayne@68: static PyObject *__pyx_builtin_StopIteration; jpayne@68: static PyObject *__pyx_builtin_NotImplementedError; jpayne@68: static PyObject *__pyx_builtin_TypeError; jpayne@68: static PyObject *__pyx_builtin_OSError; jpayne@68: static PyObject *__pyx_builtin_ValueError; jpayne@68: static PyObject *__pyx_builtin_RuntimeError; jpayne@68: static PyObject *__pyx_builtin_OverflowError; jpayne@68: static PyObject *__pyx_builtin_IndexError; jpayne@68: static PyObject *__pyx_builtin_MemoryError; jpayne@68: /* #### Code section: string_decls ### */ jpayne@68: static const char __pyx_k_b[] = "b"; jpayne@68: static const char __pyx_k_c[] = "c"; jpayne@68: static const char __pyx_k_r[] = "r"; jpayne@68: static const char __pyx_k_w[] = "w"; jpayne@68: static const char __pyx_k_eq[] = "__eq__"; jpayne@68: static const char __pyx_k_fd[] = ""; jpayne@68: static const char __pyx_k_fp[] = "fp"; jpayne@68: static const char __pyx_k_gc[] = "gc"; jpayne@68: static const char __pyx_k_io[] = "io"; jpayne@68: static const char __pyx_k_mv[] = "mv"; jpayne@68: static const char __pyx_k_ne[] = "__ne__"; jpayne@68: static const char __pyx_k_os[] = "os"; jpayne@68: static const char __pyx_k_re[] = "re"; jpayne@68: static const char __pyx_k_tb[] = "tb"; jpayne@68: static const char __pyx_k_BAI[] = "BAI"; jpayne@68: static const char __pyx_k_BAM[] = "BAM"; jpayne@68: static const char __pyx_k_BCF[] = "BCF"; jpayne@68: static const char __pyx_k_BED[] = "BED"; jpayne@68: static const char __pyx_k_CSI[] = "CSI"; jpayne@68: static const char __pyx_k_GZI[] = "GZI"; jpayne@68: static const char __pyx_k_SAM[] = "SAM"; jpayne@68: static const char __pyx_k_TBI[] = "TBI"; jpayne@68: static const char __pyx_k_VCF[] = "VCF"; jpayne@68: static const char __pyx_k__13[] = ""; jpayne@68: static const char __pyx_k__55[] = ":"; jpayne@68: static const char __pyx_k__56[] = "-"; jpayne@68: static const char __pyx_k__58[] = "*"; jpayne@68: static const char __pyx_k__59[] = "."; jpayne@68: static const char __pyx_k__97[] = "?"; jpayne@68: static const char __pyx_k_all[] = "__all__"; jpayne@68: static const char __pyx_k_buf[] = "buf"; jpayne@68: static const char __pyx_k_doc[] = "__doc__"; jpayne@68: static const char __pyx_k_end[] = "end"; jpayne@68: static const char __pyx_k_got[] = "got"; jpayne@68: static const char __pyx_k_msg[] = "msg"; jpayne@68: static const char __pyx_k_off[] = "off"; jpayne@68: static const char __pyx_k_ret[] = "ret"; jpayne@68: static const char __pyx_k_tid[] = "tid"; jpayne@68: static const char __pyx_k_BGZF[] = "BGZF"; jpayne@68: static const char __pyx_k_CRAI[] = "CRAI"; jpayne@68: static const char __pyx_k_CRAM[] = "CRAM"; jpayne@68: static const char __pyx_k_GZIP[] = "GZIP"; jpayne@68: static const char __pyx_k_NONE[] = "NONE"; jpayne@68: static const char __pyx_k_bool[] = "__bool__"; jpayne@68: static const char __pyx_k_call[] = "__call__"; jpayne@68: static const char __pyx_k_dict[] = "__dict__"; jpayne@68: static const char __pyx_k_exit[] = "__exit__"; jpayne@68: static const char __pyx_k_init[] = "__init__"; jpayne@68: static const char __pyx_k_join[] = "join"; jpayne@68: static const char __pyx_k_line[] = "line"; jpayne@68: static const char __pyx_k_main[] = "__main__"; jpayne@68: static const char __pyx_k_mode[] = "mode"; jpayne@68: static const char __pyx_k_name[] = "name"; jpayne@68: static const char __pyx_k_opts[] = "opts"; jpayne@68: static const char __pyx_k_part[] = "part"; jpayne@68: static const char __pyx_k_read[] = "read"; jpayne@68: static const char __pyx_k_rtid[] = "rtid"; jpayne@68: static const char __pyx_k_rval[] = "rval"; jpayne@68: static const char __pyx_k_seek[] = "seek"; jpayne@68: static const char __pyx_k_self[] = "self"; jpayne@68: static const char __pyx_k_size[] = "size"; jpayne@68: static const char __pyx_k_spec[] = "__spec__"; jpayne@68: static const char __pyx_k_stop[] = "stop"; jpayne@68: static const char __pyx_k_tell[] = "tell"; jpayne@68: static const char __pyx_k_test[] = "__test__"; jpayne@68: static const char __pyx_k_type[] = "type"; jpayne@68: static const char __pyx_k_warn[] = "warn"; jpayne@68: static const char __pyx_k_CTrue[] = "CTrue"; jpayne@68: static const char __pyx_k_HFile[] = "HFile"; jpayne@68: static const char __pyx_k_INDEX[] = "INDEX"; jpayne@68: static const char __pyx_k_bgzfp[] = "bgzfp"; jpayne@68: static const char __pyx_k_close[] = "close"; jpayne@68: static const char __pyx_k_coord[] = "coord"; jpayne@68: static const char __pyx_k_cpart[] = "cpart"; jpayne@68: static const char __pyx_k_enter[] = "__enter__"; jpayne@68: static const char __pyx_k_flush[] = "flush"; jpayne@68: static const char __pyx_k_lines[] = "lines"; jpayne@68: static const char __pyx_k_other[] = "other"; jpayne@68: static const char __pyx_k_parts[] = "parts"; jpayne@68: static const char __pyx_k_reset[] = "reset"; jpayne@68: static const char __pyx_k_rstop[] = "rstop"; jpayne@68: static const char __pyx_k_split[] = "split"; jpayne@68: static const char __pyx_k_start[] = "start"; jpayne@68: static const char __pyx_k_super[] = "super"; jpayne@68: static const char __pyx_k_value[] = "value"; jpayne@68: static const char __pyx_k_write[] = "write"; jpayne@68: static const char __pyx_k_CFalse[] = "CFalse"; jpayne@68: static const char __pyx_k_CUSTOM[] = "CUSTOM"; jpayne@68: static const char __pyx_k_contig[] = "contig"; jpayne@68: static const char __pyx_k_enable[] = "enable"; jpayne@68: static const char __pyx_k_failed[] = " failed"; jpayne@68: static const char __pyx_k_fileno[] = "fileno"; jpayne@68: static const char __pyx_k_format[] = "format"; jpayne@68: static const char __pyx_k_import[] = "__import__"; jpayne@68: static const char __pyx_k_isatty[] = "isatty"; jpayne@68: static const char __pyx_k_module[] = "__module__"; jpayne@68: static const char __pyx_k_name_2[] = "__name__"; jpayne@68: static const char __pyx_k_object[] = "object"; jpayne@68: static const char __pyx_k_offset[] = "offset"; jpayne@68: static const char __pyx_k_reduce[] = "__reduce__"; jpayne@68: static const char __pyx_k_region[] = "region"; jpayne@68: static const char __pyx_k_rstart[] = "rstart"; jpayne@68: static const char __pyx_k_whence[] = "whence"; jpayne@68: static const char __pyx_k_HTSFile[] = "HTSFile"; jpayne@68: static const char __pyx_k_IOError[] = "IOError"; jpayne@68: static const char __pyx_k_OSError[] = "OSError"; jpayne@68: static const char __pyx_k_REGIONS[] = "REGIONS"; jpayne@68: static const char __pyx_k_UNKNOWN[] = "UNKNOWN"; jpayne@68: static const char __pyx_k_closefd[] = "closefd"; jpayne@68: static const char __pyx_k_disable[] = "disable"; jpayne@68: static const char __pyx_k_get_tid[] = "get_tid"; jpayne@68: static const char __pyx_k_is_open[] = "is_open"; jpayne@68: static const char __pyx_k_nonzero[] = "__nonzero__"; jpayne@68: static const char __pyx_k_prepare[] = "__prepare__"; jpayne@68: static const char __pyx_k_readall[] = "readall"; jpayne@68: static const char __pyx_k_replace[] = "replace"; jpayne@68: static const char __pyx_k_Flushing[] = "Flushing "; jpayne@68: static const char __pyx_k_SEEK_SET[] = "SEEK_SET"; jpayne@68: static const char __pyx_k_VARIANTS[] = "VARIANTS"; jpayne@68: static const char __pyx_k_exc_type[] = "exc_type"; jpayne@68: static const char __pyx_k_getstate[] = "__getstate__"; jpayne@68: static const char __pyx_k_qualname[] = "__qualname__"; jpayne@68: static const char __pyx_k_readable[] = "readable"; jpayne@68: static const char __pyx_k_readinto[] = "readinto"; jpayne@68: static const char __pyx_k_readline[] = "readline"; jpayne@68: static const char __pyx_k_seekable[] = "seekable"; jpayne@68: static const char __pyx_k_set_name[] = "__set_name__"; jpayne@68: static const char __pyx_k_setstate[] = "__setstate__"; jpayne@68: static const char __pyx_k_truncate[] = "truncate"; jpayne@68: static const char __pyx_k_warnings[] = "warnings"; jpayne@68: static const char __pyx_k_writable[] = "writable"; jpayne@68: static const char __pyx_k_TypeError[] = "TypeError"; jpayne@68: static const char __pyx_k_exc_value[] = "exc_value"; jpayne@68: static const char __pyx_k_isenabled[] = "isenabled"; jpayne@68: static const char __pyx_k_metaclass[] = "__metaclass__"; jpayne@68: static const char __pyx_k_pyx_state[] = "__pyx_state"; jpayne@68: static const char __pyx_k_readlines[] = "readlines"; jpayne@68: static const char __pyx_k_reduce_ex[] = "__reduce_ex__"; jpayne@68: static const char __pyx_k_reference[] = "reference"; jpayne@68: static const char __pyx_k_traceback[] = "traceback"; jpayne@68: static const char __pyx_k_verbosity[] = "verbosity"; jpayne@68: static const char __pyx_k_ALIGNMENTS[] = "ALIGNMENTS"; jpayne@68: static const char __pyx_k_HFile_read[] = "HFile.read"; jpayne@68: static const char __pyx_k_HFile_seek[] = "HFile.seek"; jpayne@68: static const char __pyx_k_HFile_tell[] = "HFile.tell"; jpayne@68: static const char __pyx_k_IndexError[] = "IndexError"; jpayne@68: static const char __pyx_k_ValueError[] = "ValueError"; jpayne@68: static const char __pyx_k_bytes_read[] = "bytes_read"; jpayne@68: static const char __pyx_k_chunk_size[] = "chunk_size"; jpayne@68: static const char __pyx_k_pyx_vtable[] = "__pyx_vtable__"; jpayne@68: static const char __pyx_k_writelines[] = "writelines"; jpayne@68: static const char __pyx_k_HFile_close[] = "HFile.close"; jpayne@68: static const char __pyx_k_HFile_flush[] = "HFile.flush"; jpayne@68: static const char __pyx_k_HFile_write[] = "HFile.write"; jpayne@68: static const char __pyx_k_MemoryError[] = "MemoryError"; jpayne@68: static const char __pyx_k_TEXT_FORMAT[] = "TEXT_FORMAT"; jpayne@68: static const char __pyx_k_invalid_tid[] = "invalid tid"; jpayne@68: static const char __pyx_k_mro_entries[] = "__mro_entries__"; jpayne@68: static const char __pyx_k_HFile___exit[] = "HFile.__exit__"; jpayne@68: static const char __pyx_k_HFile_fileno[] = "HFile.fileno"; jpayne@68: static const char __pyx_k_HFile_isatty[] = "HFile.isatty"; jpayne@68: static const char __pyx_k_HTSFile_seek[] = "HTSFile.seek"; jpayne@68: static const char __pyx_k_HTSFile_tell[] = "HTSFile.tell"; jpayne@68: static const char __pyx_k_RuntimeError[] = "RuntimeError"; jpayne@68: static const char __pyx_k_initializing[] = "_initializing"; jpayne@68: static const char __pyx_k_is_coroutine[] = "_is_coroutine"; jpayne@68: static const char __pyx_k_is_valid_tid[] = "is_valid_tid"; jpayne@68: static const char __pyx_k_parse_region[] = "parse_region"; jpayne@68: static const char __pyx_k_stringsource[] = ""; jpayne@68: static const char __pyx_k_BINARY_FORMAT[] = "BINARY_FORMAT"; jpayne@68: static const char __pyx_k_CallableValue[] = "CallableValue"; jpayne@68: static const char __pyx_k_HFile___enter[] = "HFile.__enter__"; jpayne@68: static const char __pyx_k_HFile_readall[] = "HFile.readall"; jpayne@68: static const char __pyx_k_HTSFile_close[] = "HTSFile.close"; jpayne@68: static const char __pyx_k_HTSFile_flush[] = "HTSFile.flush"; jpayne@68: static const char __pyx_k_HTSFile_reset[] = "HTSFile.reset"; jpayne@68: static const char __pyx_k_OverflowError[] = "OverflowError"; jpayne@68: static const char __pyx_k_StopIteration[] = "StopIteration"; jpayne@68: static const char __pyx_k_class_getitem[] = "__class_getitem__"; jpayne@68: static const char __pyx_k_format_option[] = "format_option"; jpayne@68: static const char __pyx_k_get_verbosity[] = "get_verbosity"; jpayne@68: static const char __pyx_k_init_subclass[] = "__init_subclass__"; jpayne@68: static const char __pyx_k_reduce_cython[] = "__reduce_cython__"; jpayne@68: static const char __pyx_k_set_verbosity[] = "set_verbosity"; jpayne@68: static const char __pyx_k_AttributeError[] = "AttributeError"; jpayne@68: static const char __pyx_k_HFile_readable[] = "HFile.readable"; jpayne@68: static const char __pyx_k_HFile_readinto[] = "HFile.readinto"; jpayne@68: static const char __pyx_k_HFile_readline[] = "HFile.readline"; jpayne@68: static const char __pyx_k_HFile_seekable[] = "HFile.seekable"; jpayne@68: static const char __pyx_k_HFile_truncate[] = "HFile.truncate"; jpayne@68: static const char __pyx_k_HFile_writable[] = "HFile.writable"; jpayne@68: static const char __pyx_k_HTSFile___exit[] = "HTSFile.__exit__"; jpayne@68: static const char __pyx_k_format_options[] = "format_options"; jpayne@68: static const char __pyx_k_HFile_readlines[] = "HFile.readlines"; jpayne@68: static const char __pyx_k_HTSFile___enter[] = "HTSFile.__enter__"; jpayne@68: static const char __pyx_k_HTSFile_get_tid[] = "HTSFile.get_tid"; jpayne@68: static const char __pyx_k_add_hts_options[] = "add_hts_options"; jpayne@68: static const char __pyx_k_setstate_cython[] = "__setstate_cython__"; jpayne@68: static const char __pyx_k_HFile_writelines[] = "HFile.writelines"; jpayne@68: static const char __pyx_k_check_truncation[] = "check_truncation"; jpayne@68: static const char __pyx_k_invalid_contig_s[] = "invalid contig `%s`"; jpayne@68: static const char __pyx_k_pysam_libchtslib[] = "pysam.libchtslib"; jpayne@68: static const char __pyx_k_ignore_truncation[] = "ignore_truncation"; jpayne@68: static const char __pyx_k_CallableValue___eq[] = "CallableValue.__eq__"; jpayne@68: static const char __pyx_k_CallableValue___ne[] = "CallableValue.__ne__"; jpayne@68: static const char __pyx_k_asyncio_coroutines[] = "asyncio.coroutines"; jpayne@68: static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback"; jpayne@68: static const char __pyx_k_get_reference_name[] = "get_reference_name"; jpayne@68: static const char __pyx_k_Cannot_create_hfile[] = "Cannot create hfile"; jpayne@68: static const char __pyx_k_NotImplementedError[] = "NotImplementedError"; jpayne@68: static const char __pyx_k_stop_out_of_range_i[] = "stop out of range (%i)"; jpayne@68: static const char __pyx_k_CallableValue___bool[] = "CallableValue.__bool__"; jpayne@68: static const char __pyx_k_CallableValue___call[] = "CallableValue.__call__"; jpayne@68: static const char __pyx_k_CallableValue___init[] = "CallableValue.__init__"; jpayne@68: static const char __pyx_k_HTSFile_is_valid_tid[] = "HTSFile.is_valid_tid"; jpayne@68: static const char __pyx_k_HTSFile_parse_region[] = "HTSFile.parse_region"; jpayne@68: static const char __pyx_k_failed_to_open_HFile[] = "failed to open HFile"; jpayne@68: static const char __pyx_k_failed_to_read_HFile[] = "failed to read HFile"; jpayne@68: static const char __pyx_k_fileno_not_available[] = "fileno not available"; jpayne@68: static const char __pyx_k_pysam_libchtslib_pyx[] = "pysam/libchtslib.pyx"; jpayne@68: static const char __pyx_k_seek_failed_on_HFile[] = "seek failed on HFile"; jpayne@68: static const char __pyx_k_start_out_of_range_i[] = "start out of range (%i)"; jpayne@68: static const char __pyx_k_tell_failed_on_HFile[] = "tell failed on HFile"; jpayne@68: static const char __pyx_k_HFile___reduce_cython[] = "HFile.__reduce_cython__"; jpayne@68: static const char __pyx_k_failed_to_close_HFile[] = "failed to close HFile"; jpayne@68: static const char __pyx_k_failed_to_flush_HFile[] = "failed to flush HFile"; jpayne@68: static const char __pyx_k_write_failed_on_HFile[] = "write failed on HFile"; jpayne@68: static const char __pyx_k_CallableValue___nonzero[] = "CallableValue.__nonzero__"; jpayne@68: static const char __pyx_k_HFile___setstate_cython[] = "HFile.__setstate_cython__"; jpayne@68: static const char __pyx_k_HTSFile___reduce_cython[] = "HTSFile.__reduce_cython__"; jpayne@68: static const char __pyx_k_HTSFile_add_hts_options[] = "HTSFile.add_hts_options"; jpayne@68: static const char __pyx_k_is_valid_reference_name[] = "is_valid_reference_name"; jpayne@68: static const char __pyx_k_HTSFile_check_truncation[] = "HTSFile.check_truncation"; jpayne@68: static const char __pyx_k_HTSFile___setstate_cython[] = "HTSFile.__setstate_cython__"; jpayne@68: static const char __pyx_k_operation_on_closed_HFile[] = "operation on closed HFile"; jpayne@68: static const char __pyx_k_HTSFile_get_reference_name[] = "HTSFile.get_reference_name"; jpayne@68: static const char __pyx_k_I_O_operation_on_closed_file[] = "I/O operation on closed file"; jpayne@68: static const char __pyx_k_error_checking_for_EOF_marker[] = "error checking for EOF marker"; jpayne@68: static const char __pyx_k_seek_not_available_in_streams[] = "seek not available in streams"; jpayne@68: static const char __pyx_k_tell_not_available_in_streams[] = "tell not available in streams"; jpayne@68: static const char __pyx_k_HTSFile_is_valid_reference_name[] = "HTSFile.is_valid_reference_name"; jpayne@68: static const char __pyx_k_Invalid_format_option_specified[] = "Invalid format option ({}) specified"; jpayne@68: static const char __pyx_k_contig_and_reference_should_not[] = "contig and reference should not both be specified"; jpayne@68: static const char __pyx_k_stop_and_end_should_not_both_be[] = "stop and end should not both be specified"; jpayne@68: static const char __pyx_k_An_error_occurred_while_applying[] = "An error occurred while applying the requested format options"; jpayne@68: static const char __pyx_k_invalid_coordinates_start_i_stop[] = "invalid coordinates: start (%i) > stop (%i)"; jpayne@68: static const char __pyx_k_metadata_not_available_on_closed[] = "metadata not available on closed file"; jpayne@68: static const char __pyx_k_no_BGZF_EOF_marker_file_may_be_t[] = "no BGZF EOF marker; file may be truncated"; jpayne@68: static const char __pyx_k_no_default___reduce___due_to_non[] = "no default __reduce__ due to non-trivial __cinit__"; jpayne@68: static const char __pyx_k_seek_not_implemented_in_files_co[] = "seek not implemented in files compressed by method {}"; jpayne@68: static const char __pyx_k_self_fp_cannot_be_converted_to_a[] = "self.fp cannot be converted to a Python object for pickling"; jpayne@68: /* #### Code section: decls ### */ jpayne@68: static int __pyx_pf_7cpython_5array_5array___getbuffer__(arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info, CYTHON_UNUSED int __pyx_v_flags); /* proto */ jpayne@68: static void __pyx_pf_7cpython_5array_5array_2__releasebuffer__(CYTHON_UNUSED arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_set_verbosity(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_verbosity); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_2get_verbosity(CYTHON_UNUSED PyObject *__pyx_self); /* proto */ jpayne@68: static int __pyx_pf_5pysam_10libchtslib_5HFile___init__(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, PyObject *__pyx_v_name, PyObject *__pyx_v_mode, CYTHON_UNUSED PyObject *__pyx_v_closefd); /* proto */ jpayne@68: static void __pyx_pf_5pysam_10libchtslib_5HFile_2__dealloc__(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_6closed___get__(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_4close(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_6fileno(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_8__enter__(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_10__exit__(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_type, CYTHON_UNUSED PyObject *__pyx_v_value, CYTHON_UNUSED PyObject *__pyx_v_tb); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_12__iter__(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_14__next__(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_16flush(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_18isatty(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_20readable(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_22read(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, Py_ssize_t __pyx_v_size); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_24readall(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_26readinto(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, PyObject *__pyx_v_buf); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_28readline(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, Py_ssize_t __pyx_v_size); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_30readlines(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_32seek(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, Py_ssize_t __pyx_v_offset, int __pyx_v_whence); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_34tell(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_36seekable(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_38truncate(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_size); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_40writable(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_42write(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, PyObject *__pyx_v_b); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_44writelines(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, PyObject *__pyx_v_lines); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_4name___get__(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_4mode___get__(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_46__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_48__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_13CallableValue___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_13CallableValue_2__call__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_13CallableValue_4__bool__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_13CallableValue_6__nonzero__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_13CallableValue_8__eq__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_other); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_13CallableValue_10__ne__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_other); /* proto */ jpayne@68: static int __pyx_pf_5pysam_10libchtslib_7HTSFile___cinit__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_2close(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static void __pyx_pf_5pysam_10libchtslib_7HTSFile_4__dealloc__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_6flush(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_8check_truncation(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, PyObject *__pyx_v_ignore_truncation); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_10__enter__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_12__exit__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_exc_type, CYTHON_UNUSED PyObject *__pyx_v_exc_value, CYTHON_UNUSED PyObject *__pyx_v_traceback); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_8category___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_6format___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_7version___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_11compression___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_11description___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_7is_open___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_9is_closed___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_6closed___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_8is_write___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_7is_read___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_6is_sam___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_6is_bam___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_7is_cram___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_6is_vcf___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_6is_bcf___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_14reset(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_16seek(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, uint64_t __pyx_v_offset, int __pyx_v_whence); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_18tell(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_20add_hts_options(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, PyObject *__pyx_v_format_options); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_22parse_region(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, PyObject *__pyx_v_contig, PyObject *__pyx_v_start, PyObject *__pyx_v_stop, PyObject *__pyx_v_region, PyObject *__pyx_v_tid, PyObject *__pyx_v_reference, PyObject *__pyx_v_end); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_24is_valid_tid(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_tid); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_26is_valid_reference_name(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, PyObject *__pyx_v_contig); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_28get_tid(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_contig); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_30get_reference_name(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_tid); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_8filename___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_4mode___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_7threads___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_14index_filename___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_9is_stream___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_9is_remote___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_20duplicate_filehandle___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_32__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */ jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_34__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */ jpayne@68: static PyObject *__pyx_tp_new_5pysam_10libchtslib_HTSFile(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ jpayne@68: static PyObject *__pyx_tp_new_5pysam_10libchtslib_HFile(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ jpayne@68: /* #### Code section: late_includes ### */ jpayne@68: /* #### Code section: module_state ### */ jpayne@68: typedef struct { jpayne@68: PyObject *__pyx_d; jpayne@68: PyObject *__pyx_b; jpayne@68: PyObject *__pyx_cython_runtime; jpayne@68: PyObject *__pyx_empty_tuple; jpayne@68: PyObject *__pyx_empty_bytes; jpayne@68: PyObject *__pyx_empty_unicode; jpayne@68: #ifdef __Pyx_CyFunction_USED jpayne@68: PyTypeObject *__pyx_CyFunctionType; jpayne@68: #endif jpayne@68: #ifdef __Pyx_FusedFunction_USED jpayne@68: PyTypeObject *__pyx_FusedFunctionType; jpayne@68: #endif jpayne@68: #ifdef __Pyx_Generator_USED jpayne@68: PyTypeObject *__pyx_GeneratorType; jpayne@68: #endif jpayne@68: #ifdef __Pyx_IterableCoroutine_USED jpayne@68: PyTypeObject *__pyx_IterableCoroutineType; jpayne@68: #endif jpayne@68: #ifdef __Pyx_Coroutine_USED jpayne@68: PyTypeObject *__pyx_CoroutineAwaitType; jpayne@68: #endif jpayne@68: #ifdef __Pyx_Coroutine_USED jpayne@68: PyTypeObject *__pyx_CoroutineType; jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: PyTypeObject *__pyx_ptype_7cpython_4type_type; jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: PyTypeObject *__pyx_ptype_7cpython_4bool_bool; jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: PyTypeObject *__pyx_ptype_7cpython_7complex_complex; jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: PyTypeObject *__pyx_ptype_7cpython_5array_array; jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: PyObject *__pyx_type_5pysam_10libchtslib_HTSFile; jpayne@68: PyObject *__pyx_type_5pysam_10libchtslib_HFile; jpayne@68: #endif jpayne@68: PyTypeObject *__pyx_ptype_5pysam_10libchtslib_HTSFile; jpayne@68: PyTypeObject *__pyx_ptype_5pysam_10libchtslib_HFile; jpayne@68: PyObject *__pyx_n_u_ALIGNMENTS; jpayne@68: PyObject *__pyx_kp_u_An_error_occurred_while_applying; jpayne@68: PyObject *__pyx_n_s_AttributeError; jpayne@68: PyObject *__pyx_n_u_BAI; jpayne@68: PyObject *__pyx_n_u_BAM; jpayne@68: PyObject *__pyx_n_u_BCF; jpayne@68: PyObject *__pyx_n_u_BED; jpayne@68: PyObject *__pyx_n_u_BGZF; jpayne@68: PyObject *__pyx_n_u_BINARY_FORMAT; jpayne@68: PyObject *__pyx_n_s_CFalse; jpayne@68: PyObject *__pyx_n_u_CRAI; jpayne@68: PyObject *__pyx_n_u_CRAM; jpayne@68: PyObject *__pyx_n_u_CSI; jpayne@68: PyObject *__pyx_n_s_CTrue; jpayne@68: PyObject *__pyx_n_u_CUSTOM; jpayne@68: PyObject *__pyx_n_s_CallableValue; jpayne@68: PyObject *__pyx_n_s_CallableValue___bool; jpayne@68: PyObject *__pyx_n_s_CallableValue___call; jpayne@68: PyObject *__pyx_n_s_CallableValue___eq; jpayne@68: PyObject *__pyx_n_s_CallableValue___init; jpayne@68: PyObject *__pyx_n_s_CallableValue___ne; jpayne@68: PyObject *__pyx_n_s_CallableValue___nonzero; jpayne@68: PyObject *__pyx_kp_u_Cannot_create_hfile; jpayne@68: PyObject *__pyx_kp_u_Flushing; jpayne@68: PyObject *__pyx_n_u_GZI; jpayne@68: PyObject *__pyx_n_u_GZIP; jpayne@68: PyObject *__pyx_n_s_HFile; jpayne@68: PyObject *__pyx_n_u_HFile; jpayne@68: PyObject *__pyx_n_s_HFile___enter; jpayne@68: PyObject *__pyx_n_s_HFile___exit; jpayne@68: PyObject *__pyx_n_s_HFile___reduce_cython; jpayne@68: PyObject *__pyx_n_s_HFile___setstate_cython; jpayne@68: PyObject *__pyx_n_s_HFile_close; jpayne@68: PyObject *__pyx_n_s_HFile_fileno; jpayne@68: PyObject *__pyx_n_s_HFile_flush; jpayne@68: PyObject *__pyx_n_s_HFile_isatty; jpayne@68: PyObject *__pyx_n_s_HFile_read; jpayne@68: PyObject *__pyx_n_s_HFile_readable; jpayne@68: PyObject *__pyx_n_s_HFile_readall; jpayne@68: PyObject *__pyx_n_s_HFile_readinto; jpayne@68: PyObject *__pyx_n_s_HFile_readline; jpayne@68: PyObject *__pyx_n_s_HFile_readlines; jpayne@68: PyObject *__pyx_n_s_HFile_seek; jpayne@68: PyObject *__pyx_n_s_HFile_seekable; jpayne@68: PyObject *__pyx_n_s_HFile_tell; jpayne@68: PyObject *__pyx_n_s_HFile_truncate; jpayne@68: PyObject *__pyx_n_s_HFile_writable; jpayne@68: PyObject *__pyx_n_s_HFile_write; jpayne@68: PyObject *__pyx_n_s_HFile_writelines; jpayne@68: PyObject *__pyx_n_s_HTSFile; jpayne@68: PyObject *__pyx_n_u_HTSFile; jpayne@68: PyObject *__pyx_n_s_HTSFile___enter; jpayne@68: PyObject *__pyx_n_s_HTSFile___exit; jpayne@68: PyObject *__pyx_n_s_HTSFile___reduce_cython; jpayne@68: PyObject *__pyx_n_s_HTSFile___setstate_cython; jpayne@68: PyObject *__pyx_n_s_HTSFile_add_hts_options; jpayne@68: PyObject *__pyx_n_s_HTSFile_check_truncation; jpayne@68: PyObject *__pyx_n_s_HTSFile_close; jpayne@68: PyObject *__pyx_n_s_HTSFile_flush; jpayne@68: PyObject *__pyx_n_s_HTSFile_get_reference_name; jpayne@68: PyObject *__pyx_n_s_HTSFile_get_tid; jpayne@68: PyObject *__pyx_n_s_HTSFile_is_valid_reference_name; jpayne@68: PyObject *__pyx_n_s_HTSFile_is_valid_tid; jpayne@68: PyObject *__pyx_n_s_HTSFile_parse_region; jpayne@68: PyObject *__pyx_n_s_HTSFile_reset; jpayne@68: PyObject *__pyx_n_s_HTSFile_seek; jpayne@68: PyObject *__pyx_n_s_HTSFile_tell; jpayne@68: PyObject *__pyx_n_u_INDEX; jpayne@68: PyObject *__pyx_n_s_IOError; jpayne@68: PyObject *__pyx_kp_u_I_O_operation_on_closed_file; jpayne@68: PyObject *__pyx_n_s_IndexError; jpayne@68: PyObject *__pyx_kp_u_Invalid_format_option_specified; jpayne@68: PyObject *__pyx_n_s_MemoryError; jpayne@68: PyObject *__pyx_n_u_NONE; jpayne@68: PyObject *__pyx_n_s_NotImplementedError; jpayne@68: PyObject *__pyx_n_s_OSError; jpayne@68: PyObject *__pyx_n_s_OverflowError; jpayne@68: PyObject *__pyx_n_u_REGIONS; jpayne@68: PyObject *__pyx_n_s_RuntimeError; jpayne@68: PyObject *__pyx_n_u_SAM; jpayne@68: PyObject *__pyx_n_s_SEEK_SET; jpayne@68: PyObject *__pyx_n_s_StopIteration; jpayne@68: PyObject *__pyx_n_u_TBI; jpayne@68: PyObject *__pyx_n_u_TEXT_FORMAT; jpayne@68: PyObject *__pyx_n_s_TypeError; jpayne@68: PyObject *__pyx_n_u_UNKNOWN; jpayne@68: PyObject *__pyx_n_u_VARIANTS; jpayne@68: PyObject *__pyx_n_u_VCF; jpayne@68: PyObject *__pyx_n_s_ValueError; jpayne@68: PyObject *__pyx_kp_b__13; jpayne@68: PyObject *__pyx_kp_u__55; jpayne@68: PyObject *__pyx_kp_u__56; jpayne@68: PyObject *__pyx_n_s__58; jpayne@68: PyObject *__pyx_kp_u__58; jpayne@68: PyObject *__pyx_kp_u__59; jpayne@68: PyObject *__pyx_n_s__97; jpayne@68: PyObject *__pyx_n_s_add_hts_options; jpayne@68: PyObject *__pyx_n_s_all; jpayne@68: PyObject *__pyx_n_s_asyncio_coroutines; jpayne@68: PyObject *__pyx_n_b_b; jpayne@68: PyObject *__pyx_n_s_b; jpayne@68: PyObject *__pyx_n_s_bgzfp; jpayne@68: PyObject *__pyx_n_s_bool; jpayne@68: PyObject *__pyx_n_s_buf; jpayne@68: PyObject *__pyx_n_s_bytes_read; jpayne@68: PyObject *__pyx_n_b_c; jpayne@68: PyObject *__pyx_n_s_call; jpayne@68: PyObject *__pyx_n_s_check_truncation; jpayne@68: PyObject *__pyx_n_s_chunk_size; jpayne@68: PyObject *__pyx_n_s_class_getitem; jpayne@68: PyObject *__pyx_n_s_cline_in_traceback; jpayne@68: PyObject *__pyx_n_s_close; jpayne@68: PyObject *__pyx_n_s_closefd; jpayne@68: PyObject *__pyx_n_s_contig; jpayne@68: PyObject *__pyx_kp_u_contig_and_reference_should_not; jpayne@68: PyObject *__pyx_n_s_coord; jpayne@68: PyObject *__pyx_n_s_cpart; jpayne@68: PyObject *__pyx_n_s_dict; jpayne@68: PyObject *__pyx_kp_u_disable; jpayne@68: PyObject *__pyx_n_s_doc; jpayne@68: PyObject *__pyx_kp_u_enable; jpayne@68: PyObject *__pyx_n_s_end; jpayne@68: PyObject *__pyx_n_s_enter; jpayne@68: PyObject *__pyx_n_s_eq; jpayne@68: PyObject *__pyx_kp_u_error_checking_for_EOF_marker; jpayne@68: PyObject *__pyx_n_s_exc_type; jpayne@68: PyObject *__pyx_n_s_exc_value; jpayne@68: PyObject *__pyx_n_s_exit; jpayne@68: PyObject *__pyx_kp_u_failed; jpayne@68: PyObject *__pyx_kp_u_failed_to_close_HFile; jpayne@68: PyObject *__pyx_kp_u_failed_to_flush_HFile; jpayne@68: PyObject *__pyx_kp_u_failed_to_open_HFile; jpayne@68: PyObject *__pyx_kp_u_failed_to_read_HFile; jpayne@68: PyObject *__pyx_kp_u_fd; jpayne@68: PyObject *__pyx_n_s_fileno; jpayne@68: PyObject *__pyx_kp_u_fileno_not_available; jpayne@68: PyObject *__pyx_n_s_flush; jpayne@68: PyObject *__pyx_n_s_format; jpayne@68: PyObject *__pyx_n_s_format_option; jpayne@68: PyObject *__pyx_n_s_format_options; jpayne@68: PyObject *__pyx_n_s_fp; jpayne@68: PyObject *__pyx_kp_u_gc; jpayne@68: PyObject *__pyx_n_s_get_reference_name; jpayne@68: PyObject *__pyx_n_s_get_tid; jpayne@68: PyObject *__pyx_n_s_get_verbosity; jpayne@68: PyObject *__pyx_n_u_get_verbosity; jpayne@68: PyObject *__pyx_n_s_getstate; jpayne@68: PyObject *__pyx_n_s_got; jpayne@68: PyObject *__pyx_n_s_ignore_truncation; jpayne@68: PyObject *__pyx_n_s_import; jpayne@68: PyObject *__pyx_n_s_init; jpayne@68: PyObject *__pyx_n_s_init_subclass; jpayne@68: PyObject *__pyx_n_s_initializing; jpayne@68: PyObject *__pyx_kp_u_invalid_contig_s; jpayne@68: PyObject *__pyx_kp_u_invalid_coordinates_start_i_stop; jpayne@68: PyObject *__pyx_kp_u_invalid_tid; jpayne@68: PyObject *__pyx_n_s_io; jpayne@68: PyObject *__pyx_n_s_is_coroutine; jpayne@68: PyObject *__pyx_n_s_is_open; jpayne@68: PyObject *__pyx_n_s_is_valid_reference_name; jpayne@68: PyObject *__pyx_n_s_is_valid_tid; jpayne@68: PyObject *__pyx_n_s_isatty; jpayne@68: PyObject *__pyx_kp_u_isenabled; jpayne@68: PyObject *__pyx_n_s_join; jpayne@68: PyObject *__pyx_n_s_line; jpayne@68: PyObject *__pyx_n_s_lines; jpayne@68: PyObject *__pyx_n_s_main; jpayne@68: PyObject *__pyx_n_s_metaclass; jpayne@68: PyObject *__pyx_kp_u_metadata_not_available_on_closed; jpayne@68: PyObject *__pyx_n_s_mode; jpayne@68: PyObject *__pyx_n_s_module; jpayne@68: PyObject *__pyx_n_s_mro_entries; jpayne@68: PyObject *__pyx_n_s_msg; jpayne@68: PyObject *__pyx_n_s_mv; jpayne@68: PyObject *__pyx_n_s_name; jpayne@68: PyObject *__pyx_n_s_name_2; jpayne@68: PyObject *__pyx_n_s_ne; jpayne@68: PyObject *__pyx_kp_u_no_BGZF_EOF_marker_file_may_be_t; jpayne@68: PyObject *__pyx_kp_s_no_default___reduce___due_to_non; jpayne@68: PyObject *__pyx_n_s_nonzero; jpayne@68: PyObject *__pyx_n_s_object; jpayne@68: PyObject *__pyx_n_s_off; jpayne@68: PyObject *__pyx_n_s_offset; jpayne@68: PyObject *__pyx_kp_u_operation_on_closed_HFile; jpayne@68: PyObject *__pyx_n_s_opts; jpayne@68: PyObject *__pyx_n_s_os; jpayne@68: PyObject *__pyx_n_s_other; jpayne@68: PyObject *__pyx_n_s_parse_region; jpayne@68: PyObject *__pyx_n_s_part; jpayne@68: PyObject *__pyx_n_s_parts; jpayne@68: PyObject *__pyx_n_s_prepare; jpayne@68: PyObject *__pyx_n_s_pysam_libchtslib; jpayne@68: PyObject *__pyx_kp_s_pysam_libchtslib_pyx; jpayne@68: PyObject *__pyx_n_s_pyx_state; jpayne@68: PyObject *__pyx_n_s_pyx_vtable; jpayne@68: PyObject *__pyx_n_s_qualname; jpayne@68: PyObject *__pyx_n_u_r; jpayne@68: PyObject *__pyx_n_s_re; jpayne@68: PyObject *__pyx_n_s_read; jpayne@68: PyObject *__pyx_n_s_readable; jpayne@68: PyObject *__pyx_n_s_readall; jpayne@68: PyObject *__pyx_n_s_readinto; jpayne@68: PyObject *__pyx_n_s_readline; jpayne@68: PyObject *__pyx_n_s_readlines; jpayne@68: PyObject *__pyx_n_s_reduce; jpayne@68: PyObject *__pyx_n_s_reduce_cython; jpayne@68: PyObject *__pyx_n_s_reduce_ex; jpayne@68: PyObject *__pyx_n_s_reference; jpayne@68: PyObject *__pyx_n_s_region; jpayne@68: PyObject *__pyx_n_s_replace; jpayne@68: PyObject *__pyx_n_s_reset; jpayne@68: PyObject *__pyx_n_s_ret; jpayne@68: PyObject *__pyx_n_s_rstart; jpayne@68: PyObject *__pyx_n_s_rstop; jpayne@68: PyObject *__pyx_n_s_rtid; jpayne@68: PyObject *__pyx_n_s_rval; 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*__pyx_codeobj__38; jpayne@68: PyObject *__pyx_codeobj__40; jpayne@68: PyObject *__pyx_codeobj__42; jpayne@68: PyObject *__pyx_codeobj__45; jpayne@68: PyObject *__pyx_codeobj__50; jpayne@68: PyObject *__pyx_codeobj__52; jpayne@68: PyObject *__pyx_codeobj__60; jpayne@68: PyObject *__pyx_codeobj__61; jpayne@68: PyObject *__pyx_codeobj__62; jpayne@68: PyObject *__pyx_codeobj__63; jpayne@68: PyObject *__pyx_codeobj__64; jpayne@68: PyObject *__pyx_codeobj__65; jpayne@68: } __pyx_mstate; jpayne@68: jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #ifdef __cplusplus jpayne@68: namespace { jpayne@68: extern struct PyModuleDef __pyx_moduledef; jpayne@68: } /* anonymous namespace */ jpayne@68: #else jpayne@68: static struct PyModuleDef __pyx_moduledef; jpayne@68: #endif jpayne@68: jpayne@68: #define __pyx_mstate(o) ((__pyx_mstate *)__Pyx_PyModule_GetState(o)) jpayne@68: jpayne@68: #define __pyx_mstate_global (__pyx_mstate(PyState_FindModule(&__pyx_moduledef))) jpayne@68: jpayne@68: #define 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Py_CLEAR(clear_module_state->__pyx_CyFunctionType); jpayne@68: #endif jpayne@68: #ifdef __Pyx_FusedFunction_USED jpayne@68: Py_CLEAR(clear_module_state->__pyx_FusedFunctionType); jpayne@68: #endif jpayne@68: Py_CLEAR(clear_module_state->__pyx_ptype_7cpython_4type_type); jpayne@68: Py_CLEAR(clear_module_state->__pyx_ptype_7cpython_4bool_bool); jpayne@68: Py_CLEAR(clear_module_state->__pyx_ptype_7cpython_7complex_complex); jpayne@68: Py_CLEAR(clear_module_state->__pyx_ptype_7cpython_5array_array); jpayne@68: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_10libchtslib_HTSFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_type_5pysam_10libchtslib_HTSFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_10libchtslib_HFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_type_5pysam_10libchtslib_HFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_ALIGNMENTS); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_An_error_occurred_while_applying); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_AttributeError); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_BAI); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_BAM); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_BCF); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_BED); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_BGZF); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_BINARY_FORMAT); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_CFalse); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_CRAI); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_CRAM); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_CSI); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_CTrue); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_CUSTOM); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_CallableValue); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_CallableValue___bool); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_CallableValue___call); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_CallableValue___eq); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_CallableValue___init); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_CallableValue___ne); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_CallableValue___nonzero); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_Cannot_create_hfile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_Flushing); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_GZI); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_GZIP); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_HFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile___enter); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile___exit); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile___reduce_cython); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile___setstate_cython); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile_close); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile_fileno); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile_flush); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile_isatty); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile_read); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile_readable); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile_readall); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile_readinto); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile_readline); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile_readlines); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile_seek); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile_seekable); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile_tell); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile_truncate); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile_writable); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile_write); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HFile_writelines); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_HTSFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile___enter); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile___exit); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile___reduce_cython); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile___setstate_cython); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_add_hts_options); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_check_truncation); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_close); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_flush); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_get_reference_name); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_get_tid); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_is_valid_reference_name); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_is_valid_tid); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_parse_region); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_reset); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_seek); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_tell); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_INDEX); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_IOError); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_I_O_operation_on_closed_file); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_IndexError); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_Invalid_format_option_specified); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_MemoryError); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_NONE); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_NotImplementedError); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_OSError); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_OverflowError); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_REGIONS); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_RuntimeError); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_SAM); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_SEEK_SET); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_StopIteration); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_TBI); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_TEXT_FORMAT); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_TypeError); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_UNKNOWN); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_VARIANTS); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_VCF); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_ValueError); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_b__13); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u__55); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u__56); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s__58); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u__58); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u__59); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s__97); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_add_hts_options); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_all); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_asyncio_coroutines); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_b_b); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_b); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_bgzfp); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_bool); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_buf); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_bytes_read); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_b_c); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_call); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_check_truncation); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_chunk_size); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_class_getitem); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_cline_in_traceback); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_close); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_closefd); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_contig); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_contig_and_reference_should_not); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_coord); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_cpart); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_dict); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_disable); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_doc); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_enable); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_end); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_enter); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_eq); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_error_checking_for_EOF_marker); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_exc_type); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_exc_value); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_exit); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_failed); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_failed_to_close_HFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_failed_to_flush_HFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_failed_to_open_HFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_failed_to_read_HFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_fd); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_fileno); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_fileno_not_available); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_flush); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_format); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_format_option); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_format_options); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_fp); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_gc); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_get_reference_name); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_get_tid); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_get_verbosity); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_get_verbosity); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_getstate); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_got); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_ignore_truncation); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_import); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_init); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_init_subclass); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_initializing); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_invalid_contig_s); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_invalid_coordinates_start_i_stop); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_invalid_tid); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_io); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_is_coroutine); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_is_open); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_is_valid_reference_name); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_is_valid_tid); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_isatty); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_isenabled); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_join); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_line); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_lines); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_main); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_metaclass); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_metadata_not_available_on_closed); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_mode); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_module); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_mro_entries); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_msg); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_mv); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_name); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_name_2); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_ne); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_no_BGZF_EOF_marker_file_may_be_t); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_s_no_default___reduce___due_to_non); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_nonzero); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_object); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_off); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_offset); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_operation_on_closed_HFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_opts); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_os); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_other); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_parse_region); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_part); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_parts); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_prepare); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_pysam_libchtslib); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_s_pysam_libchtslib_pyx); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_pyx_state); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_pyx_vtable); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_qualname); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_r); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_re); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_read); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_readable); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_readall); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_readinto); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_readline); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_readlines); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_reduce); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_reduce_cython); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_reduce_ex); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_reference); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_region); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_replace); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_reset); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_ret); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_rstart); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_rstop); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_rtid); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_rval); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_seek); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_seek_failed_on_HFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_seek_not_available_in_streams); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_seek_not_implemented_in_files_co); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_seekable); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_self); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_s_self_fp_cannot_be_converted_to_a); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_set_name); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_set_verbosity); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_set_verbosity); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_setstate); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_setstate_cython); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_size); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_spec); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_split); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_start); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_start_out_of_range_i); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_stop); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_stop_and_end_should_not_both_be); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_stop_out_of_range_i); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_s_stringsource); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_super); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_tb); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_tell); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_tell_failed_on_HFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_tell_not_available_in_streams); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_test); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_tid); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_traceback); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_truncate); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_type); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_value); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_verbosity); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_u_w); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_warn); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_warnings); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_whence); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_writable); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_write); jpayne@68: Py_CLEAR(clear_module_state->__pyx_kp_u_write_failed_on_HFile); jpayne@68: Py_CLEAR(clear_module_state->__pyx_n_s_writelines); jpayne@68: Py_CLEAR(clear_module_state->__pyx_int_0); jpayne@68: Py_CLEAR(clear_module_state->__pyx_int_1); jpayne@68: Py_CLEAR(clear_module_state->__pyx_int_neg_1); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj_); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__5); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__6); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__39); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__43); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__44); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__46); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__47); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__48); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__49); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__51); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__53); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__54); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__57); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__66); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__67); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__68); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__69); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__70); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__71); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__72); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__73); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__74); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__75); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__76); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__77); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__78); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__79); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__80); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__81); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__82); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__83); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__84); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__85); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__86); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__87); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__88); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__89); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__90); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__91); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__92); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__93); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__94); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__95); jpayne@68: Py_CLEAR(clear_module_state->__pyx_tuple__96); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__2); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__3); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__4); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__7); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__8); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__9); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__10); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__11); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__12); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__14); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__15); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__16); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__17); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__19); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__20); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__21); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__22); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__23); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__24); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__25); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__26); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__27); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__28); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__29); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__30); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__31); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__32); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__33); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__34); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__35); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__36); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__37); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__38); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__40); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__42); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__45); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__50); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__52); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__60); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__61); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__62); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__63); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__64); jpayne@68: Py_CLEAR(clear_module_state->__pyx_codeobj__65); jpayne@68: return 0; jpayne@68: } jpayne@68: #endif jpayne@68: /* #### Code section: module_state_traverse ### */ jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: static int __pyx_m_traverse(PyObject *m, visitproc visit, void *arg) { jpayne@68: __pyx_mstate *traverse_module_state = __pyx_mstate(m); jpayne@68: if (!traverse_module_state) return 0; jpayne@68: Py_VISIT(traverse_module_state->__pyx_d); jpayne@68: Py_VISIT(traverse_module_state->__pyx_b); jpayne@68: Py_VISIT(traverse_module_state->__pyx_cython_runtime); jpayne@68: Py_VISIT(traverse_module_state->__pyx_empty_tuple); jpayne@68: Py_VISIT(traverse_module_state->__pyx_empty_bytes); jpayne@68: Py_VISIT(traverse_module_state->__pyx_empty_unicode); jpayne@68: #ifdef __Pyx_CyFunction_USED jpayne@68: Py_VISIT(traverse_module_state->__pyx_CyFunctionType); jpayne@68: #endif jpayne@68: #ifdef __Pyx_FusedFunction_USED jpayne@68: Py_VISIT(traverse_module_state->__pyx_FusedFunctionType); jpayne@68: #endif jpayne@68: Py_VISIT(traverse_module_state->__pyx_ptype_7cpython_4type_type); jpayne@68: Py_VISIT(traverse_module_state->__pyx_ptype_7cpython_4bool_bool); jpayne@68: Py_VISIT(traverse_module_state->__pyx_ptype_7cpython_7complex_complex); jpayne@68: Py_VISIT(traverse_module_state->__pyx_ptype_7cpython_5array_array); jpayne@68: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_10libchtslib_HTSFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_type_5pysam_10libchtslib_HTSFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_10libchtslib_HFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_type_5pysam_10libchtslib_HFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_ALIGNMENTS); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_An_error_occurred_while_applying); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_AttributeError); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_BAI); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_BAM); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_BCF); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_BED); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_BGZF); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_BINARY_FORMAT); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_CFalse); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_CRAI); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_CRAM); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_CSI); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_CTrue); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_CUSTOM); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_CallableValue); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_CallableValue___bool); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_CallableValue___call); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_CallableValue___eq); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_CallableValue___init); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_CallableValue___ne); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_CallableValue___nonzero); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_Cannot_create_hfile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_Flushing); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_GZI); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_GZIP); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_HFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile___enter); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile___exit); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile___reduce_cython); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile___setstate_cython); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile_close); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile_fileno); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile_flush); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile_isatty); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile_read); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile_readable); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile_readall); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile_readinto); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile_readline); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile_readlines); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile_seek); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile_seekable); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile_tell); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile_truncate); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile_writable); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile_write); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HFile_writelines); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_HTSFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile___enter); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile___exit); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile___reduce_cython); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile___setstate_cython); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_add_hts_options); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_check_truncation); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_close); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_flush); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_get_reference_name); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_get_tid); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_is_valid_reference_name); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_is_valid_tid); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_parse_region); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_reset); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_seek); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_tell); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_INDEX); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_IOError); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_I_O_operation_on_closed_file); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_IndexError); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_Invalid_format_option_specified); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_MemoryError); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_NONE); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_NotImplementedError); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_OSError); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_OverflowError); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_REGIONS); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_RuntimeError); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_SAM); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_SEEK_SET); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_StopIteration); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_TBI); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_TEXT_FORMAT); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_TypeError); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_UNKNOWN); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_VARIANTS); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_VCF); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_ValueError); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_b__13); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u__55); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u__56); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s__58); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u__58); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u__59); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s__97); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_add_hts_options); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_all); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_asyncio_coroutines); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_b_b); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_b); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_bgzfp); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_bool); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_buf); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_bytes_read); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_b_c); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_call); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_check_truncation); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_chunk_size); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_class_getitem); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_cline_in_traceback); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_close); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_closefd); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_contig); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_contig_and_reference_should_not); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_coord); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_cpart); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_dict); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_disable); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_doc); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_enable); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_end); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_enter); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_eq); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_error_checking_for_EOF_marker); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_exc_type); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_exc_value); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_exit); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_failed); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_failed_to_close_HFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_failed_to_flush_HFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_failed_to_open_HFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_failed_to_read_HFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_fd); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_fileno); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_fileno_not_available); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_flush); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_format); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_format_option); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_format_options); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_fp); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_gc); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_get_reference_name); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_get_tid); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_get_verbosity); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_get_verbosity); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_getstate); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_got); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_ignore_truncation); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_import); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_init); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_init_subclass); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_initializing); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_invalid_contig_s); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_invalid_coordinates_start_i_stop); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_invalid_tid); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_io); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_is_coroutine); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_is_open); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_is_valid_reference_name); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_is_valid_tid); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_isatty); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_isenabled); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_join); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_line); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_lines); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_main); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_metaclass); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_metadata_not_available_on_closed); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_mode); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_module); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_mro_entries); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_msg); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_mv); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_name); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_name_2); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_ne); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_no_BGZF_EOF_marker_file_may_be_t); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_s_no_default___reduce___due_to_non); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_nonzero); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_object); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_off); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_offset); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_operation_on_closed_HFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_opts); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_os); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_other); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_parse_region); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_part); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_parts); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_prepare); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_pysam_libchtslib); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_s_pysam_libchtslib_pyx); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_pyx_state); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_pyx_vtable); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_qualname); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_r); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_re); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_read); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_readable); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_readall); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_readinto); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_readline); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_readlines); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_reduce); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_reduce_cython); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_reduce_ex); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_reference); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_region); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_replace); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_reset); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_ret); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_rstart); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_rstop); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_rtid); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_rval); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_seek); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_seek_failed_on_HFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_seek_not_available_in_streams); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_seek_not_implemented_in_files_co); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_seekable); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_self); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_s_self_fp_cannot_be_converted_to_a); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_set_name); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_set_verbosity); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_set_verbosity); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_setstate); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_setstate_cython); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_size); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_spec); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_split); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_start); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_start_out_of_range_i); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_stop); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_stop_and_end_should_not_both_be); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_stop_out_of_range_i); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_s_stringsource); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_super); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_tb); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_tell); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_tell_failed_on_HFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_tell_not_available_in_streams); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_test); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_tid); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_traceback); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_truncate); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_type); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_value); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_verbosity); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_u_w); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_warn); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_warnings); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_whence); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_writable); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_write); jpayne@68: Py_VISIT(traverse_module_state->__pyx_kp_u_write_failed_on_HFile); jpayne@68: Py_VISIT(traverse_module_state->__pyx_n_s_writelines); jpayne@68: Py_VISIT(traverse_module_state->__pyx_int_0); jpayne@68: Py_VISIT(traverse_module_state->__pyx_int_1); jpayne@68: Py_VISIT(traverse_module_state->__pyx_int_neg_1); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj_); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__5); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__6); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__39); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__43); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__44); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__46); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__47); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__48); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__49); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__51); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__53); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__54); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__57); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__66); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__67); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__68); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__69); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__70); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__71); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__72); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__73); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__74); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__75); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__76); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__77); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__78); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__79); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__80); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__81); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__82); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__83); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__84); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__85); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__86); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__87); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__88); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__89); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__90); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__91); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__92); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__93); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__94); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__95); jpayne@68: Py_VISIT(traverse_module_state->__pyx_tuple__96); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__2); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__3); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__4); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__7); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__8); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__9); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__10); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__11); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__12); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__14); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__15); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__16); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__17); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__19); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__20); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__21); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__22); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__23); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__24); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__25); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__26); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__27); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__28); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__29); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__30); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__31); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__32); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__33); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__34); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__35); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__36); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__37); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__38); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__40); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__42); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__45); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__50); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__52); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__60); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__61); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__62); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__63); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__64); jpayne@68: Py_VISIT(traverse_module_state->__pyx_codeobj__65); jpayne@68: return 0; jpayne@68: } jpayne@68: #endif jpayne@68: /* #### Code section: module_state_defines ### */ jpayne@68: #define __pyx_d __pyx_mstate_global->__pyx_d jpayne@68: #define __pyx_b __pyx_mstate_global->__pyx_b jpayne@68: #define __pyx_cython_runtime __pyx_mstate_global->__pyx_cython_runtime jpayne@68: #define __pyx_empty_tuple __pyx_mstate_global->__pyx_empty_tuple jpayne@68: #define __pyx_empty_bytes __pyx_mstate_global->__pyx_empty_bytes jpayne@68: #define __pyx_empty_unicode __pyx_mstate_global->__pyx_empty_unicode jpayne@68: #ifdef __Pyx_CyFunction_USED jpayne@68: #define __pyx_CyFunctionType __pyx_mstate_global->__pyx_CyFunctionType jpayne@68: #endif jpayne@68: #ifdef __Pyx_FusedFunction_USED jpayne@68: #define __pyx_FusedFunctionType __pyx_mstate_global->__pyx_FusedFunctionType jpayne@68: #endif jpayne@68: #ifdef __Pyx_Generator_USED jpayne@68: #define __pyx_GeneratorType __pyx_mstate_global->__pyx_GeneratorType jpayne@68: #endif jpayne@68: #ifdef __Pyx_IterableCoroutine_USED jpayne@68: #define __pyx_IterableCoroutineType __pyx_mstate_global->__pyx_IterableCoroutineType jpayne@68: #endif jpayne@68: #ifdef __Pyx_Coroutine_USED jpayne@68: #define __pyx_CoroutineAwaitType __pyx_mstate_global->__pyx_CoroutineAwaitType jpayne@68: #endif jpayne@68: #ifdef __Pyx_Coroutine_USED jpayne@68: #define __pyx_CoroutineType __pyx_mstate_global->__pyx_CoroutineType jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #define __pyx_ptype_7cpython_4type_type __pyx_mstate_global->__pyx_ptype_7cpython_4type_type jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #define __pyx_ptype_7cpython_4bool_bool __pyx_mstate_global->__pyx_ptype_7cpython_4bool_bool jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #define __pyx_ptype_7cpython_7complex_complex __pyx_mstate_global->__pyx_ptype_7cpython_7complex_complex jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #define __pyx_ptype_7cpython_5array_array __pyx_mstate_global->__pyx_ptype_7cpython_5array_array jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #endif jpayne@68: #if CYTHON_USE_MODULE_STATE jpayne@68: #define __pyx_type_5pysam_10libchtslib_HTSFile __pyx_mstate_global->__pyx_type_5pysam_10libchtslib_HTSFile jpayne@68: #define __pyx_type_5pysam_10libchtslib_HFile __pyx_mstate_global->__pyx_type_5pysam_10libchtslib_HFile jpayne@68: #endif jpayne@68: #define __pyx_ptype_5pysam_10libchtslib_HTSFile __pyx_mstate_global->__pyx_ptype_5pysam_10libchtslib_HTSFile jpayne@68: #define __pyx_ptype_5pysam_10libchtslib_HFile __pyx_mstate_global->__pyx_ptype_5pysam_10libchtslib_HFile jpayne@68: #define __pyx_n_u_ALIGNMENTS __pyx_mstate_global->__pyx_n_u_ALIGNMENTS jpayne@68: #define __pyx_kp_u_An_error_occurred_while_applying __pyx_mstate_global->__pyx_kp_u_An_error_occurred_while_applying jpayne@68: #define __pyx_n_s_AttributeError __pyx_mstate_global->__pyx_n_s_AttributeError jpayne@68: #define __pyx_n_u_BAI __pyx_mstate_global->__pyx_n_u_BAI jpayne@68: #define __pyx_n_u_BAM __pyx_mstate_global->__pyx_n_u_BAM jpayne@68: #define __pyx_n_u_BCF __pyx_mstate_global->__pyx_n_u_BCF jpayne@68: #define __pyx_n_u_BED __pyx_mstate_global->__pyx_n_u_BED jpayne@68: #define __pyx_n_u_BGZF __pyx_mstate_global->__pyx_n_u_BGZF jpayne@68: #define __pyx_n_u_BINARY_FORMAT __pyx_mstate_global->__pyx_n_u_BINARY_FORMAT jpayne@68: #define __pyx_n_s_CFalse __pyx_mstate_global->__pyx_n_s_CFalse jpayne@68: #define __pyx_n_u_CRAI __pyx_mstate_global->__pyx_n_u_CRAI jpayne@68: #define __pyx_n_u_CRAM __pyx_mstate_global->__pyx_n_u_CRAM jpayne@68: #define __pyx_n_u_CSI __pyx_mstate_global->__pyx_n_u_CSI jpayne@68: #define __pyx_n_s_CTrue __pyx_mstate_global->__pyx_n_s_CTrue jpayne@68: #define __pyx_n_u_CUSTOM __pyx_mstate_global->__pyx_n_u_CUSTOM jpayne@68: #define __pyx_n_s_CallableValue __pyx_mstate_global->__pyx_n_s_CallableValue jpayne@68: #define __pyx_n_s_CallableValue___bool __pyx_mstate_global->__pyx_n_s_CallableValue___bool jpayne@68: #define __pyx_n_s_CallableValue___call __pyx_mstate_global->__pyx_n_s_CallableValue___call jpayne@68: #define __pyx_n_s_CallableValue___eq __pyx_mstate_global->__pyx_n_s_CallableValue___eq jpayne@68: #define __pyx_n_s_CallableValue___init __pyx_mstate_global->__pyx_n_s_CallableValue___init jpayne@68: #define __pyx_n_s_CallableValue___ne __pyx_mstate_global->__pyx_n_s_CallableValue___ne jpayne@68: #define __pyx_n_s_CallableValue___nonzero __pyx_mstate_global->__pyx_n_s_CallableValue___nonzero jpayne@68: #define __pyx_kp_u_Cannot_create_hfile __pyx_mstate_global->__pyx_kp_u_Cannot_create_hfile jpayne@68: #define __pyx_kp_u_Flushing __pyx_mstate_global->__pyx_kp_u_Flushing jpayne@68: #define __pyx_n_u_GZI __pyx_mstate_global->__pyx_n_u_GZI jpayne@68: #define __pyx_n_u_GZIP __pyx_mstate_global->__pyx_n_u_GZIP jpayne@68: #define __pyx_n_s_HFile __pyx_mstate_global->__pyx_n_s_HFile jpayne@68: #define __pyx_n_u_HFile __pyx_mstate_global->__pyx_n_u_HFile jpayne@68: #define __pyx_n_s_HFile___enter __pyx_mstate_global->__pyx_n_s_HFile___enter jpayne@68: #define __pyx_n_s_HFile___exit __pyx_mstate_global->__pyx_n_s_HFile___exit jpayne@68: #define __pyx_n_s_HFile___reduce_cython __pyx_mstate_global->__pyx_n_s_HFile___reduce_cython jpayne@68: #define __pyx_n_s_HFile___setstate_cython __pyx_mstate_global->__pyx_n_s_HFile___setstate_cython jpayne@68: #define __pyx_n_s_HFile_close __pyx_mstate_global->__pyx_n_s_HFile_close jpayne@68: #define __pyx_n_s_HFile_fileno __pyx_mstate_global->__pyx_n_s_HFile_fileno jpayne@68: #define __pyx_n_s_HFile_flush __pyx_mstate_global->__pyx_n_s_HFile_flush jpayne@68: #define __pyx_n_s_HFile_isatty __pyx_mstate_global->__pyx_n_s_HFile_isatty jpayne@68: #define __pyx_n_s_HFile_read __pyx_mstate_global->__pyx_n_s_HFile_read jpayne@68: #define __pyx_n_s_HFile_readable __pyx_mstate_global->__pyx_n_s_HFile_readable jpayne@68: #define __pyx_n_s_HFile_readall __pyx_mstate_global->__pyx_n_s_HFile_readall jpayne@68: #define __pyx_n_s_HFile_readinto __pyx_mstate_global->__pyx_n_s_HFile_readinto jpayne@68: #define __pyx_n_s_HFile_readline __pyx_mstate_global->__pyx_n_s_HFile_readline jpayne@68: #define __pyx_n_s_HFile_readlines __pyx_mstate_global->__pyx_n_s_HFile_readlines jpayne@68: #define __pyx_n_s_HFile_seek __pyx_mstate_global->__pyx_n_s_HFile_seek jpayne@68: #define __pyx_n_s_HFile_seekable __pyx_mstate_global->__pyx_n_s_HFile_seekable jpayne@68: #define __pyx_n_s_HFile_tell __pyx_mstate_global->__pyx_n_s_HFile_tell jpayne@68: #define __pyx_n_s_HFile_truncate __pyx_mstate_global->__pyx_n_s_HFile_truncate jpayne@68: #define __pyx_n_s_HFile_writable __pyx_mstate_global->__pyx_n_s_HFile_writable jpayne@68: #define __pyx_n_s_HFile_write __pyx_mstate_global->__pyx_n_s_HFile_write jpayne@68: #define __pyx_n_s_HFile_writelines __pyx_mstate_global->__pyx_n_s_HFile_writelines jpayne@68: #define __pyx_n_s_HTSFile __pyx_mstate_global->__pyx_n_s_HTSFile jpayne@68: #define __pyx_n_u_HTSFile __pyx_mstate_global->__pyx_n_u_HTSFile jpayne@68: #define __pyx_n_s_HTSFile___enter __pyx_mstate_global->__pyx_n_s_HTSFile___enter jpayne@68: #define __pyx_n_s_HTSFile___exit __pyx_mstate_global->__pyx_n_s_HTSFile___exit jpayne@68: #define __pyx_n_s_HTSFile___reduce_cython __pyx_mstate_global->__pyx_n_s_HTSFile___reduce_cython jpayne@68: #define __pyx_n_s_HTSFile___setstate_cython __pyx_mstate_global->__pyx_n_s_HTSFile___setstate_cython jpayne@68: #define __pyx_n_s_HTSFile_add_hts_options __pyx_mstate_global->__pyx_n_s_HTSFile_add_hts_options jpayne@68: #define __pyx_n_s_HTSFile_check_truncation __pyx_mstate_global->__pyx_n_s_HTSFile_check_truncation jpayne@68: #define __pyx_n_s_HTSFile_close __pyx_mstate_global->__pyx_n_s_HTSFile_close jpayne@68: #define __pyx_n_s_HTSFile_flush __pyx_mstate_global->__pyx_n_s_HTSFile_flush jpayne@68: #define __pyx_n_s_HTSFile_get_reference_name __pyx_mstate_global->__pyx_n_s_HTSFile_get_reference_name jpayne@68: #define __pyx_n_s_HTSFile_get_tid __pyx_mstate_global->__pyx_n_s_HTSFile_get_tid jpayne@68: #define __pyx_n_s_HTSFile_is_valid_reference_name __pyx_mstate_global->__pyx_n_s_HTSFile_is_valid_reference_name jpayne@68: #define __pyx_n_s_HTSFile_is_valid_tid __pyx_mstate_global->__pyx_n_s_HTSFile_is_valid_tid jpayne@68: #define __pyx_n_s_HTSFile_parse_region __pyx_mstate_global->__pyx_n_s_HTSFile_parse_region jpayne@68: #define __pyx_n_s_HTSFile_reset __pyx_mstate_global->__pyx_n_s_HTSFile_reset jpayne@68: #define __pyx_n_s_HTSFile_seek __pyx_mstate_global->__pyx_n_s_HTSFile_seek jpayne@68: #define __pyx_n_s_HTSFile_tell __pyx_mstate_global->__pyx_n_s_HTSFile_tell jpayne@68: #define __pyx_n_u_INDEX __pyx_mstate_global->__pyx_n_u_INDEX jpayne@68: #define __pyx_n_s_IOError __pyx_mstate_global->__pyx_n_s_IOError jpayne@68: #define __pyx_kp_u_I_O_operation_on_closed_file __pyx_mstate_global->__pyx_kp_u_I_O_operation_on_closed_file jpayne@68: #define __pyx_n_s_IndexError __pyx_mstate_global->__pyx_n_s_IndexError jpayne@68: #define __pyx_kp_u_Invalid_format_option_specified __pyx_mstate_global->__pyx_kp_u_Invalid_format_option_specified jpayne@68: #define __pyx_n_s_MemoryError __pyx_mstate_global->__pyx_n_s_MemoryError jpayne@68: #define __pyx_n_u_NONE __pyx_mstate_global->__pyx_n_u_NONE jpayne@68: #define __pyx_n_s_NotImplementedError __pyx_mstate_global->__pyx_n_s_NotImplementedError jpayne@68: #define __pyx_n_s_OSError __pyx_mstate_global->__pyx_n_s_OSError jpayne@68: #define __pyx_n_s_OverflowError __pyx_mstate_global->__pyx_n_s_OverflowError jpayne@68: #define __pyx_n_u_REGIONS __pyx_mstate_global->__pyx_n_u_REGIONS jpayne@68: #define __pyx_n_s_RuntimeError __pyx_mstate_global->__pyx_n_s_RuntimeError jpayne@68: #define __pyx_n_u_SAM __pyx_mstate_global->__pyx_n_u_SAM jpayne@68: #define __pyx_n_s_SEEK_SET __pyx_mstate_global->__pyx_n_s_SEEK_SET jpayne@68: #define __pyx_n_s_StopIteration __pyx_mstate_global->__pyx_n_s_StopIteration jpayne@68: #define __pyx_n_u_TBI __pyx_mstate_global->__pyx_n_u_TBI jpayne@68: #define __pyx_n_u_TEXT_FORMAT __pyx_mstate_global->__pyx_n_u_TEXT_FORMAT jpayne@68: #define __pyx_n_s_TypeError __pyx_mstate_global->__pyx_n_s_TypeError jpayne@68: #define __pyx_n_u_UNKNOWN __pyx_mstate_global->__pyx_n_u_UNKNOWN jpayne@68: #define __pyx_n_u_VARIANTS __pyx_mstate_global->__pyx_n_u_VARIANTS jpayne@68: #define __pyx_n_u_VCF __pyx_mstate_global->__pyx_n_u_VCF jpayne@68: #define __pyx_n_s_ValueError __pyx_mstate_global->__pyx_n_s_ValueError jpayne@68: #define __pyx_kp_b__13 __pyx_mstate_global->__pyx_kp_b__13 jpayne@68: #define __pyx_kp_u__55 __pyx_mstate_global->__pyx_kp_u__55 jpayne@68: #define __pyx_kp_u__56 __pyx_mstate_global->__pyx_kp_u__56 jpayne@68: #define __pyx_n_s__58 __pyx_mstate_global->__pyx_n_s__58 jpayne@68: #define __pyx_kp_u__58 __pyx_mstate_global->__pyx_kp_u__58 jpayne@68: #define __pyx_kp_u__59 __pyx_mstate_global->__pyx_kp_u__59 jpayne@68: #define __pyx_n_s__97 __pyx_mstate_global->__pyx_n_s__97 jpayne@68: #define __pyx_n_s_add_hts_options __pyx_mstate_global->__pyx_n_s_add_hts_options jpayne@68: #define __pyx_n_s_all __pyx_mstate_global->__pyx_n_s_all jpayne@68: #define __pyx_n_s_asyncio_coroutines __pyx_mstate_global->__pyx_n_s_asyncio_coroutines jpayne@68: #define __pyx_n_b_b __pyx_mstate_global->__pyx_n_b_b jpayne@68: #define __pyx_n_s_b __pyx_mstate_global->__pyx_n_s_b jpayne@68: #define __pyx_n_s_bgzfp __pyx_mstate_global->__pyx_n_s_bgzfp jpayne@68: #define __pyx_n_s_bool __pyx_mstate_global->__pyx_n_s_bool jpayne@68: #define __pyx_n_s_buf __pyx_mstate_global->__pyx_n_s_buf jpayne@68: #define __pyx_n_s_bytes_read __pyx_mstate_global->__pyx_n_s_bytes_read jpayne@68: #define __pyx_n_b_c __pyx_mstate_global->__pyx_n_b_c jpayne@68: #define __pyx_n_s_call __pyx_mstate_global->__pyx_n_s_call jpayne@68: #define __pyx_n_s_check_truncation __pyx_mstate_global->__pyx_n_s_check_truncation jpayne@68: #define __pyx_n_s_chunk_size __pyx_mstate_global->__pyx_n_s_chunk_size jpayne@68: #define __pyx_n_s_class_getitem __pyx_mstate_global->__pyx_n_s_class_getitem jpayne@68: #define __pyx_n_s_cline_in_traceback __pyx_mstate_global->__pyx_n_s_cline_in_traceback jpayne@68: #define __pyx_n_s_close __pyx_mstate_global->__pyx_n_s_close jpayne@68: #define __pyx_n_s_closefd __pyx_mstate_global->__pyx_n_s_closefd jpayne@68: #define __pyx_n_s_contig __pyx_mstate_global->__pyx_n_s_contig jpayne@68: #define __pyx_kp_u_contig_and_reference_should_not __pyx_mstate_global->__pyx_kp_u_contig_and_reference_should_not jpayne@68: #define __pyx_n_s_coord __pyx_mstate_global->__pyx_n_s_coord jpayne@68: #define __pyx_n_s_cpart __pyx_mstate_global->__pyx_n_s_cpart jpayne@68: #define __pyx_n_s_dict __pyx_mstate_global->__pyx_n_s_dict jpayne@68: #define __pyx_kp_u_disable __pyx_mstate_global->__pyx_kp_u_disable jpayne@68: #define __pyx_n_s_doc __pyx_mstate_global->__pyx_n_s_doc jpayne@68: #define __pyx_kp_u_enable __pyx_mstate_global->__pyx_kp_u_enable jpayne@68: #define __pyx_n_s_end __pyx_mstate_global->__pyx_n_s_end jpayne@68: #define __pyx_n_s_enter __pyx_mstate_global->__pyx_n_s_enter jpayne@68: #define __pyx_n_s_eq __pyx_mstate_global->__pyx_n_s_eq jpayne@68: #define __pyx_kp_u_error_checking_for_EOF_marker __pyx_mstate_global->__pyx_kp_u_error_checking_for_EOF_marker jpayne@68: #define __pyx_n_s_exc_type __pyx_mstate_global->__pyx_n_s_exc_type jpayne@68: #define __pyx_n_s_exc_value __pyx_mstate_global->__pyx_n_s_exc_value jpayne@68: #define __pyx_n_s_exit __pyx_mstate_global->__pyx_n_s_exit jpayne@68: #define __pyx_kp_u_failed __pyx_mstate_global->__pyx_kp_u_failed jpayne@68: #define __pyx_kp_u_failed_to_close_HFile __pyx_mstate_global->__pyx_kp_u_failed_to_close_HFile jpayne@68: #define __pyx_kp_u_failed_to_flush_HFile __pyx_mstate_global->__pyx_kp_u_failed_to_flush_HFile jpayne@68: #define __pyx_kp_u_failed_to_open_HFile __pyx_mstate_global->__pyx_kp_u_failed_to_open_HFile jpayne@68: #define __pyx_kp_u_failed_to_read_HFile __pyx_mstate_global->__pyx_kp_u_failed_to_read_HFile jpayne@68: #define __pyx_kp_u_fd __pyx_mstate_global->__pyx_kp_u_fd jpayne@68: #define __pyx_n_s_fileno __pyx_mstate_global->__pyx_n_s_fileno jpayne@68: #define __pyx_kp_u_fileno_not_available __pyx_mstate_global->__pyx_kp_u_fileno_not_available jpayne@68: #define __pyx_n_s_flush __pyx_mstate_global->__pyx_n_s_flush jpayne@68: #define __pyx_n_s_format __pyx_mstate_global->__pyx_n_s_format jpayne@68: #define __pyx_n_s_format_option __pyx_mstate_global->__pyx_n_s_format_option jpayne@68: #define __pyx_n_s_format_options __pyx_mstate_global->__pyx_n_s_format_options jpayne@68: #define __pyx_n_s_fp __pyx_mstate_global->__pyx_n_s_fp jpayne@68: #define __pyx_kp_u_gc __pyx_mstate_global->__pyx_kp_u_gc jpayne@68: #define __pyx_n_s_get_reference_name __pyx_mstate_global->__pyx_n_s_get_reference_name jpayne@68: #define __pyx_n_s_get_tid __pyx_mstate_global->__pyx_n_s_get_tid jpayne@68: #define __pyx_n_s_get_verbosity __pyx_mstate_global->__pyx_n_s_get_verbosity jpayne@68: #define __pyx_n_u_get_verbosity __pyx_mstate_global->__pyx_n_u_get_verbosity jpayne@68: #define __pyx_n_s_getstate __pyx_mstate_global->__pyx_n_s_getstate jpayne@68: #define __pyx_n_s_got __pyx_mstate_global->__pyx_n_s_got jpayne@68: #define __pyx_n_s_ignore_truncation __pyx_mstate_global->__pyx_n_s_ignore_truncation jpayne@68: #define __pyx_n_s_import __pyx_mstate_global->__pyx_n_s_import jpayne@68: #define __pyx_n_s_init __pyx_mstate_global->__pyx_n_s_init jpayne@68: #define __pyx_n_s_init_subclass __pyx_mstate_global->__pyx_n_s_init_subclass jpayne@68: #define __pyx_n_s_initializing __pyx_mstate_global->__pyx_n_s_initializing jpayne@68: #define __pyx_kp_u_invalid_contig_s __pyx_mstate_global->__pyx_kp_u_invalid_contig_s jpayne@68: #define __pyx_kp_u_invalid_coordinates_start_i_stop __pyx_mstate_global->__pyx_kp_u_invalid_coordinates_start_i_stop jpayne@68: #define __pyx_kp_u_invalid_tid __pyx_mstate_global->__pyx_kp_u_invalid_tid jpayne@68: #define __pyx_n_s_io __pyx_mstate_global->__pyx_n_s_io jpayne@68: #define __pyx_n_s_is_coroutine __pyx_mstate_global->__pyx_n_s_is_coroutine jpayne@68: #define __pyx_n_s_is_open __pyx_mstate_global->__pyx_n_s_is_open jpayne@68: #define __pyx_n_s_is_valid_reference_name __pyx_mstate_global->__pyx_n_s_is_valid_reference_name jpayne@68: #define __pyx_n_s_is_valid_tid __pyx_mstate_global->__pyx_n_s_is_valid_tid jpayne@68: #define __pyx_n_s_isatty __pyx_mstate_global->__pyx_n_s_isatty jpayne@68: #define __pyx_kp_u_isenabled __pyx_mstate_global->__pyx_kp_u_isenabled jpayne@68: #define __pyx_n_s_join __pyx_mstate_global->__pyx_n_s_join jpayne@68: #define __pyx_n_s_line __pyx_mstate_global->__pyx_n_s_line jpayne@68: #define __pyx_n_s_lines __pyx_mstate_global->__pyx_n_s_lines jpayne@68: #define __pyx_n_s_main __pyx_mstate_global->__pyx_n_s_main jpayne@68: #define __pyx_n_s_metaclass __pyx_mstate_global->__pyx_n_s_metaclass jpayne@68: #define __pyx_kp_u_metadata_not_available_on_closed __pyx_mstate_global->__pyx_kp_u_metadata_not_available_on_closed jpayne@68: #define __pyx_n_s_mode __pyx_mstate_global->__pyx_n_s_mode jpayne@68: #define __pyx_n_s_module __pyx_mstate_global->__pyx_n_s_module jpayne@68: #define __pyx_n_s_mro_entries __pyx_mstate_global->__pyx_n_s_mro_entries jpayne@68: #define __pyx_n_s_msg __pyx_mstate_global->__pyx_n_s_msg jpayne@68: #define __pyx_n_s_mv __pyx_mstate_global->__pyx_n_s_mv jpayne@68: #define __pyx_n_s_name __pyx_mstate_global->__pyx_n_s_name jpayne@68: #define __pyx_n_s_name_2 __pyx_mstate_global->__pyx_n_s_name_2 jpayne@68: #define __pyx_n_s_ne __pyx_mstate_global->__pyx_n_s_ne jpayne@68: #define __pyx_kp_u_no_BGZF_EOF_marker_file_may_be_t __pyx_mstate_global->__pyx_kp_u_no_BGZF_EOF_marker_file_may_be_t jpayne@68: #define __pyx_kp_s_no_default___reduce___due_to_non __pyx_mstate_global->__pyx_kp_s_no_default___reduce___due_to_non jpayne@68: #define __pyx_n_s_nonzero __pyx_mstate_global->__pyx_n_s_nonzero jpayne@68: #define __pyx_n_s_object __pyx_mstate_global->__pyx_n_s_object jpayne@68: #define __pyx_n_s_off __pyx_mstate_global->__pyx_n_s_off jpayne@68: #define __pyx_n_s_offset __pyx_mstate_global->__pyx_n_s_offset jpayne@68: #define __pyx_kp_u_operation_on_closed_HFile __pyx_mstate_global->__pyx_kp_u_operation_on_closed_HFile jpayne@68: #define __pyx_n_s_opts __pyx_mstate_global->__pyx_n_s_opts jpayne@68: #define __pyx_n_s_os __pyx_mstate_global->__pyx_n_s_os jpayne@68: #define __pyx_n_s_other __pyx_mstate_global->__pyx_n_s_other jpayne@68: #define __pyx_n_s_parse_region __pyx_mstate_global->__pyx_n_s_parse_region jpayne@68: #define __pyx_n_s_part __pyx_mstate_global->__pyx_n_s_part jpayne@68: #define __pyx_n_s_parts __pyx_mstate_global->__pyx_n_s_parts jpayne@68: #define __pyx_n_s_prepare __pyx_mstate_global->__pyx_n_s_prepare jpayne@68: #define __pyx_n_s_pysam_libchtslib __pyx_mstate_global->__pyx_n_s_pysam_libchtslib jpayne@68: #define __pyx_kp_s_pysam_libchtslib_pyx __pyx_mstate_global->__pyx_kp_s_pysam_libchtslib_pyx jpayne@68: #define __pyx_n_s_pyx_state __pyx_mstate_global->__pyx_n_s_pyx_state jpayne@68: #define __pyx_n_s_pyx_vtable __pyx_mstate_global->__pyx_n_s_pyx_vtable jpayne@68: #define __pyx_n_s_qualname __pyx_mstate_global->__pyx_n_s_qualname jpayne@68: #define __pyx_n_u_r __pyx_mstate_global->__pyx_n_u_r jpayne@68: #define __pyx_n_s_re __pyx_mstate_global->__pyx_n_s_re jpayne@68: #define __pyx_n_s_read __pyx_mstate_global->__pyx_n_s_read jpayne@68: #define __pyx_n_s_readable __pyx_mstate_global->__pyx_n_s_readable jpayne@68: #define __pyx_n_s_readall __pyx_mstate_global->__pyx_n_s_readall jpayne@68: #define __pyx_n_s_readinto __pyx_mstate_global->__pyx_n_s_readinto jpayne@68: #define __pyx_n_s_readline __pyx_mstate_global->__pyx_n_s_readline jpayne@68: #define __pyx_n_s_readlines __pyx_mstate_global->__pyx_n_s_readlines jpayne@68: #define __pyx_n_s_reduce __pyx_mstate_global->__pyx_n_s_reduce jpayne@68: #define __pyx_n_s_reduce_cython __pyx_mstate_global->__pyx_n_s_reduce_cython jpayne@68: #define __pyx_n_s_reduce_ex __pyx_mstate_global->__pyx_n_s_reduce_ex jpayne@68: #define __pyx_n_s_reference __pyx_mstate_global->__pyx_n_s_reference jpayne@68: #define __pyx_n_s_region __pyx_mstate_global->__pyx_n_s_region jpayne@68: #define __pyx_n_s_replace __pyx_mstate_global->__pyx_n_s_replace jpayne@68: #define __pyx_n_s_reset __pyx_mstate_global->__pyx_n_s_reset jpayne@68: #define __pyx_n_s_ret __pyx_mstate_global->__pyx_n_s_ret jpayne@68: #define __pyx_n_s_rstart __pyx_mstate_global->__pyx_n_s_rstart jpayne@68: #define __pyx_n_s_rstop __pyx_mstate_global->__pyx_n_s_rstop jpayne@68: #define __pyx_n_s_rtid __pyx_mstate_global->__pyx_n_s_rtid jpayne@68: #define __pyx_n_s_rval __pyx_mstate_global->__pyx_n_s_rval jpayne@68: #define __pyx_n_s_seek __pyx_mstate_global->__pyx_n_s_seek jpayne@68: #define __pyx_kp_u_seek_failed_on_HFile __pyx_mstate_global->__pyx_kp_u_seek_failed_on_HFile jpayne@68: #define __pyx_kp_u_seek_not_available_in_streams __pyx_mstate_global->__pyx_kp_u_seek_not_available_in_streams jpayne@68: #define __pyx_kp_u_seek_not_implemented_in_files_co __pyx_mstate_global->__pyx_kp_u_seek_not_implemented_in_files_co jpayne@68: #define __pyx_n_s_seekable __pyx_mstate_global->__pyx_n_s_seekable jpayne@68: #define __pyx_n_s_self __pyx_mstate_global->__pyx_n_s_self jpayne@68: #define __pyx_kp_s_self_fp_cannot_be_converted_to_a __pyx_mstate_global->__pyx_kp_s_self_fp_cannot_be_converted_to_a jpayne@68: #define __pyx_n_s_set_name __pyx_mstate_global->__pyx_n_s_set_name jpayne@68: #define __pyx_n_s_set_verbosity __pyx_mstate_global->__pyx_n_s_set_verbosity jpayne@68: #define __pyx_n_u_set_verbosity __pyx_mstate_global->__pyx_n_u_set_verbosity jpayne@68: #define __pyx_n_s_setstate __pyx_mstate_global->__pyx_n_s_setstate jpayne@68: #define __pyx_n_s_setstate_cython __pyx_mstate_global->__pyx_n_s_setstate_cython jpayne@68: #define __pyx_n_s_size __pyx_mstate_global->__pyx_n_s_size jpayne@68: #define __pyx_n_s_spec __pyx_mstate_global->__pyx_n_s_spec jpayne@68: #define __pyx_n_s_split __pyx_mstate_global->__pyx_n_s_split jpayne@68: #define __pyx_n_s_start __pyx_mstate_global->__pyx_n_s_start jpayne@68: #define __pyx_kp_u_start_out_of_range_i __pyx_mstate_global->__pyx_kp_u_start_out_of_range_i jpayne@68: #define __pyx_n_s_stop __pyx_mstate_global->__pyx_n_s_stop jpayne@68: #define __pyx_kp_u_stop_and_end_should_not_both_be __pyx_mstate_global->__pyx_kp_u_stop_and_end_should_not_both_be jpayne@68: #define __pyx_kp_u_stop_out_of_range_i __pyx_mstate_global->__pyx_kp_u_stop_out_of_range_i jpayne@68: #define __pyx_kp_s_stringsource __pyx_mstate_global->__pyx_kp_s_stringsource jpayne@68: #define __pyx_n_s_super __pyx_mstate_global->__pyx_n_s_super jpayne@68: #define __pyx_n_s_tb __pyx_mstate_global->__pyx_n_s_tb jpayne@68: #define __pyx_n_s_tell __pyx_mstate_global->__pyx_n_s_tell jpayne@68: #define __pyx_kp_u_tell_failed_on_HFile __pyx_mstate_global->__pyx_kp_u_tell_failed_on_HFile jpayne@68: #define __pyx_kp_u_tell_not_available_in_streams __pyx_mstate_global->__pyx_kp_u_tell_not_available_in_streams jpayne@68: #define __pyx_n_s_test __pyx_mstate_global->__pyx_n_s_test jpayne@68: #define __pyx_n_s_tid __pyx_mstate_global->__pyx_n_s_tid jpayne@68: #define __pyx_n_s_traceback __pyx_mstate_global->__pyx_n_s_traceback jpayne@68: #define __pyx_n_s_truncate __pyx_mstate_global->__pyx_n_s_truncate jpayne@68: #define __pyx_n_s_type __pyx_mstate_global->__pyx_n_s_type jpayne@68: #define __pyx_n_s_value __pyx_mstate_global->__pyx_n_s_value jpayne@68: #define __pyx_n_s_verbosity __pyx_mstate_global->__pyx_n_s_verbosity jpayne@68: #define __pyx_n_u_w __pyx_mstate_global->__pyx_n_u_w jpayne@68: #define __pyx_n_s_warn __pyx_mstate_global->__pyx_n_s_warn jpayne@68: #define __pyx_n_s_warnings __pyx_mstate_global->__pyx_n_s_warnings jpayne@68: #define __pyx_n_s_whence __pyx_mstate_global->__pyx_n_s_whence jpayne@68: #define __pyx_n_s_writable __pyx_mstate_global->__pyx_n_s_writable jpayne@68: #define __pyx_n_s_write __pyx_mstate_global->__pyx_n_s_write jpayne@68: #define __pyx_kp_u_write_failed_on_HFile __pyx_mstate_global->__pyx_kp_u_write_failed_on_HFile jpayne@68: #define __pyx_n_s_writelines __pyx_mstate_global->__pyx_n_s_writelines jpayne@68: #define __pyx_int_0 __pyx_mstate_global->__pyx_int_0 jpayne@68: #define __pyx_int_1 __pyx_mstate_global->__pyx_int_1 jpayne@68: #define __pyx_int_neg_1 __pyx_mstate_global->__pyx_int_neg_1 jpayne@68: #define __pyx_k__18 __pyx_mstate_global->__pyx_k__18 jpayne@68: #define __pyx_k__41 __pyx_mstate_global->__pyx_k__41 jpayne@68: #define __pyx_codeobj_ __pyx_mstate_global->__pyx_codeobj_ jpayne@68: #define __pyx_tuple__5 __pyx_mstate_global->__pyx_tuple__5 jpayne@68: #define __pyx_tuple__6 __pyx_mstate_global->__pyx_tuple__6 jpayne@68: #define __pyx_tuple__39 __pyx_mstate_global->__pyx_tuple__39 jpayne@68: #define __pyx_tuple__43 __pyx_mstate_global->__pyx_tuple__43 jpayne@68: #define __pyx_tuple__44 __pyx_mstate_global->__pyx_tuple__44 jpayne@68: #define __pyx_tuple__46 __pyx_mstate_global->__pyx_tuple__46 jpayne@68: #define __pyx_tuple__47 __pyx_mstate_global->__pyx_tuple__47 jpayne@68: #define __pyx_tuple__48 __pyx_mstate_global->__pyx_tuple__48 jpayne@68: #define __pyx_tuple__49 __pyx_mstate_global->__pyx_tuple__49 jpayne@68: #define __pyx_tuple__51 __pyx_mstate_global->__pyx_tuple__51 jpayne@68: #define __pyx_tuple__53 __pyx_mstate_global->__pyx_tuple__53 jpayne@68: #define __pyx_tuple__54 __pyx_mstate_global->__pyx_tuple__54 jpayne@68: #define __pyx_tuple__57 __pyx_mstate_global->__pyx_tuple__57 jpayne@68: #define __pyx_tuple__66 __pyx_mstate_global->__pyx_tuple__66 jpayne@68: #define __pyx_tuple__67 __pyx_mstate_global->__pyx_tuple__67 jpayne@68: #define __pyx_tuple__68 __pyx_mstate_global->__pyx_tuple__68 jpayne@68: #define __pyx_tuple__69 __pyx_mstate_global->__pyx_tuple__69 jpayne@68: #define __pyx_tuple__70 __pyx_mstate_global->__pyx_tuple__70 jpayne@68: #define __pyx_tuple__71 __pyx_mstate_global->__pyx_tuple__71 jpayne@68: #define __pyx_tuple__72 __pyx_mstate_global->__pyx_tuple__72 jpayne@68: #define __pyx_tuple__73 __pyx_mstate_global->__pyx_tuple__73 jpayne@68: #define __pyx_tuple__74 __pyx_mstate_global->__pyx_tuple__74 jpayne@68: #define __pyx_tuple__75 __pyx_mstate_global->__pyx_tuple__75 jpayne@68: #define __pyx_tuple__76 __pyx_mstate_global->__pyx_tuple__76 jpayne@68: #define __pyx_tuple__77 __pyx_mstate_global->__pyx_tuple__77 jpayne@68: #define __pyx_tuple__78 __pyx_mstate_global->__pyx_tuple__78 jpayne@68: #define __pyx_tuple__79 __pyx_mstate_global->__pyx_tuple__79 jpayne@68: #define __pyx_tuple__80 __pyx_mstate_global->__pyx_tuple__80 jpayne@68: #define __pyx_tuple__81 __pyx_mstate_global->__pyx_tuple__81 jpayne@68: #define __pyx_tuple__82 __pyx_mstate_global->__pyx_tuple__82 jpayne@68: #define __pyx_tuple__83 __pyx_mstate_global->__pyx_tuple__83 jpayne@68: #define __pyx_tuple__84 __pyx_mstate_global->__pyx_tuple__84 jpayne@68: #define __pyx_tuple__85 __pyx_mstate_global->__pyx_tuple__85 jpayne@68: #define __pyx_tuple__86 __pyx_mstate_global->__pyx_tuple__86 jpayne@68: #define __pyx_tuple__87 __pyx_mstate_global->__pyx_tuple__87 jpayne@68: #define __pyx_tuple__88 __pyx_mstate_global->__pyx_tuple__88 jpayne@68: #define __pyx_tuple__89 __pyx_mstate_global->__pyx_tuple__89 jpayne@68: #define __pyx_tuple__90 __pyx_mstate_global->__pyx_tuple__90 jpayne@68: #define __pyx_tuple__91 __pyx_mstate_global->__pyx_tuple__91 jpayne@68: #define __pyx_tuple__92 __pyx_mstate_global->__pyx_tuple__92 jpayne@68: #define __pyx_tuple__93 __pyx_mstate_global->__pyx_tuple__93 jpayne@68: #define __pyx_tuple__94 __pyx_mstate_global->__pyx_tuple__94 jpayne@68: #define __pyx_tuple__95 __pyx_mstate_global->__pyx_tuple__95 jpayne@68: #define __pyx_tuple__96 __pyx_mstate_global->__pyx_tuple__96 jpayne@68: #define __pyx_codeobj__2 __pyx_mstate_global->__pyx_codeobj__2 jpayne@68: #define __pyx_codeobj__3 __pyx_mstate_global->__pyx_codeobj__3 jpayne@68: #define __pyx_codeobj__4 __pyx_mstate_global->__pyx_codeobj__4 jpayne@68: #define __pyx_codeobj__7 __pyx_mstate_global->__pyx_codeobj__7 jpayne@68: #define __pyx_codeobj__8 __pyx_mstate_global->__pyx_codeobj__8 jpayne@68: #define __pyx_codeobj__9 __pyx_mstate_global->__pyx_codeobj__9 jpayne@68: #define __pyx_codeobj__10 __pyx_mstate_global->__pyx_codeobj__10 jpayne@68: #define __pyx_codeobj__11 __pyx_mstate_global->__pyx_codeobj__11 jpayne@68: #define __pyx_codeobj__12 __pyx_mstate_global->__pyx_codeobj__12 jpayne@68: #define __pyx_codeobj__14 __pyx_mstate_global->__pyx_codeobj__14 jpayne@68: #define __pyx_codeobj__15 __pyx_mstate_global->__pyx_codeobj__15 jpayne@68: #define __pyx_codeobj__16 __pyx_mstate_global->__pyx_codeobj__16 jpayne@68: #define __pyx_codeobj__17 __pyx_mstate_global->__pyx_codeobj__17 jpayne@68: #define __pyx_codeobj__19 __pyx_mstate_global->__pyx_codeobj__19 jpayne@68: #define __pyx_codeobj__20 __pyx_mstate_global->__pyx_codeobj__20 jpayne@68: #define __pyx_codeobj__21 __pyx_mstate_global->__pyx_codeobj__21 jpayne@68: #define __pyx_codeobj__22 __pyx_mstate_global->__pyx_codeobj__22 jpayne@68: #define __pyx_codeobj__23 __pyx_mstate_global->__pyx_codeobj__23 jpayne@68: #define __pyx_codeobj__24 __pyx_mstate_global->__pyx_codeobj__24 jpayne@68: #define __pyx_codeobj__25 __pyx_mstate_global->__pyx_codeobj__25 jpayne@68: #define __pyx_codeobj__26 __pyx_mstate_global->__pyx_codeobj__26 jpayne@68: #define __pyx_codeobj__27 __pyx_mstate_global->__pyx_codeobj__27 jpayne@68: #define __pyx_codeobj__28 __pyx_mstate_global->__pyx_codeobj__28 jpayne@68: #define __pyx_codeobj__29 __pyx_mstate_global->__pyx_codeobj__29 jpayne@68: #define __pyx_codeobj__30 __pyx_mstate_global->__pyx_codeobj__30 jpayne@68: #define __pyx_codeobj__31 __pyx_mstate_global->__pyx_codeobj__31 jpayne@68: #define __pyx_codeobj__32 __pyx_mstate_global->__pyx_codeobj__32 jpayne@68: #define __pyx_codeobj__33 __pyx_mstate_global->__pyx_codeobj__33 jpayne@68: #define __pyx_codeobj__34 __pyx_mstate_global->__pyx_codeobj__34 jpayne@68: #define __pyx_codeobj__35 __pyx_mstate_global->__pyx_codeobj__35 jpayne@68: #define __pyx_codeobj__36 __pyx_mstate_global->__pyx_codeobj__36 jpayne@68: #define __pyx_codeobj__37 __pyx_mstate_global->__pyx_codeobj__37 jpayne@68: #define __pyx_codeobj__38 __pyx_mstate_global->__pyx_codeobj__38 jpayne@68: #define __pyx_codeobj__40 __pyx_mstate_global->__pyx_codeobj__40 jpayne@68: #define __pyx_codeobj__42 __pyx_mstate_global->__pyx_codeobj__42 jpayne@68: #define __pyx_codeobj__45 __pyx_mstate_global->__pyx_codeobj__45 jpayne@68: #define __pyx_codeobj__50 __pyx_mstate_global->__pyx_codeobj__50 jpayne@68: #define __pyx_codeobj__52 __pyx_mstate_global->__pyx_codeobj__52 jpayne@68: #define __pyx_codeobj__60 __pyx_mstate_global->__pyx_codeobj__60 jpayne@68: #define __pyx_codeobj__61 __pyx_mstate_global->__pyx_codeobj__61 jpayne@68: #define __pyx_codeobj__62 __pyx_mstate_global->__pyx_codeobj__62 jpayne@68: #define __pyx_codeobj__63 __pyx_mstate_global->__pyx_codeobj__63 jpayne@68: #define __pyx_codeobj__64 __pyx_mstate_global->__pyx_codeobj__64 jpayne@68: #define __pyx_codeobj__65 __pyx_mstate_global->__pyx_codeobj__65 jpayne@68: /* #### Code section: module_code ### */ jpayne@68: jpayne@68: /* "cpython/complex.pxd":19 jpayne@68: * jpayne@68: * @property jpayne@68: * cdef inline double real(self) noexcept: # <<<<<<<<<<<<<< jpayne@68: * return self.cval.real jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: static CYTHON_INLINE double __pyx_f_7cpython_7complex_7complex_4real_real(PyComplexObject *__pyx_v_self) { jpayne@68: double __pyx_r; jpayne@68: jpayne@68: /* "cpython/complex.pxd":20 jpayne@68: * @property jpayne@68: * cdef inline double real(self) noexcept: jpayne@68: * return self.cval.real # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * @property jpayne@68: */ jpayne@68: __pyx_r = __pyx_v_self->cval.real; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "cpython/complex.pxd":19 jpayne@68: * jpayne@68: * @property jpayne@68: * cdef inline double real(self) noexcept: # <<<<<<<<<<<<<< jpayne@68: * return self.cval.real jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L0:; jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "cpython/complex.pxd":23 jpayne@68: * jpayne@68: * @property jpayne@68: * cdef inline double imag(self) noexcept: # <<<<<<<<<<<<<< jpayne@68: * return self.cval.imag jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: static CYTHON_INLINE double __pyx_f_7cpython_7complex_7complex_4imag_imag(PyComplexObject *__pyx_v_self) { jpayne@68: double __pyx_r; jpayne@68: jpayne@68: /* "cpython/complex.pxd":24 jpayne@68: * @property jpayne@68: * cdef inline double imag(self) noexcept: jpayne@68: * return self.cval.imag # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * # PyTypeObject PyComplex_Type jpayne@68: */ jpayne@68: __pyx_r = __pyx_v_self->cval.imag; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "cpython/complex.pxd":23 jpayne@68: * jpayne@68: * @property jpayne@68: * cdef inline double imag(self) noexcept: # <<<<<<<<<<<<<< jpayne@68: * return self.cval.imag jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L0:; jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":112 jpayne@68: * jpayne@68: * jpayne@68: * cdef inline object get_value(var, default_value=None): # <<<<<<<<<<<<<< jpayne@68: * """Return a new reference to the value of the context variable, jpayne@68: * or the default value of the context variable, jpayne@68: */ jpayne@68: jpayne@68: static CYTHON_INLINE PyObject *__pyx_f_7cpython_11contextvars_get_value(PyObject *__pyx_v_var, struct __pyx_opt_args_7cpython_11contextvars_get_value *__pyx_optional_args) { jpayne@68: PyObject *__pyx_v_default_value = ((PyObject *)Py_None); jpayne@68: PyObject *__pyx_v_value; jpayne@68: PyObject *__pyx_v_pyvalue = NULL; jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_t_1; jpayne@68: int __pyx_t_2; jpayne@68: PyObject *__pyx_t_3 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("get_value", 1); jpayne@68: if (__pyx_optional_args) { jpayne@68: if (__pyx_optional_args->__pyx_n > 0) { jpayne@68: __pyx_v_default_value = __pyx_optional_args->default_value; jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":117 jpayne@68: * or None if no such value or default was found. jpayne@68: * """ jpayne@68: * cdef PyObject *value = NULL # <<<<<<<<<<<<<< jpayne@68: * PyContextVar_Get(var, NULL, &value) jpayne@68: * if value is NULL: jpayne@68: */ jpayne@68: __pyx_v_value = NULL; jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":118 jpayne@68: * """ jpayne@68: * cdef PyObject *value = NULL jpayne@68: * PyContextVar_Get(var, NULL, &value) # <<<<<<<<<<<<<< jpayne@68: * if value is NULL: jpayne@68: * # context variable does not have a default jpayne@68: */ jpayne@68: __pyx_t_1 = PyContextVar_Get(__pyx_v_var, NULL, (&__pyx_v_value)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(2, 118, __pyx_L1_error) jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":119 jpayne@68: * cdef PyObject *value = NULL jpayne@68: * PyContextVar_Get(var, NULL, &value) jpayne@68: * if value is NULL: # <<<<<<<<<<<<<< jpayne@68: * # context variable does not have a default jpayne@68: * pyvalue = default_value jpayne@68: */ jpayne@68: __pyx_t_2 = (__pyx_v_value == NULL); jpayne@68: if (__pyx_t_2) { jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":121 jpayne@68: * if value is NULL: jpayne@68: * # context variable does not have a default jpayne@68: * pyvalue = default_value # <<<<<<<<<<<<<< jpayne@68: * else: jpayne@68: * # value or default value of context variable jpayne@68: */ jpayne@68: __Pyx_INCREF(__pyx_v_default_value); jpayne@68: __pyx_v_pyvalue = __pyx_v_default_value; jpayne@68: jpayne@68: /* "cpython/contextvars.pxd":119 jpayne@68: * cdef PyObject *value = NULL jpayne@68: * PyContextVar_Get(var, NULL, &value) jpayne@68: * if value 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= -1; jpayne@68: if (__pyx_v_info->obj != NULL) { jpayne@68: __Pyx_GOTREF(__pyx_v_info->obj); jpayne@68: __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = 0; jpayne@68: } jpayne@68: goto __pyx_L2; jpayne@68: __pyx_L0:; jpayne@68: if (__pyx_v_info->obj == Py_None) { jpayne@68: __Pyx_GOTREF(__pyx_v_info->obj); jpayne@68: __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = 0; jpayne@68: } jpayne@68: __pyx_L2:; jpayne@68: __Pyx_XDECREF(__pyx_v_item_count); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "array.pxd":129 jpayne@68: * info.obj = self jpayne@68: * jpayne@68: * def __releasebuffer__(self, Py_buffer* info): # <<<<<<<<<<<<<< jpayne@68: * PyObject_Free(info.shape) jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: CYTHON_UNUSED static void __pyx_pw_7cpython_5array_5array_3__releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info); /*proto*/ jpayne@68: CYTHON_UNUSED static void __pyx_pw_7cpython_5array_5array_3__releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info) { jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__releasebuffer__ (wrapper)", 0); jpayne@68: __pyx_kwvalues = __Pyx_KwValues_VARARGS(__pyx_args, __pyx_nargs); jpayne@68: __pyx_pf_7cpython_5array_5array_2__releasebuffer__(((arrayobject *)__pyx_v_self), ((Py_buffer *)__pyx_v_info)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: } jpayne@68: jpayne@68: static void __pyx_pf_7cpython_5array_5array_2__releasebuffer__(CYTHON_UNUSED arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info) { jpayne@68: jpayne@68: /* "array.pxd":130 jpayne@68: * jpayne@68: * def __releasebuffer__(self, Py_buffer* info): jpayne@68: * PyObject_Free(info.shape) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * array newarrayobject(PyTypeObject* type, Py_ssize_t size, arraydescr *descr) jpayne@68: */ jpayne@68: PyObject_Free(__pyx_v_info->shape); jpayne@68: jpayne@68: /* "array.pxd":129 jpayne@68: * info.obj = self jpayne@68: * jpayne@68: * def __releasebuffer__(self, Py_buffer* info): # <<<<<<<<<<<<<< jpayne@68: * PyObject_Free(info.shape) jpayne@68: * jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: } jpayne@68: jpayne@68: /* "array.pxd":141 jpayne@68: * jpayne@68: * jpayne@68: * cdef inline array clone(array template, Py_ssize_t length, bint zero): # <<<<<<<<<<<<<< jpayne@68: * """ fast creation of a new array, given a template array. jpayne@68: * type will be same as template. jpayne@68: */ jpayne@68: jpayne@68: static CYTHON_INLINE arrayobject *__pyx_f_7cpython_5array_clone(arrayobject *__pyx_v_template, Py_ssize_t __pyx_v_length, int __pyx_v_zero) { jpayne@68: arrayobject *__pyx_v_op = 0; jpayne@68: arrayobject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: PyObject *__pyx_t_1 = NULL; jpayne@68: int __pyx_t_2; jpayne@68: 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zeroes.""" jpayne@68: * cdef array op = newarrayobject(Py_TYPE(template), length, template.ob_descr) jpayne@68: * if zero and op is not None: # <<<<<<<<<<<<<< jpayne@68: * memset(op.data.as_chars, 0, length * op.ob_descr.itemsize) jpayne@68: * return op jpayne@68: */ jpayne@68: if (__pyx_v_zero) { jpayne@68: } else { jpayne@68: __pyx_t_2 = __pyx_v_zero; jpayne@68: goto __pyx_L4_bool_binop_done; jpayne@68: } jpayne@68: __pyx_t_3 = (((PyObject *)__pyx_v_op) != Py_None); jpayne@68: __pyx_t_2 = __pyx_t_3; jpayne@68: __pyx_L4_bool_binop_done:; jpayne@68: if (__pyx_t_2) { jpayne@68: jpayne@68: /* "array.pxd":147 jpayne@68: * cdef array op = newarrayobject(Py_TYPE(template), length, template.ob_descr) jpayne@68: * if zero and op is not None: jpayne@68: * memset(op.data.as_chars, 0, length * op.ob_descr.itemsize) # <<<<<<<<<<<<<< jpayne@68: * return op jpayne@68: * jpayne@68: */ jpayne@68: (void)(memset(__pyx_v_op->data.as_chars, 0, (__pyx_v_length * __pyx_v_op->ob_descr->itemsize))); jpayne@68: jpayne@68: /* "array.pxd":146 jpayne@68: * if zero is true, new array will be initialized with zeroes.""" jpayne@68: * cdef array op = newarrayobject(Py_TYPE(template), length, template.ob_descr) jpayne@68: * if zero and op is not None: # <<<<<<<<<<<<<< jpayne@68: * memset(op.data.as_chars, 0, length * op.ob_descr.itemsize) jpayne@68: * return op jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "array.pxd":148 jpayne@68: * if zero and op is not None: jpayne@68: * memset(op.data.as_chars, 0, length * op.ob_descr.itemsize) jpayne@68: * return op # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef inline array copy(array self): jpayne@68: */ jpayne@68: __Pyx_XDECREF((PyObject *)__pyx_r); jpayne@68: __Pyx_INCREF((PyObject *)__pyx_v_op); jpayne@68: __pyx_r = __pyx_v_op; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "array.pxd":141 jpayne@68: * jpayne@68: * jpayne@68: * cdef inline array clone(array template, Py_ssize_t length, bint zero): # <<<<<<<<<<<<<< jpayne@68: * """ fast creation of a new array, given a template array. jpayne@68: * type will be same as template. jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_1); jpayne@68: __Pyx_AddTraceback("cpython.array.clone", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = 0; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XDECREF((PyObject *)__pyx_v_op); jpayne@68: __Pyx_XGIVEREF((PyObject *)__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "array.pxd":150 jpayne@68: * return op jpayne@68: * jpayne@68: * cdef inline array copy(array self): # <<<<<<<<<<<<<< jpayne@68: * """ make a copy of an array. """ jpayne@68: * cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr) jpayne@68: */ jpayne@68: jpayne@68: static CYTHON_INLINE arrayobject *__pyx_f_7cpython_5array_copy(arrayobject *__pyx_v_self) { jpayne@68: arrayobject *__pyx_v_op = 0; jpayne@68: arrayobject *__pyx_r = NULL; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: PyObject *__pyx_t_1 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("copy", 1); jpayne@68: jpayne@68: /* "array.pxd":152 jpayne@68: * cdef inline array copy(array self): jpayne@68: * """ make a copy of an array. """ jpayne@68: * cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr) # <<<<<<<<<<<<<< jpayne@68: * memcpy(op.data.as_chars, self.data.as_chars, Py_SIZE(op) * op.ob_descr.itemsize) jpayne@68: * return op jpayne@68: */ jpayne@68: __pyx_t_1 = ((PyObject *)newarrayobject(Py_TYPE(((PyObject *)__pyx_v_self)), Py_SIZE(((PyObject *)__pyx_v_self)), __pyx_v_self->ob_descr)); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 152, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __pyx_v_op = ((arrayobject *)__pyx_t_1); jpayne@68: __pyx_t_1 = 0; jpayne@68: jpayne@68: /* "array.pxd":153 jpayne@68: * """ make a copy of an array. """ jpayne@68: * cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr) jpayne@68: * memcpy(op.data.as_chars, self.data.as_chars, Py_SIZE(op) * op.ob_descr.itemsize) # <<<<<<<<<<<<<< jpayne@68: * return op jpayne@68: * jpayne@68: */ jpayne@68: (void)(memcpy(__pyx_v_op->data.as_chars, __pyx_v_self->data.as_chars, (Py_SIZE(((PyObject *)__pyx_v_op)) * __pyx_v_op->ob_descr->itemsize))); jpayne@68: jpayne@68: /* "array.pxd":154 jpayne@68: * cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr) jpayne@68: * memcpy(op.data.as_chars, self.data.as_chars, Py_SIZE(op) * op.ob_descr.itemsize) jpayne@68: * return op # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef inline int extend_buffer(array self, char* stuff, Py_ssize_t n) except -1: jpayne@68: */ jpayne@68: __Pyx_XDECREF((PyObject *)__pyx_r); jpayne@68: __Pyx_INCREF((PyObject *)__pyx_v_op); jpayne@68: __pyx_r = __pyx_v_op; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "array.pxd":150 jpayne@68: * return op jpayne@68: * jpayne@68: * cdef inline array copy(array self): # <<<<<<<<<<<<<< jpayne@68: * """ make a copy of an array. """ jpayne@68: * cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr) jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_1); jpayne@68: __Pyx_AddTraceback("cpython.array.copy", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = 0; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XDECREF((PyObject *)__pyx_v_op); jpayne@68: __Pyx_XGIVEREF((PyObject *)__pyx_r); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "array.pxd":156 jpayne@68: * return op jpayne@68: * jpayne@68: * cdef inline int extend_buffer(array self, char* stuff, Py_ssize_t n) except -1: # <<<<<<<<<<<<<< jpayne@68: * """ efficient appending of new stuff of same type jpayne@68: * (e.g. of same array type) jpayne@68: */ jpayne@68: jpayne@68: static CYTHON_INLINE int __pyx_f_7cpython_5array_extend_buffer(arrayobject *__pyx_v_self, char *__pyx_v_stuff, Py_ssize_t __pyx_v_n) { jpayne@68: Py_ssize_t __pyx_v_itemsize; jpayne@68: Py_ssize_t __pyx_v_origsize; jpayne@68: int __pyx_r; jpayne@68: int __pyx_t_1; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: jpayne@68: /* "array.pxd":160 jpayne@68: * (e.g. of same array type) jpayne@68: * n: number of elements (not number of bytes!) """ jpayne@68: * cdef Py_ssize_t itemsize = self.ob_descr.itemsize # <<<<<<<<<<<<<< jpayne@68: * cdef Py_ssize_t origsize = Py_SIZE(self) jpayne@68: * resize_smart(self, origsize + n) jpayne@68: */ jpayne@68: __pyx_t_1 = __pyx_v_self->ob_descr->itemsize; jpayne@68: __pyx_v_itemsize = __pyx_t_1; jpayne@68: jpayne@68: /* "array.pxd":161 jpayne@68: * n: number of elements (not number of bytes!) """ jpayne@68: * cdef Py_ssize_t itemsize = self.ob_descr.itemsize jpayne@68: * cdef Py_ssize_t origsize = Py_SIZE(self) # <<<<<<<<<<<<<< jpayne@68: * resize_smart(self, origsize + n) jpayne@68: * memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize) jpayne@68: */ jpayne@68: __pyx_v_origsize = Py_SIZE(((PyObject *)__pyx_v_self)); jpayne@68: jpayne@68: /* "array.pxd":162 jpayne@68: * cdef Py_ssize_t itemsize = self.ob_descr.itemsize jpayne@68: * cdef Py_ssize_t origsize = Py_SIZE(self) jpayne@68: * resize_smart(self, origsize + n) # <<<<<<<<<<<<<< jpayne@68: * memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize) jpayne@68: * return 0 jpayne@68: */ jpayne@68: __pyx_t_1 = resize_smart(__pyx_v_self, (__pyx_v_origsize + __pyx_v_n)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(3, 162, __pyx_L1_error) jpayne@68: jpayne@68: /* "array.pxd":163 jpayne@68: * cdef Py_ssize_t origsize = Py_SIZE(self) jpayne@68: * resize_smart(self, origsize + n) jpayne@68: * memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize) # <<<<<<<<<<<<<< jpayne@68: * return 0 jpayne@68: * jpayne@68: */ jpayne@68: (void)(memcpy((__pyx_v_self->data.as_chars + (__pyx_v_origsize * __pyx_v_itemsize)), __pyx_v_stuff, (__pyx_v_n * __pyx_v_itemsize))); jpayne@68: jpayne@68: /* "array.pxd":164 jpayne@68: * resize_smart(self, origsize + n) jpayne@68: * memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize) jpayne@68: * return 0 # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef inline int extend(array self, array other) except -1: jpayne@68: */ jpayne@68: __pyx_r = 0; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "array.pxd":156 jpayne@68: * return op jpayne@68: * jpayne@68: * cdef inline int extend_buffer(array self, char* stuff, Py_ssize_t n) except -1: # <<<<<<<<<<<<<< jpayne@68: * """ efficient appending of new stuff of same type jpayne@68: * (e.g. of same array type) jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_AddTraceback("cpython.array.extend_buffer", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = -1; jpayne@68: __pyx_L0:; jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "array.pxd":166 jpayne@68: * return 0 jpayne@68: * jpayne@68: * cdef inline int extend(array self, array other) except -1: # <<<<<<<<<<<<<< jpayne@68: * """ extend array with data from another array; types must match. """ jpayne@68: * if self.ob_descr.typecode != other.ob_descr.typecode: jpayne@68: */ jpayne@68: jpayne@68: static CYTHON_INLINE int __pyx_f_7cpython_5array_extend(arrayobject *__pyx_v_self, arrayobject *__pyx_v_other) { jpayne@68: int __pyx_r; jpayne@68: int __pyx_t_1; jpayne@68: int __pyx_t_2; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: jpayne@68: /* "array.pxd":168 jpayne@68: * cdef inline int extend(array self, array other) except -1: jpayne@68: * """ extend array with data from another array; types must match. """ jpayne@68: * if self.ob_descr.typecode != other.ob_descr.typecode: # <<<<<<<<<<<<<< jpayne@68: * PyErr_BadArgument() jpayne@68: * return extend_buffer(self, other.data.as_chars, Py_SIZE(other)) jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_self->ob_descr->typecode != __pyx_v_other->ob_descr->typecode); jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "array.pxd":169 jpayne@68: * """ extend array with data from another array; types must match. """ jpayne@68: * if self.ob_descr.typecode != other.ob_descr.typecode: jpayne@68: * PyErr_BadArgument() # <<<<<<<<<<<<<< jpayne@68: * return extend_buffer(self, other.data.as_chars, Py_SIZE(other)) jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_2 = PyErr_BadArgument(); if (unlikely(__pyx_t_2 == ((int)0))) __PYX_ERR(3, 169, __pyx_L1_error) jpayne@68: jpayne@68: /* "array.pxd":168 jpayne@68: * cdef inline int extend(array self, array other) except -1: jpayne@68: * """ extend array with data from another array; types must match. """ jpayne@68: * if self.ob_descr.typecode != other.ob_descr.typecode: # <<<<<<<<<<<<<< jpayne@68: * PyErr_BadArgument() jpayne@68: * return extend_buffer(self, other.data.as_chars, Py_SIZE(other)) jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "array.pxd":170 jpayne@68: * if self.ob_descr.typecode != other.ob_descr.typecode: jpayne@68: * PyErr_BadArgument() jpayne@68: * return extend_buffer(self, other.data.as_chars, Py_SIZE(other)) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef inline void zero(array self) noexcept: jpayne@68: */ jpayne@68: __pyx_t_2 = __pyx_f_7cpython_5array_extend_buffer(__pyx_v_self, __pyx_v_other->data.as_chars, Py_SIZE(((PyObject *)__pyx_v_other))); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(3, 170, __pyx_L1_error) jpayne@68: __pyx_r = __pyx_t_2; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "array.pxd":166 jpayne@68: * return 0 jpayne@68: * jpayne@68: * cdef inline int extend(array self, array other) except -1: # <<<<<<<<<<<<<< jpayne@68: * """ extend array with data from another array; types must match. 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jpayne@68: __pyx_r = NULL; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_TraceReturn(__pyx_r, 0); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":145 jpayne@68: * return self.fp != NULL and 'r' in self.mode jpayne@68: * jpayne@68: * def read(self, Py_ssize_t size=-1): # <<<<<<<<<<<<<< jpayne@68: * if self.fp == NULL: jpayne@68: * raise IOError('operation on closed HFile') jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_5HFile_23read(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: PyDoc_STRVAR(__pyx_doc_5pysam_10libchtslib_5HFile_22read, "HFile.read(self, Py_ssize_t size=-1)"); jpayne@68: static PyMethodDef __pyx_mdef_5pysam_10libchtslib_5HFile_23read = {"read", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_23read, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_22read}; jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_5HFile_23read(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: Py_ssize_t __pyx_v_size; jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[1] = {0}; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("read (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_size,0}; jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (kw_args > 0) { jpayne@68: PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_size); jpayne@68: if (value) { values[0] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 145, __pyx_L3_error) jpayne@68: } jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "read") < 0)) __PYX_ERR(0, 145, __pyx_L3_error) jpayne@68: } jpayne@68: } else { jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: } jpayne@68: if (values[0]) { jpayne@68: __pyx_v_size = __Pyx_PyIndex_AsSsize_t(values[0]); if (unlikely((__pyx_v_size == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(0, 145, __pyx_L3_error) jpayne@68: } else { jpayne@68: __pyx_v_size = ((Py_ssize_t)-1L); jpayne@68: } jpayne@68: } jpayne@68: goto __pyx_L6_skip; jpayne@68: __pyx_L5_argtuple_error:; jpayne@68: __Pyx_RaiseArgtupleInvalid("read", 0, 0, 1, __pyx_nargs); __PYX_ERR(0, 145, __pyx_L3_error) jpayne@68: __pyx_L6_skip:; jpayne@68: goto __pyx_L4_argument_unpacking_done; jpayne@68: __pyx_L3_error:; jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_AddTraceback("pysam.libchtslib.HFile.read", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return NULL; jpayne@68: __pyx_L4_argument_unpacking_done:; jpayne@68: __pyx_r = __pyx_pf_5pysam_10libchtslib_5HFile_22read(((struct __pyx_obj_5pysam_10libchtslib_HFile *)__pyx_v_self), __pyx_v_size); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_22read(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, Py_ssize_t __pyx_v_size) { jpayne@68: PyObject *__pyx_v_parts = 0; jpayne@68: PyObject *__pyx_v_part = 0; jpayne@68: Py_ssize_t __pyx_v_chunk_size; jpayne@68: Py_ssize_t __pyx_v_ret; jpayne@68: Py_ssize_t __pyx_v_bytes_read; jpayne@68: char *__pyx_v_cpart; jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_TraceDeclarations jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_t_1; jpayne@68: PyObject *__pyx_t_2 = NULL; jpayne@68: int __pyx_t_3; jpayne@68: Py_ssize_t __pyx_t_4; jpayne@68: Py_ssize_t __pyx_t_5; jpayne@68: Py_ssize_t __pyx_t_6; jpayne@68: char *__pyx_t_7; jpayne@68: PyObject *__pyx_t_8 = NULL; jpayne@68: int __pyx_t_9; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_TraceFrameInit(__pyx_codeobj__12) jpayne@68: __Pyx_RefNannySetupContext("read", 1); jpayne@68: __Pyx_TraceCall("read", __pyx_f[0], 145, 0, __PYX_ERR(0, 145, __pyx_L1_error)); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":146 jpayne@68: * jpayne@68: * def read(self, Py_ssize_t size=-1): jpayne@68: * if self.fp == NULL: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('operation on closed HFile') jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_self->fp == NULL); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":147 jpayne@68: * def read(self, Py_ssize_t size=-1): jpayne@68: * if self.fp == NULL: jpayne@68: * raise IOError('operation on closed HFile') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if size == 0: jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_tuple__5, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 147, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 147, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":146 jpayne@68: * jpayne@68: * def read(self, Py_ssize_t size=-1): jpayne@68: * if self.fp == NULL: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('operation on closed HFile') jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":149 jpayne@68: * raise IOError('operation on closed HFile') jpayne@68: * jpayne@68: * if size == 0: # <<<<<<<<<<<<<< jpayne@68: * return b'' jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_size == 0); jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":150 jpayne@68: * jpayne@68: * if size == 0: jpayne@68: * return b'' # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef list parts = [] jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __Pyx_INCREF(__pyx_kp_b__13); jpayne@68: __pyx_r = __pyx_kp_b__13; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":149 jpayne@68: * raise IOError('operation on closed HFile') jpayne@68: * jpayne@68: * if size == 0: # <<<<<<<<<<<<<< jpayne@68: * return b'' jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":152 jpayne@68: * return b'' jpayne@68: * jpayne@68: * cdef list parts = [] # <<<<<<<<<<<<<< jpayne@68: * cdef bytes part jpayne@68: * cdef Py_ssize_t chunk_size, ret, bytes_read = 0 jpayne@68: */ jpayne@68: __pyx_t_2 = PyList_New(0); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 152, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_v_parts = ((PyObject*)__pyx_t_2); jpayne@68: __pyx_t_2 = 0; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":154 jpayne@68: * cdef list parts = [] jpayne@68: * cdef bytes part jpayne@68: * cdef Py_ssize_t chunk_size, ret, bytes_read = 0 # <<<<<<<<<<<<<< jpayne@68: * cdef char *cpart jpayne@68: * jpayne@68: */ jpayne@68: __pyx_v_bytes_read = 0; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":157 jpayne@68: * cdef char *cpart jpayne@68: * jpayne@68: * while size == -1 or bytes_read < size: # <<<<<<<<<<<<<< jpayne@68: * chunk_size = 4096 jpayne@68: * if size != -1: jpayne@68: */ jpayne@68: while (1) { jpayne@68: __pyx_t_3 = (__pyx_v_size == -1L); jpayne@68: if (!__pyx_t_3) { jpayne@68: } else { jpayne@68: __pyx_t_1 = __pyx_t_3; jpayne@68: goto __pyx_L7_bool_binop_done; jpayne@68: } jpayne@68: __pyx_t_3 = (__pyx_v_bytes_read < __pyx_v_size); jpayne@68: __pyx_t_1 = __pyx_t_3; jpayne@68: __pyx_L7_bool_binop_done:; jpayne@68: if (!__pyx_t_1) break; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":158 jpayne@68: * jpayne@68: * while size == -1 or bytes_read < size: jpayne@68: * chunk_size = 4096 # <<<<<<<<<<<<<< jpayne@68: * if size != -1: jpayne@68: * chunk_size = min(chunk_size, size - bytes_read) jpayne@68: */ jpayne@68: __pyx_v_chunk_size = 0x1000; 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jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":190 jpayne@68: * jpayne@68: * if size == 0: jpayne@68: * return size # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * mv = memoryview(buf) jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __pyx_t_2 = PyInt_FromSsize_t(__pyx_v_size); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 190, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_r = __pyx_t_2; jpayne@68: __pyx_t_2 = 0; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":189 jpayne@68: * size = len(buf) jpayne@68: * jpayne@68: * if size == 0: # <<<<<<<<<<<<<< jpayne@68: * return size jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":192 jpayne@68: * return size jpayne@68: * jpayne@68: * mv = memoryview(buf) # <<<<<<<<<<<<<< jpayne@68: * ret = hread(self.fp, mv, size) jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_2 = PyMemoryView_FromObject(__pyx_v_buf); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 192, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); 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jpayne@68: __Pyx_XDECREF(__pyx_t_2); jpayne@68: __Pyx_XDECREF(__pyx_t_4); jpayne@68: __Pyx_AddTraceback("pysam.libchtslib.HFile.readinto", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XDECREF(__pyx_v_mv); jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_TraceReturn(__pyx_r, 0); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":200 jpayne@68: * return ret jpayne@68: * jpayne@68: * def readline(self, Py_ssize_t size=-1): # <<<<<<<<<<<<<< jpayne@68: * if self.fp == NULL: jpayne@68: * raise IOError('operation on closed HFile') jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_5HFile_29readline(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); 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jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("readline (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_size,0}; jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (kw_args > 0) { jpayne@68: PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_size); 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jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 202, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":201 jpayne@68: * jpayne@68: * def readline(self, Py_ssize_t size=-1): jpayne@68: * if self.fp == NULL: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('operation on closed HFile') jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":204 jpayne@68: * raise IOError('operation on closed HFile') jpayne@68: * jpayne@68: * if size == 0: # <<<<<<<<<<<<<< jpayne@68: * return b'' jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_size == 0); jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":205 jpayne@68: * jpayne@68: * if size == 0: jpayne@68: * return b'' # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef list parts = [] jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __Pyx_INCREF(__pyx_kp_b__13); jpayne@68: __pyx_r = __pyx_kp_b__13; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":204 jpayne@68: * raise IOError('operation on closed HFile') jpayne@68: * jpayne@68: * if size == 0: # <<<<<<<<<<<<<< jpayne@68: * return b'' jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":207 jpayne@68: * return b'' jpayne@68: * jpayne@68: * cdef list parts = [] # <<<<<<<<<<<<<< jpayne@68: * cdef bytes part jpayne@68: * cdef Py_ssize_t chunk_size, ret, bytes_read = 0 jpayne@68: */ jpayne@68: __pyx_t_2 = PyList_New(0); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 207, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_v_parts = ((PyObject*)__pyx_t_2); jpayne@68: __pyx_t_2 = 0; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":209 jpayne@68: * cdef list parts = [] jpayne@68: * cdef bytes part jpayne@68: * cdef Py_ssize_t chunk_size, ret, bytes_read = 0 # <<<<<<<<<<<<<< jpayne@68: * cdef char *cpart jpayne@68: * jpayne@68: */ jpayne@68: __pyx_v_bytes_read = 0; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":212 jpayne@68: * cdef char *cpart jpayne@68: * jpayne@68: * while size == -1 or bytes_read < size: # <<<<<<<<<<<<<< jpayne@68: * chunk_size = 4096 jpayne@68: * if size != -1: jpayne@68: */ jpayne@68: while (1) { jpayne@68: __pyx_t_3 = (__pyx_v_size == -1L); 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jpayne@68: __pyx_t_5 = __pyx_v_chunk_size; jpayne@68: __pyx_t_1 = (__pyx_t_4 < __pyx_t_5); jpayne@68: if (__pyx_t_1) { jpayne@68: __pyx_t_6 = __pyx_t_4; jpayne@68: } else { jpayne@68: __pyx_t_6 = __pyx_t_5; jpayne@68: } jpayne@68: __pyx_v_chunk_size = __pyx_t_6; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":214 jpayne@68: * while size == -1 or bytes_read < size: jpayne@68: * chunk_size = 4096 jpayne@68: * if size != -1: # <<<<<<<<<<<<<< jpayne@68: * chunk_size = min(chunk_size, size - bytes_read) jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":217 jpayne@68: * chunk_size = min(chunk_size, size - bytes_read) jpayne@68: * jpayne@68: * part = PyBytes_FromStringAndSize(NULL, chunk_size) # <<<<<<<<<<<<<< jpayne@68: * cpart = part jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_2 = PyBytes_FromStringAndSize(NULL, __pyx_v_chunk_size); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 217, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_XDECREF_SET(__pyx_v_part, ((PyObject*)__pyx_t_2)); 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jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":223 jpayne@68: * ret = hgetln(cpart, chunk_size+1, self.fp) jpayne@68: * jpayne@68: * if ret < 0: # <<<<<<<<<<<<<< jpayne@68: * IOError(herrno(self.fp), 'failed to read HFile', self.name) jpayne@68: * elif not ret: jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_ret < 0); jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":224 jpayne@68: * jpayne@68: * if ret < 0: jpayne@68: * IOError(herrno(self.fp), 'failed to read HFile', self.name) # <<<<<<<<<<<<<< jpayne@68: * elif not ret: jpayne@68: * break jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyInt_From_int(herrno(__pyx_v_self->fp)); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 224, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_t_8 = PyTuple_New(3); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 224, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_8); jpayne@68: __Pyx_GIVEREF(__pyx_t_2); jpayne@68: if (__Pyx_PyTuple_SET_ITEM(__pyx_t_8, 0, __pyx_t_2)) __PYX_ERR(0, 224, __pyx_L1_error); 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jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":225 jpayne@68: * if ret < 0: jpayne@68: * IOError(herrno(self.fp), 'failed to read HFile', self.name) jpayne@68: * elif not ret: # <<<<<<<<<<<<<< jpayne@68: * break jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_1 = (!(__pyx_v_ret != 0)); jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":226 jpayne@68: * IOError(herrno(self.fp), 'failed to read HFile', self.name) jpayne@68: * elif not ret: jpayne@68: * break # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * bytes_read += ret jpayne@68: */ jpayne@68: goto __pyx_L6_break; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":225 jpayne@68: * if ret < 0: jpayne@68: * IOError(herrno(self.fp), 'failed to read HFile', self.name) jpayne@68: * elif not ret: # <<<<<<<<<<<<<< jpayne@68: * break jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: __pyx_L10:; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":228 jpayne@68: * break jpayne@68: * jpayne@68: * bytes_read += ret # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if ret < chunk_size: jpayne@68: */ jpayne@68: __pyx_v_bytes_read = (__pyx_v_bytes_read + __pyx_v_ret); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":230 jpayne@68: * bytes_read += ret jpayne@68: * jpayne@68: * if ret < chunk_size: # <<<<<<<<<<<<<< jpayne@68: * part = cpart[:ret] jpayne@68: * cpart = part jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_ret < __pyx_v_chunk_size); jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":231 jpayne@68: * jpayne@68: * if ret < chunk_size: jpayne@68: * part = cpart[:ret] # <<<<<<<<<<<<<< jpayne@68: * cpart = part jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyBytes_FromStringAndSize(__pyx_v_cpart + 0, __pyx_v_ret - 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 231, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_DECREF_SET(__pyx_v_part, ((PyObject*)__pyx_t_2)); jpayne@68: __pyx_t_2 = 0; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":232 jpayne@68: * if ret < chunk_size: jpayne@68: * part = cpart[:ret] jpayne@68: * cpart = part # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * parts.append(part) jpayne@68: */ jpayne@68: __pyx_t_7 = __Pyx_PyBytes_AsWritableString(__pyx_v_part); 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if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_b,0}; jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (likely((values[0] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_b)) != 0)) { jpayne@68: (void)__Pyx_Arg_NewRef_FASTCALL(values[0]); jpayne@68: kw_args--; jpayne@68: } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 275, __pyx_L3_error) jpayne@68: else goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "write") < 0)) __PYX_ERR(0, 275, __pyx_L3_error) jpayne@68: } jpayne@68: } else if (unlikely(__pyx_nargs != 1)) { jpayne@68: goto __pyx_L5_argtuple_error; jpayne@68: } else { jpayne@68: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: } jpayne@68: __pyx_v_b = ((PyObject*)values[0]); jpayne@68: } jpayne@68: goto __pyx_L6_skip; jpayne@68: __pyx_L5_argtuple_error:; jpayne@68: __Pyx_RaiseArgtupleInvalid("write", 1, 1, 1, __pyx_nargs); __PYX_ERR(0, 275, __pyx_L3_error) jpayne@68: __pyx_L6_skip:; jpayne@68: goto __pyx_L4_argument_unpacking_done; jpayne@68: __pyx_L3_error:; jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_AddTraceback("pysam.libchtslib.HFile.write", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return NULL; jpayne@68: __pyx_L4_argument_unpacking_done:; jpayne@68: if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_b), (&PyBytes_Type), 1, "b", 1))) __PYX_ERR(0, 275, __pyx_L1_error) jpayne@68: __pyx_r = __pyx_pf_5pysam_10libchtslib_5HFile_42write(((struct __pyx_obj_5pysam_10libchtslib_HFile *)__pyx_v_self), __pyx_v_b); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: goto __pyx_L0; jpayne@68: __pyx_L1_error:; jpayne@68: __pyx_r = NULL; jpayne@68: __pyx_L0:; jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_42write(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, PyObject *__pyx_v_b) { jpayne@68: Py_ssize_t __pyx_v_got; jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_TraceDeclarations jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_t_1; jpayne@68: PyObject *__pyx_t_2 = NULL; jpayne@68: Py_ssize_t __pyx_t_3; jpayne@68: PyObject *__pyx_t_4 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_TraceFrameInit(__pyx_codeobj__24) jpayne@68: __Pyx_RefNannySetupContext("write", 1); jpayne@68: __Pyx_TraceCall("write", __pyx_f[0], 275, 0, __PYX_ERR(0, 275, __pyx_L1_error)); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":276 jpayne@68: * jpayne@68: * def write(self, bytes b): jpayne@68: * if self.fp == NULL: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('operation on closed HFile') jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_self->fp == NULL); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":277 jpayne@68: * def write(self, bytes b): jpayne@68: * if self.fp == NULL: jpayne@68: * raise IOError('operation on closed HFile') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * got = hwrite(self.fp, b, len(b)) jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_tuple__5, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 277, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 277, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":276 jpayne@68: * jpayne@68: * def write(self, bytes b): jpayne@68: * if self.fp == NULL: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('operation on closed HFile') jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":279 jpayne@68: * raise IOError('operation on closed HFile') jpayne@68: * jpayne@68: * got = hwrite(self.fp, b, len(b)) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if got < 0: jpayne@68: */ jpayne@68: if (unlikely(__pyx_v_b == Py_None)) { jpayne@68: PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()"); jpayne@68: __PYX_ERR(0, 279, __pyx_L1_error) jpayne@68: } jpayne@68: __pyx_t_3 = __Pyx_PyBytes_GET_SIZE(__pyx_v_b); if (unlikely(__pyx_t_3 == ((Py_ssize_t)-1))) __PYX_ERR(0, 279, __pyx_L1_error) jpayne@68: __pyx_v_got = hwrite(__pyx_v_self->fp, ((void *)__pyx_v_b), __pyx_t_3); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":281 jpayne@68: * got = hwrite(self.fp, b, len(b)) jpayne@68: * jpayne@68: * if got < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError(herrno(self.fp), 'write failed on HFile', self.name) jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_got < 0); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":282 jpayne@68: * jpayne@68: * if got < 0: jpayne@68: * raise IOError(herrno(self.fp), 'write failed on HFile', self.name) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * return got jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyInt_From_int(herrno(__pyx_v_self->fp)); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 282, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_t_4 = PyTuple_New(3); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 282, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_4); jpayne@68: __Pyx_GIVEREF(__pyx_t_2); jpayne@68: if (__Pyx_PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_2)) __PYX_ERR(0, 282, __pyx_L1_error); jpayne@68: __Pyx_INCREF(__pyx_kp_u_write_failed_on_HFile); jpayne@68: __Pyx_GIVEREF(__pyx_kp_u_write_failed_on_HFile); jpayne@68: if (__Pyx_PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_kp_u_write_failed_on_HFile)) __PYX_ERR(0, 282, __pyx_L1_error); jpayne@68: __Pyx_INCREF(__pyx_v_self->name); jpayne@68: __Pyx_GIVEREF(__pyx_v_self->name); jpayne@68: if (__Pyx_PyTuple_SET_ITEM(__pyx_t_4, 2, __pyx_v_self->name)) __PYX_ERR(0, 282, __pyx_L1_error); jpayne@68: __pyx_t_2 = 0; jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_t_4, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 282, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 282, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":281 jpayne@68: * got = hwrite(self.fp, b, len(b)) jpayne@68: * jpayne@68: * if got < 0: # <<<<<<<<<<<<<< jpayne@68: * raise IOError(herrno(self.fp), 'write failed on HFile', self.name) jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":284 jpayne@68: * raise IOError(herrno(self.fp), 'write failed on HFile', self.name) jpayne@68: * jpayne@68: * return got # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def writelines(self, lines): jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __pyx_t_2 = PyInt_FromSsize_t(__pyx_v_got); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 284, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_r = __pyx_t_2; jpayne@68: __pyx_t_2 = 0; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":275 jpayne@68: * return self.fp != NULL and 'w' in self.mode jpayne@68: * jpayne@68: * def write(self, bytes b): # <<<<<<<<<<<<<< jpayne@68: * if self.fp == NULL: jpayne@68: * raise IOError('operation on closed HFile') jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_2); jpayne@68: __Pyx_XDECREF(__pyx_t_4); jpayne@68: __Pyx_AddTraceback("pysam.libchtslib.HFile.write", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_TraceReturn(__pyx_r, 0); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":286 jpayne@68: * return got jpayne@68: * jpayne@68: * def writelines(self, lines): # <<<<<<<<<<<<<< jpayne@68: * for line in lines: jpayne@68: * self.write(line) jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_5HFile_45writelines(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: PyDoc_STRVAR(__pyx_doc_5pysam_10libchtslib_5HFile_44writelines, "HFile.writelines(self, lines)"); jpayne@68: static PyMethodDef __pyx_mdef_5pysam_10libchtslib_5HFile_45writelines = {"writelines", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_45writelines, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_44writelines}; jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_5HFile_45writelines(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: PyObject *__pyx_v_lines = 0; jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[1] = {0}; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("writelines (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_lines,0}; jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (likely((values[0] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_lines)) != 0)) { jpayne@68: (void)__Pyx_Arg_NewRef_FASTCALL(values[0]); jpayne@68: kw_args--; jpayne@68: } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 286, __pyx_L3_error) jpayne@68: else goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "writelines") < 0)) __PYX_ERR(0, 286, __pyx_L3_error) jpayne@68: } jpayne@68: } else if (unlikely(__pyx_nargs != 1)) { jpayne@68: goto __pyx_L5_argtuple_error; jpayne@68: } else { jpayne@68: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: } jpayne@68: __pyx_v_lines = values[0]; jpayne@68: } jpayne@68: goto __pyx_L6_skip; jpayne@68: __pyx_L5_argtuple_error:; jpayne@68: __Pyx_RaiseArgtupleInvalid("writelines", 1, 1, 1, __pyx_nargs); __PYX_ERR(0, 286, __pyx_L3_error) jpayne@68: __pyx_L6_skip:; jpayne@68: goto __pyx_L4_argument_unpacking_done; jpayne@68: __pyx_L3_error:; jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; 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jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (likely((values[0] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_pyx_state)) != 0)) { jpayne@68: (void)__Pyx_Arg_NewRef_FASTCALL(values[0]); jpayne@68: kw_args--; jpayne@68: } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 3, __pyx_L3_error) jpayne@68: else goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "__setstate_cython__") < 0)) __PYX_ERR(1, 3, __pyx_L3_error) jpayne@68: } jpayne@68: } else if (unlikely(__pyx_nargs != 1)) { jpayne@68: goto __pyx_L5_argtuple_error; jpayne@68: } else { jpayne@68: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: } jpayne@68: __pyx_v___pyx_state = values[0]; jpayne@68: } jpayne@68: goto __pyx_L6_skip; jpayne@68: __pyx_L5_argtuple_error:; jpayne@68: __Pyx_RaiseArgtupleInvalid("__setstate_cython__", 1, 1, 1, __pyx_nargs); __PYX_ERR(1, 3, __pyx_L3_error) jpayne@68: __pyx_L6_skip:; jpayne@68: goto __pyx_L4_argument_unpacking_done; jpayne@68: __pyx_L3_error:; jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_AddTraceback("pysam.libchtslib.HFile.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return NULL; jpayne@68: __pyx_L4_argument_unpacking_done:; jpayne@68: __pyx_r = __pyx_pf_5pysam_10libchtslib_5HFile_48__setstate_cython__(((struct __pyx_obj_5pysam_10libchtslib_HFile *)__pyx_v_self), __pyx_v___pyx_state); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_48__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_TraceDeclarations jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_TraceFrameInit(__pyx_codeobj__27) jpayne@68: __Pyx_RefNannySetupContext("__setstate_cython__", 1); jpayne@68: __Pyx_TraceCall("__setstate_cython__", __pyx_f[1], 3, 0, __PYX_ERR(1, 3, __pyx_L1_error)); jpayne@68: jpayne@68: /* "(tree fragment)":4 jpayne@68: * raise TypeError, "self.fp cannot be converted to a Python object for pickling" jpayne@68: * def __setstate_cython__(self, __pyx_state): jpayne@68: * raise TypeError, "self.fp cannot be converted to a Python object for pickling" # <<<<<<<<<<<<<< jpayne@68: */ jpayne@68: __Pyx_Raise(__pyx_builtin_TypeError, __pyx_kp_s_self_fp_cannot_be_converted_to_a, 0, 0); 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/*proto*/ jpayne@68: PyDoc_STRVAR(__pyx_doc_5pysam_10libchtslib_13CallableValue___init__, "CallableValue.__init__(self, value)"); jpayne@68: static PyMethodDef __pyx_mdef_5pysam_10libchtslib_13CallableValue_1__init__ = {"__init__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_13CallableValue_1__init__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_13CallableValue___init__}; jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_13CallableValue_1__init__(PyObject *__pyx_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: PyObject *__pyx_v_self = 0; jpayne@68: PyObject *__pyx_v_value = 0; jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[2] = {0,0}; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__init__ (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_self,&__pyx_n_s_value,0}; jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 2: values[1] = __Pyx_Arg_FASTCALL(__pyx_args, 1); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (likely((values[0] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_self)) != 0)) { jpayne@68: (void)__Pyx_Arg_NewRef_FASTCALL(values[0]); jpayne@68: kw_args--; jpayne@68: } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 298, __pyx_L3_error) jpayne@68: else goto __pyx_L5_argtuple_error; jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 1: jpayne@68: if (likely((values[1] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_value)) != 0)) { jpayne@68: (void)__Pyx_Arg_NewRef_FASTCALL(values[1]); jpayne@68: kw_args--; jpayne@68: } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 298, __pyx_L3_error) jpayne@68: else { jpayne@68: __Pyx_RaiseArgtupleInvalid("__init__", 1, 2, 2, 1); __PYX_ERR(0, 298, __pyx_L3_error) jpayne@68: } jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "__init__") < 0)) __PYX_ERR(0, 298, __pyx_L3_error) jpayne@68: } jpayne@68: } else if (unlikely(__pyx_nargs != 2)) { jpayne@68: goto __pyx_L5_argtuple_error; jpayne@68: } else { jpayne@68: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: values[1] = __Pyx_Arg_FASTCALL(__pyx_args, 1); jpayne@68: } jpayne@68: __pyx_v_self = values[0]; jpayne@68: __pyx_v_value = values[1]; jpayne@68: } jpayne@68: goto __pyx_L6_skip; jpayne@68: __pyx_L5_argtuple_error:; jpayne@68: __Pyx_RaiseArgtupleInvalid("__init__", 1, 2, 2, __pyx_nargs); __PYX_ERR(0, 298, __pyx_L3_error) jpayne@68: __pyx_L6_skip:; jpayne@68: goto __pyx_L4_argument_unpacking_done; jpayne@68: __pyx_L3_error:; jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_AddTraceback("pysam.libchtslib.CallableValue.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return NULL; jpayne@68: __pyx_L4_argument_unpacking_done:; jpayne@68: __pyx_r = __pyx_pf_5pysam_10libchtslib_13CallableValue___init__(__pyx_self, __pyx_v_self, __pyx_v_value); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_13CallableValue___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_value) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_TraceDeclarations jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_TraceFrameInit(__pyx_codeobj__28) jpayne@68: __Pyx_RefNannySetupContext("__init__", 1); jpayne@68: __Pyx_TraceCall("__init__", __pyx_f[0], 298, 0, __PYX_ERR(0, 298, __pyx_L1_error)); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":299 jpayne@68: * class CallableValue(object): jpayne@68: * def __init__(self, value): jpayne@68: * self.value = value # <<<<<<<<<<<<<< jpayne@68: * def __call__(self): jpayne@68: * return self.value jpayne@68: */ jpayne@68: if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_value, __pyx_v_value) < 0) __PYX_ERR(0, 299, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":298 jpayne@68: * jpayne@68: * class CallableValue(object): jpayne@68: * def __init__(self, value): # <<<<<<<<<<<<<< jpayne@68: * self.value = value jpayne@68: * def __call__(self): jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_r = Py_None; __Pyx_INCREF(Py_None); 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/*proto*/ jpayne@68: PyDoc_STRVAR(__pyx_doc_5pysam_10libchtslib_13CallableValue_2__call__, "CallableValue.__call__(self)"); jpayne@68: static PyMethodDef __pyx_mdef_5pysam_10libchtslib_13CallableValue_3__call__ = {"__call__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_13CallableValue_3__call__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_13CallableValue_2__call__}; jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_13CallableValue_3__call__(PyObject *__pyx_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: PyObject *__pyx_v_self = 0; jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[1] = {0}; 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jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__bool__ (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_self,0}; jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); 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jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":345 jpayne@68: * if self.htsfile: jpayne@68: * if hts_flush(self.htsfile) < 0: jpayne@68: * raise OSError(errno, f'Flushing {type(self).__name__} failed', force_str(self.filename)) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def check_truncation(self, ignore_truncation=False): jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyInt_From_int(errno); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 345, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_t_3 = PyTuple_New(3); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 345, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: __pyx_t_4 = 0; jpayne@68: __pyx_t_5 = 127; jpayne@68: __Pyx_INCREF(__pyx_kp_u_Flushing); jpayne@68: __pyx_t_4 += 9; jpayne@68: __Pyx_GIVEREF(__pyx_kp_u_Flushing); jpayne@68: PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_kp_u_Flushing); jpayne@68: __pyx_t_6 = __Pyx_PyObject_GetAttrStr(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))), __pyx_n_s_name_2); 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if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 345, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_6); jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: __Pyx_Raise(__pyx_t_6, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; jpayne@68: __PYX_ERR(0, 345, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":344 jpayne@68: * """Flush any buffered data to the underlying output stream.""" jpayne@68: * if self.htsfile: jpayne@68: * if hts_flush(self.htsfile) < 0: # <<<<<<<<<<<<<< jpayne@68: * raise OSError(errno, f'Flushing {type(self).__name__} failed', force_str(self.filename)) jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":343 jpayne@68: * def flush(self): jpayne@68: * """Flush any buffered data to the underlying output stream.""" jpayne@68: * if self.htsfile: # <<<<<<<<<<<<<< jpayne@68: * if hts_flush(self.htsfile) < 0: jpayne@68: * raise OSError(errno, f'Flushing {type(self).__name__} failed', force_str(self.filename)) jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":341 jpayne@68: * self.htsfile = NULL jpayne@68: * jpayne@68: * def flush(self): # <<<<<<<<<<<<<< jpayne@68: * """Flush any buffered data to the underlying output stream.""" jpayne@68: * if self.htsfile: jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_r = Py_None; __Pyx_INCREF(Py_None); jpayne@68: goto __pyx_L0; jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_2); jpayne@68: __Pyx_XDECREF(__pyx_t_3); jpayne@68: __Pyx_XDECREF(__pyx_t_6); jpayne@68: __Pyx_XDECREF(__pyx_t_7); jpayne@68: __Pyx_AddTraceback("pysam.libchtslib.HTSFile.flush", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __pyx_L0:; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_TraceReturn(__pyx_r, 0); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":347 jpayne@68: * raise OSError(errno, f'Flushing {type(self).__name__} failed', force_str(self.filename)) jpayne@68: * jpayne@68: * def check_truncation(self, ignore_truncation=False): # <<<<<<<<<<<<<< jpayne@68: * """Check if file is truncated.""" jpayne@68: * if not self.htsfile: jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_7HTSFile_9check_truncation(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: PyDoc_STRVAR(__pyx_doc_5pysam_10libchtslib_7HTSFile_8check_truncation, "HTSFile.check_truncation(self, ignore_truncation=False)\nCheck if file is truncated."); jpayne@68: static PyMethodDef __pyx_mdef_5pysam_10libchtslib_7HTSFile_9check_truncation = {"check_truncation", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_9check_truncation, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_8check_truncation}; jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_7HTSFile_9check_truncation(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: PyObject *__pyx_v_ignore_truncation = 0; jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[1] = {0}; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("check_truncation (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_ignore_truncation,0}; jpayne@68: values[0] = __Pyx_Arg_NewRef_FASTCALL(((PyObject *)Py_False)); jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (kw_args > 0) { jpayne@68: PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_ignore_truncation); jpayne@68: if (value) { values[0] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 347, __pyx_L3_error) jpayne@68: } jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "check_truncation") < 0)) __PYX_ERR(0, 347, __pyx_L3_error) jpayne@68: } jpayne@68: } else { jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: } jpayne@68: __pyx_v_ignore_truncation = values[0]; jpayne@68: } jpayne@68: goto __pyx_L6_skip; jpayne@68: __pyx_L5_argtuple_error:; jpayne@68: __Pyx_RaiseArgtupleInvalid("check_truncation", 0, 0, 1, __pyx_nargs); __PYX_ERR(0, 347, __pyx_L3_error) jpayne@68: __pyx_L6_skip:; jpayne@68: goto __pyx_L4_argument_unpacking_done; jpayne@68: __pyx_L3_error:; jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_AddTraceback("pysam.libchtslib.HTSFile.check_truncation", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return NULL; jpayne@68: __pyx_L4_argument_unpacking_done:; jpayne@68: __pyx_r = __pyx_pf_5pysam_10libchtslib_7HTSFile_8check_truncation(((struct __pyx_obj_5pysam_10libchtslib_HTSFile *)__pyx_v_self), __pyx_v_ignore_truncation); 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jpayne@68: PyObject *__pyx_t_2 = NULL; jpayne@68: PyObject *__pyx_t_3 = NULL; jpayne@68: PyObject *__pyx_t_4 = NULL; jpayne@68: unsigned int __pyx_t_5; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_TraceFrameInit(__pyx_codeobj__40) jpayne@68: __Pyx_RefNannySetupContext("reset", 1); jpayne@68: __Pyx_TraceCall("reset", __pyx_f[0], 472, 0, __PYX_ERR(0, 472, __pyx_L1_error)); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":481 jpayne@68: * jpayne@68: * """ jpayne@68: * return self.seek(self.start_offset) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def seek(self, uint64_t offset, int whence=io.SEEK_SET): jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __pyx_t_2 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_seek); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 481, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_t_3 = __Pyx_PyInt_From_int64_t(__pyx_v_self->start_offset); 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/*proto*/ jpayne@68: PyDoc_STRVAR(__pyx_doc_5pysam_10libchtslib_7HTSFile_16seek, "HTSFile.seek(self, uint64_t offset, int whence=io.SEEK_SET)\nmove file pointer to position *offset*, see :meth:`pysam.HTSFile.tell`."); jpayne@68: static PyMethodDef __pyx_mdef_5pysam_10libchtslib_7HTSFile_17seek = {"seek", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_17seek, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_16seek}; jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_7HTSFile_17seek(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: uint64_t __pyx_v_offset; jpayne@68: int __pyx_v_whence; jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[2] = {0,0}; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("seek (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_offset,&__pyx_n_s_whence,0}; jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 2: values[1] = __Pyx_Arg_FASTCALL(__pyx_args, 1); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (likely((values[0] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_offset)) != 0)) { jpayne@68: (void)__Pyx_Arg_NewRef_FASTCALL(values[0]); jpayne@68: kw_args--; jpayne@68: } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 483, __pyx_L3_error) jpayne@68: else goto __pyx_L5_argtuple_error; jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 1: jpayne@68: if (kw_args > 0) { jpayne@68: PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_whence); jpayne@68: if (value) { values[1] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 483, __pyx_L3_error) jpayne@68: } jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "seek") < 0)) __PYX_ERR(0, 483, __pyx_L3_error) jpayne@68: } jpayne@68: } else { jpayne@68: switch (__pyx_nargs) { jpayne@68: case 2: values[1] = __Pyx_Arg_FASTCALL(__pyx_args, 1); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: } jpayne@68: __pyx_v_offset = __Pyx_PyInt_As_uint64_t(values[0]); if (unlikely((__pyx_v_offset == ((uint64_t)-1)) && PyErr_Occurred())) __PYX_ERR(0, 483, __pyx_L3_error) jpayne@68: if (values[1]) { jpayne@68: __pyx_v_whence = __Pyx_PyInt_As_int(values[1]); if (unlikely((__pyx_v_whence == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 483, __pyx_L3_error) jpayne@68: } else { jpayne@68: __pyx_v_whence = __pyx_k__41; jpayne@68: } jpayne@68: } jpayne@68: goto __pyx_L6_skip; jpayne@68: __pyx_L5_argtuple_error:; jpayne@68: __Pyx_RaiseArgtupleInvalid("seek", 0, 1, 2, __pyx_nargs); __PYX_ERR(0, 483, __pyx_L3_error) jpayne@68: __pyx_L6_skip:; jpayne@68: goto __pyx_L4_argument_unpacking_done; jpayne@68: __pyx_L3_error:; jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_AddTraceback("pysam.libchtslib.HTSFile.seek", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return NULL; jpayne@68: __pyx_L4_argument_unpacking_done:; jpayne@68: __pyx_r = __pyx_pf_5pysam_10libchtslib_7HTSFile_16seek(((struct __pyx_obj_5pysam_10libchtslib_HTSFile *)__pyx_v_self), __pyx_v_offset, __pyx_v_whence); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); 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jpayne@68: __Pyx_TraceCall("seek", __pyx_f[0], 483, 0, __PYX_ERR(0, 483, __pyx_L1_error)); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":485 jpayne@68: * def seek(self, uint64_t offset, int whence=io.SEEK_SET): jpayne@68: * """move file pointer to position *offset*, see :meth:`pysam.HTSFile.tell`.""" jpayne@68: * if not self.is_open: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError('I/O operation on closed file') jpayne@68: * if self.is_stream: jpayne@68: */ jpayne@68: __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_is_open); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 485, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely((__pyx_t_2 < 0))) __PYX_ERR(0, 485, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@68: __pyx_t_3 = (!__pyx_t_2); jpayne@68: if (unlikely(__pyx_t_3)) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":486 jpayne@68: * """move file pointer to position *offset*, see :meth:`pysam.HTSFile.tell`.""" jpayne@68: * if not self.is_open: jpayne@68: * raise ValueError('I/O operation on closed file') # <<<<<<<<<<<<<< jpayne@68: * if self.is_stream: jpayne@68: * raise IOError('seek not available in streams') jpayne@68: */ jpayne@68: __pyx_t_1 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__43, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 486, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __Pyx_Raise(__pyx_t_1, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@68: __PYX_ERR(0, 486, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":485 jpayne@68: * def seek(self, uint64_t offset, int whence=io.SEEK_SET): jpayne@68: * """move file pointer to position *offset*, see :meth:`pysam.HTSFile.tell`.""" jpayne@68: * if not self.is_open: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError('I/O operation on closed file') jpayne@68: * if self.is_stream: jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":487 jpayne@68: * if not self.is_open: jpayne@68: * raise ValueError('I/O operation on closed file') jpayne@68: * if self.is_stream: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('seek not available in streams') jpayne@68: * jpayne@68: */ jpayne@68: if (unlikely(__pyx_v_self->is_stream)) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":488 jpayne@68: * raise ValueError('I/O operation on closed file') jpayne@68: * if self.is_stream: jpayne@68: * raise IOError('seek not available in streams') # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * whence = libc_whence_from_io(whence) jpayne@68: */ jpayne@68: __pyx_t_1 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_tuple__44, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 488, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __Pyx_Raise(__pyx_t_1, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@68: __PYX_ERR(0, 488, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":487 jpayne@68: * if not self.is_open: jpayne@68: * raise ValueError('I/O operation on closed file') jpayne@68: * if self.is_stream: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('seek not available in streams') jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":490 jpayne@68: * raise IOError('seek not available in streams') jpayne@68: * jpayne@68: * whence = libc_whence_from_io(whence) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * cdef int64_t ret jpayne@68: */ jpayne@68: __pyx_t_4 = __pyx_f_5pysam_9libcutils_libc_whence_from_io(__pyx_v_whence); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 490, __pyx_L1_error) jpayne@68: __pyx_v_whence = __pyx_t_4; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":493 jpayne@68: * jpayne@68: * cdef int64_t ret jpayne@68: * if self.htsfile.format.compression == bgzf: # <<<<<<<<<<<<<< jpayne@68: * with nogil: jpayne@68: * ret = bgzf_seek(hts_get_bgzfp(self.htsfile), offset, whence) jpayne@68: */ jpayne@68: switch (__pyx_v_self->htsfile->format.compression) { jpayne@68: case bgzf: jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":494 jpayne@68: * cdef int64_t ret jpayne@68: * if self.htsfile.format.compression == bgzf: jpayne@68: * with nogil: # <<<<<<<<<<<<<< jpayne@68: * ret = bgzf_seek(hts_get_bgzfp(self.htsfile), offset, whence) jpayne@68: * elif self.htsfile.format.compression == no_compression: jpayne@68: */ jpayne@68: { jpayne@68: #ifdef WITH_THREAD jpayne@68: PyThreadState *_save; 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/*proto*/ jpayne@68: PyDoc_STRVAR(__pyx_doc_5pysam_10libchtslib_7HTSFile_18tell, "HTSFile.tell(self)\nreturn current file position, see :meth:`pysam.HTSFile.seek`."); jpayne@68: static PyMethodDef __pyx_mdef_5pysam_10libchtslib_7HTSFile_19tell = {"tell", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_19tell, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_18tell}; jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_7HTSFile_19tell(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("tell (wrapper)", 0); 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jpayne@68: Py_BLOCK_THREADS jpayne@68: #endif jpayne@68: goto __pyx_L8; jpayne@68: } jpayne@68: __pyx_L8:; jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":511 jpayne@68: * jpayne@68: * cdef int64_t ret jpayne@68: * if self.htsfile.format.compression == bgzf: # <<<<<<<<<<<<<< jpayne@68: * with nogil: jpayne@68: * ret = bgzf_tell(hts_get_bgzfp(self.htsfile)) jpayne@68: */ jpayne@68: goto __pyx_L5; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":514 jpayne@68: * with nogil: jpayne@68: * ret = bgzf_tell(hts_get_bgzfp(self.htsfile)) jpayne@68: * elif self.htsfile.format.compression == no_compression: # <<<<<<<<<<<<<< jpayne@68: * ret = htell(self.htsfile.fp.hfile) jpayne@68: * elif self.htsfile.format.format == cram: jpayne@68: */ jpayne@68: __pyx_t_3 = (__pyx_v_self->htsfile->format.compression == no_compression); jpayne@68: if (__pyx_t_3) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":515 jpayne@68: * ret = bgzf_tell(hts_get_bgzfp(self.htsfile)) jpayne@68: * elif self.htsfile.format.compression == no_compression: jpayne@68: * ret = htell(self.htsfile.fp.hfile) # <<<<<<<<<<<<<< jpayne@68: * elif self.htsfile.format.format == cram: jpayne@68: * with nogil: jpayne@68: */ jpayne@68: __pyx_v_ret = htell(__pyx_v_self->htsfile->fp.hfile); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":514 jpayne@68: * with nogil: jpayne@68: * ret = bgzf_tell(hts_get_bgzfp(self.htsfile)) jpayne@68: * elif self.htsfile.format.compression == no_compression: # <<<<<<<<<<<<<< jpayne@68: * ret = htell(self.htsfile.fp.hfile) jpayne@68: * elif self.htsfile.format.format == cram: jpayne@68: */ jpayne@68: goto __pyx_L5; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":516 jpayne@68: * elif self.htsfile.format.compression == no_compression: jpayne@68: * ret = htell(self.htsfile.fp.hfile) jpayne@68: * elif self.htsfile.format.format == cram: # <<<<<<<<<<<<<< jpayne@68: * with nogil: jpayne@68: * ret = htell(cram_fd_get_fp(self.htsfile.fp.cram)) jpayne@68: */ jpayne@68: __pyx_t_3 = (__pyx_v_self->htsfile->format.format == cram); jpayne@68: if (likely(__pyx_t_3)) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":517 jpayne@68: * ret = htell(self.htsfile.fp.hfile) jpayne@68: * elif self.htsfile.format.format == cram: jpayne@68: * with nogil: # <<<<<<<<<<<<<< jpayne@68: * ret = htell(cram_fd_get_fp(self.htsfile.fp.cram)) jpayne@68: * else: jpayne@68: */ jpayne@68: { jpayne@68: #ifdef WITH_THREAD jpayne@68: PyThreadState *_save; jpayne@68: _save = NULL; jpayne@68: Py_UNBLOCK_THREADS jpayne@68: __Pyx_FastGIL_Remember(); jpayne@68: #endif jpayne@68: /*try:*/ { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":518 jpayne@68: * elif self.htsfile.format.format == cram: jpayne@68: * with nogil: jpayne@68: * ret = htell(cram_fd_get_fp(self.htsfile.fp.cram)) # <<<<<<<<<<<<<< jpayne@68: * else: jpayne@68: * raise NotImplementedError("seek not implemented in files compressed by method {}".format( jpayne@68: */ jpayne@68: __pyx_v_ret = htell(cram_fd_get_fp(__pyx_v_self->htsfile->fp.cram)); jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":517 jpayne@68: * ret = htell(self.htsfile.fp.hfile) jpayne@68: * elif self.htsfile.format.format == cram: jpayne@68: * with nogil: # <<<<<<<<<<<<<< jpayne@68: * ret = htell(cram_fd_get_fp(self.htsfile.fp.cram)) jpayne@68: * else: jpayne@68: */ jpayne@68: /*finally:*/ { jpayne@68: /*normal exit:*/{ jpayne@68: #ifdef WITH_THREAD jpayne@68: __Pyx_FastGIL_Forget(); jpayne@68: Py_BLOCK_THREADS jpayne@68: #endif jpayne@68: goto __pyx_L11; 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NULL: # <<<<<<<<<<<<<< jpayne@68: * cdef char *cfilename jpayne@68: * cdef char *cmode = self.mode jpayne@68: */ jpayne@68: jpayne@68: static htsFile *__pyx_f_5pysam_10libchtslib_7HTSFile__open_htsfile(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self) { jpayne@68: char *__pyx_v_cfilename; jpayne@68: char *__pyx_v_cmode; jpayne@68: int __pyx_v_fd; jpayne@68: int __pyx_v_dup_fd; jpayne@68: int __pyx_v_threads; jpayne@68: htsFile *__pyx_v_htsfile; jpayne@68: PyObject *__pyx_v_smode = NULL; jpayne@68: hFILE *__pyx_v_hfile; jpayne@68: PyObject *__pyx_v_filename = NULL; jpayne@68: htsFile *__pyx_r; jpayne@68: __Pyx_TraceDeclarations jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: char *__pyx_t_1; jpayne@68: PyObject *__pyx_t_2 = NULL; jpayne@68: int __pyx_t_3; jpayne@68: int __pyx_t_4; jpayne@68: PyObject *__pyx_t_5 = NULL; jpayne@68: PyObject *__pyx_t_6 = NULL; jpayne@68: unsigned int __pyx_t_7; jpayne@68: PyObject *__pyx_t_8 = NULL; jpayne@68: PyObject *__pyx_t_9 = NULL; jpayne@68: PyObject *__pyx_t_10 = NULL; jpayne@68: PyObject *__pyx_t_11 = NULL; jpayne@68: PyObject *__pyx_t_12 = NULL; jpayne@68: PyObject *__pyx_t_13 = NULL; jpayne@68: PyObject *__pyx_t_14 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_RefNannySetupContext("_open_htsfile", 1); jpayne@68: __Pyx_TraceCall("_open_htsfile", __pyx_f[0], 525, 0, __PYX_ERR(0, 525, __pyx_L1_error)); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":527 jpayne@68: * cdef htsFile *_open_htsfile(self) except? 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jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":544 jpayne@68: * fd = self.filename.fileno() jpayne@68: * jpayne@68: * if self.duplicate_filehandle: # <<<<<<<<<<<<<< jpayne@68: * dup_fd = dup(fd) jpayne@68: * else: jpayne@68: */ jpayne@68: goto __pyx_L9; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":547 jpayne@68: * dup_fd = dup(fd) jpayne@68: * else: jpayne@68: * dup_fd = fd # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * # Replicate mode normalization done in hts_open_format jpayne@68: */ jpayne@68: /*else*/ { jpayne@68: __pyx_v_dup_fd = __pyx_v_fd; jpayne@68: } jpayne@68: __pyx_L9:; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":550 jpayne@68: * jpayne@68: * # Replicate mode normalization done in hts_open_format jpayne@68: * smode = self.mode.replace(b'b', b'').replace(b'c', b'') # <<<<<<<<<<<<<< jpayne@68: * if b'b' in self.mode: jpayne@68: * smode += b'b' jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_self->mode, __pyx_n_s_replace); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 550, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); 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if (unlikely((__pyx_t_4 < 0))) __PYX_ERR(0, 551, __pyx_L1_error) jpayne@68: if (__pyx_t_4) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":552 jpayne@68: * smode = self.mode.replace(b'b', b'').replace(b'c', b'') jpayne@68: * if b'b' in self.mode: jpayne@68: * smode += b'b' # <<<<<<<<<<<<<< jpayne@68: * elif b'c' in self.mode: jpayne@68: * smode += b'c' jpayne@68: */ jpayne@68: __pyx_t_5 = PyNumber_InPlaceAdd(__pyx_v_smode, __pyx_n_b_b); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 552, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_5); jpayne@68: __Pyx_DECREF_SET(__pyx_v_smode, __pyx_t_5); jpayne@68: __pyx_t_5 = 0; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":551 jpayne@68: * # Replicate mode normalization done in hts_open_format jpayne@68: * smode = self.mode.replace(b'b', b'').replace(b'c', b'') jpayne@68: * if b'b' in self.mode: # <<<<<<<<<<<<<< jpayne@68: * smode += b'b' jpayne@68: * elif b'c' in self.mode: jpayne@68: */ jpayne@68: goto __pyx_L10; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":553 jpayne@68: * if b'b' in self.mode: jpayne@68: * smode += b'b' jpayne@68: * elif b'c' in self.mode: # <<<<<<<<<<<<<< jpayne@68: * smode += b'c' jpayne@68: * cmode = smode jpayne@68: */ jpayne@68: __pyx_t_4 = (__Pyx_PySequence_ContainsTF(__pyx_n_b_c, __pyx_v_self->mode, Py_EQ)); 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if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 559, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_5); jpayne@68: __Pyx_Raise(__pyx_t_5, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; jpayne@68: __PYX_ERR(0, 559, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":558 jpayne@68: * jpayne@68: * hfile = hdopen(dup_fd, cmode) jpayne@68: * if hfile == NULL: # <<<<<<<<<<<<<< jpayne@68: * raise IOError('Cannot create hfile') jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":561 jpayne@68: * raise IOError('Cannot create hfile') jpayne@68: * jpayne@68: * try: # <<<<<<<<<<<<<< jpayne@68: * # filename.name can be an int jpayne@68: * filename = str(self.filename.name) jpayne@68: */ jpayne@68: { jpayne@68: __Pyx_PyThreadState_declare jpayne@68: __Pyx_PyThreadState_assign jpayne@68: __Pyx_ExceptionSave(&__pyx_t_8, &__pyx_t_9, &__pyx_t_10); jpayne@68: __Pyx_XGOTREF(__pyx_t_8); jpayne@68: __Pyx_XGOTREF(__pyx_t_9); jpayne@68: __Pyx_XGOTREF(__pyx_t_10); 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jpayne@68: __Pyx_XGIVEREF(__pyx_t_8); jpayne@68: __Pyx_XGIVEREF(__pyx_t_9); jpayne@68: __Pyx_XGIVEREF(__pyx_t_10); jpayne@68: __Pyx_ExceptionReset(__pyx_t_8, __pyx_t_9, __pyx_t_10); jpayne@68: goto __pyx_L1_error; jpayne@68: __pyx_L13_exception_handled:; jpayne@68: __Pyx_XGIVEREF(__pyx_t_8); jpayne@68: __Pyx_XGIVEREF(__pyx_t_9); jpayne@68: __Pyx_XGIVEREF(__pyx_t_10); jpayne@68: __Pyx_ExceptionReset(__pyx_t_8, __pyx_t_9, __pyx_t_10); jpayne@68: __pyx_L17_try_end:; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":567 jpayne@68: * filename = ''.format(fd) jpayne@68: * jpayne@68: * filename = encode_filename(filename) # <<<<<<<<<<<<<< jpayne@68: * cfilename = filename jpayne@68: * with nogil: jpayne@68: */ jpayne@68: __pyx_t_6 = __pyx_f_5pysam_9libcutils_encode_filename(__pyx_v_filename); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 567, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_6); jpayne@68: __Pyx_DECREF_SET(__pyx_v_filename, __pyx_t_6); jpayne@68: __pyx_t_6 = 0; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":568 jpayne@68: * jpayne@68: * filename = encode_filename(filename) jpayne@68: * cfilename = filename # <<<<<<<<<<<<<< jpayne@68: * with nogil: jpayne@68: * htsfile = hts_hopen(hfile, cfilename, cmode) jpayne@68: */ jpayne@68: __pyx_t_1 = __Pyx_PyObject_AsWritableString(__pyx_v_filename); if (unlikely((!__pyx_t_1) && PyErr_Occurred())) __PYX_ERR(0, 568, __pyx_L1_error) jpayne@68: __pyx_v_cfilename = __pyx_t_1; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":569 jpayne@68: * filename = encode_filename(filename) jpayne@68: * cfilename = filename jpayne@68: * with nogil: # <<<<<<<<<<<<<< jpayne@68: * htsfile = hts_hopen(hfile, cfilename, cmode) jpayne@68: * if htsfile != NULL: jpayne@68: */ jpayne@68: { jpayne@68: #ifdef WITH_THREAD jpayne@68: PyThreadState *_save; jpayne@68: _save = NULL; jpayne@68: Py_UNBLOCK_THREADS jpayne@68: __Pyx_FastGIL_Remember(); jpayne@68: #endif jpayne@68: /*try:*/ { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":570 jpayne@68: * cfilename = filename jpayne@68: * with nogil: jpayne@68: * htsfile = hts_hopen(hfile, cfilename, cmode) # <<<<<<<<<<<<<< jpayne@68: * if htsfile != NULL: jpayne@68: * hts_set_threads(htsfile, threads) jpayne@68: */ jpayne@68: __pyx_v_htsfile = hts_hopen(__pyx_v_hfile, __pyx_v_cfilename, __pyx_v_cmode); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":571 jpayne@68: * with nogil: jpayne@68: * htsfile = hts_hopen(hfile, cfilename, cmode) jpayne@68: * if htsfile != NULL: # <<<<<<<<<<<<<< jpayne@68: * hts_set_threads(htsfile, threads) jpayne@68: * return htsfile jpayne@68: */ jpayne@68: __pyx_t_4 = (__pyx_v_htsfile != NULL); 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jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[1] = {0}; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("add_hts_options (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_format_options,0}; jpayne@68: values[0] = __Pyx_Arg_NewRef_FASTCALL(((PyObject *)Py_None)); jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (kw_args > 0) { jpayne@68: PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_format_options); jpayne@68: if (value) { values[0] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 575, __pyx_L3_error) jpayne@68: } jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "add_hts_options") < 0)) __PYX_ERR(0, 575, __pyx_L3_error) jpayne@68: } jpayne@68: } else { jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; 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A region can\n either be specified by :term:`contig`, `start` and\n `stop`. `start` and `stop` denote 0-based, half-open\n intervals. :term:`reference` and `end` are also accepted for\n backward compatibility as synonyms for :term:`contig` and\n `stop`, respectively.\n\n Alternatively, a samtools :term:`region` string can be\n supplied.\n\n If any of the coordinates are missing they will be replaced by\n the minimum (`start`) or maximum (`stop`) coordinate.\n\n Note that region strings are 1-based inclusive, while `start`\n and `stop` denote an interval in 0-based, half-open\n coordinates (like BED files and Python slices).\n\n If `contig` or `region` or are ``*``, unmapped reads at the end\n of a BAM file will be returned. Setting either to ``.`` will\n iterate from the beginning of the file.\n\n Returns\n -------\n\n tuple :\n a tuple of `flag`, :term:`tid`, `start` and\n `stop`. The flag indicates whether no coordinates were\n supplied and the genomic region is the complete genomic space.\n\n Raises\n ------\n\n ValueError\n for invalid or out of bounds regions.\n\n "); jpayne@68: static PyMethodDef __pyx_mdef_5pysam_10libchtslib_7HTSFile_23parse_region = {"parse_region", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_23parse_region, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_22parse_region}; jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_7HTSFile_23parse_region(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: PyObject *__pyx_v_contig = 0; jpayne@68: PyObject *__pyx_v_start = 0; jpayne@68: PyObject *__pyx_v_stop = 0; jpayne@68: PyObject *__pyx_v_region = 0; jpayne@68: PyObject *__pyx_v_tid = 0; jpayne@68: PyObject *__pyx_v_reference = 0; jpayne@68: PyObject *__pyx_v_end = 0; jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[7] = {0,0,0,0,0,0,0}; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("parse_region (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_contig,&__pyx_n_s_start,&__pyx_n_s_stop,&__pyx_n_s_region,&__pyx_n_s_tid,&__pyx_n_s_reference,&__pyx_n_s_end,0}; jpayne@68: values[0] = __Pyx_Arg_NewRef_FASTCALL(((PyObject *)Py_None)); jpayne@68: values[1] = __Pyx_Arg_NewRef_FASTCALL(((PyObject *)Py_None)); jpayne@68: values[2] = __Pyx_Arg_NewRef_FASTCALL(((PyObject *)Py_None)); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":596 jpayne@68: * jpayne@68: * def parse_region(self, contig=None, start=None, stop=None, jpayne@68: * region=None, tid=None, # <<<<<<<<<<<<<< jpayne@68: * reference=None, end=None): jpayne@68: * """parse alternative ways to specify a genomic region. 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A region can jpayne@68: * either be specified by :term:`contig`, `start` and jpayne@68: */ jpayne@68: values[5] = __Pyx_Arg_NewRef_FASTCALL(((PyObject *)Py_None)); jpayne@68: values[6] = __Pyx_Arg_NewRef_FASTCALL(((PyObject *)Py_None)); jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 7: values[6] = __Pyx_Arg_FASTCALL(__pyx_args, 6); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 6: values[5] = __Pyx_Arg_FASTCALL(__pyx_args, 5); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 5: values[4] = __Pyx_Arg_FASTCALL(__pyx_args, 4); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 4: values[3] = __Pyx_Arg_FASTCALL(__pyx_args, 3); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 3: values[2] = __Pyx_Arg_FASTCALL(__pyx_args, 2); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 2: values[1] = __Pyx_Arg_FASTCALL(__pyx_args, 1); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (kw_args > 0) { jpayne@68: PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_contig); jpayne@68: if (value) { values[0] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 595, __pyx_L3_error) jpayne@68: } jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 1: jpayne@68: if (kw_args > 0) { jpayne@68: PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_start); jpayne@68: if (value) { values[1] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 595, __pyx_L3_error) jpayne@68: } jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 2: jpayne@68: if (kw_args > 0) { jpayne@68: PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_stop); jpayne@68: if (value) { values[2] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 595, __pyx_L3_error) jpayne@68: } jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 3: jpayne@68: if (kw_args > 0) { jpayne@68: PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_region); jpayne@68: if (value) { values[3] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 595, __pyx_L3_error) jpayne@68: } jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 4: jpayne@68: if (kw_args > 0) { jpayne@68: PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_tid); jpayne@68: if (value) { values[4] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 595, __pyx_L3_error) jpayne@68: } jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 5: jpayne@68: if (kw_args > 0) { jpayne@68: PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_reference); jpayne@68: if (value) { values[5] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 595, __pyx_L3_error) jpayne@68: } jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 6: jpayne@68: if (kw_args > 0) { jpayne@68: PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_end); jpayne@68: if (value) { values[6] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 595, __pyx_L3_error) jpayne@68: } jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "parse_region") < 0)) __PYX_ERR(0, 595, __pyx_L3_error) jpayne@68: } jpayne@68: } else { jpayne@68: switch (__pyx_nargs) { jpayne@68: case 7: values[6] = __Pyx_Arg_FASTCALL(__pyx_args, 6); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 6: values[5] = __Pyx_Arg_FASTCALL(__pyx_args, 5); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 5: values[4] = __Pyx_Arg_FASTCALL(__pyx_args, 4); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 4: values[3] = __Pyx_Arg_FASTCALL(__pyx_args, 3); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 3: values[2] = __Pyx_Arg_FASTCALL(__pyx_args, 2); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 2: values[1] = __Pyx_Arg_FASTCALL(__pyx_args, 1); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: } jpayne@68: __pyx_v_contig = values[0]; jpayne@68: __pyx_v_start = values[1]; jpayne@68: __pyx_v_stop = values[2]; jpayne@68: __pyx_v_region = values[3]; jpayne@68: __pyx_v_tid = values[4]; jpayne@68: __pyx_v_reference = values[5]; jpayne@68: __pyx_v_end = values[6]; jpayne@68: } jpayne@68: goto __pyx_L6_skip; jpayne@68: __pyx_L5_argtuple_error:; jpayne@68: __Pyx_RaiseArgtupleInvalid("parse_region", 0, 0, 7, __pyx_nargs); __PYX_ERR(0, 595, __pyx_L3_error) jpayne@68: __pyx_L6_skip:; jpayne@68: goto __pyx_L4_argument_unpacking_done; jpayne@68: __pyx_L3_error:; jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_AddTraceback("pysam.libchtslib.HTSFile.parse_region", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return NULL; jpayne@68: __pyx_L4_argument_unpacking_done:; jpayne@68: __pyx_r = __pyx_pf_5pysam_10libchtslib_7HTSFile_22parse_region(((struct __pyx_obj_5pysam_10libchtslib_HTSFile *)__pyx_v_self), __pyx_v_contig, __pyx_v_start, __pyx_v_stop, __pyx_v_region, __pyx_v_tid, __pyx_v_reference, __pyx_v_end); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":595 jpayne@68: * hts_opt_free(opts) jpayne@68: * jpayne@68: * def parse_region(self, contig=None, start=None, stop=None, # <<<<<<<<<<<<<< jpayne@68: * region=None, tid=None, jpayne@68: * reference=None, end=None): jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_22parse_region(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, PyObject *__pyx_v_contig, PyObject *__pyx_v_start, PyObject *__pyx_v_stop, PyObject *__pyx_v_region, PyObject *__pyx_v_tid, PyObject *__pyx_v_reference, PyObject *__pyx_v_end) { jpayne@68: int __pyx_v_rtid; jpayne@68: int32_t __pyx_v_rstart; jpayne@68: int32_t __pyx_v_rstop; jpayne@68: PyObject *__pyx_v_coord = NULL; jpayne@68: PyObject *__pyx_v_parts = NULL; jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_TraceDeclarations jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_t_1; jpayne@68: PyObject *__pyx_t_2 = NULL; jpayne@68: int __pyx_t_3; jpayne@68: PyObject *__pyx_t_4 = NULL; jpayne@68: PyObject *__pyx_t_5 = NULL; jpayne@68: PyObject *__pyx_t_6 = NULL; jpayne@68: PyObject *__pyx_t_7 = NULL; jpayne@68: int32_t __pyx_t_8; jpayne@68: int __pyx_t_9; jpayne@68: PyObject *__pyx_t_10 = NULL; jpayne@68: PyObject *__pyx_t_11 = NULL; jpayne@68: PyObject *__pyx_t_12 = NULL; jpayne@68: unsigned int __pyx_t_13; jpayne@68: PyObject *(*__pyx_t_14)(PyObject *); jpayne@68: Py_ssize_t __pyx_t_15; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_TraceFrameInit(__pyx_codeobj__52) jpayne@68: __Pyx_RefNannySetupContext("parse_region", 0); jpayne@68: __Pyx_TraceCall("parse_region", __pyx_f[0], 595, 0, __PYX_ERR(0, 595, __pyx_L1_error)); jpayne@68: __Pyx_INCREF(__pyx_v_contig); jpayne@68: __Pyx_INCREF(__pyx_v_stop); jpayne@68: __Pyx_INCREF(__pyx_v_region); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":638 jpayne@68: * cdef int32_t rstop jpayne@68: * jpayne@68: * if reference is not None: # <<<<<<<<<<<<<< jpayne@68: * if contig is not None: jpayne@68: * raise ValueError('contig and reference should not both be specified') jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_reference != Py_None); jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":639 jpayne@68: * jpayne@68: * if reference is not None: jpayne@68: * if contig is not None: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError('contig and reference should not both be specified') jpayne@68: * contig = reference jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_contig != Py_None); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":640 jpayne@68: * if reference is not None: jpayne@68: * if contig is not None: jpayne@68: * raise ValueError('contig and reference should not both be specified') # <<<<<<<<<<<<<< jpayne@68: * contig = reference jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__53, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 640, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 640, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":639 jpayne@68: * jpayne@68: * if reference is not None: jpayne@68: * if contig is not None: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError('contig and reference should not both be specified') jpayne@68: * contig = reference jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":641 jpayne@68: * if contig is not None: jpayne@68: * raise ValueError('contig and reference should not both be specified') jpayne@68: * contig = reference # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if end is not None: jpayne@68: */ jpayne@68: __Pyx_INCREF(__pyx_v_reference); jpayne@68: __Pyx_DECREF_SET(__pyx_v_contig, __pyx_v_reference); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":638 jpayne@68: * cdef int32_t rstop jpayne@68: * jpayne@68: * if reference is not None: # <<<<<<<<<<<<<< jpayne@68: * if contig is not None: jpayne@68: * raise ValueError('contig and reference should not both be specified') jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":643 jpayne@68: * contig = reference jpayne@68: * jpayne@68: * if end is not None: # <<<<<<<<<<<<<< jpayne@68: * if stop is not None: jpayne@68: * raise ValueError('stop and end should not both be specified') jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_end != Py_None); jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":644 jpayne@68: * jpayne@68: * if end is not None: jpayne@68: * if stop is not None: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError('stop and end should not both be specified') jpayne@68: * stop = end jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_stop != Py_None); jpayne@68: if (unlikely(__pyx_t_1)) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":645 jpayne@68: * if end is not None: jpayne@68: * if stop is not None: jpayne@68: * raise ValueError('stop and end should not both be specified') # <<<<<<<<<<<<<< jpayne@68: * stop = end jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__54, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 645, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __Pyx_Raise(__pyx_t_2, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __PYX_ERR(0, 645, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":644 jpayne@68: * jpayne@68: * if end is not None: jpayne@68: * if stop is not None: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError('stop and end should not both be specified') jpayne@68: * stop = end jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":646 jpayne@68: * if stop is not None: jpayne@68: * raise ValueError('stop and end should not both be specified') jpayne@68: * stop = end # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if contig is None and tid is None and region is None: jpayne@68: */ jpayne@68: __Pyx_INCREF(__pyx_v_end); jpayne@68: __Pyx_DECREF_SET(__pyx_v_stop, __pyx_v_end); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":643 jpayne@68: * contig = reference jpayne@68: * jpayne@68: * if end is not None: # <<<<<<<<<<<<<< jpayne@68: * if stop is not None: jpayne@68: * raise ValueError('stop and end should not both be specified') jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":648 jpayne@68: * stop = end jpayne@68: * jpayne@68: * if contig is None and tid is None and region is None: # <<<<<<<<<<<<<< jpayne@68: * return 0, 0, 0, MAX_POS jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_3 = (__pyx_v_contig == Py_None); jpayne@68: if (__pyx_t_3) { jpayne@68: } else { jpayne@68: __pyx_t_1 = __pyx_t_3; jpayne@68: goto __pyx_L8_bool_binop_done; jpayne@68: } jpayne@68: __pyx_t_3 = (__pyx_v_tid == Py_None); jpayne@68: if (__pyx_t_3) { jpayne@68: } else { jpayne@68: __pyx_t_1 = __pyx_t_3; jpayne@68: goto __pyx_L8_bool_binop_done; jpayne@68: } jpayne@68: __pyx_t_3 = (__pyx_v_region == Py_None); jpayne@68: __pyx_t_1 = __pyx_t_3; jpayne@68: __pyx_L8_bool_binop_done:; jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":649 jpayne@68: * jpayne@68: * if contig is None and tid is None and region is None: jpayne@68: * return 0, 0, 0, MAX_POS # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * rtid = -1 jpayne@68: */ jpayne@68: __Pyx_XDECREF(__pyx_r); jpayne@68: __pyx_t_2 = __Pyx_PyInt_From_int(__pyx_v_5pysam_10libchtslib_MAX_POS); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 649, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_2); jpayne@68: __pyx_t_4 = PyTuple_New(4); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 649, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_4); jpayne@68: __Pyx_INCREF(__pyx_int_0); jpayne@68: __Pyx_GIVEREF(__pyx_int_0); jpayne@68: if (__Pyx_PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_int_0)) __PYX_ERR(0, 649, __pyx_L1_error); jpayne@68: __Pyx_INCREF(__pyx_int_0); jpayne@68: __Pyx_GIVEREF(__pyx_int_0); jpayne@68: if (__Pyx_PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_int_0)) __PYX_ERR(0, 649, __pyx_L1_error); jpayne@68: __Pyx_INCREF(__pyx_int_0); jpayne@68: __Pyx_GIVEREF(__pyx_int_0); jpayne@68: if (__Pyx_PyTuple_SET_ITEM(__pyx_t_4, 2, __pyx_int_0)) __PYX_ERR(0, 649, __pyx_L1_error); jpayne@68: __Pyx_GIVEREF(__pyx_t_2); jpayne@68: if (__Pyx_PyTuple_SET_ITEM(__pyx_t_4, 3, __pyx_t_2)) __PYX_ERR(0, 649, __pyx_L1_error); jpayne@68: __pyx_t_2 = 0; jpayne@68: __pyx_r = __pyx_t_4; jpayne@68: __pyx_t_4 = 0; jpayne@68: goto __pyx_L0; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":648 jpayne@68: * stop = end jpayne@68: * jpayne@68: * if contig is None and tid is None and region is None: # <<<<<<<<<<<<<< jpayne@68: * return 0, 0, 0, MAX_POS jpayne@68: * jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":651 jpayne@68: * return 0, 0, 0, MAX_POS jpayne@68: * jpayne@68: * rtid = -1 # <<<<<<<<<<<<<< jpayne@68: * rstart = 0 jpayne@68: * rstop = MAX_POS jpayne@68: */ jpayne@68: __pyx_v_rtid = -1; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":652 jpayne@68: * jpayne@68: * rtid = -1 jpayne@68: * rstart = 0 # <<<<<<<<<<<<<< jpayne@68: * rstop = MAX_POS jpayne@68: * if start is not None: jpayne@68: */ jpayne@68: __pyx_v_rstart = 0; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":653 jpayne@68: * rtid = -1 jpayne@68: * rstart = 0 jpayne@68: * rstop = MAX_POS # <<<<<<<<<<<<<< jpayne@68: * if start is not None: jpayne@68: * try: jpayne@68: */ jpayne@68: __pyx_v_rstop = __pyx_v_5pysam_10libchtslib_MAX_POS; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":654 jpayne@68: * rstart = 0 jpayne@68: * rstop = MAX_POS jpayne@68: * if start is not None: # <<<<<<<<<<<<<< jpayne@68: * try: jpayne@68: * rstart = start jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_start != Py_None); jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":655 jpayne@68: * rstop = MAX_POS jpayne@68: * if start is not None: jpayne@68: * try: # <<<<<<<<<<<<<< jpayne@68: * rstart = start jpayne@68: * except OverflowError: jpayne@68: */ jpayne@68: { jpayne@68: __Pyx_PyThreadState_declare jpayne@68: __Pyx_PyThreadState_assign jpayne@68: __Pyx_ExceptionSave(&__pyx_t_5, &__pyx_t_6, &__pyx_t_7); jpayne@68: __Pyx_XGOTREF(__pyx_t_5); jpayne@68: __Pyx_XGOTREF(__pyx_t_6); jpayne@68: __Pyx_XGOTREF(__pyx_t_7); jpayne@68: /*try:*/ { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":656 jpayne@68: * if start is not None: jpayne@68: * try: jpayne@68: * rstart = start # <<<<<<<<<<<<<< jpayne@68: * except OverflowError: jpayne@68: * raise ValueError('start out of range (%i)' % start) jpayne@68: */ jpayne@68: __pyx_t_8 = __Pyx_PyInt_As_int32_t(__pyx_v_start); if (unlikely((__pyx_t_8 == ((int32_t)-1)) && PyErr_Occurred())) __PYX_ERR(0, 656, __pyx_L12_error) jpayne@68: __pyx_v_rstart = __pyx_t_8; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":655 jpayne@68: * rstop = MAX_POS jpayne@68: * if start is not None: jpayne@68: * try: # <<<<<<<<<<<<<< jpayne@68: * rstart = start jpayne@68: * except OverflowError: jpayne@68: */ jpayne@68: } jpayne@68: __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0; jpayne@68: __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0; jpayne@68: __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0; jpayne@68: goto __pyx_L17_try_end; jpayne@68: __pyx_L12_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":657 jpayne@68: * try: jpayne@68: * rstart = start jpayne@68: * except OverflowError: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError('start out of range (%i)' % start) jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_9 = __Pyx_PyErr_ExceptionMatches(__pyx_builtin_OverflowError); jpayne@68: if (__pyx_t_9) { jpayne@68: __Pyx_AddTraceback("pysam.libchtslib.HTSFile.parse_region", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: if (__Pyx_GetException(&__pyx_t_4, &__pyx_t_2, &__pyx_t_10) < 0) __PYX_ERR(0, 657, __pyx_L14_except_error) jpayne@68: __Pyx_XGOTREF(__pyx_t_4); jpayne@68: __Pyx_XGOTREF(__pyx_t_2); jpayne@68: __Pyx_XGOTREF(__pyx_t_10); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":658 jpayne@68: * rstart = start jpayne@68: * except OverflowError: jpayne@68: * raise ValueError('start out of range (%i)' % start) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if stop is not None: jpayne@68: */ jpayne@68: __pyx_t_11 = __Pyx_PyUnicode_FormatSafe(__pyx_kp_u_start_out_of_range_i, __pyx_v_start); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 658, __pyx_L14_except_error) jpayne@68: __Pyx_GOTREF(__pyx_t_11); jpayne@68: __pyx_t_12 = __Pyx_PyObject_CallOneArg(__pyx_builtin_ValueError, __pyx_t_11); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 658, __pyx_L14_except_error) jpayne@68: __Pyx_GOTREF(__pyx_t_12); jpayne@68: __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0; jpayne@68: __Pyx_Raise(__pyx_t_12, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0; jpayne@68: __PYX_ERR(0, 658, __pyx_L14_except_error) jpayne@68: } jpayne@68: goto __pyx_L14_except_error; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":655 jpayne@68: * rstop = MAX_POS jpayne@68: * if start is not None: jpayne@68: * try: # <<<<<<<<<<<<<< jpayne@68: * rstart = start jpayne@68: * except OverflowError: jpayne@68: */ jpayne@68: __pyx_L14_except_error:; jpayne@68: __Pyx_XGIVEREF(__pyx_t_5); jpayne@68: __Pyx_XGIVEREF(__pyx_t_6); jpayne@68: __Pyx_XGIVEREF(__pyx_t_7); jpayne@68: __Pyx_ExceptionReset(__pyx_t_5, __pyx_t_6, __pyx_t_7); jpayne@68: goto __pyx_L1_error; jpayne@68: __pyx_L17_try_end:; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":654 jpayne@68: * rstart = 0 jpayne@68: * rstop = MAX_POS jpayne@68: * if start is not None: # <<<<<<<<<<<<<< jpayne@68: * try: jpayne@68: * rstart = start jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":660 jpayne@68: * raise ValueError('start out of range (%i)' % start) jpayne@68: * jpayne@68: * if stop is not None: # <<<<<<<<<<<<<< jpayne@68: * try: jpayne@68: * rstop = stop jpayne@68: */ jpayne@68: __pyx_t_1 = (__pyx_v_stop != Py_None); jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":661 jpayne@68: * jpayne@68: * if stop is not None: jpayne@68: * try: # <<<<<<<<<<<<<< jpayne@68: * rstop = stop jpayne@68: * except OverflowError: jpayne@68: */ jpayne@68: { jpayne@68: __Pyx_PyThreadState_declare jpayne@68: __Pyx_PyThreadState_assign jpayne@68: __Pyx_ExceptionSave(&__pyx_t_7, &__pyx_t_6, &__pyx_t_5); jpayne@68: __Pyx_XGOTREF(__pyx_t_7); jpayne@68: __Pyx_XGOTREF(__pyx_t_6); jpayne@68: __Pyx_XGOTREF(__pyx_t_5); jpayne@68: /*try:*/ { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":662 jpayne@68: * if stop is not None: jpayne@68: * try: jpayne@68: * rstop = stop # <<<<<<<<<<<<<< jpayne@68: * except OverflowError: jpayne@68: * raise ValueError('stop out of range (%i)' % stop) jpayne@68: */ jpayne@68: __pyx_t_8 = __Pyx_PyInt_As_int32_t(__pyx_v_stop); if (unlikely((__pyx_t_8 == ((int32_t)-1)) && PyErr_Occurred())) __PYX_ERR(0, 662, __pyx_L21_error) jpayne@68: __pyx_v_rstop = __pyx_t_8; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":661 jpayne@68: * jpayne@68: * if stop is not None: jpayne@68: * try: # <<<<<<<<<<<<<< jpayne@68: * rstop = stop jpayne@68: * except OverflowError: jpayne@68: */ jpayne@68: } jpayne@68: __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0; jpayne@68: __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0; jpayne@68: __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0; jpayne@68: goto __pyx_L26_try_end; jpayne@68: __pyx_L21_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_10); __pyx_t_10 = 0; jpayne@68: __Pyx_XDECREF(__pyx_t_11); __pyx_t_11 = 0; jpayne@68: __Pyx_XDECREF(__pyx_t_12); __pyx_t_12 = 0; jpayne@68: __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0; jpayne@68: __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":663 jpayne@68: * try: jpayne@68: * rstop = stop jpayne@68: * except OverflowError: # <<<<<<<<<<<<<< jpayne@68: * raise ValueError('stop out of range (%i)' % stop) jpayne@68: * jpayne@68: */ jpayne@68: __pyx_t_9 = __Pyx_PyErr_ExceptionMatches(__pyx_builtin_OverflowError); jpayne@68: if (__pyx_t_9) { jpayne@68: __Pyx_AddTraceback("pysam.libchtslib.HTSFile.parse_region", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: if (__Pyx_GetException(&__pyx_t_10, &__pyx_t_2, &__pyx_t_4) < 0) __PYX_ERR(0, 663, __pyx_L23_except_error) jpayne@68: __Pyx_XGOTREF(__pyx_t_10); jpayne@68: __Pyx_XGOTREF(__pyx_t_2); jpayne@68: __Pyx_XGOTREF(__pyx_t_4); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":664 jpayne@68: * rstop = stop jpayne@68: * except OverflowError: jpayne@68: * raise ValueError('stop out of range (%i)' % stop) # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * if region: jpayne@68: */ jpayne@68: __pyx_t_12 = __Pyx_PyUnicode_FormatSafe(__pyx_kp_u_stop_out_of_range_i, __pyx_v_stop); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 664, __pyx_L23_except_error) jpayne@68: __Pyx_GOTREF(__pyx_t_12); jpayne@68: __pyx_t_11 = __Pyx_PyObject_CallOneArg(__pyx_builtin_ValueError, __pyx_t_12); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 664, __pyx_L23_except_error) jpayne@68: __Pyx_GOTREF(__pyx_t_11); jpayne@68: __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0; jpayne@68: __Pyx_Raise(__pyx_t_11, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0; jpayne@68: __PYX_ERR(0, 664, __pyx_L23_except_error) jpayne@68: } jpayne@68: goto __pyx_L23_except_error; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":661 jpayne@68: * jpayne@68: * if stop is not None: jpayne@68: * try: # <<<<<<<<<<<<<< jpayne@68: * rstop = stop jpayne@68: * except OverflowError: jpayne@68: */ jpayne@68: __pyx_L23_except_error:; jpayne@68: __Pyx_XGIVEREF(__pyx_t_7); jpayne@68: __Pyx_XGIVEREF(__pyx_t_6); jpayne@68: __Pyx_XGIVEREF(__pyx_t_5); jpayne@68: __Pyx_ExceptionReset(__pyx_t_7, __pyx_t_6, __pyx_t_5); jpayne@68: goto __pyx_L1_error; jpayne@68: __pyx_L26_try_end:; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":660 jpayne@68: * raise ValueError('start out of range (%i)' % start) jpayne@68: * jpayne@68: * if stop is not None: # <<<<<<<<<<<<<< jpayne@68: * try: jpayne@68: * rstop = stop jpayne@68: */ jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":666 jpayne@68: * raise ValueError('stop out of range (%i)' % stop) jpayne@68: * jpayne@68: * if region: # <<<<<<<<<<<<<< jpayne@68: * region = force_str(region) jpayne@68: * if ":" in region: jpayne@68: */ jpayne@68: __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_v_region); if (unlikely((__pyx_t_1 < 0))) __PYX_ERR(0, 666, __pyx_L1_error) jpayne@68: if (__pyx_t_1) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":667 jpayne@68: * jpayne@68: * if region: jpayne@68: * region = force_str(region) # <<<<<<<<<<<<<< jpayne@68: * if ":" in region: jpayne@68: * contig, coord = region.split(":") jpayne@68: */ jpayne@68: __pyx_t_4 = __pyx_f_5pysam_9libcutils_force_str(__pyx_v_region, NULL); 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jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":682 jpayne@68: * rtid = tid jpayne@68: * else: jpayne@68: * if contig == "*": # <<<<<<<<<<<<<< jpayne@68: * rtid = HTS_IDX_NOCOOR jpayne@68: * elif contig == ".": jpayne@68: */ jpayne@68: /*else*/ { jpayne@68: __pyx_t_3 = (__Pyx_PyUnicode_Equals(__pyx_v_contig, __pyx_kp_u__58, Py_EQ)); if (unlikely((__pyx_t_3 < 0))) __PYX_ERR(0, 682, __pyx_L1_error) jpayne@68: if (__pyx_t_3) { jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":683 jpayne@68: * else: jpayne@68: * if contig == "*": jpayne@68: * rtid = HTS_IDX_NOCOOR # <<<<<<<<<<<<<< jpayne@68: * elif contig == ".": jpayne@68: * rtid = HTS_IDX_START jpayne@68: */ jpayne@68: __pyx_v_rtid = HTS_IDX_NOCOOR; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":682 jpayne@68: * rtid = tid jpayne@68: * else: jpayne@68: * if contig == "*": # <<<<<<<<<<<<<< jpayne@68: * rtid = HTS_IDX_NOCOOR jpayne@68: * elif contig == ".": jpayne@68: */ jpayne@68: goto __pyx_L36; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":684 jpayne@68: * if contig == "*": jpayne@68: * rtid = HTS_IDX_NOCOOR jpayne@68: * elif contig == ".": # <<<<<<<<<<<<<< jpayne@68: * rtid = HTS_IDX_START jpayne@68: * else: jpayne@68: */ jpayne@68: __pyx_t_3 = (__Pyx_PyUnicode_Equals(__pyx_v_contig, __pyx_kp_u__59, Py_EQ)); 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jpayne@68: __Pyx_TraceDeclarations jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: PyObject *__pyx_t_1 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_TraceFrameInit(__pyx_codeobj__60) jpayne@68: __Pyx_RefNannySetupContext("is_valid_tid", 1); jpayne@68: __Pyx_TraceCall("is_valid_tid", __pyx_f[0], 700, 0, __PYX_ERR(0, 700, __pyx_L1_error)); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":706 jpayne@68: * returns -1 if contig is not known. jpayne@68: * """ jpayne@68: * raise NotImplementedError() # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def is_valid_reference_name(self, contig): jpayne@68: */ jpayne@68: __pyx_t_1 = __Pyx_PyObject_CallNoArg(__pyx_builtin_NotImplementedError); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 706, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __Pyx_Raise(__pyx_t_1, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@68: __PYX_ERR(0, 706, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":700 jpayne@68: * return 1, rtid, rstart, rstop jpayne@68: * jpayne@68: * def is_valid_tid(self, tid): # <<<<<<<<<<<<<< jpayne@68: * """ jpayne@68: * return True if the numerical :term:`tid` is valid; False otherwise. jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_1); jpayne@68: __Pyx_AddTraceback("pysam.libchtslib.HTSFile.is_valid_tid", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_TraceReturn(__pyx_r, 0); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":708 jpayne@68: * raise NotImplementedError() jpayne@68: * jpayne@68: * def is_valid_reference_name(self, contig): # <<<<<<<<<<<<<< jpayne@68: * """ jpayne@68: * return True if the contig name :term:`contig` is valid; False otherwise. jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_7HTSFile_27is_valid_reference_name(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: PyDoc_STRVAR(__pyx_doc_5pysam_10libchtslib_7HTSFile_26is_valid_reference_name, "HTSFile.is_valid_reference_name(self, contig)\n\n return True if the contig name :term:`contig` is valid; False otherwise.\n "); jpayne@68: static PyMethodDef __pyx_mdef_5pysam_10libchtslib_7HTSFile_27is_valid_reference_name = {"is_valid_reference_name", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_27is_valid_reference_name, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_26is_valid_reference_name}; jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_7HTSFile_27is_valid_reference_name(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: PyObject *__pyx_v_contig = 0; jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[1] = {0}; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("is_valid_reference_name (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_contig,0}; jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (likely((values[0] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_contig)) != 0)) { jpayne@68: (void)__Pyx_Arg_NewRef_FASTCALL(values[0]); jpayne@68: kw_args--; jpayne@68: } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 708, __pyx_L3_error) jpayne@68: else goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "is_valid_reference_name") < 0)) __PYX_ERR(0, 708, __pyx_L3_error) jpayne@68: } jpayne@68: } else if (unlikely(__pyx_nargs != 1)) { jpayne@68: goto __pyx_L5_argtuple_error; jpayne@68: } else { jpayne@68: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); 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/*proto*/ jpayne@68: PyDoc_STRVAR(__pyx_doc_5pysam_10libchtslib_7HTSFile_28get_tid, "HTSFile.get_tid(self, contig)\n\n return the numerical :term:`tid` corresponding to\n :term:`contig`\n\n returns -1 if contig is not known.\n "); jpayne@68: static PyMethodDef __pyx_mdef_5pysam_10libchtslib_7HTSFile_29get_tid = {"get_tid", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_29get_tid, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_28get_tid}; jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_7HTSFile_29get_tid(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: CYTHON_UNUSED PyObject *__pyx_v_contig = 0; jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[1] = {0}; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("get_tid (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_contig,0}; jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (likely((values[0] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_contig)) != 0)) { jpayne@68: (void)__Pyx_Arg_NewRef_FASTCALL(values[0]); jpayne@68: kw_args--; jpayne@68: } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 714, __pyx_L3_error) jpayne@68: else goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "get_tid") < 0)) __PYX_ERR(0, 714, __pyx_L3_error) jpayne@68: } jpayne@68: } else if (unlikely(__pyx_nargs != 1)) { jpayne@68: goto __pyx_L5_argtuple_error; jpayne@68: } else { jpayne@68: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: } jpayne@68: __pyx_v_contig = values[0]; jpayne@68: } jpayne@68: goto __pyx_L6_skip; jpayne@68: __pyx_L5_argtuple_error:; jpayne@68: __Pyx_RaiseArgtupleInvalid("get_tid", 1, 1, 1, __pyx_nargs); __PYX_ERR(0, 714, __pyx_L3_error) jpayne@68: __pyx_L6_skip:; jpayne@68: goto __pyx_L4_argument_unpacking_done; jpayne@68: __pyx_L3_error:; jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_AddTraceback("pysam.libchtslib.HTSFile.get_tid", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return NULL; jpayne@68: __pyx_L4_argument_unpacking_done:; jpayne@68: __pyx_r = __pyx_pf_5pysam_10libchtslib_7HTSFile_28get_tid(((struct __pyx_obj_5pysam_10libchtslib_HTSFile *)__pyx_v_self), __pyx_v_contig); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_28get_tid(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_contig) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_TraceDeclarations jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: PyObject *__pyx_t_1 = NULL; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_TraceFrameInit(__pyx_codeobj__62) jpayne@68: __Pyx_RefNannySetupContext("get_tid", 1); jpayne@68: __Pyx_TraceCall("get_tid", __pyx_f[0], 714, 0, __PYX_ERR(0, 714, __pyx_L1_error)); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":721 jpayne@68: * returns -1 if contig is not known. jpayne@68: * """ jpayne@68: * raise NotImplementedError() # <<<<<<<<<<<<<< jpayne@68: * jpayne@68: * def get_reference_name(self, tid): jpayne@68: */ jpayne@68: __pyx_t_1 = __Pyx_PyObject_CallNoArg(__pyx_builtin_NotImplementedError); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 721, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_1); jpayne@68: __Pyx_Raise(__pyx_t_1, 0, 0, 0); jpayne@68: __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; jpayne@68: __PYX_ERR(0, 721, __pyx_L1_error) jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":714 jpayne@68: * return self.get_tid(contig) != -1 jpayne@68: * jpayne@68: * def get_tid(self, contig): # <<<<<<<<<<<<<< jpayne@68: * """ jpayne@68: * return the numerical :term:`tid` corresponding to jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_XDECREF(__pyx_t_1); jpayne@68: __Pyx_AddTraceback("pysam.libchtslib.HTSFile.get_tid", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_TraceReturn(__pyx_r, 0); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":723 jpayne@68: * raise NotImplementedError() jpayne@68: * jpayne@68: * def get_reference_name(self, tid): # <<<<<<<<<<<<<< jpayne@68: * """ jpayne@68: * return :term:`contig` name corresponding to numerical :term:`tid` jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_7HTSFile_31get_reference_name(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: PyDoc_STRVAR(__pyx_doc_5pysam_10libchtslib_7HTSFile_30get_reference_name, "HTSFile.get_reference_name(self, tid)\n\n return :term:`contig` name corresponding to numerical :term:`tid`\n "); jpayne@68: static PyMethodDef __pyx_mdef_5pysam_10libchtslib_7HTSFile_31get_reference_name = {"get_reference_name", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_31get_reference_name, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_30get_reference_name}; jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_7HTSFile_31get_reference_name(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: CYTHON_UNUSED PyObject *__pyx_v_tid = 0; jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[1] = {0}; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("get_reference_name (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_tid,0}; jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (likely((values[0] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_tid)) != 0)) { jpayne@68: (void)__Pyx_Arg_NewRef_FASTCALL(values[0]); jpayne@68: kw_args--; jpayne@68: } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 723, __pyx_L3_error) jpayne@68: else goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "get_reference_name") < 0)) __PYX_ERR(0, 723, __pyx_L3_error) jpayne@68: } jpayne@68: } else if (unlikely(__pyx_nargs != 1)) { jpayne@68: goto __pyx_L5_argtuple_error; jpayne@68: } else { jpayne@68: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: } jpayne@68: __pyx_v_tid = values[0]; 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jpayne@68: if (unlikely(__pyx_nargs > 0)) { jpayne@68: __Pyx_RaiseArgtupleInvalid("__reduce_cython__", 1, 0, 0, __pyx_nargs); return NULL;} jpayne@68: if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "__reduce_cython__", 0))) return NULL; jpayne@68: __pyx_r = __pyx_pf_5pysam_10libchtslib_7HTSFile_32__reduce_cython__(((struct __pyx_obj_5pysam_10libchtslib_HTSFile *)__pyx_v_self)); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_32__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_TraceDeclarations jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_TraceFrameInit(__pyx_codeobj__64) jpayne@68: __Pyx_RefNannySetupContext("__reduce_cython__", 1); jpayne@68: __Pyx_TraceCall("__reduce_cython__", __pyx_f[1], 1, 0, __PYX_ERR(1, 1, __pyx_L1_error)); jpayne@68: jpayne@68: /* "(tree fragment)":2 jpayne@68: * def __reduce_cython__(self): jpayne@68: * raise TypeError, "no default __reduce__ due to non-trivial __cinit__" # <<<<<<<<<<<<<< jpayne@68: * def __setstate_cython__(self, __pyx_state): jpayne@68: * raise TypeError, "no default __reduce__ due to non-trivial __cinit__" jpayne@68: */ jpayne@68: __Pyx_Raise(__pyx_builtin_TypeError, __pyx_kp_s_no_default___reduce___due_to_non, 0, 0); jpayne@68: __PYX_ERR(1, 2, __pyx_L1_error) jpayne@68: jpayne@68: /* "(tree fragment)":1 jpayne@68: * def __reduce_cython__(self): # <<<<<<<<<<<<<< jpayne@68: * raise TypeError, "no default __reduce__ due to non-trivial __cinit__" jpayne@68: * def __setstate_cython__(self, __pyx_state): jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_AddTraceback("pysam.libchtslib.HTSFile.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_TraceReturn(__pyx_r, 0); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: /* "(tree fragment)":3 jpayne@68: * def __reduce_cython__(self): jpayne@68: * raise TypeError, "no default __reduce__ due to non-trivial __cinit__" jpayne@68: * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<< jpayne@68: * raise TypeError, "no default __reduce__ due to non-trivial __cinit__" jpayne@68: */ jpayne@68: jpayne@68: /* Python wrapper */ jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_7HTSFile_35__setstate_cython__(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ); /*proto*/ jpayne@68: PyDoc_STRVAR(__pyx_doc_5pysam_10libchtslib_7HTSFile_34__setstate_cython__, "HTSFile.__setstate_cython__(self, __pyx_state)"); jpayne@68: static PyMethodDef __pyx_mdef_5pysam_10libchtslib_7HTSFile_35__setstate_cython__ = {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_35__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_34__setstate_cython__}; jpayne@68: static PyObject *__pyx_pw_5pysam_10libchtslib_7HTSFile_35__setstate_cython__(PyObject *__pyx_v_self, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds jpayne@68: #else jpayne@68: PyObject *__pyx_args, PyObject *__pyx_kwds jpayne@68: #endif jpayne@68: ) { jpayne@68: CYTHON_UNUSED PyObject *__pyx_v___pyx_state = 0; jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: CYTHON_UNUSED Py_ssize_t __pyx_nargs; jpayne@68: #endif jpayne@68: CYTHON_UNUSED PyObject *const *__pyx_kwvalues; jpayne@68: PyObject* values[1] = {0}; jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: PyObject *__pyx_r = 0; jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: __Pyx_RefNannySetupContext("__setstate_cython__ (wrapper)", 0); jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); jpayne@68: #else jpayne@68: __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; jpayne@68: #endif jpayne@68: #endif jpayne@68: __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); jpayne@68: { jpayne@68: PyObject **__pyx_pyargnames[] = {&__pyx_n_s_pyx_state,0}; jpayne@68: if (__pyx_kwds) { jpayne@68: Py_ssize_t kw_args; jpayne@68: switch (__pyx_nargs) { jpayne@68: case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 0: break; jpayne@68: default: goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); jpayne@68: switch (__pyx_nargs) { jpayne@68: case 0: jpayne@68: if (likely((values[0] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_pyx_state)) != 0)) { jpayne@68: (void)__Pyx_Arg_NewRef_FASTCALL(values[0]); jpayne@68: kw_args--; jpayne@68: } jpayne@68: else if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 3, __pyx_L3_error) jpayne@68: else goto __pyx_L5_argtuple_error; jpayne@68: } jpayne@68: if (unlikely(kw_args > 0)) { jpayne@68: const Py_ssize_t kwd_pos_args = __pyx_nargs; jpayne@68: if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "__setstate_cython__") < 0)) __PYX_ERR(1, 3, __pyx_L3_error) jpayne@68: } jpayne@68: } else if (unlikely(__pyx_nargs != 1)) { jpayne@68: goto __pyx_L5_argtuple_error; jpayne@68: } else { jpayne@68: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); jpayne@68: } jpayne@68: __pyx_v___pyx_state = values[0]; jpayne@68: } jpayne@68: goto __pyx_L6_skip; jpayne@68: __pyx_L5_argtuple_error:; jpayne@68: __Pyx_RaiseArgtupleInvalid("__setstate_cython__", 1, 1, 1, __pyx_nargs); __PYX_ERR(1, 3, __pyx_L3_error) jpayne@68: __pyx_L6_skip:; jpayne@68: goto __pyx_L4_argument_unpacking_done; jpayne@68: __pyx_L3_error:; jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_AddTraceback("pysam.libchtslib.HTSFile.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return NULL; jpayne@68: __pyx_L4_argument_unpacking_done:; jpayne@68: __pyx_r = __pyx_pf_5pysam_10libchtslib_7HTSFile_34__setstate_cython__(((struct __pyx_obj_5pysam_10libchtslib_HTSFile *)__pyx_v_self), __pyx_v___pyx_state); jpayne@68: jpayne@68: /* function exit code */ jpayne@68: { jpayne@68: Py_ssize_t __pyx_temp; jpayne@68: for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { jpayne@68: __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); jpayne@68: } jpayne@68: } jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_34__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state) { jpayne@68: PyObject *__pyx_r = NULL; jpayne@68: __Pyx_TraceDeclarations jpayne@68: __Pyx_RefNannyDeclarations jpayne@68: int __pyx_lineno = 0; jpayne@68: const char *__pyx_filename = NULL; jpayne@68: int __pyx_clineno = 0; jpayne@68: __Pyx_TraceFrameInit(__pyx_codeobj__65) jpayne@68: __Pyx_RefNannySetupContext("__setstate_cython__", 1); jpayne@68: __Pyx_TraceCall("__setstate_cython__", __pyx_f[1], 3, 0, __PYX_ERR(1, 3, __pyx_L1_error)); jpayne@68: jpayne@68: /* "(tree fragment)":4 jpayne@68: * raise TypeError, "no default __reduce__ due to non-trivial __cinit__" jpayne@68: * def __setstate_cython__(self, __pyx_state): jpayne@68: * raise TypeError, "no default __reduce__ due to non-trivial __cinit__" # <<<<<<<<<<<<<< jpayne@68: */ jpayne@68: __Pyx_Raise(__pyx_builtin_TypeError, __pyx_kp_s_no_default___reduce___due_to_non, 0, 0); jpayne@68: __PYX_ERR(1, 4, __pyx_L1_error) jpayne@68: jpayne@68: /* "(tree fragment)":3 jpayne@68: * def __reduce_cython__(self): jpayne@68: * raise TypeError, "no default __reduce__ due to non-trivial __cinit__" jpayne@68: * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<< jpayne@68: * raise TypeError, "no default __reduce__ due to non-trivial __cinit__" jpayne@68: */ jpayne@68: jpayne@68: /* function exit code */ jpayne@68: __pyx_L1_error:; jpayne@68: __Pyx_AddTraceback("pysam.libchtslib.HTSFile.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename); jpayne@68: __pyx_r = NULL; jpayne@68: __Pyx_XGIVEREF(__pyx_r); jpayne@68: __Pyx_TraceReturn(__pyx_r, 0); jpayne@68: __Pyx_RefNannyFinishContext(); jpayne@68: return __pyx_r; jpayne@68: } jpayne@68: static struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile __pyx_vtable_5pysam_10libchtslib_HTSFile; jpayne@68: jpayne@68: static PyObject *__pyx_tp_new_5pysam_10libchtslib_HTSFile(PyTypeObject *t, PyObject *a, PyObject *k) { jpayne@68: struct __pyx_obj_5pysam_10libchtslib_HTSFile *p; jpayne@68: PyObject *o; jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); jpayne@68: o = alloc_func(t, 0); jpayne@68: #else jpayne@68: if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { jpayne@68: o = (*t->tp_alloc)(t, 0); jpayne@68: } else { jpayne@68: o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); jpayne@68: } jpayne@68: if (unlikely(!o)) return 0; jpayne@68: #endif jpayne@68: p = ((struct __pyx_obj_5pysam_10libchtslib_HTSFile *)o); jpayne@68: p->__pyx_vtab = __pyx_vtabptr_5pysam_10libchtslib_HTSFile; jpayne@68: p->filename = Py_None; Py_INCREF(Py_None); jpayne@68: p->mode = Py_None; Py_INCREF(Py_None); jpayne@68: p->threads = Py_None; Py_INCREF(Py_None); jpayne@68: p->index_filename = Py_None; Py_INCREF(Py_None); jpayne@68: if (unlikely(__pyx_pw_5pysam_10libchtslib_7HTSFile_1__cinit__(o, a, k) < 0)) goto bad; jpayne@68: return o; jpayne@68: bad: jpayne@68: Py_DECREF(o); o = 0; jpayne@68: return NULL; jpayne@68: } jpayne@68: jpayne@68: static void __pyx_tp_dealloc_5pysam_10libchtslib_HTSFile(PyObject *o) { jpayne@68: struct __pyx_obj_5pysam_10libchtslib_HTSFile *p = (struct __pyx_obj_5pysam_10libchtslib_HTSFile *)o; jpayne@68: #if CYTHON_USE_TP_FINALIZE jpayne@68: if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { jpayne@68: if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_10libchtslib_HTSFile) { jpayne@68: if (PyObject_CallFinalizerFromDealloc(o)) return; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: PyObject_GC_UnTrack(o); jpayne@68: { jpayne@68: PyObject *etype, *eval, *etb; jpayne@68: PyErr_Fetch(&etype, &eval, &etb); jpayne@68: __Pyx_SET_REFCNT(o, Py_REFCNT(o) + 1); jpayne@68: __pyx_pw_5pysam_10libchtslib_7HTSFile_5__dealloc__(o); jpayne@68: __Pyx_SET_REFCNT(o, Py_REFCNT(o) - 1); jpayne@68: PyErr_Restore(etype, eval, etb); jpayne@68: } jpayne@68: Py_CLEAR(p->filename); jpayne@68: Py_CLEAR(p->mode); jpayne@68: Py_CLEAR(p->threads); jpayne@68: Py_CLEAR(p->index_filename); jpayne@68: #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY jpayne@68: (*Py_TYPE(o)->tp_free)(o); jpayne@68: #else jpayne@68: { jpayne@68: freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); jpayne@68: if (tp_free) tp_free(o); jpayne@68: } jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: static int __pyx_tp_traverse_5pysam_10libchtslib_HTSFile(PyObject *o, visitproc v, void *a) { jpayne@68: int e; jpayne@68: struct __pyx_obj_5pysam_10libchtslib_HTSFile *p = (struct __pyx_obj_5pysam_10libchtslib_HTSFile *)o; jpayne@68: if (p->filename) { jpayne@68: e = (*v)(p->filename, a); if (e) return e; jpayne@68: } jpayne@68: if (p->mode) { jpayne@68: e = (*v)(p->mode, a); if (e) return e; jpayne@68: } jpayne@68: if (p->threads) { jpayne@68: e = (*v)(p->threads, a); if (e) return e; jpayne@68: } jpayne@68: if (p->index_filename) { jpayne@68: e = (*v)(p->index_filename, a); if (e) return e; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: jpayne@68: static int __pyx_tp_clear_5pysam_10libchtslib_HTSFile(PyObject *o) { jpayne@68: PyObject* tmp; jpayne@68: struct __pyx_obj_5pysam_10libchtslib_HTSFile *p = (struct __pyx_obj_5pysam_10libchtslib_HTSFile *)o; jpayne@68: tmp = ((PyObject*)p->filename); jpayne@68: p->filename = Py_None; Py_INCREF(Py_None); jpayne@68: Py_XDECREF(tmp); jpayne@68: tmp = ((PyObject*)p->mode); jpayne@68: p->mode = Py_None; Py_INCREF(Py_None); jpayne@68: Py_XDECREF(tmp); jpayne@68: tmp = ((PyObject*)p->threads); jpayne@68: p->threads = Py_None; Py_INCREF(Py_None); jpayne@68: Py_XDECREF(tmp); jpayne@68: tmp = ((PyObject*)p->index_filename); jpayne@68: p->index_filename = Py_None; Py_INCREF(Py_None); jpayne@68: Py_XDECREF(tmp); jpayne@68: return 0; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_category(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_8category_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_format(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_6format_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_version(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_7version_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_compression(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_11compression_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_description(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_11description_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_open(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_7is_open_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_closed(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_9is_closed_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_closed(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_6closed_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_write(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_8is_write_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_read(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_7is_read_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_sam(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_6is_sam_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_bam(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_6is_bam_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_cram(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_7is_cram_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_vcf(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_6is_vcf_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_bcf(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_6is_bcf_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_filename(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_8filename_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_mode(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_4mode_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_threads(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_7threads_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_index_filename(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_14index_filename_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_stream(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_9is_stream_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_remote(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_9is_remote_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_duplicate_filehandle(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_7HTSFile_20duplicate_filehandle_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyMethodDef __pyx_methods_5pysam_10libchtslib_HTSFile[] = { jpayne@68: {"close", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_3close, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_2close}, jpayne@68: {"flush", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_7flush, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_6flush}, jpayne@68: {"check_truncation", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_9check_truncation, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_8check_truncation}, jpayne@68: {"__enter__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_11__enter__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_10__enter__}, jpayne@68: {"__exit__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_13__exit__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_12__exit__}, jpayne@68: {"reset", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_15reset, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_14reset}, jpayne@68: {"seek", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_17seek, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_16seek}, jpayne@68: {"tell", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_19tell, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_18tell}, jpayne@68: {"add_hts_options", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_21add_hts_options, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_20add_hts_options}, jpayne@68: {"parse_region", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_23parse_region, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_22parse_region}, jpayne@68: {"is_valid_tid", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_25is_valid_tid, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_24is_valid_tid}, jpayne@68: {"is_valid_reference_name", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_27is_valid_reference_name, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_26is_valid_reference_name}, jpayne@68: {"get_tid", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_29get_tid, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_28get_tid}, jpayne@68: {"get_reference_name", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_31get_reference_name, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_30get_reference_name}, jpayne@68: {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_33__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_32__reduce_cython__}, jpayne@68: {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_35__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_34__setstate_cython__}, jpayne@68: {0, 0, 0, 0} jpayne@68: }; jpayne@68: jpayne@68: static struct PyGetSetDef __pyx_getsets_5pysam_10libchtslib_HTSFile[] = { jpayne@68: {(char *)"category", __pyx_getprop_5pysam_10libchtslib_7HTSFile_category, 0, (char *)PyDoc_STR("General file format category. One of UNKNOWN, ALIGNMENTS,\n VARIANTS, INDEX, REGIONS"), 0}, jpayne@68: {(char *)"format", __pyx_getprop_5pysam_10libchtslib_7HTSFile_format, 0, (char *)PyDoc_STR("File format.\n\n One of UNKNOWN, BINARY_FORMAT, TEXT_FORMAT, SAM, BAM,\n BAI, CRAM, CRAI, VCF, BCF, CSI, GZI, TBI, BED.\n "), 0}, jpayne@68: {(char *)"version", __pyx_getprop_5pysam_10libchtslib_7HTSFile_version, 0, (char *)PyDoc_STR("Tuple of file format version numbers (major, minor)"), 0}, jpayne@68: {(char *)"compression", __pyx_getprop_5pysam_10libchtslib_7HTSFile_compression, 0, (char *)PyDoc_STR("File compression.\n\n One of NONE, GZIP, BGZF, CUSTOM."), 0}, jpayne@68: {(char *)"description", __pyx_getprop_5pysam_10libchtslib_7HTSFile_description, 0, (char *)PyDoc_STR("Vaguely human readable description of the file format"), 0}, jpayne@68: {(char *)"is_open", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_open, 0, (char *)PyDoc_STR("return True if HTSFile is open and in a valid state."), 0}, jpayne@68: {(char *)"is_closed", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_closed, 0, (char *)PyDoc_STR("return True if HTSFile is closed."), 0}, jpayne@68: {(char *)"closed", __pyx_getprop_5pysam_10libchtslib_7HTSFile_closed, 0, (char *)PyDoc_STR("return True if HTSFile is closed."), 0}, jpayne@68: {(char *)"is_write", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_write, 0, (char *)PyDoc_STR("return True if HTSFile is open for writing"), 0}, jpayne@68: {(char *)"is_read", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_read, 0, (char *)PyDoc_STR("return True if HTSFile is open for reading"), 0}, jpayne@68: {(char *)"is_sam", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_sam, 0, (char *)PyDoc_STR("return True if HTSFile is reading or writing a SAM alignment file"), 0}, jpayne@68: {(char *)"is_bam", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_bam, 0, (char *)PyDoc_STR("return True if HTSFile is reading or writing a BAM alignment file"), 0}, jpayne@68: {(char *)"is_cram", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_cram, 0, (char *)PyDoc_STR("return True if HTSFile is reading or writing a BAM alignment file"), 0}, jpayne@68: {(char *)"is_vcf", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_vcf, 0, (char *)PyDoc_STR("return True if HTSFile is reading or writing a VCF variant file"), 0}, jpayne@68: {(char *)"is_bcf", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_bcf, 0, (char *)PyDoc_STR("return True if HTSFile is reading or writing a BCF variant file"), 0}, jpayne@68: {(char *)"filename", __pyx_getprop_5pysam_10libchtslib_7HTSFile_filename, 0, (char *)0, 0}, jpayne@68: {(char *)"mode", __pyx_getprop_5pysam_10libchtslib_7HTSFile_mode, 0, (char *)0, 0}, jpayne@68: {(char *)"threads", __pyx_getprop_5pysam_10libchtslib_7HTSFile_threads, 0, (char *)0, 0}, jpayne@68: {(char *)"index_filename", __pyx_getprop_5pysam_10libchtslib_7HTSFile_index_filename, 0, (char *)0, 0}, jpayne@68: {(char *)"is_stream", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_stream, 0, (char *)0, 0}, jpayne@68: {(char *)"is_remote", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_remote, 0, (char *)0, 0}, jpayne@68: {(char *)"duplicate_filehandle", __pyx_getprop_5pysam_10libchtslib_7HTSFile_duplicate_filehandle, 0, (char *)0, 0}, jpayne@68: {0, 0, 0, 0, 0} jpayne@68: }; jpayne@68: #if CYTHON_USE_TYPE_SPECS jpayne@68: static PyType_Slot __pyx_type_5pysam_10libchtslib_HTSFile_slots[] = { jpayne@68: {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_10libchtslib_HTSFile}, jpayne@68: {Py_tp_doc, (void *)PyDoc_STR("\n Base class for HTS file types\n ")}, jpayne@68: {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_10libchtslib_HTSFile}, jpayne@68: {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_10libchtslib_HTSFile}, jpayne@68: {Py_tp_methods, (void *)__pyx_methods_5pysam_10libchtslib_HTSFile}, jpayne@68: {Py_tp_getset, (void *)__pyx_getsets_5pysam_10libchtslib_HTSFile}, jpayne@68: {Py_tp_new, (void *)__pyx_tp_new_5pysam_10libchtslib_HTSFile}, jpayne@68: {0, 0}, jpayne@68: }; jpayne@68: static PyType_Spec __pyx_type_5pysam_10libchtslib_HTSFile_spec = { jpayne@68: "pysam.libchtslib.HTSFile", jpayne@68: sizeof(struct __pyx_obj_5pysam_10libchtslib_HTSFile), jpayne@68: 0, jpayne@68: Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, jpayne@68: __pyx_type_5pysam_10libchtslib_HTSFile_slots, jpayne@68: }; jpayne@68: #else jpayne@68: jpayne@68: static PyTypeObject __pyx_type_5pysam_10libchtslib_HTSFile = { jpayne@68: PyVarObject_HEAD_INIT(0, 0) jpayne@68: "pysam.libchtslib.""HTSFile", /*tp_name*/ jpayne@68: sizeof(struct __pyx_obj_5pysam_10libchtslib_HTSFile), /*tp_basicsize*/ jpayne@68: 0, /*tp_itemsize*/ jpayne@68: __pyx_tp_dealloc_5pysam_10libchtslib_HTSFile, /*tp_dealloc*/ jpayne@68: #if PY_VERSION_HEX < 0x030800b4 jpayne@68: 0, /*tp_print*/ jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030800b4 jpayne@68: 0, /*tp_vectorcall_offset*/ jpayne@68: #endif jpayne@68: 0, /*tp_getattr*/ jpayne@68: 0, /*tp_setattr*/ jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: 0, /*tp_compare*/ jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: 0, /*tp_as_async*/ jpayne@68: #endif jpayne@68: 0, /*tp_repr*/ jpayne@68: 0, /*tp_as_number*/ jpayne@68: 0, /*tp_as_sequence*/ jpayne@68: 0, /*tp_as_mapping*/ jpayne@68: 0, /*tp_hash*/ jpayne@68: 0, /*tp_call*/ jpayne@68: 0, /*tp_str*/ jpayne@68: 0, /*tp_getattro*/ jpayne@68: 0, /*tp_setattro*/ jpayne@68: 0, /*tp_as_buffer*/ jpayne@68: Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ jpayne@68: PyDoc_STR("\n Base class for HTS file types\n "), /*tp_doc*/ jpayne@68: __pyx_tp_traverse_5pysam_10libchtslib_HTSFile, /*tp_traverse*/ jpayne@68: __pyx_tp_clear_5pysam_10libchtslib_HTSFile, /*tp_clear*/ jpayne@68: 0, /*tp_richcompare*/ jpayne@68: 0, /*tp_weaklistoffset*/ jpayne@68: 0, /*tp_iter*/ jpayne@68: 0, /*tp_iternext*/ jpayne@68: __pyx_methods_5pysam_10libchtslib_HTSFile, /*tp_methods*/ jpayne@68: 0, /*tp_members*/ jpayne@68: __pyx_getsets_5pysam_10libchtslib_HTSFile, /*tp_getset*/ jpayne@68: 0, /*tp_base*/ jpayne@68: 0, /*tp_dict*/ jpayne@68: 0, /*tp_descr_get*/ jpayne@68: 0, /*tp_descr_set*/ jpayne@68: #if !CYTHON_USE_TYPE_SPECS jpayne@68: 0, /*tp_dictoffset*/ jpayne@68: #endif jpayne@68: 0, /*tp_init*/ jpayne@68: 0, /*tp_alloc*/ jpayne@68: __pyx_tp_new_5pysam_10libchtslib_HTSFile, /*tp_new*/ jpayne@68: 0, /*tp_free*/ jpayne@68: 0, /*tp_is_gc*/ jpayne@68: 0, /*tp_bases*/ jpayne@68: 0, /*tp_mro*/ jpayne@68: 0, /*tp_cache*/ jpayne@68: 0, /*tp_subclasses*/ jpayne@68: 0, /*tp_weaklist*/ jpayne@68: 0, /*tp_del*/ jpayne@68: 0, /*tp_version_tag*/ jpayne@68: #if PY_VERSION_HEX >= 0x030400a1 jpayne@68: #if CYTHON_USE_TP_FINALIZE jpayne@68: 0, /*tp_finalize*/ jpayne@68: #else jpayne@68: NULL, /*tp_finalize*/ jpayne@68: #endif jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) jpayne@68: 0, /*tp_vectorcall*/ jpayne@68: #endif jpayne@68: #if __PYX_NEED_TP_PRINT_SLOT == 1 jpayne@68: 0, /*tp_print*/ jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030C0000 jpayne@68: 0, /*tp_watched*/ jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030d00A4 jpayne@68: 0, /*tp_versions_used*/ jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 jpayne@68: 0, /*tp_pypy_flags*/ jpayne@68: #endif jpayne@68: }; jpayne@68: #endif jpayne@68: static struct __pyx_vtabstruct_5pysam_10libchtslib_HFile __pyx_vtable_5pysam_10libchtslib_HFile; jpayne@68: jpayne@68: static PyObject *__pyx_tp_new_5pysam_10libchtslib_HFile(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { jpayne@68: struct __pyx_obj_5pysam_10libchtslib_HFile *p; jpayne@68: PyObject *o; jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); jpayne@68: o = alloc_func(t, 0); jpayne@68: #else jpayne@68: if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { jpayne@68: o = (*t->tp_alloc)(t, 0); jpayne@68: } else { jpayne@68: o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); jpayne@68: } jpayne@68: if (unlikely(!o)) return 0; jpayne@68: #endif jpayne@68: p = ((struct __pyx_obj_5pysam_10libchtslib_HFile *)o); jpayne@68: p->__pyx_vtab = __pyx_vtabptr_5pysam_10libchtslib_HFile; jpayne@68: p->name = Py_None; Py_INCREF(Py_None); jpayne@68: p->mode = Py_None; Py_INCREF(Py_None); jpayne@68: return o; jpayne@68: } jpayne@68: jpayne@68: static void __pyx_tp_dealloc_5pysam_10libchtslib_HFile(PyObject *o) { jpayne@68: struct __pyx_obj_5pysam_10libchtslib_HFile *p = (struct __pyx_obj_5pysam_10libchtslib_HFile *)o; jpayne@68: #if CYTHON_USE_TP_FINALIZE jpayne@68: if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { jpayne@68: if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_10libchtslib_HFile) { jpayne@68: if (PyObject_CallFinalizerFromDealloc(o)) return; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: PyObject_GC_UnTrack(o); jpayne@68: { jpayne@68: PyObject *etype, *eval, *etb; jpayne@68: PyErr_Fetch(&etype, &eval, &etb); jpayne@68: __Pyx_SET_REFCNT(o, Py_REFCNT(o) + 1); jpayne@68: __pyx_pw_5pysam_10libchtslib_5HFile_3__dealloc__(o); jpayne@68: __Pyx_SET_REFCNT(o, Py_REFCNT(o) - 1); jpayne@68: PyErr_Restore(etype, eval, etb); jpayne@68: } jpayne@68: Py_CLEAR(p->name); jpayne@68: Py_CLEAR(p->mode); jpayne@68: #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY jpayne@68: (*Py_TYPE(o)->tp_free)(o); jpayne@68: #else jpayne@68: { jpayne@68: freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); jpayne@68: if (tp_free) tp_free(o); jpayne@68: } jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: static int __pyx_tp_traverse_5pysam_10libchtslib_HFile(PyObject *o, visitproc v, void *a) { jpayne@68: int e; jpayne@68: struct __pyx_obj_5pysam_10libchtslib_HFile *p = (struct __pyx_obj_5pysam_10libchtslib_HFile *)o; jpayne@68: if (p->name) { jpayne@68: e = (*v)(p->name, a); if (e) return e; jpayne@68: } jpayne@68: if (p->mode) { jpayne@68: e = (*v)(p->mode, a); if (e) return e; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: jpayne@68: static int __pyx_tp_clear_5pysam_10libchtslib_HFile(PyObject *o) { jpayne@68: PyObject* tmp; jpayne@68: struct __pyx_obj_5pysam_10libchtslib_HFile *p = (struct __pyx_obj_5pysam_10libchtslib_HFile *)o; jpayne@68: tmp = ((PyObject*)p->name); jpayne@68: p->name = Py_None; Py_INCREF(Py_None); jpayne@68: Py_XDECREF(tmp); jpayne@68: tmp = ((PyObject*)p->mode); jpayne@68: p->mode = Py_None; Py_INCREF(Py_None); jpayne@68: Py_XDECREF(tmp); jpayne@68: return 0; jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_5HFile_closed(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_5HFile_6closed_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_5HFile_name(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_5HFile_4name_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_getprop_5pysam_10libchtslib_5HFile_mode(PyObject *o, CYTHON_UNUSED void *x) { jpayne@68: return __pyx_pw_5pysam_10libchtslib_5HFile_4mode_1__get__(o); jpayne@68: } jpayne@68: jpayne@68: static PyObject *__pyx_specialmethod___pyx_pw_5pysam_10libchtslib_5HFile_15__next__(PyObject *self, CYTHON_UNUSED PyObject *arg) { jpayne@68: PyObject *res = __pyx_pw_5pysam_10libchtslib_5HFile_15__next__(self); jpayne@68: if (!res && !PyErr_Occurred()) { PyErr_SetNone(PyExc_StopIteration); } jpayne@68: return res; jpayne@68: } jpayne@68: jpayne@68: static PyMethodDef __pyx_methods_5pysam_10libchtslib_HFile[] = { jpayne@68: {"close", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_5close, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_4close}, jpayne@68: {"fileno", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_7fileno, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_6fileno}, jpayne@68: {"__enter__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_9__enter__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_8__enter__}, jpayne@68: {"__exit__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_11__exit__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_10__exit__}, jpayne@68: {"__next__", (PyCFunction)__pyx_specialmethod___pyx_pw_5pysam_10libchtslib_5HFile_15__next__, METH_NOARGS|METH_COEXIST, 0}, jpayne@68: {"flush", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_17flush, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_16flush}, jpayne@68: {"isatty", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_19isatty, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_18isatty}, jpayne@68: {"readable", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_21readable, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_20readable}, jpayne@68: {"read", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_23read, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_22read}, jpayne@68: {"readall", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_25readall, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_24readall}, jpayne@68: {"readinto", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_27readinto, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_26readinto}, jpayne@68: {"readline", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_29readline, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_28readline}, jpayne@68: {"readlines", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_31readlines, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_30readlines}, jpayne@68: {"seek", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_33seek, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_32seek}, jpayne@68: {"tell", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_35tell, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_34tell}, jpayne@68: {"seekable", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_37seekable, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_36seekable}, jpayne@68: {"truncate", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_39truncate, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_38truncate}, jpayne@68: {"writable", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_41writable, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_40writable}, jpayne@68: {"write", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_43write, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_42write}, jpayne@68: {"writelines", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_45writelines, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_44writelines}, jpayne@68: {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_47__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_46__reduce_cython__}, jpayne@68: {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_49__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_48__setstate_cython__}, jpayne@68: {0, 0, 0, 0} jpayne@68: }; jpayne@68: jpayne@68: static struct PyGetSetDef __pyx_getsets_5pysam_10libchtslib_HFile[] = { jpayne@68: {(char *)"closed", __pyx_getprop_5pysam_10libchtslib_5HFile_closed, 0, (char *)0, 0}, jpayne@68: {(char *)"name", __pyx_getprop_5pysam_10libchtslib_5HFile_name, 0, (char *)0, 0}, jpayne@68: {(char *)"mode", __pyx_getprop_5pysam_10libchtslib_5HFile_mode, 0, (char *)0, 0}, jpayne@68: {0, 0, 0, 0, 0} jpayne@68: }; jpayne@68: #if CYTHON_USE_TYPE_SPECS jpayne@68: static PyType_Slot __pyx_type_5pysam_10libchtslib_HFile_slots[] = { jpayne@68: {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_10libchtslib_HFile}, jpayne@68: {Py_tp_doc, (void *)PyDoc_STR("HFile(name, mode=u'r', closefd=True)")}, jpayne@68: {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_10libchtslib_HFile}, jpayne@68: {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_10libchtslib_HFile}, jpayne@68: {Py_tp_iter, (void *)__pyx_pw_5pysam_10libchtslib_5HFile_13__iter__}, jpayne@68: {Py_tp_iternext, (void *)__pyx_pw_5pysam_10libchtslib_5HFile_15__next__}, jpayne@68: {Py_tp_methods, (void *)__pyx_methods_5pysam_10libchtslib_HFile}, jpayne@68: {Py_tp_getset, (void *)__pyx_getsets_5pysam_10libchtslib_HFile}, jpayne@68: {Py_tp_init, (void *)__pyx_pw_5pysam_10libchtslib_5HFile_1__init__}, jpayne@68: {Py_tp_new, (void *)__pyx_tp_new_5pysam_10libchtslib_HFile}, jpayne@68: {0, 0}, jpayne@68: }; jpayne@68: static PyType_Spec __pyx_type_5pysam_10libchtslib_HFile_spec = { jpayne@68: "pysam.libchtslib.HFile", jpayne@68: sizeof(struct __pyx_obj_5pysam_10libchtslib_HFile), jpayne@68: 0, jpayne@68: Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, jpayne@68: __pyx_type_5pysam_10libchtslib_HFile_slots, jpayne@68: }; jpayne@68: #else jpayne@68: jpayne@68: static PyTypeObject __pyx_type_5pysam_10libchtslib_HFile = { jpayne@68: PyVarObject_HEAD_INIT(0, 0) jpayne@68: "pysam.libchtslib.""HFile", /*tp_name*/ jpayne@68: sizeof(struct __pyx_obj_5pysam_10libchtslib_HFile), /*tp_basicsize*/ jpayne@68: 0, /*tp_itemsize*/ jpayne@68: __pyx_tp_dealloc_5pysam_10libchtslib_HFile, /*tp_dealloc*/ jpayne@68: #if PY_VERSION_HEX < 0x030800b4 jpayne@68: 0, /*tp_print*/ jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030800b4 jpayne@68: 0, /*tp_vectorcall_offset*/ jpayne@68: #endif jpayne@68: 0, /*tp_getattr*/ jpayne@68: 0, /*tp_setattr*/ jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: 0, /*tp_compare*/ jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: 0, /*tp_as_async*/ jpayne@68: #endif jpayne@68: 0, /*tp_repr*/ jpayne@68: 0, /*tp_as_number*/ jpayne@68: 0, /*tp_as_sequence*/ jpayne@68: 0, /*tp_as_mapping*/ jpayne@68: 0, /*tp_hash*/ jpayne@68: 0, /*tp_call*/ jpayne@68: 0, /*tp_str*/ jpayne@68: 0, /*tp_getattro*/ jpayne@68: 0, /*tp_setattro*/ jpayne@68: 0, /*tp_as_buffer*/ jpayne@68: Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ jpayne@68: PyDoc_STR("HFile(name, mode=u'r', closefd=True)"), /*tp_doc*/ jpayne@68: __pyx_tp_traverse_5pysam_10libchtslib_HFile, /*tp_traverse*/ jpayne@68: __pyx_tp_clear_5pysam_10libchtslib_HFile, /*tp_clear*/ jpayne@68: 0, /*tp_richcompare*/ jpayne@68: 0, /*tp_weaklistoffset*/ jpayne@68: __pyx_pw_5pysam_10libchtslib_5HFile_13__iter__, /*tp_iter*/ jpayne@68: __pyx_pw_5pysam_10libchtslib_5HFile_15__next__, /*tp_iternext*/ jpayne@68: __pyx_methods_5pysam_10libchtslib_HFile, /*tp_methods*/ jpayne@68: 0, /*tp_members*/ jpayne@68: __pyx_getsets_5pysam_10libchtslib_HFile, /*tp_getset*/ jpayne@68: 0, /*tp_base*/ jpayne@68: 0, /*tp_dict*/ jpayne@68: 0, /*tp_descr_get*/ jpayne@68: 0, /*tp_descr_set*/ jpayne@68: #if !CYTHON_USE_TYPE_SPECS jpayne@68: 0, /*tp_dictoffset*/ jpayne@68: #endif jpayne@68: __pyx_pw_5pysam_10libchtslib_5HFile_1__init__, /*tp_init*/ jpayne@68: 0, /*tp_alloc*/ jpayne@68: __pyx_tp_new_5pysam_10libchtslib_HFile, /*tp_new*/ jpayne@68: 0, /*tp_free*/ jpayne@68: 0, /*tp_is_gc*/ jpayne@68: 0, /*tp_bases*/ jpayne@68: 0, /*tp_mro*/ jpayne@68: 0, /*tp_cache*/ jpayne@68: 0, /*tp_subclasses*/ jpayne@68: 0, /*tp_weaklist*/ jpayne@68: 0, /*tp_del*/ jpayne@68: 0, /*tp_version_tag*/ jpayne@68: #if PY_VERSION_HEX >= 0x030400a1 jpayne@68: #if CYTHON_USE_TP_FINALIZE jpayne@68: 0, /*tp_finalize*/ jpayne@68: #else jpayne@68: NULL, /*tp_finalize*/ jpayne@68: #endif jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) jpayne@68: 0, /*tp_vectorcall*/ jpayne@68: #endif jpayne@68: #if __PYX_NEED_TP_PRINT_SLOT == 1 jpayne@68: 0, /*tp_print*/ jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030C0000 jpayne@68: 0, /*tp_watched*/ jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030d00A4 jpayne@68: 0, /*tp_versions_used*/ jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 jpayne@68: 0, /*tp_pypy_flags*/ jpayne@68: #endif jpayne@68: }; jpayne@68: #endif jpayne@68: jpayne@68: static PyMethodDef __pyx_methods[] = { jpayne@68: {0, 0, 0, 0} jpayne@68: }; jpayne@68: #ifndef CYTHON_SMALL_CODE jpayne@68: #if defined(__clang__) jpayne@68: #define CYTHON_SMALL_CODE jpayne@68: #elif defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 3)) jpayne@68: #define CYTHON_SMALL_CODE __attribute__((cold)) jpayne@68: #else jpayne@68: #define CYTHON_SMALL_CODE jpayne@68: #endif jpayne@68: #endif jpayne@68: /* #### Code section: pystring_table ### */ jpayne@68: jpayne@68: static int __Pyx_CreateStringTabAndInitStrings(void) { jpayne@68: __Pyx_StringTabEntry __pyx_string_tab[] = { jpayne@68: {&__pyx_n_u_ALIGNMENTS, __pyx_k_ALIGNMENTS, sizeof(__pyx_k_ALIGNMENTS), 0, 1, 0, 1}, jpayne@68: {&__pyx_kp_u_An_error_occurred_while_applying, __pyx_k_An_error_occurred_while_applying, sizeof(__pyx_k_An_error_occurred_while_applying), 0, 1, 0, 0}, jpayne@68: {&__pyx_n_s_AttributeError, __pyx_k_AttributeError, sizeof(__pyx_k_AttributeError), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_u_BAI, __pyx_k_BAI, sizeof(__pyx_k_BAI), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_u_BAM, __pyx_k_BAM, sizeof(__pyx_k_BAM), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_u_BCF, __pyx_k_BCF, sizeof(__pyx_k_BCF), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_u_BED, __pyx_k_BED, sizeof(__pyx_k_BED), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_u_BGZF, __pyx_k_BGZF, sizeof(__pyx_k_BGZF), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_u_BINARY_FORMAT, __pyx_k_BINARY_FORMAT, sizeof(__pyx_k_BINARY_FORMAT), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_s_CFalse, __pyx_k_CFalse, sizeof(__pyx_k_CFalse), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_u_CRAI, __pyx_k_CRAI, sizeof(__pyx_k_CRAI), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_u_CRAM, __pyx_k_CRAM, sizeof(__pyx_k_CRAM), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_u_CSI, __pyx_k_CSI, sizeof(__pyx_k_CSI), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_s_CTrue, __pyx_k_CTrue, sizeof(__pyx_k_CTrue), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_u_CUSTOM, __pyx_k_CUSTOM, sizeof(__pyx_k_CUSTOM), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_s_CallableValue, 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sizeof(__pyx_k_Flushing), 0, 1, 0, 0}, jpayne@68: {&__pyx_n_u_GZI, __pyx_k_GZI, sizeof(__pyx_k_GZI), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_u_GZIP, __pyx_k_GZIP, sizeof(__pyx_k_GZIP), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_s_HFile, __pyx_k_HFile, sizeof(__pyx_k_HFile), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_u_HFile, __pyx_k_HFile, sizeof(__pyx_k_HFile), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_s_HFile___enter, __pyx_k_HFile___enter, sizeof(__pyx_k_HFile___enter), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HFile___exit, __pyx_k_HFile___exit, sizeof(__pyx_k_HFile___exit), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HFile___reduce_cython, __pyx_k_HFile___reduce_cython, sizeof(__pyx_k_HFile___reduce_cython), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HFile___setstate_cython, __pyx_k_HFile___setstate_cython, sizeof(__pyx_k_HFile___setstate_cython), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HFile_close, __pyx_k_HFile_close, sizeof(__pyx_k_HFile_close), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HFile_fileno, __pyx_k_HFile_fileno, 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{&__pyx_n_s_HFile_seekable, __pyx_k_HFile_seekable, sizeof(__pyx_k_HFile_seekable), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HFile_tell, __pyx_k_HFile_tell, sizeof(__pyx_k_HFile_tell), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HFile_truncate, __pyx_k_HFile_truncate, sizeof(__pyx_k_HFile_truncate), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HFile_writable, __pyx_k_HFile_writable, sizeof(__pyx_k_HFile_writable), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HFile_write, __pyx_k_HFile_write, sizeof(__pyx_k_HFile_write), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HFile_writelines, __pyx_k_HFile_writelines, sizeof(__pyx_k_HFile_writelines), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HTSFile, __pyx_k_HTSFile, sizeof(__pyx_k_HTSFile), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_u_HTSFile, __pyx_k_HTSFile, sizeof(__pyx_k_HTSFile), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_s_HTSFile___enter, __pyx_k_HTSFile___enter, sizeof(__pyx_k_HTSFile___enter), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HTSFile___exit, __pyx_k_HTSFile___exit, sizeof(__pyx_k_HTSFile___exit), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HTSFile___reduce_cython, __pyx_k_HTSFile___reduce_cython, sizeof(__pyx_k_HTSFile___reduce_cython), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HTSFile___setstate_cython, __pyx_k_HTSFile___setstate_cython, sizeof(__pyx_k_HTSFile___setstate_cython), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HTSFile_add_hts_options, __pyx_k_HTSFile_add_hts_options, sizeof(__pyx_k_HTSFile_add_hts_options), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HTSFile_check_truncation, __pyx_k_HTSFile_check_truncation, sizeof(__pyx_k_HTSFile_check_truncation), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HTSFile_close, __pyx_k_HTSFile_close, sizeof(__pyx_k_HTSFile_close), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HTSFile_flush, __pyx_k_HTSFile_flush, sizeof(__pyx_k_HTSFile_flush), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HTSFile_get_reference_name, __pyx_k_HTSFile_get_reference_name, sizeof(__pyx_k_HTSFile_get_reference_name), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_HTSFile_get_tid, 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{&__pyx_kp_u_I_O_operation_on_closed_file, __pyx_k_I_O_operation_on_closed_file, sizeof(__pyx_k_I_O_operation_on_closed_file), 0, 1, 0, 0}, jpayne@68: {&__pyx_n_s_IndexError, __pyx_k_IndexError, sizeof(__pyx_k_IndexError), 0, 0, 1, 1}, jpayne@68: {&__pyx_kp_u_Invalid_format_option_specified, __pyx_k_Invalid_format_option_specified, sizeof(__pyx_k_Invalid_format_option_specified), 0, 1, 0, 0}, jpayne@68: {&__pyx_n_s_MemoryError, __pyx_k_MemoryError, sizeof(__pyx_k_MemoryError), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_u_NONE, __pyx_k_NONE, sizeof(__pyx_k_NONE), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_s_NotImplementedError, __pyx_k_NotImplementedError, sizeof(__pyx_k_NotImplementedError), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_OSError, __pyx_k_OSError, sizeof(__pyx_k_OSError), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_OverflowError, __pyx_k_OverflowError, sizeof(__pyx_k_OverflowError), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_u_REGIONS, __pyx_k_REGIONS, sizeof(__pyx_k_REGIONS), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_s_RuntimeError, __pyx_k_RuntimeError, sizeof(__pyx_k_RuntimeError), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_u_SAM, __pyx_k_SAM, sizeof(__pyx_k_SAM), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_s_SEEK_SET, __pyx_k_SEEK_SET, sizeof(__pyx_k_SEEK_SET), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_s_StopIteration, __pyx_k_StopIteration, sizeof(__pyx_k_StopIteration), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_u_TBI, __pyx_k_TBI, sizeof(__pyx_k_TBI), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_u_TEXT_FORMAT, __pyx_k_TEXT_FORMAT, sizeof(__pyx_k_TEXT_FORMAT), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_s_TypeError, __pyx_k_TypeError, sizeof(__pyx_k_TypeError), 0, 0, 1, 1}, jpayne@68: {&__pyx_n_u_UNKNOWN, __pyx_k_UNKNOWN, sizeof(__pyx_k_UNKNOWN), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_u_VARIANTS, __pyx_k_VARIANTS, sizeof(__pyx_k_VARIANTS), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_u_VCF, __pyx_k_VCF, sizeof(__pyx_k_VCF), 0, 1, 0, 1}, jpayne@68: {&__pyx_n_s_ValueError, __pyx_k_ValueError, sizeof(__pyx_k_ValueError), 0, 0, 1, 1}, jpayne@68: 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jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":714 jpayne@68: * return self.get_tid(contig) != -1 jpayne@68: * jpayne@68: * def get_tid(self, contig): # <<<<<<<<<<<<<< jpayne@68: * """ jpayne@68: * return the numerical :term:`tid` corresponding to jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_10libchtslib_7HTSFile_29get_tid, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_HTSFile_get_tid, NULL, __pyx_n_s_pysam_libchtslib, __pyx_d, ((PyObject *)__pyx_codeobj__62)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 714, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: if (__Pyx_SetItemOnTypeDict((PyObject *)__pyx_ptype_5pysam_10libchtslib_HTSFile, __pyx_n_s_get_tid, __pyx_t_3) < 0) __PYX_ERR(0, 714, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: PyType_Modified(__pyx_ptype_5pysam_10libchtslib_HTSFile); jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":723 jpayne@68: * raise NotImplementedError() jpayne@68: * jpayne@68: * def get_reference_name(self, tid): # <<<<<<<<<<<<<< jpayne@68: * """ jpayne@68: * return :term:`contig` name corresponding to numerical :term:`tid` jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_10libchtslib_7HTSFile_31get_reference_name, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_HTSFile_get_reference_name, NULL, __pyx_n_s_pysam_libchtslib, __pyx_d, ((PyObject *)__pyx_codeobj__63)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 723, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: if (__Pyx_SetItemOnTypeDict((PyObject *)__pyx_ptype_5pysam_10libchtslib_HTSFile, __pyx_n_s_get_reference_name, __pyx_t_3) < 0) __PYX_ERR(0, 723, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: PyType_Modified(__pyx_ptype_5pysam_10libchtslib_HTSFile); jpayne@68: jpayne@68: /* "(tree fragment)":1 jpayne@68: * def __reduce_cython__(self): # <<<<<<<<<<<<<< jpayne@68: * raise TypeError, "no default __reduce__ due to non-trivial __cinit__" jpayne@68: * def __setstate_cython__(self, __pyx_state): jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_10libchtslib_7HTSFile_33__reduce_cython__, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_HTSFile___reduce_cython, NULL, __pyx_n_s_pysam_libchtslib, __pyx_d, ((PyObject *)__pyx_codeobj__64)); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: if (PyDict_SetItem(__pyx_d, __pyx_n_s_reduce_cython, __pyx_t_3) < 0) __PYX_ERR(1, 1, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: jpayne@68: /* "(tree fragment)":3 jpayne@68: * def __reduce_cython__(self): jpayne@68: * raise TypeError, "no default __reduce__ due to non-trivial __cinit__" jpayne@68: * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<< jpayne@68: * raise TypeError, "no default __reduce__ due to non-trivial __cinit__" jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_5pysam_10libchtslib_7HTSFile_35__setstate_cython__, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_HTSFile___setstate_cython, NULL, __pyx_n_s_pysam_libchtslib, __pyx_d, ((PyObject *)__pyx_codeobj__65)); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 3, __pyx_L1_error) jpayne@68: __Pyx_GOTREF(__pyx_t_3); jpayne@68: if (PyDict_SetItem(__pyx_d, __pyx_n_s_setstate_cython, __pyx_t_3) < 0) __PYX_ERR(1, 3, __pyx_L1_error) jpayne@68: __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; jpayne@68: jpayne@68: /* "pysam/libchtslib.pyx":1 jpayne@68: * # cython: language_level=3 # <<<<<<<<<<<<<< jpayne@68: * # cython: embedsignature=True jpayne@68: * # cython: profile=True jpayne@68: */ jpayne@68: __pyx_t_3 = __Pyx_PyDict_NewPresized(0); 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jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* BytesEquals */ jpayne@68: static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) { jpayne@68: #if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: return PyObject_RichCompareBool(s1, s2, equals); jpayne@68: #else jpayne@68: if (s1 == s2) { jpayne@68: return (equals == Py_EQ); jpayne@68: } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) { jpayne@68: const char *ps1, *ps2; jpayne@68: Py_ssize_t length = PyBytes_GET_SIZE(s1); jpayne@68: if (length != PyBytes_GET_SIZE(s2)) jpayne@68: return (equals == Py_NE); jpayne@68: ps1 = PyBytes_AS_STRING(s1); jpayne@68: ps2 = PyBytes_AS_STRING(s2); jpayne@68: if (ps1[0] != ps2[0]) { jpayne@68: return (equals == Py_NE); jpayne@68: } else if (length == 1) { jpayne@68: return (equals == Py_EQ); jpayne@68: } else { jpayne@68: int result; jpayne@68: #if CYTHON_USE_UNICODE_INTERNALS && (PY_VERSION_HEX < 0x030B0000) jpayne@68: Py_hash_t hash1, hash2; jpayne@68: hash1 = ((PyBytesObject*)s1)->ob_shash; jpayne@68: hash2 = ((PyBytesObject*)s2)->ob_shash; jpayne@68: if (hash1 != hash2 && hash1 != -1 && hash2 != -1) { jpayne@68: return (equals == Py_NE); jpayne@68: } jpayne@68: #endif jpayne@68: result = memcmp(ps1, ps2, (size_t)length); jpayne@68: return (equals == Py_EQ) ? (result == 0) : (result != 0); jpayne@68: } jpayne@68: } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) { jpayne@68: return (equals == Py_NE); jpayne@68: } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) { jpayne@68: return (equals == Py_NE); jpayne@68: } else { jpayne@68: int result; jpayne@68: PyObject* py_result = PyObject_RichCompare(s1, s2, equals); jpayne@68: if (!py_result) jpayne@68: return -1; jpayne@68: result = __Pyx_PyObject_IsTrue(py_result); jpayne@68: Py_DECREF(py_result); jpayne@68: return result; jpayne@68: } jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: /* UnicodeEquals */ jpayne@68: static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) { jpayne@68: #if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: return PyObject_RichCompareBool(s1, s2, equals); jpayne@68: #else jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: PyObject* owned_ref = NULL; jpayne@68: #endif jpayne@68: int s1_is_unicode, s2_is_unicode; jpayne@68: if (s1 == s2) { jpayne@68: goto return_eq; jpayne@68: } jpayne@68: s1_is_unicode = PyUnicode_CheckExact(s1); jpayne@68: s2_is_unicode = PyUnicode_CheckExact(s2); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if ((s1_is_unicode & (!s2_is_unicode)) && PyString_CheckExact(s2)) { jpayne@68: owned_ref = PyUnicode_FromObject(s2); jpayne@68: if (unlikely(!owned_ref)) jpayne@68: return -1; jpayne@68: s2 = owned_ref; jpayne@68: s2_is_unicode = 1; jpayne@68: } else if ((s2_is_unicode & (!s1_is_unicode)) && PyString_CheckExact(s1)) { jpayne@68: owned_ref = PyUnicode_FromObject(s1); jpayne@68: if (unlikely(!owned_ref)) jpayne@68: return -1; jpayne@68: s1 = owned_ref; jpayne@68: s1_is_unicode = 1; jpayne@68: } else if (((!s2_is_unicode) & (!s1_is_unicode))) { jpayne@68: return __Pyx_PyBytes_Equals(s1, s2, equals); jpayne@68: } jpayne@68: #endif jpayne@68: if (s1_is_unicode & s2_is_unicode) { jpayne@68: Py_ssize_t length; jpayne@68: int kind; jpayne@68: void *data1, *data2; jpayne@68: if (unlikely(__Pyx_PyUnicode_READY(s1) < 0) || unlikely(__Pyx_PyUnicode_READY(s2) < 0)) jpayne@68: return -1; jpayne@68: length = __Pyx_PyUnicode_GET_LENGTH(s1); jpayne@68: if (length != __Pyx_PyUnicode_GET_LENGTH(s2)) { jpayne@68: goto return_ne; jpayne@68: } jpayne@68: #if CYTHON_USE_UNICODE_INTERNALS jpayne@68: { jpayne@68: Py_hash_t hash1, hash2; jpayne@68: #if CYTHON_PEP393_ENABLED jpayne@68: hash1 = ((PyASCIIObject*)s1)->hash; jpayne@68: hash2 = ((PyASCIIObject*)s2)->hash; jpayne@68: #else jpayne@68: hash1 = ((PyUnicodeObject*)s1)->hash; jpayne@68: hash2 = ((PyUnicodeObject*)s2)->hash; jpayne@68: #endif jpayne@68: if (hash1 != hash2 && hash1 != -1 && hash2 != -1) { jpayne@68: goto return_ne; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: kind = __Pyx_PyUnicode_KIND(s1); jpayne@68: if (kind != __Pyx_PyUnicode_KIND(s2)) { jpayne@68: goto return_ne; jpayne@68: } jpayne@68: data1 = __Pyx_PyUnicode_DATA(s1); jpayne@68: data2 = __Pyx_PyUnicode_DATA(s2); jpayne@68: if (__Pyx_PyUnicode_READ(kind, data1, 0) != __Pyx_PyUnicode_READ(kind, data2, 0)) { jpayne@68: goto return_ne; jpayne@68: } else if (length == 1) { jpayne@68: goto return_eq; jpayne@68: } else { jpayne@68: int result = memcmp(data1, data2, (size_t)(length * kind)); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: Py_XDECREF(owned_ref); jpayne@68: #endif jpayne@68: return (equals == Py_EQ) ? (result == 0) : (result != 0); jpayne@68: } jpayne@68: } else if ((s1 == Py_None) & s2_is_unicode) { jpayne@68: goto return_ne; jpayne@68: } else if ((s2 == Py_None) & s1_is_unicode) { jpayne@68: goto return_ne; jpayne@68: } else { jpayne@68: int result; jpayne@68: PyObject* py_result = PyObject_RichCompare(s1, s2, equals); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: Py_XDECREF(owned_ref); jpayne@68: #endif jpayne@68: if (!py_result) jpayne@68: return -1; jpayne@68: result = __Pyx_PyObject_IsTrue(py_result); jpayne@68: Py_DECREF(py_result); jpayne@68: return result; jpayne@68: } jpayne@68: return_eq: jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: Py_XDECREF(owned_ref); jpayne@68: #endif jpayne@68: return (equals == Py_EQ); jpayne@68: return_ne: jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: Py_XDECREF(owned_ref); jpayne@68: #endif jpayne@68: return (equals == Py_NE); jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: /* fastcall */ jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: static CYTHON_INLINE PyObject * __Pyx_GetKwValue_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues, PyObject *s) jpayne@68: { jpayne@68: Py_ssize_t i, n = PyTuple_GET_SIZE(kwnames); jpayne@68: for (i = 0; i < n; i++) jpayne@68: { jpayne@68: if (s == PyTuple_GET_ITEM(kwnames, i)) return kwvalues[i]; jpayne@68: } jpayne@68: for (i = 0; i < n; i++) jpayne@68: { jpayne@68: int eq = __Pyx_PyUnicode_Equals(s, PyTuple_GET_ITEM(kwnames, i), Py_EQ); jpayne@68: if (unlikely(eq != 0)) { jpayne@68: if (unlikely(eq < 0)) return NULL; jpayne@68: return kwvalues[i]; jpayne@68: } jpayne@68: } jpayne@68: return NULL; jpayne@68: } jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 jpayne@68: CYTHON_UNUSED static PyObject *__Pyx_KwargsAsDict_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues) { jpayne@68: Py_ssize_t i, nkwargs = PyTuple_GET_SIZE(kwnames); jpayne@68: PyObject *dict; jpayne@68: dict = PyDict_New(); jpayne@68: if (unlikely(!dict)) jpayne@68: return NULL; jpayne@68: for (i=0; if_trace == NULL) { jpayne@68: Py_INCREF(Py_None); jpayne@68: (*frame)->f_trace = Py_None; jpayne@68: } jpayne@68: #if PY_VERSION_HEX < 0x030400B1 jpayne@68: } else { jpayne@68: (*frame)->f_tstate = tstate; jpayne@68: #endif jpayne@68: } jpayne@68: __Pyx_PyFrame_SetLineNumber(*frame, firstlineno); jpayne@68: retval = 1; jpayne@68: __Pyx_EnterTracing(tstate); jpayne@68: __Pyx_ErrFetchInState(tstate, &type, &value, &traceback); jpayne@68: #if CYTHON_TRACE jpayne@68: if (tstate->c_tracefunc) jpayne@68: retval = tstate->c_tracefunc(tstate->c_traceobj, *frame, PyTrace_CALL, NULL) == 0; jpayne@68: if (retval && tstate->c_profilefunc) jpayne@68: #endif jpayne@68: retval = tstate->c_profilefunc(tstate->c_profileobj, *frame, PyTrace_CALL, NULL) == 0; jpayne@68: __Pyx_LeaveTracing(tstate); jpayne@68: if (retval) { jpayne@68: __Pyx_ErrRestoreInState(tstate, type, value, traceback); jpayne@68: return __Pyx_IsTracing(tstate, 0, 0) && retval; jpayne@68: } else { jpayne@68: Py_XDECREF(type); jpayne@68: Py_XDECREF(value); jpayne@68: Py_XDECREF(traceback); jpayne@68: return -1; jpayne@68: } jpayne@68: } jpayne@68: static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno) { jpayne@68: PyCodeObject *py_code = 0; jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: py_code = PyCode_NewEmpty(srcfile, funcname, firstlineno); jpayne@68: if (likely(py_code)) { jpayne@68: py_code->co_flags |= CO_OPTIMIZED | CO_NEWLOCALS; jpayne@68: } jpayne@68: #else jpayne@68: PyObject *py_srcfile = 0; jpayne@68: PyObject *py_funcname = 0; jpayne@68: py_funcname = PyString_FromString(funcname); jpayne@68: if (unlikely(!py_funcname)) goto bad; jpayne@68: py_srcfile = PyString_FromString(srcfile); jpayne@68: if (unlikely(!py_srcfile)) goto bad; jpayne@68: py_code = PyCode_New( jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: CO_OPTIMIZED | CO_NEWLOCALS, jpayne@68: __pyx_empty_bytes, /*PyObject *code,*/ jpayne@68: __pyx_empty_tuple, /*PyObject *consts,*/ jpayne@68: __pyx_empty_tuple, /*PyObject *names,*/ jpayne@68: __pyx_empty_tuple, /*PyObject *varnames,*/ jpayne@68: __pyx_empty_tuple, /*PyObject *freevars,*/ jpayne@68: __pyx_empty_tuple, /*PyObject *cellvars,*/ jpayne@68: py_srcfile, /*PyObject *filename,*/ jpayne@68: py_funcname, /*PyObject *name,*/ jpayne@68: firstlineno, jpayne@68: __pyx_empty_bytes /*PyObject *lnotab*/ jpayne@68: ); jpayne@68: bad: jpayne@68: Py_XDECREF(py_srcfile); jpayne@68: Py_XDECREF(py_funcname); jpayne@68: #endif jpayne@68: return py_code; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* RaiseDoubleKeywords */ jpayne@68: static void __Pyx_RaiseDoubleKeywordsError( jpayne@68: const char* func_name, jpayne@68: PyObject* kw_name) jpayne@68: { jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: "%s() got multiple values for keyword argument '%U'", func_name, kw_name); jpayne@68: #else jpayne@68: "%s() got multiple values for keyword argument '%s'", func_name, jpayne@68: PyString_AsString(kw_name)); jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: /* ParseKeywords */ jpayne@68: static int __Pyx_ParseOptionalKeywords( jpayne@68: PyObject *kwds, jpayne@68: PyObject *const *kwvalues, jpayne@68: PyObject **argnames[], jpayne@68: PyObject *kwds2, jpayne@68: PyObject *values[], jpayne@68: Py_ssize_t num_pos_args, jpayne@68: const char* function_name) jpayne@68: { jpayne@68: PyObject *key = 0, *value = 0; jpayne@68: Py_ssize_t pos = 0; jpayne@68: PyObject*** name; jpayne@68: PyObject*** first_kw_arg = argnames + num_pos_args; jpayne@68: int kwds_is_tuple = CYTHON_METH_FASTCALL && likely(PyTuple_Check(kwds)); jpayne@68: while (1) { jpayne@68: Py_XDECREF(key); key = NULL; jpayne@68: Py_XDECREF(value); value = NULL; jpayne@68: if (kwds_is_tuple) { jpayne@68: Py_ssize_t size; jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: size = PyTuple_GET_SIZE(kwds); jpayne@68: #else jpayne@68: size = PyTuple_Size(kwds); jpayne@68: if (size < 0) goto bad; jpayne@68: #endif jpayne@68: if (pos >= size) break; jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: key = __Pyx_PySequence_ITEM(kwds, pos); jpayne@68: if (!key) goto bad; jpayne@68: #elif CYTHON_ASSUME_SAFE_MACROS jpayne@68: key = PyTuple_GET_ITEM(kwds, pos); jpayne@68: #else jpayne@68: key = PyTuple_GetItem(kwds, pos); jpayne@68: if (!key) goto bad; jpayne@68: #endif jpayne@68: value = kwvalues[pos]; jpayne@68: pos++; jpayne@68: } jpayne@68: else jpayne@68: { jpayne@68: if (!PyDict_Next(kwds, &pos, &key, &value)) break; jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: Py_INCREF(key); jpayne@68: #endif jpayne@68: } jpayne@68: name = first_kw_arg; jpayne@68: while (*name && (**name != key)) name++; jpayne@68: if (*name) { jpayne@68: values[name-argnames] = value; jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: Py_INCREF(value); jpayne@68: Py_DECREF(key); jpayne@68: #endif jpayne@68: key = NULL; jpayne@68: value = NULL; jpayne@68: continue; jpayne@68: } jpayne@68: #if !CYTHON_AVOID_BORROWED_REFS jpayne@68: Py_INCREF(key); jpayne@68: #endif jpayne@68: Py_INCREF(value); jpayne@68: name = first_kw_arg; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(PyString_Check(key))) { jpayne@68: while (*name) { jpayne@68: if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) jpayne@68: && _PyString_Eq(**name, key)) { jpayne@68: values[name-argnames] = value; jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: value = NULL; jpayne@68: #endif jpayne@68: break; jpayne@68: } jpayne@68: name++; jpayne@68: } jpayne@68: if (*name) continue; jpayne@68: else { jpayne@68: PyObject*** argname = argnames; jpayne@68: while (argname != first_kw_arg) { jpayne@68: if ((**argname == key) || ( jpayne@68: (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key)) jpayne@68: && _PyString_Eq(**argname, key))) { jpayne@68: goto arg_passed_twice; jpayne@68: } jpayne@68: argname++; jpayne@68: } jpayne@68: } jpayne@68: } else jpayne@68: #endif jpayne@68: if (likely(PyUnicode_Check(key))) { jpayne@68: while (*name) { jpayne@68: int cmp = ( jpayne@68: #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 jpayne@68: (__Pyx_PyUnicode_GET_LENGTH(**name) != __Pyx_PyUnicode_GET_LENGTH(key)) ? 1 : jpayne@68: #endif jpayne@68: PyUnicode_Compare(**name, key) jpayne@68: ); jpayne@68: if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; jpayne@68: if (cmp == 0) { jpayne@68: values[name-argnames] = value; jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: value = NULL; jpayne@68: #endif jpayne@68: break; jpayne@68: } jpayne@68: name++; jpayne@68: } jpayne@68: if (*name) continue; jpayne@68: else { jpayne@68: PyObject*** argname = argnames; jpayne@68: while (argname != first_kw_arg) { jpayne@68: int cmp = (**argname == key) ? 0 : jpayne@68: #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 jpayne@68: (__Pyx_PyUnicode_GET_LENGTH(**argname) != __Pyx_PyUnicode_GET_LENGTH(key)) ? 1 : jpayne@68: #endif jpayne@68: PyUnicode_Compare(**argname, key); jpayne@68: if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; jpayne@68: if (cmp == 0) goto arg_passed_twice; jpayne@68: argname++; jpayne@68: } jpayne@68: } jpayne@68: } else jpayne@68: goto invalid_keyword_type; jpayne@68: if (kwds2) { jpayne@68: if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; jpayne@68: } else { jpayne@68: goto invalid_keyword; jpayne@68: } jpayne@68: } jpayne@68: Py_XDECREF(key); jpayne@68: Py_XDECREF(value); jpayne@68: return 0; jpayne@68: arg_passed_twice: jpayne@68: __Pyx_RaiseDoubleKeywordsError(function_name, key); jpayne@68: goto bad; jpayne@68: invalid_keyword_type: jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() keywords must be strings", function_name); jpayne@68: goto bad; jpayne@68: invalid_keyword: jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() got an unexpected keyword argument '%.200s'", jpayne@68: function_name, PyString_AsString(key)); jpayne@68: #else jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%s() got an unexpected keyword argument '%U'", jpayne@68: function_name, key); jpayne@68: #endif jpayne@68: bad: jpayne@68: Py_XDECREF(key); jpayne@68: Py_XDECREF(value); jpayne@68: return -1; jpayne@68: } jpayne@68: jpayne@68: /* RaiseArgTupleInvalid */ jpayne@68: static void __Pyx_RaiseArgtupleInvalid( jpayne@68: const char* func_name, jpayne@68: int exact, jpayne@68: Py_ssize_t num_min, jpayne@68: Py_ssize_t num_max, jpayne@68: Py_ssize_t num_found) jpayne@68: { jpayne@68: Py_ssize_t num_expected; jpayne@68: const char *more_or_less; jpayne@68: if (num_found < num_min) { jpayne@68: num_expected = num_min; jpayne@68: more_or_less = "at least"; jpayne@68: } else { jpayne@68: num_expected = num_max; jpayne@68: more_or_less = "at most"; jpayne@68: } jpayne@68: if (exact) { jpayne@68: more_or_less = "exactly"; jpayne@68: } jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@68: func_name, more_or_less, num_expected, jpayne@68: (num_expected == 1) ? "" : "s", num_found); jpayne@68: } jpayne@68: jpayne@68: /* PyFunctionFastCall */ jpayne@68: #if CYTHON_FAST_PYCALL && !CYTHON_VECTORCALL jpayne@68: static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na, jpayne@68: PyObject *globals) { jpayne@68: PyFrameObject *f; jpayne@68: PyThreadState *tstate = __Pyx_PyThreadState_Current; jpayne@68: PyObject **fastlocals; jpayne@68: Py_ssize_t i; jpayne@68: PyObject *result; jpayne@68: assert(globals != NULL); jpayne@68: /* XXX Perhaps we should create a specialized jpayne@68: PyFrame_New() that doesn't take locals, but does jpayne@68: take builtins without sanity checking them. jpayne@68: */ jpayne@68: assert(tstate != NULL); jpayne@68: f = PyFrame_New(tstate, co, globals, NULL); jpayne@68: if (f == NULL) { jpayne@68: return NULL; jpayne@68: } jpayne@68: fastlocals = __Pyx_PyFrame_GetLocalsplus(f); jpayne@68: for (i = 0; i < na; i++) { jpayne@68: Py_INCREF(*args); jpayne@68: fastlocals[i] = *args++; jpayne@68: } jpayne@68: result = PyEval_EvalFrameEx(f,0); jpayne@68: ++tstate->recursion_depth; jpayne@68: Py_DECREF(f); jpayne@68: --tstate->recursion_depth; jpayne@68: return result; jpayne@68: } jpayne@68: static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs) { jpayne@68: PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func); jpayne@68: PyObject *globals = PyFunction_GET_GLOBALS(func); jpayne@68: PyObject *argdefs = PyFunction_GET_DEFAULTS(func); jpayne@68: PyObject *closure; jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: PyObject *kwdefs; jpayne@68: #endif jpayne@68: PyObject *kwtuple, **k; jpayne@68: PyObject **d; jpayne@68: Py_ssize_t nd; jpayne@68: Py_ssize_t nk; jpayne@68: PyObject *result; jpayne@68: assert(kwargs == NULL || PyDict_Check(kwargs)); jpayne@68: nk = kwargs ? PyDict_Size(kwargs) : 0; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) { jpayne@68: return NULL; jpayne@68: } jpayne@68: #else jpayne@68: if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) { jpayne@68: return NULL; jpayne@68: } jpayne@68: #endif jpayne@68: if ( jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: co->co_kwonlyargcount == 0 && jpayne@68: #endif jpayne@68: likely(kwargs == NULL || nk == 0) && jpayne@68: co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) { jpayne@68: if (argdefs == NULL && co->co_argcount == nargs) { jpayne@68: result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals); jpayne@68: goto done; jpayne@68: } jpayne@68: else if (nargs == 0 && argdefs != NULL jpayne@68: && co->co_argcount == Py_SIZE(argdefs)) { jpayne@68: /* function called with no arguments, but all parameters have jpayne@68: a default value: use default values as arguments .*/ jpayne@68: args = &PyTuple_GET_ITEM(argdefs, 0); jpayne@68: result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals); jpayne@68: goto done; jpayne@68: } jpayne@68: } jpayne@68: if (kwargs != NULL) { jpayne@68: Py_ssize_t pos, i; jpayne@68: kwtuple = PyTuple_New(2 * nk); jpayne@68: if (kwtuple == NULL) { jpayne@68: result = NULL; jpayne@68: goto done; jpayne@68: } jpayne@68: k = &PyTuple_GET_ITEM(kwtuple, 0); jpayne@68: pos = i = 0; jpayne@68: while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) { jpayne@68: Py_INCREF(k[i]); jpayne@68: Py_INCREF(k[i+1]); jpayne@68: i += 2; jpayne@68: } jpayne@68: nk = i / 2; jpayne@68: } jpayne@68: else { jpayne@68: kwtuple = NULL; jpayne@68: k = NULL; jpayne@68: } jpayne@68: closure = PyFunction_GET_CLOSURE(func); jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: kwdefs = PyFunction_GET_KW_DEFAULTS(func); jpayne@68: #endif jpayne@68: if (argdefs != NULL) { jpayne@68: d = &PyTuple_GET_ITEM(argdefs, 0); jpayne@68: nd = Py_SIZE(argdefs); jpayne@68: } jpayne@68: else { jpayne@68: d = NULL; jpayne@68: nd = 0; jpayne@68: } jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL, jpayne@68: args, (int)nargs, jpayne@68: k, (int)nk, jpayne@68: d, (int)nd, kwdefs, closure); jpayne@68: #else jpayne@68: result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL, jpayne@68: args, (int)nargs, jpayne@68: k, (int)nk, jpayne@68: d, (int)nd, closure); jpayne@68: #endif jpayne@68: Py_XDECREF(kwtuple); jpayne@68: done: jpayne@68: Py_LeaveRecursiveCall(); jpayne@68: return result; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectCall */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { jpayne@68: PyObject *result; jpayne@68: ternaryfunc call = Py_TYPE(func)->tp_call; jpayne@68: if (unlikely(!call)) jpayne@68: return PyObject_Call(func, arg, kw); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) jpayne@68: return NULL; jpayne@68: #else jpayne@68: if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) jpayne@68: return NULL; jpayne@68: #endif jpayne@68: result = (*call)(func, arg, kw); jpayne@68: Py_LeaveRecursiveCall(); jpayne@68: if (unlikely(!result) && unlikely(!PyErr_Occurred())) { jpayne@68: PyErr_SetString( jpayne@68: PyExc_SystemError, jpayne@68: "NULL result without error in PyObject_Call"); jpayne@68: } jpayne@68: return result; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectCallMethO */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) { jpayne@68: PyObject *self, *result; jpayne@68: PyCFunction cfunc; jpayne@68: cfunc = __Pyx_CyOrPyCFunction_GET_FUNCTION(func); jpayne@68: self = __Pyx_CyOrPyCFunction_GET_SELF(func); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) jpayne@68: return NULL; jpayne@68: #else jpayne@68: if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) jpayne@68: return NULL; jpayne@68: #endif jpayne@68: result = cfunc(self, arg); jpayne@68: Py_LeaveRecursiveCall(); jpayne@68: if (unlikely(!result) && unlikely(!PyErr_Occurred())) { jpayne@68: PyErr_SetString( jpayne@68: PyExc_SystemError, jpayne@68: "NULL result without error in PyObject_Call"); jpayne@68: } jpayne@68: return result; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectFastCall */ jpayne@68: #if PY_VERSION_HEX < 0x03090000 || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static PyObject* __Pyx_PyObject_FastCall_fallback(PyObject *func, PyObject **args, size_t nargs, PyObject *kwargs) { jpayne@68: PyObject *argstuple; jpayne@68: PyObject *result = 0; jpayne@68: size_t i; jpayne@68: argstuple = PyTuple_New((Py_ssize_t)nargs); jpayne@68: if (unlikely(!argstuple)) return NULL; jpayne@68: for (i = 0; i < nargs; i++) { jpayne@68: Py_INCREF(args[i]); jpayne@68: if (__Pyx_PyTuple_SET_ITEM(argstuple, (Py_ssize_t)i, args[i]) < 0) goto bad; jpayne@68: } jpayne@68: result = __Pyx_PyObject_Call(func, argstuple, kwargs); jpayne@68: bad: jpayne@68: Py_DECREF(argstuple); jpayne@68: return result; jpayne@68: } jpayne@68: #endif jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_FastCallDict(PyObject *func, PyObject **args, size_t _nargs, PyObject *kwargs) { jpayne@68: Py_ssize_t nargs = __Pyx_PyVectorcall_NARGS(_nargs); jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: if (nargs == 0 && kwargs == NULL) { jpayne@68: if (__Pyx_CyOrPyCFunction_Check(func) && likely( __Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_NOARGS)) jpayne@68: return __Pyx_PyObject_CallMethO(func, NULL); jpayne@68: } jpayne@68: else if (nargs == 1 && kwargs == NULL) { jpayne@68: if (__Pyx_CyOrPyCFunction_Check(func) && likely( __Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_O)) jpayne@68: return __Pyx_PyObject_CallMethO(func, args[0]); jpayne@68: } jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x030800B1 jpayne@68: #if CYTHON_FAST_PYCCALL jpayne@68: if (PyCFunction_Check(func)) { jpayne@68: if (kwargs) { jpayne@68: return _PyCFunction_FastCallDict(func, args, nargs, kwargs); jpayne@68: } else { jpayne@68: return _PyCFunction_FastCallKeywords(func, args, nargs, NULL); jpayne@68: } jpayne@68: } jpayne@68: #if PY_VERSION_HEX >= 0x030700A1 jpayne@68: if (!kwargs && __Pyx_IS_TYPE(func, &PyMethodDescr_Type)) { jpayne@68: return _PyMethodDescr_FastCallKeywords(func, args, nargs, NULL); jpayne@68: } jpayne@68: #endif jpayne@68: #endif jpayne@68: #if CYTHON_FAST_PYCALL jpayne@68: if (PyFunction_Check(func)) { jpayne@68: return __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs); jpayne@68: } jpayne@68: #endif jpayne@68: #endif jpayne@68: if (kwargs == NULL) { jpayne@68: #if CYTHON_VECTORCALL jpayne@68: #if PY_VERSION_HEX < 0x03090000 jpayne@68: vectorcallfunc f = _PyVectorcall_Function(func); jpayne@68: #else jpayne@68: vectorcallfunc f = PyVectorcall_Function(func); jpayne@68: #endif jpayne@68: if (f) { jpayne@68: return f(func, args, (size_t)nargs, NULL); jpayne@68: } jpayne@68: #elif defined(__Pyx_CyFunction_USED) && CYTHON_BACKPORT_VECTORCALL jpayne@68: if (__Pyx_CyFunction_CheckExact(func)) { jpayne@68: __pyx_vectorcallfunc f = __Pyx_CyFunction_func_vectorcall(func); jpayne@68: if (f) return f(func, args, (size_t)nargs, NULL); jpayne@68: } jpayne@68: #endif jpayne@68: } jpayne@68: if (nargs == 0) { jpayne@68: return __Pyx_PyObject_Call(func, __pyx_empty_tuple, kwargs); jpayne@68: } jpayne@68: #if PY_VERSION_HEX >= 0x03090000 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: return PyObject_VectorcallDict(func, args, (size_t)nargs, kwargs); jpayne@68: #else jpayne@68: return __Pyx_PyObject_FastCall_fallback(func, args, (size_t)nargs, kwargs); jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: /* WriteUnraisableException */ jpayne@68: static void __Pyx_WriteUnraisable(const char *name, int clineno, jpayne@68: int lineno, const char *filename, jpayne@68: int full_traceback, int nogil) { jpayne@68: PyObject *old_exc, *old_val, *old_tb; jpayne@68: PyObject *ctx; jpayne@68: __Pyx_PyThreadState_declare jpayne@68: #ifdef WITH_THREAD jpayne@68: PyGILState_STATE state; jpayne@68: if (nogil) jpayne@68: state = PyGILState_Ensure(); jpayne@68: else state = (PyGILState_STATE)0; jpayne@68: #endif jpayne@68: CYTHON_UNUSED_VAR(clineno); jpayne@68: CYTHON_UNUSED_VAR(lineno); jpayne@68: CYTHON_UNUSED_VAR(filename); jpayne@68: CYTHON_MAYBE_UNUSED_VAR(nogil); jpayne@68: __Pyx_PyThreadState_assign jpayne@68: __Pyx_ErrFetch(&old_exc, &old_val, &old_tb); jpayne@68: if (full_traceback) { jpayne@68: Py_XINCREF(old_exc); jpayne@68: Py_XINCREF(old_val); jpayne@68: Py_XINCREF(old_tb); jpayne@68: __Pyx_ErrRestore(old_exc, old_val, old_tb); jpayne@68: PyErr_PrintEx(0); jpayne@68: } jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: ctx = PyString_FromString(name); jpayne@68: #else jpayne@68: ctx = PyUnicode_FromString(name); jpayne@68: #endif jpayne@68: __Pyx_ErrRestore(old_exc, old_val, old_tb); jpayne@68: if (!ctx) { jpayne@68: PyErr_WriteUnraisable(Py_None); jpayne@68: } else { jpayne@68: PyErr_WriteUnraisable(ctx); jpayne@68: Py_DECREF(ctx); jpayne@68: } jpayne@68: #ifdef WITH_THREAD jpayne@68: if (nogil) jpayne@68: PyGILState_Release(state); jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: /* RaiseException */ jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { jpayne@68: __Pyx_PyThreadState_declare jpayne@68: CYTHON_UNUSED_VAR(cause); jpayne@68: Py_XINCREF(type); jpayne@68: if (!value || value == Py_None) jpayne@68: value = NULL; jpayne@68: else jpayne@68: Py_INCREF(value); jpayne@68: if (!tb || tb == Py_None) jpayne@68: tb = NULL; jpayne@68: else { jpayne@68: Py_INCREF(tb); jpayne@68: if (!PyTraceBack_Check(tb)) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "raise: arg 3 must be a traceback or None"); jpayne@68: goto raise_error; jpayne@68: } jpayne@68: } jpayne@68: if (PyType_Check(type)) { jpayne@68: #if CYTHON_COMPILING_IN_PYPY jpayne@68: if (!value) { jpayne@68: Py_INCREF(Py_None); jpayne@68: value = Py_None; jpayne@68: } jpayne@68: #endif jpayne@68: PyErr_NormalizeException(&type, &value, &tb); jpayne@68: } else { jpayne@68: if (value) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "instance exception may not have a separate value"); jpayne@68: goto raise_error; jpayne@68: } jpayne@68: value = type; jpayne@68: type = (PyObject*) Py_TYPE(type); jpayne@68: Py_INCREF(type); jpayne@68: if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "raise: exception class must be a subclass of BaseException"); jpayne@68: goto raise_error; jpayne@68: } jpayne@68: } jpayne@68: __Pyx_PyThreadState_assign jpayne@68: __Pyx_ErrRestore(type, value, tb); jpayne@68: return; jpayne@68: raise_error: jpayne@68: Py_XDECREF(value); jpayne@68: Py_XDECREF(type); jpayne@68: Py_XDECREF(tb); jpayne@68: return; jpayne@68: } jpayne@68: #else jpayne@68: static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { jpayne@68: PyObject* owned_instance = NULL; jpayne@68: if (tb == Py_None) { jpayne@68: tb = 0; jpayne@68: } else if (tb && !PyTraceBack_Check(tb)) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "raise: arg 3 must be a traceback or None"); jpayne@68: goto bad; jpayne@68: } jpayne@68: if (value == Py_None) jpayne@68: value = 0; jpayne@68: if (PyExceptionInstance_Check(type)) { jpayne@68: if (value) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "instance exception may not have a separate value"); jpayne@68: goto bad; jpayne@68: } jpayne@68: value = type; jpayne@68: type = (PyObject*) Py_TYPE(value); jpayne@68: } else if (PyExceptionClass_Check(type)) { jpayne@68: PyObject *instance_class = NULL; jpayne@68: if (value && PyExceptionInstance_Check(value)) { jpayne@68: instance_class = (PyObject*) Py_TYPE(value); jpayne@68: if (instance_class != type) { jpayne@68: int is_subclass = PyObject_IsSubclass(instance_class, type); jpayne@68: if (!is_subclass) { jpayne@68: instance_class = NULL; jpayne@68: } else if (unlikely(is_subclass == -1)) { jpayne@68: goto bad; jpayne@68: } else { jpayne@68: type = instance_class; jpayne@68: } jpayne@68: } jpayne@68: } jpayne@68: if (!instance_class) { jpayne@68: PyObject *args; jpayne@68: if (!value) jpayne@68: args = PyTuple_New(0); jpayne@68: else if (PyTuple_Check(value)) { jpayne@68: Py_INCREF(value); jpayne@68: args = value; jpayne@68: } else jpayne@68: args = PyTuple_Pack(1, value); jpayne@68: if (!args) jpayne@68: goto bad; jpayne@68: owned_instance = PyObject_Call(type, args, NULL); jpayne@68: Py_DECREF(args); jpayne@68: if (!owned_instance) jpayne@68: goto bad; jpayne@68: value = owned_instance; jpayne@68: if (!PyExceptionInstance_Check(value)) { jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "calling %R should have returned an instance of " jpayne@68: "BaseException, not %R", jpayne@68: type, Py_TYPE(value)); jpayne@68: goto bad; jpayne@68: } jpayne@68: } jpayne@68: } else { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "raise: exception class must be a subclass of BaseException"); jpayne@68: goto bad; jpayne@68: } jpayne@68: if (cause) { jpayne@68: PyObject *fixed_cause; jpayne@68: if (cause == Py_None) { jpayne@68: fixed_cause = NULL; jpayne@68: } else if (PyExceptionClass_Check(cause)) { jpayne@68: fixed_cause = PyObject_CallObject(cause, NULL); jpayne@68: if (fixed_cause == NULL) jpayne@68: goto bad; jpayne@68: } else if (PyExceptionInstance_Check(cause)) { jpayne@68: fixed_cause = cause; jpayne@68: Py_INCREF(fixed_cause); jpayne@68: } else { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "exception causes must derive from " jpayne@68: "BaseException"); jpayne@68: goto bad; jpayne@68: } jpayne@68: PyException_SetCause(value, fixed_cause); jpayne@68: } jpayne@68: PyErr_SetObject(type, value); jpayne@68: if (tb) { jpayne@68: #if PY_VERSION_HEX >= 0x030C00A6 jpayne@68: PyException_SetTraceback(value, tb); jpayne@68: #elif CYTHON_FAST_THREAD_STATE jpayne@68: PyThreadState *tstate = __Pyx_PyThreadState_Current; jpayne@68: PyObject* tmp_tb = tstate->curexc_traceback; jpayne@68: if (tb != tmp_tb) { jpayne@68: Py_INCREF(tb); jpayne@68: tstate->curexc_traceback = tb; jpayne@68: Py_XDECREF(tmp_tb); jpayne@68: } jpayne@68: #else jpayne@68: PyObject *tmp_type, *tmp_value, *tmp_tb; jpayne@68: PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb); jpayne@68: Py_INCREF(tb); jpayne@68: PyErr_Restore(tmp_type, tmp_value, tb); jpayne@68: Py_XDECREF(tmp_tb); jpayne@68: #endif jpayne@68: } jpayne@68: bad: jpayne@68: Py_XDECREF(owned_instance); jpayne@68: return; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* KeywordStringCheck */ jpayne@68: static int __Pyx_CheckKeywordStrings( jpayne@68: PyObject *kw, jpayne@68: const char* function_name, jpayne@68: int kw_allowed) jpayne@68: { jpayne@68: PyObject* key = 0; jpayne@68: Py_ssize_t pos = 0; jpayne@68: #if CYTHON_COMPILING_IN_PYPY jpayne@68: if (!kw_allowed && PyDict_Next(kw, &pos, &key, 0)) jpayne@68: goto invalid_keyword; jpayne@68: return 1; jpayne@68: #else jpayne@68: if (CYTHON_METH_FASTCALL && likely(PyTuple_Check(kw))) { jpayne@68: Py_ssize_t kwsize; jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: kwsize = PyTuple_GET_SIZE(kw); jpayne@68: #else jpayne@68: kwsize = PyTuple_Size(kw); jpayne@68: if (kwsize < 0) return 0; jpayne@68: #endif jpayne@68: if (unlikely(kwsize == 0)) jpayne@68: return 1; jpayne@68: if (!kw_allowed) { jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: key = PyTuple_GET_ITEM(kw, 0); jpayne@68: #else jpayne@68: key = PyTuple_GetItem(kw, pos); jpayne@68: if (!key) return 0; jpayne@68: #endif jpayne@68: goto invalid_keyword; jpayne@68: } jpayne@68: #if PY_VERSION_HEX < 0x03090000 jpayne@68: for (pos = 0; pos < kwsize; pos++) { jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: key = PyTuple_GET_ITEM(kw, pos); jpayne@68: #else jpayne@68: key = PyTuple_GetItem(kw, pos); jpayne@68: if (!key) return 0; jpayne@68: #endif jpayne@68: if (unlikely(!PyUnicode_Check(key))) jpayne@68: goto invalid_keyword_type; jpayne@68: } jpayne@68: #endif jpayne@68: return 1; jpayne@68: } jpayne@68: while (PyDict_Next(kw, &pos, &key, 0)) { jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (unlikely(!PyString_Check(key))) jpayne@68: #endif jpayne@68: if (unlikely(!PyUnicode_Check(key))) jpayne@68: goto invalid_keyword_type; jpayne@68: } jpayne@68: if (!kw_allowed && unlikely(key)) jpayne@68: goto invalid_keyword; jpayne@68: return 1; jpayne@68: invalid_keyword_type: jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() keywords must be strings", function_name); jpayne@68: return 0; jpayne@68: #endif jpayne@68: invalid_keyword: jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() got an unexpected keyword argument '%.200s'", jpayne@68: function_name, PyString_AsString(key)); jpayne@68: #else jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%s() got an unexpected keyword argument '%U'", jpayne@68: function_name, key); jpayne@68: #endif jpayne@68: return 0; jpayne@68: } jpayne@68: jpayne@68: /* PyObjectCall2Args */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2) { jpayne@68: PyObject *args[3] = {NULL, arg1, arg2}; jpayne@68: return __Pyx_PyObject_FastCall(function, args+1, 2 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET); jpayne@68: } jpayne@68: jpayne@68: /* PyObjectCallOneArg */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { jpayne@68: PyObject *args[2] = {NULL, arg}; jpayne@68: return __Pyx_PyObject_FastCall(func, args+1, 1 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET); jpayne@68: } jpayne@68: jpayne@68: /* PyObjectGetMethod */ jpayne@68: static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method) { jpayne@68: PyObject *attr; jpayne@68: #if CYTHON_UNPACK_METHODS && CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_PYTYPE_LOOKUP jpayne@68: __Pyx_TypeName type_name; jpayne@68: PyTypeObject *tp = Py_TYPE(obj); jpayne@68: PyObject *descr; jpayne@68: descrgetfunc f = NULL; jpayne@68: PyObject **dictptr, *dict; jpayne@68: int meth_found = 0; jpayne@68: assert (*method == NULL); jpayne@68: if (unlikely(tp->tp_getattro != PyObject_GenericGetAttr)) { jpayne@68: attr = __Pyx_PyObject_GetAttrStr(obj, name); jpayne@68: goto try_unpack; jpayne@68: } jpayne@68: if (unlikely(tp->tp_dict == NULL) && unlikely(PyType_Ready(tp) < 0)) { jpayne@68: return 0; jpayne@68: } jpayne@68: descr = _PyType_Lookup(tp, name); jpayne@68: if (likely(descr != NULL)) { jpayne@68: Py_INCREF(descr); jpayne@68: #if defined(Py_TPFLAGS_METHOD_DESCRIPTOR) && Py_TPFLAGS_METHOD_DESCRIPTOR jpayne@68: if (__Pyx_PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_METHOD_DESCRIPTOR)) jpayne@68: #elif PY_MAJOR_VERSION >= 3 jpayne@68: #ifdef __Pyx_CyFunction_USED jpayne@68: if (likely(PyFunction_Check(descr) || __Pyx_IS_TYPE(descr, &PyMethodDescr_Type) || __Pyx_CyFunction_Check(descr))) jpayne@68: #else jpayne@68: if (likely(PyFunction_Check(descr) || __Pyx_IS_TYPE(descr, &PyMethodDescr_Type))) jpayne@68: #endif jpayne@68: #else jpayne@68: #ifdef __Pyx_CyFunction_USED jpayne@68: if (likely(PyFunction_Check(descr) || __Pyx_CyFunction_Check(descr))) jpayne@68: #else jpayne@68: if (likely(PyFunction_Check(descr))) jpayne@68: #endif jpayne@68: #endif jpayne@68: { jpayne@68: meth_found = 1; jpayne@68: } else { jpayne@68: f = Py_TYPE(descr)->tp_descr_get; jpayne@68: if (f != NULL && PyDescr_IsData(descr)) { jpayne@68: attr = f(descr, obj, (PyObject *)Py_TYPE(obj)); jpayne@68: Py_DECREF(descr); jpayne@68: goto try_unpack; jpayne@68: } jpayne@68: } jpayne@68: } jpayne@68: dictptr = _PyObject_GetDictPtr(obj); jpayne@68: if (dictptr != NULL && (dict = *dictptr) != NULL) { jpayne@68: Py_INCREF(dict); jpayne@68: attr = __Pyx_PyDict_GetItemStr(dict, name); jpayne@68: if (attr != NULL) { jpayne@68: Py_INCREF(attr); jpayne@68: Py_DECREF(dict); jpayne@68: Py_XDECREF(descr); jpayne@68: goto try_unpack; jpayne@68: } jpayne@68: Py_DECREF(dict); jpayne@68: } jpayne@68: if (meth_found) { jpayne@68: *method = descr; jpayne@68: return 1; jpayne@68: } jpayne@68: if (f != NULL) { jpayne@68: attr = f(descr, obj, (PyObject *)Py_TYPE(obj)); jpayne@68: Py_DECREF(descr); jpayne@68: goto try_unpack; jpayne@68: } jpayne@68: if (likely(descr != NULL)) { jpayne@68: *method = descr; jpayne@68: return 0; jpayne@68: } jpayne@68: type_name = __Pyx_PyType_GetName(tp); jpayne@68: PyErr_Format(PyExc_AttributeError, jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: "'" __Pyx_FMT_TYPENAME "' object has no attribute '%U'", jpayne@68: type_name, name); jpayne@68: #else jpayne@68: "'" __Pyx_FMT_TYPENAME "' object has no attribute '%.400s'", jpayne@68: type_name, PyString_AS_STRING(name)); jpayne@68: #endif jpayne@68: __Pyx_DECREF_TypeName(type_name); jpayne@68: return 0; jpayne@68: #else jpayne@68: attr = __Pyx_PyObject_GetAttrStr(obj, name); jpayne@68: goto try_unpack; jpayne@68: #endif jpayne@68: try_unpack: jpayne@68: #if CYTHON_UNPACK_METHODS jpayne@68: if (likely(attr) && PyMethod_Check(attr) && likely(PyMethod_GET_SELF(attr) == obj)) { jpayne@68: PyObject *function = PyMethod_GET_FUNCTION(attr); jpayne@68: Py_INCREF(function); jpayne@68: Py_DECREF(attr); jpayne@68: *method = function; jpayne@68: return 1; jpayne@68: } jpayne@68: #endif jpayne@68: *method = attr; jpayne@68: return 0; jpayne@68: } jpayne@68: jpayne@68: /* PyObjectCallMethod1 */ jpayne@68: #if !(CYTHON_VECTORCALL && __PYX_LIMITED_VERSION_HEX >= 0x030C00A2) jpayne@68: static PyObject* __Pyx__PyObject_CallMethod1(PyObject* method, PyObject* arg) { jpayne@68: PyObject *result = __Pyx_PyObject_CallOneArg(method, arg); jpayne@68: Py_DECREF(method); jpayne@68: return result; jpayne@68: } jpayne@68: #endif jpayne@68: static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg) { jpayne@68: #if CYTHON_VECTORCALL && __PYX_LIMITED_VERSION_HEX >= 0x030C00A2 jpayne@68: PyObject *args[2] = {obj, arg}; jpayne@68: (void) __Pyx_PyObject_GetMethod; jpayne@68: (void) __Pyx_PyObject_CallOneArg; jpayne@68: (void) __Pyx_PyObject_Call2Args; jpayne@68: return PyObject_VectorcallMethod(method_name, args, 2 | PY_VECTORCALL_ARGUMENTS_OFFSET, NULL); jpayne@68: #else jpayne@68: PyObject *method = NULL, *result; jpayne@68: int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method); jpayne@68: if (likely(is_method)) { jpayne@68: result = __Pyx_PyObject_Call2Args(method, obj, arg); jpayne@68: Py_DECREF(method); jpayne@68: return result; jpayne@68: } jpayne@68: if (unlikely(!method)) return NULL; jpayne@68: return __Pyx__PyObject_CallMethod1(method, arg); jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: /* StringJoin */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyBytes_Join(PyObject* sep, PyObject* values) { jpayne@68: (void) __Pyx_PyObject_CallMethod1; jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION < 3 jpayne@68: return _PyString_Join(sep, values); jpayne@68: #elif CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030d0000 jpayne@68: return _PyBytes_Join(sep, values); jpayne@68: #else jpayne@68: return __Pyx_PyObject_CallMethod1(sep, __pyx_n_s_join, values); jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: /* PyObjectCallNoArg */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) { jpayne@68: PyObject *arg[2] = {NULL, NULL}; jpayne@68: return __Pyx_PyObject_FastCall(func, arg + 1, 0 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET); jpayne@68: } jpayne@68: jpayne@68: /* ArgTypeTest */ jpayne@68: static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact) jpayne@68: { jpayne@68: __Pyx_TypeName type_name; jpayne@68: __Pyx_TypeName obj_type_name; jpayne@68: if (unlikely(!type)) { jpayne@68: PyErr_SetString(PyExc_SystemError, "Missing type object"); jpayne@68: return 0; jpayne@68: } jpayne@68: else if (exact) { jpayne@68: #if PY_MAJOR_VERSION == 2 jpayne@68: if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1; jpayne@68: #endif jpayne@68: } jpayne@68: else { jpayne@68: if (likely(__Pyx_TypeCheck(obj, type))) return 1; jpayne@68: } jpayne@68: type_name = __Pyx_PyType_GetName(type); jpayne@68: obj_type_name = __Pyx_PyType_GetName(Py_TYPE(obj)); jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "Argument '%.200s' has incorrect type (expected " __Pyx_FMT_TYPENAME jpayne@68: ", got " __Pyx_FMT_TYPENAME ")", name, type_name, obj_type_name); jpayne@68: __Pyx_DECREF_TypeName(type_name); jpayne@68: __Pyx_DECREF_TypeName(obj_type_name); jpayne@68: return 0; jpayne@68: } jpayne@68: jpayne@68: /* PyObjectSetAttrStr */ jpayne@68: #if CYTHON_USE_TYPE_SLOTS jpayne@68: static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value) { jpayne@68: PyTypeObject* tp = Py_TYPE(obj); jpayne@68: if (likely(tp->tp_setattro)) jpayne@68: return tp->tp_setattro(obj, attr_name, value); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(tp->tp_setattr)) jpayne@68: return tp->tp_setattr(obj, PyString_AS_STRING(attr_name), value); jpayne@68: #endif jpayne@68: return PyObject_SetAttr(obj, attr_name, value); jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* JoinPyUnicode */ jpayne@68: static PyObject* __Pyx_PyUnicode_Join(PyObject* value_tuple, Py_ssize_t value_count, Py_ssize_t result_ulength, jpayne@68: Py_UCS4 max_char) { jpayne@68: #if CYTHON_USE_UNICODE_INTERNALS && CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS jpayne@68: PyObject *result_uval; jpayne@68: int result_ukind, kind_shift; jpayne@68: Py_ssize_t i, char_pos; jpayne@68: void *result_udata; jpayne@68: CYTHON_MAYBE_UNUSED_VAR(max_char); jpayne@68: #if CYTHON_PEP393_ENABLED jpayne@68: result_uval = PyUnicode_New(result_ulength, max_char); jpayne@68: if (unlikely(!result_uval)) return NULL; jpayne@68: result_ukind = (max_char <= 255) ? PyUnicode_1BYTE_KIND : (max_char <= 65535) ? PyUnicode_2BYTE_KIND : PyUnicode_4BYTE_KIND; jpayne@68: kind_shift = (result_ukind == PyUnicode_4BYTE_KIND) ? 2 : result_ukind - 1; jpayne@68: result_udata = PyUnicode_DATA(result_uval); jpayne@68: #else jpayne@68: result_uval = PyUnicode_FromUnicode(NULL, result_ulength); jpayne@68: if (unlikely(!result_uval)) return NULL; jpayne@68: result_ukind = sizeof(Py_UNICODE); jpayne@68: kind_shift = (result_ukind == 4) ? 2 : result_ukind - 1; jpayne@68: result_udata = PyUnicode_AS_UNICODE(result_uval); jpayne@68: #endif jpayne@68: assert(kind_shift == 2 || kind_shift == 1 || kind_shift == 0); jpayne@68: char_pos = 0; jpayne@68: for (i=0; i < value_count; i++) { jpayne@68: int ukind; jpayne@68: Py_ssize_t ulength; jpayne@68: void *udata; jpayne@68: PyObject *uval = PyTuple_GET_ITEM(value_tuple, i); jpayne@68: if (unlikely(__Pyx_PyUnicode_READY(uval))) jpayne@68: goto bad; jpayne@68: ulength = __Pyx_PyUnicode_GET_LENGTH(uval); jpayne@68: if (unlikely(!ulength)) jpayne@68: continue; jpayne@68: if (unlikely((PY_SSIZE_T_MAX >> kind_shift) - ulength < char_pos)) jpayne@68: goto overflow; jpayne@68: ukind = __Pyx_PyUnicode_KIND(uval); jpayne@68: udata = __Pyx_PyUnicode_DATA(uval); jpayne@68: if (!CYTHON_PEP393_ENABLED || ukind == result_ukind) { jpayne@68: memcpy((char *)result_udata + (char_pos << kind_shift), udata, (size_t) (ulength << kind_shift)); jpayne@68: } else { jpayne@68: #if PY_VERSION_HEX >= 0x030d0000 jpayne@68: if (unlikely(PyUnicode_CopyCharacters(result_uval, char_pos, uval, 0, ulength) < 0)) goto bad; jpayne@68: #elif CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030300F0 || defined(_PyUnicode_FastCopyCharacters) jpayne@68: _PyUnicode_FastCopyCharacters(result_uval, char_pos, uval, 0, ulength); jpayne@68: #else jpayne@68: Py_ssize_t j; jpayne@68: for (j=0; j < ulength; j++) { jpayne@68: Py_UCS4 uchar = __Pyx_PyUnicode_READ(ukind, udata, j); jpayne@68: __Pyx_PyUnicode_WRITE(result_ukind, result_udata, char_pos+j, uchar); jpayne@68: } jpayne@68: #endif jpayne@68: } jpayne@68: char_pos += ulength; jpayne@68: } jpayne@68: return result_uval; jpayne@68: overflow: jpayne@68: PyErr_SetString(PyExc_OverflowError, "join() result is too long for a Python string"); jpayne@68: bad: jpayne@68: Py_DECREF(result_uval); jpayne@68: return NULL; jpayne@68: #else jpayne@68: CYTHON_UNUSED_VAR(max_char); jpayne@68: CYTHON_UNUSED_VAR(result_ulength); jpayne@68: CYTHON_UNUSED_VAR(value_count); jpayne@68: return PyUnicode_Join(__pyx_empty_unicode, value_tuple); jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: /* PyDictVersioning */ jpayne@68: #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS jpayne@68: static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj) { jpayne@68: PyObject *dict = Py_TYPE(obj)->tp_dict; jpayne@68: return likely(dict) ? __PYX_GET_DICT_VERSION(dict) : 0; jpayne@68: } jpayne@68: static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj) { jpayne@68: PyObject **dictptr = NULL; jpayne@68: Py_ssize_t offset = Py_TYPE(obj)->tp_dictoffset; jpayne@68: if (offset) { jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: dictptr = (likely(offset > 0)) ? (PyObject **) ((char *)obj + offset) : _PyObject_GetDictPtr(obj); jpayne@68: #else jpayne@68: dictptr = _PyObject_GetDictPtr(obj); jpayne@68: #endif jpayne@68: } jpayne@68: return (dictptr && *dictptr) ? __PYX_GET_DICT_VERSION(*dictptr) : 0; jpayne@68: } jpayne@68: static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version) { jpayne@68: PyObject *dict = Py_TYPE(obj)->tp_dict; jpayne@68: if (unlikely(!dict) || unlikely(tp_dict_version != __PYX_GET_DICT_VERSION(dict))) jpayne@68: return 0; jpayne@68: return obj_dict_version == __Pyx_get_object_dict_version(obj); jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* GetModuleGlobalName */ jpayne@68: #if CYTHON_USE_DICT_VERSIONS jpayne@68: static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value) jpayne@68: #else jpayne@68: static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name) jpayne@68: #endif jpayne@68: { jpayne@68: PyObject *result; jpayne@68: #if !CYTHON_AVOID_BORROWED_REFS jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && PY_VERSION_HEX < 0x030d0000 jpayne@68: result = _PyDict_GetItem_KnownHash(__pyx_d, name, ((PyASCIIObject *) name)->hash); jpayne@68: __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version) jpayne@68: if (likely(result)) { jpayne@68: return __Pyx_NewRef(result); jpayne@68: } else if (unlikely(PyErr_Occurred())) { jpayne@68: return NULL; jpayne@68: } jpayne@68: #elif CYTHON_COMPILING_IN_LIMITED_API jpayne@68: if (unlikely(!__pyx_m)) { jpayne@68: return NULL; jpayne@68: } jpayne@68: result = PyObject_GetAttr(__pyx_m, name); jpayne@68: if (likely(result)) { jpayne@68: return result; jpayne@68: } jpayne@68: #else jpayne@68: result = PyDict_GetItem(__pyx_d, name); jpayne@68: __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version) jpayne@68: if (likely(result)) { jpayne@68: return __Pyx_NewRef(result); jpayne@68: } jpayne@68: #endif jpayne@68: #else jpayne@68: result = PyObject_GetItem(__pyx_d, name); jpayne@68: __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version) jpayne@68: if (likely(result)) { jpayne@68: return __Pyx_NewRef(result); jpayne@68: } jpayne@68: PyErr_Clear(); jpayne@68: #endif jpayne@68: return __Pyx_GetBuiltinName(name); jpayne@68: } jpayne@68: jpayne@68: /* GetItemInt */ jpayne@68: static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { jpayne@68: PyObject *r; jpayne@68: if (unlikely(!j)) return NULL; jpayne@68: r = PyObject_GetItem(o, j); jpayne@68: Py_DECREF(j); jpayne@68: return r; jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, jpayne@68: CYTHON_NCP_UNUSED int wraparound, jpayne@68: CYTHON_NCP_UNUSED int boundscheck) { jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS jpayne@68: Py_ssize_t wrapped_i = i; jpayne@68: if (wraparound & unlikely(i < 0)) { jpayne@68: wrapped_i += PyList_GET_SIZE(o); jpayne@68: } jpayne@68: if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyList_GET_SIZE(o)))) { jpayne@68: PyObject *r = PyList_GET_ITEM(o, wrapped_i); jpayne@68: Py_INCREF(r); jpayne@68: return r; jpayne@68: } jpayne@68: return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); jpayne@68: #else jpayne@68: return PySequence_GetItem(o, i); jpayne@68: #endif jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, jpayne@68: CYTHON_NCP_UNUSED int wraparound, jpayne@68: CYTHON_NCP_UNUSED int boundscheck) { jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS jpayne@68: Py_ssize_t wrapped_i = i; jpayne@68: if (wraparound & unlikely(i < 0)) { jpayne@68: wrapped_i += PyTuple_GET_SIZE(o); jpayne@68: } jpayne@68: if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyTuple_GET_SIZE(o)))) { jpayne@68: PyObject *r = PyTuple_GET_ITEM(o, wrapped_i); jpayne@68: Py_INCREF(r); jpayne@68: return r; jpayne@68: } jpayne@68: return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); jpayne@68: #else jpayne@68: return PySequence_GetItem(o, i); jpayne@68: #endif jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list, jpayne@68: CYTHON_NCP_UNUSED int wraparound, jpayne@68: CYTHON_NCP_UNUSED int boundscheck) { jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS jpayne@68: if (is_list || PyList_CheckExact(o)) { jpayne@68: Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o); jpayne@68: if ((!boundscheck) || (likely(__Pyx_is_valid_index(n, PyList_GET_SIZE(o))))) { jpayne@68: PyObject *r = PyList_GET_ITEM(o, n); jpayne@68: Py_INCREF(r); jpayne@68: return r; jpayne@68: } jpayne@68: } jpayne@68: else if (PyTuple_CheckExact(o)) { jpayne@68: Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o); jpayne@68: if ((!boundscheck) || likely(__Pyx_is_valid_index(n, PyTuple_GET_SIZE(o)))) { jpayne@68: PyObject *r = PyTuple_GET_ITEM(o, n); jpayne@68: Py_INCREF(r); jpayne@68: return r; jpayne@68: } jpayne@68: } else { jpayne@68: PyMappingMethods *mm = Py_TYPE(o)->tp_as_mapping; jpayne@68: PySequenceMethods *sm = Py_TYPE(o)->tp_as_sequence; jpayne@68: if (mm && mm->mp_subscript) { jpayne@68: PyObject *r, *key = PyInt_FromSsize_t(i); jpayne@68: if (unlikely(!key)) return NULL; jpayne@68: r = mm->mp_subscript(o, key); jpayne@68: Py_DECREF(key); jpayne@68: return r; jpayne@68: } jpayne@68: if (likely(sm && sm->sq_item)) { jpayne@68: if (wraparound && unlikely(i < 0) && likely(sm->sq_length)) { jpayne@68: Py_ssize_t l = sm->sq_length(o); jpayne@68: if (likely(l >= 0)) { jpayne@68: i += l; jpayne@68: } else { jpayne@68: if (!PyErr_ExceptionMatches(PyExc_OverflowError)) jpayne@68: return NULL; jpayne@68: PyErr_Clear(); jpayne@68: } jpayne@68: } jpayne@68: return sm->sq_item(o, i); jpayne@68: } jpayne@68: } jpayne@68: #else jpayne@68: if (is_list || !PyMapping_Check(o)) { jpayne@68: return PySequence_GetItem(o, i); jpayne@68: } jpayne@68: #endif jpayne@68: return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); jpayne@68: } jpayne@68: jpayne@68: /* ObjectGetItem */ jpayne@68: #if CYTHON_USE_TYPE_SLOTS jpayne@68: static PyObject *__Pyx_PyObject_GetIndex(PyObject *obj, PyObject *index) { jpayne@68: PyObject *runerr = NULL; jpayne@68: Py_ssize_t key_value; jpayne@68: key_value = __Pyx_PyIndex_AsSsize_t(index); jpayne@68: if (likely(key_value != -1 || !(runerr = PyErr_Occurred()))) { jpayne@68: return __Pyx_GetItemInt_Fast(obj, key_value, 0, 1, 1); jpayne@68: } jpayne@68: if (PyErr_GivenExceptionMatches(runerr, PyExc_OverflowError)) { jpayne@68: __Pyx_TypeName index_type_name = __Pyx_PyType_GetName(Py_TYPE(index)); jpayne@68: PyErr_Clear(); jpayne@68: PyErr_Format(PyExc_IndexError, jpayne@68: "cannot fit '" __Pyx_FMT_TYPENAME "' into an index-sized integer", index_type_name); jpayne@68: __Pyx_DECREF_TypeName(index_type_name); jpayne@68: } jpayne@68: return NULL; jpayne@68: } jpayne@68: static PyObject *__Pyx_PyObject_GetItem_Slow(PyObject *obj, PyObject *key) { jpayne@68: __Pyx_TypeName obj_type_name; jpayne@68: if (likely(PyType_Check(obj))) { jpayne@68: PyObject *meth = __Pyx_PyObject_GetAttrStrNoError(obj, __pyx_n_s_class_getitem); jpayne@68: if (!meth) { jpayne@68: PyErr_Clear(); jpayne@68: } else { jpayne@68: PyObject *result = __Pyx_PyObject_CallOneArg(meth, key); jpayne@68: Py_DECREF(meth); jpayne@68: return result; jpayne@68: } jpayne@68: } jpayne@68: obj_type_name = __Pyx_PyType_GetName(Py_TYPE(obj)); jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "'" __Pyx_FMT_TYPENAME "' object is not subscriptable", obj_type_name); jpayne@68: __Pyx_DECREF_TypeName(obj_type_name); jpayne@68: return NULL; jpayne@68: } jpayne@68: static PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject *key) { jpayne@68: PyTypeObject *tp = Py_TYPE(obj); jpayne@68: PyMappingMethods *mm = tp->tp_as_mapping; jpayne@68: PySequenceMethods *sm = tp->tp_as_sequence; jpayne@68: if (likely(mm && mm->mp_subscript)) { jpayne@68: return mm->mp_subscript(obj, key); jpayne@68: } jpayne@68: if (likely(sm && sm->sq_item)) { jpayne@68: return __Pyx_PyObject_GetIndex(obj, key); jpayne@68: } jpayne@68: return __Pyx_PyObject_GetItem_Slow(obj, key); jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* GetException */ jpayne@68: #if CYTHON_FAST_THREAD_STATE jpayne@68: static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) jpayne@68: #else jpayne@68: static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) jpayne@68: #endif jpayne@68: { jpayne@68: PyObject *local_type = NULL, *local_value, *local_tb = NULL; jpayne@68: #if CYTHON_FAST_THREAD_STATE jpayne@68: PyObject *tmp_type, *tmp_value, *tmp_tb; jpayne@68: #if PY_VERSION_HEX >= 0x030C00A6 jpayne@68: local_value = tstate->current_exception; jpayne@68: tstate->current_exception = 0; jpayne@68: if (likely(local_value)) { jpayne@68: local_type = (PyObject*) Py_TYPE(local_value); jpayne@68: Py_INCREF(local_type); jpayne@68: local_tb = PyException_GetTraceback(local_value); jpayne@68: } jpayne@68: #else jpayne@68: local_type = tstate->curexc_type; jpayne@68: local_value = tstate->curexc_value; jpayne@68: local_tb = tstate->curexc_traceback; jpayne@68: tstate->curexc_type = 0; jpayne@68: tstate->curexc_value = 0; jpayne@68: tstate->curexc_traceback = 0; jpayne@68: #endif jpayne@68: #else jpayne@68: PyErr_Fetch(&local_type, &local_value, &local_tb); jpayne@68: #endif jpayne@68: PyErr_NormalizeException(&local_type, &local_value, &local_tb); jpayne@68: #if CYTHON_FAST_THREAD_STATE && PY_VERSION_HEX >= 0x030C00A6 jpayne@68: if (unlikely(tstate->current_exception)) jpayne@68: #elif CYTHON_FAST_THREAD_STATE jpayne@68: if (unlikely(tstate->curexc_type)) jpayne@68: #else jpayne@68: if (unlikely(PyErr_Occurred())) jpayne@68: #endif jpayne@68: goto bad; jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: if (local_tb) { jpayne@68: if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0)) jpayne@68: goto bad; jpayne@68: } jpayne@68: #endif jpayne@68: Py_XINCREF(local_tb); jpayne@68: Py_XINCREF(local_type); jpayne@68: Py_XINCREF(local_value); jpayne@68: *type = local_type; jpayne@68: *value = local_value; jpayne@68: *tb = local_tb; jpayne@68: #if CYTHON_FAST_THREAD_STATE jpayne@68: #if CYTHON_USE_EXC_INFO_STACK jpayne@68: { jpayne@68: _PyErr_StackItem *exc_info = tstate->exc_info; jpayne@68: #if PY_VERSION_HEX >= 0x030B00a4 jpayne@68: tmp_value = exc_info->exc_value; jpayne@68: exc_info->exc_value = local_value; jpayne@68: tmp_type = NULL; jpayne@68: tmp_tb = NULL; jpayne@68: Py_XDECREF(local_type); jpayne@68: Py_XDECREF(local_tb); jpayne@68: #else jpayne@68: tmp_type = exc_info->exc_type; jpayne@68: tmp_value = exc_info->exc_value; jpayne@68: tmp_tb = exc_info->exc_traceback; jpayne@68: exc_info->exc_type = local_type; jpayne@68: exc_info->exc_value = local_value; jpayne@68: exc_info->exc_traceback = local_tb; jpayne@68: #endif jpayne@68: } jpayne@68: #else jpayne@68: tmp_type = tstate->exc_type; jpayne@68: tmp_value = tstate->exc_value; jpayne@68: tmp_tb = tstate->exc_traceback; jpayne@68: tstate->exc_type = local_type; jpayne@68: tstate->exc_value = local_value; jpayne@68: tstate->exc_traceback = local_tb; jpayne@68: #endif jpayne@68: Py_XDECREF(tmp_type); jpayne@68: Py_XDECREF(tmp_value); jpayne@68: Py_XDECREF(tmp_tb); jpayne@68: #else jpayne@68: PyErr_SetExcInfo(local_type, local_value, local_tb); jpayne@68: #endif jpayne@68: return 0; jpayne@68: bad: jpayne@68: *type = 0; jpayne@68: *value = 0; jpayne@68: *tb = 0; jpayne@68: Py_XDECREF(local_type); jpayne@68: Py_XDECREF(local_value); jpayne@68: Py_XDECREF(local_tb); jpayne@68: return -1; jpayne@68: } jpayne@68: jpayne@68: /* SwapException */ jpayne@68: #if CYTHON_FAST_THREAD_STATE jpayne@68: static CYTHON_INLINE void __Pyx__ExceptionSwap(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { jpayne@68: PyObject *tmp_type, *tmp_value, *tmp_tb; jpayne@68: #if CYTHON_USE_EXC_INFO_STACK && PY_VERSION_HEX >= 0x030B00a4 jpayne@68: _PyErr_StackItem *exc_info = tstate->exc_info; jpayne@68: tmp_value = exc_info->exc_value; jpayne@68: exc_info->exc_value = *value; jpayne@68: if (tmp_value == NULL || tmp_value == Py_None) { jpayne@68: Py_XDECREF(tmp_value); jpayne@68: tmp_value = NULL; jpayne@68: tmp_type = NULL; jpayne@68: tmp_tb = NULL; jpayne@68: } else { jpayne@68: tmp_type = (PyObject*) Py_TYPE(tmp_value); jpayne@68: Py_INCREF(tmp_type); jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: tmp_tb = ((PyBaseExceptionObject*) tmp_value)->traceback; jpayne@68: Py_XINCREF(tmp_tb); jpayne@68: #else jpayne@68: tmp_tb = PyException_GetTraceback(tmp_value); jpayne@68: #endif jpayne@68: } jpayne@68: #elif CYTHON_USE_EXC_INFO_STACK jpayne@68: _PyErr_StackItem *exc_info = tstate->exc_info; jpayne@68: tmp_type = exc_info->exc_type; jpayne@68: tmp_value = exc_info->exc_value; jpayne@68: tmp_tb = exc_info->exc_traceback; jpayne@68: exc_info->exc_type = *type; jpayne@68: exc_info->exc_value = *value; jpayne@68: exc_info->exc_traceback = *tb; jpayne@68: #else jpayne@68: tmp_type = tstate->exc_type; jpayne@68: tmp_value = tstate->exc_value; jpayne@68: tmp_tb = tstate->exc_traceback; jpayne@68: tstate->exc_type = *type; jpayne@68: tstate->exc_value = *value; jpayne@68: tstate->exc_traceback = *tb; jpayne@68: #endif jpayne@68: *type = tmp_type; jpayne@68: *value = tmp_value; jpayne@68: *tb = tmp_tb; jpayne@68: } jpayne@68: #else jpayne@68: static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb) { jpayne@68: PyObject *tmp_type, *tmp_value, *tmp_tb; jpayne@68: PyErr_GetExcInfo(&tmp_type, &tmp_value, &tmp_tb); jpayne@68: PyErr_SetExcInfo(*type, *value, *tb); jpayne@68: *type = tmp_type; jpayne@68: *value = tmp_value; jpayne@68: *tb = tmp_tb; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* GetTopmostException */ jpayne@68: #if CYTHON_USE_EXC_INFO_STACK && CYTHON_FAST_THREAD_STATE jpayne@68: static _PyErr_StackItem * jpayne@68: __Pyx_PyErr_GetTopmostException(PyThreadState *tstate) jpayne@68: { jpayne@68: _PyErr_StackItem *exc_info = tstate->exc_info; jpayne@68: while ((exc_info->exc_value == NULL || exc_info->exc_value == Py_None) && jpayne@68: exc_info->previous_item != NULL) jpayne@68: { jpayne@68: exc_info = exc_info->previous_item; jpayne@68: } jpayne@68: return exc_info; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* SaveResetException */ jpayne@68: #if CYTHON_FAST_THREAD_STATE jpayne@68: static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { jpayne@68: #if CYTHON_USE_EXC_INFO_STACK && PY_VERSION_HEX >= 0x030B00a4 jpayne@68: _PyErr_StackItem *exc_info = __Pyx_PyErr_GetTopmostException(tstate); jpayne@68: PyObject *exc_value = exc_info->exc_value; jpayne@68: if (exc_value == NULL || exc_value == Py_None) { jpayne@68: *value = NULL; jpayne@68: *type = NULL; jpayne@68: *tb = NULL; jpayne@68: } else { jpayne@68: *value = exc_value; jpayne@68: Py_INCREF(*value); jpayne@68: *type = (PyObject*) Py_TYPE(exc_value); jpayne@68: Py_INCREF(*type); jpayne@68: *tb = PyException_GetTraceback(exc_value); jpayne@68: } jpayne@68: #elif CYTHON_USE_EXC_INFO_STACK jpayne@68: _PyErr_StackItem *exc_info = __Pyx_PyErr_GetTopmostException(tstate); jpayne@68: *type = exc_info->exc_type; jpayne@68: *value = exc_info->exc_value; jpayne@68: *tb = exc_info->exc_traceback; jpayne@68: Py_XINCREF(*type); jpayne@68: Py_XINCREF(*value); jpayne@68: Py_XINCREF(*tb); jpayne@68: #else jpayne@68: *type = tstate->exc_type; jpayne@68: *value = tstate->exc_value; jpayne@68: *tb = tstate->exc_traceback; jpayne@68: Py_XINCREF(*type); jpayne@68: Py_XINCREF(*value); jpayne@68: Py_XINCREF(*tb); jpayne@68: #endif jpayne@68: } jpayne@68: static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { jpayne@68: #if CYTHON_USE_EXC_INFO_STACK && PY_VERSION_HEX >= 0x030B00a4 jpayne@68: _PyErr_StackItem *exc_info = tstate->exc_info; jpayne@68: PyObject *tmp_value = exc_info->exc_value; jpayne@68: exc_info->exc_value = value; jpayne@68: Py_XDECREF(tmp_value); jpayne@68: Py_XDECREF(type); jpayne@68: Py_XDECREF(tb); jpayne@68: #else jpayne@68: PyObject *tmp_type, *tmp_value, *tmp_tb; jpayne@68: #if CYTHON_USE_EXC_INFO_STACK jpayne@68: _PyErr_StackItem *exc_info = tstate->exc_info; jpayne@68: tmp_type = exc_info->exc_type; jpayne@68: tmp_value = exc_info->exc_value; jpayne@68: tmp_tb = exc_info->exc_traceback; jpayne@68: exc_info->exc_type = type; jpayne@68: exc_info->exc_value = value; jpayne@68: exc_info->exc_traceback = tb; jpayne@68: #else jpayne@68: tmp_type = tstate->exc_type; jpayne@68: tmp_value = tstate->exc_value; jpayne@68: tmp_tb = tstate->exc_traceback; jpayne@68: tstate->exc_type = type; jpayne@68: tstate->exc_value = value; jpayne@68: tstate->exc_traceback = tb; jpayne@68: #endif jpayne@68: Py_XDECREF(tmp_type); jpayne@68: Py_XDECREF(tmp_value); jpayne@68: Py_XDECREF(tmp_tb); jpayne@68: #endif jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyIntBinop */ jpayne@68: #if !CYTHON_COMPILING_IN_PYPY jpayne@68: static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check) { jpayne@68: CYTHON_MAYBE_UNUSED_VAR(intval); jpayne@68: CYTHON_MAYBE_UNUSED_VAR(inplace); jpayne@68: CYTHON_UNUSED_VAR(zerodivision_check); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(PyInt_CheckExact(op1))) { jpayne@68: const long b = intval; jpayne@68: long x; jpayne@68: long a = PyInt_AS_LONG(op1); jpayne@68: jpayne@68: x = (long)((unsigned long)a - (unsigned long)b); jpayne@68: if (likely((x^a) >= 0 || (x^~b) >= 0)) jpayne@68: return PyInt_FromLong(x); jpayne@68: return PyLong_Type.tp_as_number->nb_subtract(op1, op2); jpayne@68: } jpayne@68: #endif jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (likely(PyLong_CheckExact(op1))) { jpayne@68: const long b = intval; jpayne@68: long a, x; jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: const PY_LONG_LONG llb = intval; jpayne@68: PY_LONG_LONG lla, llx; jpayne@68: #endif jpayne@68: if (unlikely(__Pyx_PyLong_IsZero(op1))) { jpayne@68: return PyLong_FromLong(-intval); jpayne@68: } jpayne@68: if (likely(__Pyx_PyLong_IsCompact(op1))) { jpayne@68: a = __Pyx_PyLong_CompactValue(op1); jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(op1); jpayne@68: const Py_ssize_t size = __Pyx_PyLong_SignedDigitCount(op1); jpayne@68: switch (size) { jpayne@68: case -2: jpayne@68: if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { jpayne@68: a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); jpayne@68: break; jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { jpayne@68: lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); jpayne@68: goto long_long; jpayne@68: #endif jpayne@68: } jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 2: jpayne@68: if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { jpayne@68: a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); jpayne@68: break; jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { jpayne@68: lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); jpayne@68: goto long_long; jpayne@68: #endif jpayne@68: } jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case -3: jpayne@68: if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { jpayne@68: a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); jpayne@68: break; jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { jpayne@68: lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); jpayne@68: goto long_long; jpayne@68: #endif jpayne@68: } jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 3: jpayne@68: if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { jpayne@68: a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); jpayne@68: break; jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { jpayne@68: lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); jpayne@68: goto long_long; jpayne@68: #endif jpayne@68: } jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case -4: jpayne@68: if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { jpayne@68: a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); jpayne@68: break; jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { jpayne@68: lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); jpayne@68: goto long_long; jpayne@68: #endif jpayne@68: } jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: case 4: jpayne@68: if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { jpayne@68: a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); jpayne@68: break; jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { jpayne@68: lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); jpayne@68: goto long_long; jpayne@68: #endif jpayne@68: } jpayne@68: CYTHON_FALLTHROUGH; jpayne@68: default: return PyLong_Type.tp_as_number->nb_subtract(op1, op2); jpayne@68: } jpayne@68: } jpayne@68: x = a - b; jpayne@68: return PyLong_FromLong(x); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: long_long: jpayne@68: llx = lla - llb; jpayne@68: return PyLong_FromLongLong(llx); jpayne@68: #endif jpayne@68: jpayne@68: jpayne@68: } jpayne@68: #endif jpayne@68: if (PyFloat_CheckExact(op1)) { jpayne@68: const long b = intval; jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: double a = __pyx_PyFloat_AsDouble(op1); jpayne@68: #else jpayne@68: double a = PyFloat_AS_DOUBLE(op1); jpayne@68: #endif jpayne@68: double result; jpayne@68: jpayne@68: PyFPE_START_PROTECT("subtract", return NULL) jpayne@68: result = ((double)a) - (double)b; jpayne@68: PyFPE_END_PROTECT(result) jpayne@68: return PyFloat_FromDouble(result); jpayne@68: } jpayne@68: return (inplace ? PyNumber_InPlaceSubtract : PyNumber_Subtract)(op1, op2); jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* RaiseTooManyValuesToUnpack */ jpayne@68: static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { jpayne@68: PyErr_Format(PyExc_ValueError, jpayne@68: "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); jpayne@68: } jpayne@68: jpayne@68: /* RaiseNeedMoreValuesToUnpack */ jpayne@68: static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { jpayne@68: PyErr_Format(PyExc_ValueError, jpayne@68: "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", jpayne@68: index, (index == 1) ? "" : "s"); jpayne@68: } jpayne@68: jpayne@68: /* IterFinish */ jpayne@68: static CYTHON_INLINE int __Pyx_IterFinish(void) { jpayne@68: PyObject* exc_type; jpayne@68: __Pyx_PyThreadState_declare jpayne@68: __Pyx_PyThreadState_assign jpayne@68: exc_type = __Pyx_PyErr_CurrentExceptionType(); jpayne@68: if (unlikely(exc_type)) { jpayne@68: if (unlikely(!__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) jpayne@68: return -1; jpayne@68: __Pyx_PyErr_Clear(); jpayne@68: return 0; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: jpayne@68: /* UnpackItemEndCheck */ jpayne@68: static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { jpayne@68: if (unlikely(retval)) { jpayne@68: Py_DECREF(retval); jpayne@68: __Pyx_RaiseTooManyValuesError(expected); jpayne@68: return -1; jpayne@68: } jpayne@68: return __Pyx_IterFinish(); jpayne@68: } jpayne@68: jpayne@68: /* PyIntCompare */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_NeObjC(PyObject *op1, PyObject *op2, long intval, long inplace) { jpayne@68: CYTHON_MAYBE_UNUSED_VAR(intval); jpayne@68: CYTHON_UNUSED_VAR(inplace); jpayne@68: if (op1 == op2) { jpayne@68: Py_RETURN_FALSE; jpayne@68: } jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(PyInt_CheckExact(op1))) { jpayne@68: const long b = intval; jpayne@68: long a = PyInt_AS_LONG(op1); jpayne@68: if (a != b) Py_RETURN_TRUE; else Py_RETURN_FALSE; jpayne@68: } jpayne@68: #endif jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (likely(PyLong_CheckExact(op1))) { jpayne@68: int unequal; jpayne@68: unsigned long uintval; jpayne@68: Py_ssize_t size = __Pyx_PyLong_DigitCount(op1); jpayne@68: const digit* digits = __Pyx_PyLong_Digits(op1); jpayne@68: if (intval == 0) { jpayne@68: if (__Pyx_PyLong_IsZero(op1) != 1) Py_RETURN_TRUE; else Py_RETURN_FALSE; jpayne@68: } else if (intval < 0) { jpayne@68: if (__Pyx_PyLong_IsNonNeg(op1)) jpayne@68: Py_RETURN_TRUE; jpayne@68: intval = -intval; jpayne@68: } else { jpayne@68: if (__Pyx_PyLong_IsNeg(op1)) jpayne@68: Py_RETURN_TRUE; jpayne@68: } jpayne@68: uintval = (unsigned long) intval; jpayne@68: #if PyLong_SHIFT * 4 < SIZEOF_LONG*8 jpayne@68: if (uintval >> (PyLong_SHIFT * 4)) { jpayne@68: unequal = (size != 5) || (digits[0] != (uintval & (unsigned long) PyLong_MASK)) jpayne@68: | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[4] != ((uintval >> (4 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)); jpayne@68: } else jpayne@68: #endif jpayne@68: #if PyLong_SHIFT * 3 < SIZEOF_LONG*8 jpayne@68: if (uintval >> (PyLong_SHIFT * 3)) { jpayne@68: unequal = (size != 4) || (digits[0] != (uintval & (unsigned long) PyLong_MASK)) jpayne@68: | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)); jpayne@68: } else jpayne@68: #endif jpayne@68: #if PyLong_SHIFT * 2 < SIZEOF_LONG*8 jpayne@68: if (uintval >> (PyLong_SHIFT * 2)) { jpayne@68: unequal = (size != 3) || (digits[0] != (uintval & (unsigned long) PyLong_MASK)) jpayne@68: | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)); jpayne@68: } else jpayne@68: #endif jpayne@68: #if PyLong_SHIFT * 1 < SIZEOF_LONG*8 jpayne@68: if (uintval >> (PyLong_SHIFT * 1)) { jpayne@68: unequal = (size != 2) || (digits[0] != (uintval & (unsigned long) PyLong_MASK)) jpayne@68: | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)); jpayne@68: } else jpayne@68: #endif jpayne@68: unequal = (size != 1) || (((unsigned long) digits[0]) != (uintval & (unsigned long) PyLong_MASK)); jpayne@68: if (unequal != 0) Py_RETURN_TRUE; else Py_RETURN_FALSE; jpayne@68: } jpayne@68: #endif jpayne@68: if (PyFloat_CheckExact(op1)) { jpayne@68: const long b = intval; jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: double a = __pyx_PyFloat_AsDouble(op1); jpayne@68: #else jpayne@68: double a = PyFloat_AS_DOUBLE(op1); jpayne@68: #endif jpayne@68: if ((double)a != (double)b) Py_RETURN_TRUE; else Py_RETURN_FALSE; jpayne@68: } jpayne@68: return ( jpayne@68: PyObject_RichCompare(op1, op2, Py_NE)); jpayne@68: } jpayne@68: jpayne@68: /* FixUpExtensionType */ jpayne@68: #if CYTHON_USE_TYPE_SPECS jpayne@68: static int __Pyx_fix_up_extension_type_from_spec(PyType_Spec *spec, PyTypeObject *type) { jpayne@68: #if PY_VERSION_HEX > 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: CYTHON_UNUSED_VAR(spec); jpayne@68: CYTHON_UNUSED_VAR(type); jpayne@68: #else jpayne@68: const PyType_Slot *slot = spec->slots; jpayne@68: while (slot && slot->slot && slot->slot != Py_tp_members) jpayne@68: slot++; jpayne@68: if (slot && slot->slot == Py_tp_members) { jpayne@68: int changed = 0; jpayne@68: #if !(PY_VERSION_HEX <= 0x030900b1 && CYTHON_COMPILING_IN_CPYTHON) jpayne@68: const jpayne@68: #endif jpayne@68: PyMemberDef *memb = (PyMemberDef*) slot->pfunc; jpayne@68: while (memb && memb->name) { jpayne@68: if (memb->name[0] == '_' && memb->name[1] == '_') { jpayne@68: #if PY_VERSION_HEX < 0x030900b1 jpayne@68: if (strcmp(memb->name, "__weaklistoffset__") == 0) { jpayne@68: assert(memb->type == T_PYSSIZET); jpayne@68: assert(memb->flags == READONLY); jpayne@68: type->tp_weaklistoffset = memb->offset; jpayne@68: changed = 1; jpayne@68: } jpayne@68: else if (strcmp(memb->name, "__dictoffset__") == 0) { jpayne@68: assert(memb->type == T_PYSSIZET); jpayne@68: assert(memb->flags == READONLY); jpayne@68: type->tp_dictoffset = memb->offset; jpayne@68: changed = 1; jpayne@68: } jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: else if (strcmp(memb->name, "__vectorcalloffset__") == 0) { jpayne@68: assert(memb->type == T_PYSSIZET); jpayne@68: assert(memb->flags == READONLY); jpayne@68: #if PY_VERSION_HEX >= 0x030800b4 jpayne@68: type->tp_vectorcall_offset = memb->offset; jpayne@68: #else jpayne@68: type->tp_print = (printfunc) memb->offset; jpayne@68: #endif jpayne@68: changed = 1; jpayne@68: } jpayne@68: #endif jpayne@68: #else jpayne@68: if ((0)); jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX <= 0x030900b1 && CYTHON_COMPILING_IN_CPYTHON jpayne@68: else if (strcmp(memb->name, "__module__") == 0) { jpayne@68: PyObject *descr; jpayne@68: assert(memb->type == T_OBJECT); jpayne@68: assert(memb->flags == 0 || memb->flags == READONLY); jpayne@68: descr = PyDescr_NewMember(type, memb); jpayne@68: if (unlikely(!descr)) jpayne@68: return -1; jpayne@68: if (unlikely(PyDict_SetItem(type->tp_dict, PyDescr_NAME(descr), descr) < 0)) { jpayne@68: Py_DECREF(descr); jpayne@68: return -1; jpayne@68: } jpayne@68: Py_DECREF(descr); jpayne@68: changed = 1; jpayne@68: } jpayne@68: #endif jpayne@68: } jpayne@68: memb++; jpayne@68: } jpayne@68: if (changed) jpayne@68: PyType_Modified(type); jpayne@68: } jpayne@68: #endif jpayne@68: return 0; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyObjectCallMethod0 */ jpayne@68: static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name) { jpayne@68: PyObject *method = NULL, *result = NULL; jpayne@68: int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method); jpayne@68: if (likely(is_method)) { jpayne@68: result = __Pyx_PyObject_CallOneArg(method, obj); jpayne@68: Py_DECREF(method); jpayne@68: return result; jpayne@68: } jpayne@68: if (unlikely(!method)) goto bad; jpayne@68: result = __Pyx_PyObject_CallNoArg(method); jpayne@68: Py_DECREF(method); jpayne@68: bad: jpayne@68: return result; jpayne@68: } jpayne@68: jpayne@68: /* ValidateBasesTuple */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON || CYTHON_COMPILING_IN_LIMITED_API || CYTHON_USE_TYPE_SPECS jpayne@68: static int __Pyx_validate_bases_tuple(const char *type_name, Py_ssize_t dictoffset, PyObject *bases) { jpayne@68: Py_ssize_t i, n; jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: n = PyTuple_GET_SIZE(bases); jpayne@68: #else jpayne@68: n = PyTuple_Size(bases); jpayne@68: if (n < 0) return -1; jpayne@68: #endif jpayne@68: for (i = 1; i < n; i++) jpayne@68: { jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: PyObject *b0 = PySequence_GetItem(bases, i); jpayne@68: if (!b0) return -1; jpayne@68: #elif CYTHON_ASSUME_SAFE_MACROS jpayne@68: PyObject *b0 = PyTuple_GET_ITEM(bases, i); jpayne@68: #else jpayne@68: PyObject *b0 = PyTuple_GetItem(bases, i); jpayne@68: if (!b0) return -1; jpayne@68: #endif jpayne@68: PyTypeObject *b; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (PyClass_Check(b0)) jpayne@68: { jpayne@68: PyErr_Format(PyExc_TypeError, "base class '%.200s' is an old-style class", jpayne@68: PyString_AS_STRING(((PyClassObject*)b0)->cl_name)); jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: Py_DECREF(b0); jpayne@68: #endif jpayne@68: return -1; jpayne@68: } jpayne@68: #endif jpayne@68: b = (PyTypeObject*) b0; jpayne@68: if (!__Pyx_PyType_HasFeature(b, Py_TPFLAGS_HEAPTYPE)) jpayne@68: { jpayne@68: __Pyx_TypeName b_name = __Pyx_PyType_GetName(b); jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "base class '" __Pyx_FMT_TYPENAME "' is not a heap type", b_name); jpayne@68: __Pyx_DECREF_TypeName(b_name); jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: Py_DECREF(b0); jpayne@68: #endif jpayne@68: return -1; jpayne@68: } jpayne@68: if (dictoffset == 0) jpayne@68: { jpayne@68: Py_ssize_t b_dictoffset = 0; jpayne@68: #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY jpayne@68: b_dictoffset = b->tp_dictoffset; jpayne@68: #else jpayne@68: PyObject *py_b_dictoffset = PyObject_GetAttrString((PyObject*)b, "__dictoffset__"); jpayne@68: if (!py_b_dictoffset) goto dictoffset_return; jpayne@68: b_dictoffset = PyLong_AsSsize_t(py_b_dictoffset); jpayne@68: Py_DECREF(py_b_dictoffset); jpayne@68: if (b_dictoffset == -1 && PyErr_Occurred()) goto dictoffset_return; jpayne@68: #endif jpayne@68: if (b_dictoffset) { jpayne@68: { jpayne@68: __Pyx_TypeName b_name = __Pyx_PyType_GetName(b); jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "extension type '%.200s' has no __dict__ slot, " jpayne@68: "but base type '" __Pyx_FMT_TYPENAME "' has: " jpayne@68: "either add 'cdef dict __dict__' to the extension type " jpayne@68: "or add '__slots__ = [...]' to the base type", jpayne@68: type_name, b_name); jpayne@68: __Pyx_DECREF_TypeName(b_name); jpayne@68: } jpayne@68: #if !(CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY) jpayne@68: dictoffset_return: jpayne@68: #endif jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: Py_DECREF(b0); jpayne@68: #endif jpayne@68: return -1; jpayne@68: } jpayne@68: } jpayne@68: #if CYTHON_AVOID_BORROWED_REFS jpayne@68: Py_DECREF(b0); jpayne@68: #endif jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyType_Ready */ jpayne@68: static int __Pyx_PyType_Ready(PyTypeObject *t) { jpayne@68: #if CYTHON_USE_TYPE_SPECS || !(CYTHON_COMPILING_IN_CPYTHON || CYTHON_COMPILING_IN_LIMITED_API) || defined(PYSTON_MAJOR_VERSION) jpayne@68: (void)__Pyx_PyObject_CallMethod0; jpayne@68: #if CYTHON_USE_TYPE_SPECS jpayne@68: (void)__Pyx_validate_bases_tuple; jpayne@68: #endif jpayne@68: return PyType_Ready(t); jpayne@68: #else jpayne@68: int r; jpayne@68: PyObject *bases = __Pyx_PyType_GetSlot(t, tp_bases, PyObject*); jpayne@68: if (bases && unlikely(__Pyx_validate_bases_tuple(t->tp_name, t->tp_dictoffset, bases) == -1)) jpayne@68: return -1; jpayne@68: #if PY_VERSION_HEX >= 0x03050000 && !defined(PYSTON_MAJOR_VERSION) jpayne@68: { jpayne@68: int gc_was_enabled; jpayne@68: #if PY_VERSION_HEX >= 0x030A00b1 jpayne@68: gc_was_enabled = PyGC_Disable(); jpayne@68: (void)__Pyx_PyObject_CallMethod0; jpayne@68: #else jpayne@68: PyObject *ret, *py_status; jpayne@68: PyObject *gc = NULL; jpayne@68: #if PY_VERSION_HEX >= 0x030700a1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM+0 >= 0x07030400) jpayne@68: gc = PyImport_GetModule(__pyx_kp_u_gc); jpayne@68: #endif jpayne@68: if (unlikely(!gc)) gc = PyImport_Import(__pyx_kp_u_gc); jpayne@68: if (unlikely(!gc)) return -1; jpayne@68: py_status = __Pyx_PyObject_CallMethod0(gc, __pyx_kp_u_isenabled); jpayne@68: if (unlikely(!py_status)) { jpayne@68: Py_DECREF(gc); jpayne@68: return -1; jpayne@68: } jpayne@68: gc_was_enabled = __Pyx_PyObject_IsTrue(py_status); jpayne@68: Py_DECREF(py_status); jpayne@68: if (gc_was_enabled > 0) { jpayne@68: ret = __Pyx_PyObject_CallMethod0(gc, __pyx_kp_u_disable); jpayne@68: if (unlikely(!ret)) { jpayne@68: Py_DECREF(gc); jpayne@68: return -1; jpayne@68: } jpayne@68: Py_DECREF(ret); jpayne@68: } else if (unlikely(gc_was_enabled == -1)) { jpayne@68: Py_DECREF(gc); jpayne@68: return -1; jpayne@68: } jpayne@68: #endif jpayne@68: t->tp_flags |= Py_TPFLAGS_HEAPTYPE; jpayne@68: #if PY_VERSION_HEX >= 0x030A0000 jpayne@68: t->tp_flags |= Py_TPFLAGS_IMMUTABLETYPE; jpayne@68: #endif jpayne@68: #else jpayne@68: (void)__Pyx_PyObject_CallMethod0; jpayne@68: #endif jpayne@68: r = PyType_Ready(t); jpayne@68: #if PY_VERSION_HEX >= 0x03050000 && !defined(PYSTON_MAJOR_VERSION) jpayne@68: t->tp_flags &= ~Py_TPFLAGS_HEAPTYPE; jpayne@68: #if PY_VERSION_HEX >= 0x030A00b1 jpayne@68: if (gc_was_enabled) jpayne@68: PyGC_Enable(); jpayne@68: #else jpayne@68: if (gc_was_enabled) { jpayne@68: PyObject *tp, *v, *tb; jpayne@68: PyErr_Fetch(&tp, &v, &tb); jpayne@68: ret = __Pyx_PyObject_CallMethod0(gc, __pyx_kp_u_enable); jpayne@68: if (likely(ret || r == -1)) { jpayne@68: Py_XDECREF(ret); jpayne@68: PyErr_Restore(tp, v, tb); jpayne@68: } else { jpayne@68: Py_XDECREF(tp); jpayne@68: Py_XDECREF(v); jpayne@68: Py_XDECREF(tb); jpayne@68: r = -1; jpayne@68: } jpayne@68: } jpayne@68: Py_DECREF(gc); jpayne@68: #endif jpayne@68: } jpayne@68: #endif jpayne@68: return r; jpayne@68: #endif jpayne@68: } jpayne@68: jpayne@68: /* PyObject_GenericGetAttrNoDict */ jpayne@68: #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 jpayne@68: static PyObject *__Pyx_RaiseGenericGetAttributeError(PyTypeObject *tp, PyObject *attr_name) { jpayne@68: __Pyx_TypeName type_name = __Pyx_PyType_GetName(tp); jpayne@68: PyErr_Format(PyExc_AttributeError, jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: "'" __Pyx_FMT_TYPENAME "' object has no attribute '%U'", jpayne@68: type_name, attr_name); jpayne@68: #else jpayne@68: "'" __Pyx_FMT_TYPENAME "' object has no attribute '%.400s'", jpayne@68: type_name, PyString_AS_STRING(attr_name)); jpayne@68: #endif jpayne@68: __Pyx_DECREF_TypeName(type_name); jpayne@68: return NULL; jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name) { jpayne@68: PyObject *descr; jpayne@68: PyTypeObject *tp = Py_TYPE(obj); jpayne@68: if (unlikely(!PyString_Check(attr_name))) { jpayne@68: return PyObject_GenericGetAttr(obj, attr_name); jpayne@68: } jpayne@68: assert(!tp->tp_dictoffset); jpayne@68: descr = _PyType_Lookup(tp, attr_name); jpayne@68: if (unlikely(!descr)) { jpayne@68: return __Pyx_RaiseGenericGetAttributeError(tp, attr_name); jpayne@68: } jpayne@68: Py_INCREF(descr); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_HAVE_CLASS))) jpayne@68: #endif jpayne@68: { jpayne@68: descrgetfunc f = Py_TYPE(descr)->tp_descr_get; jpayne@68: if (unlikely(f)) { jpayne@68: PyObject *res = f(descr, obj, (PyObject *)tp); jpayne@68: Py_DECREF(descr); jpayne@68: return res; jpayne@68: } jpayne@68: } jpayne@68: return descr; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyObject_GenericGetAttr */ jpayne@68: #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 jpayne@68: static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name) { jpayne@68: if (unlikely(Py_TYPE(obj)->tp_dictoffset)) { jpayne@68: return PyObject_GenericGetAttr(obj, attr_name); jpayne@68: } jpayne@68: return __Pyx_PyObject_GenericGetAttrNoDict(obj, attr_name); jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* SetVTable */ jpayne@68: static int __Pyx_SetVtable(PyTypeObject *type, void *vtable) { jpayne@68: PyObject *ob = PyCapsule_New(vtable, 0, 0); jpayne@68: if (unlikely(!ob)) jpayne@68: goto bad; jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: if (unlikely(PyObject_SetAttr((PyObject *) type, __pyx_n_s_pyx_vtable, ob) < 0)) jpayne@68: #else jpayne@68: if (unlikely(PyDict_SetItem(type->tp_dict, __pyx_n_s_pyx_vtable, ob) < 0)) jpayne@68: #endif jpayne@68: goto bad; jpayne@68: Py_DECREF(ob); jpayne@68: return 0; jpayne@68: bad: jpayne@68: Py_XDECREF(ob); jpayne@68: return -1; jpayne@68: } jpayne@68: jpayne@68: /* GetVTable */ jpayne@68: static void* __Pyx_GetVtable(PyTypeObject *type) { jpayne@68: void* ptr; jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: PyObject *ob = PyObject_GetAttr((PyObject *)type, __pyx_n_s_pyx_vtable); jpayne@68: #else jpayne@68: PyObject *ob = PyObject_GetItem(type->tp_dict, __pyx_n_s_pyx_vtable); jpayne@68: #endif jpayne@68: if (!ob) jpayne@68: goto bad; jpayne@68: ptr = PyCapsule_GetPointer(ob, 0); jpayne@68: if (!ptr && !PyErr_Occurred()) jpayne@68: PyErr_SetString(PyExc_RuntimeError, "invalid vtable found for imported type"); jpayne@68: Py_DECREF(ob); jpayne@68: return ptr; jpayne@68: bad: jpayne@68: Py_XDECREF(ob); jpayne@68: return NULL; jpayne@68: } jpayne@68: jpayne@68: /* MergeVTables */ jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static int __Pyx_MergeVtables(PyTypeObject *type) { jpayne@68: int i; jpayne@68: void** base_vtables; jpayne@68: __Pyx_TypeName tp_base_name; jpayne@68: __Pyx_TypeName base_name; jpayne@68: void* unknown = (void*)-1; jpayne@68: PyObject* bases = type->tp_bases; jpayne@68: int base_depth = 0; jpayne@68: { jpayne@68: PyTypeObject* base = type->tp_base; jpayne@68: while (base) { jpayne@68: base_depth += 1; jpayne@68: base = base->tp_base; jpayne@68: } jpayne@68: } jpayne@68: base_vtables = (void**) malloc(sizeof(void*) * (size_t)(base_depth + 1)); jpayne@68: base_vtables[0] = unknown; jpayne@68: for (i = 1; i < PyTuple_GET_SIZE(bases); i++) { jpayne@68: void* base_vtable = __Pyx_GetVtable(((PyTypeObject*)PyTuple_GET_ITEM(bases, i))); jpayne@68: if (base_vtable != NULL) { jpayne@68: int j; jpayne@68: PyTypeObject* base = type->tp_base; jpayne@68: for (j = 0; j < base_depth; j++) { jpayne@68: if (base_vtables[j] == unknown) { jpayne@68: base_vtables[j] = __Pyx_GetVtable(base); jpayne@68: base_vtables[j + 1] = unknown; jpayne@68: } jpayne@68: if (base_vtables[j] == base_vtable) { jpayne@68: break; jpayne@68: } else if (base_vtables[j] == NULL) { jpayne@68: goto bad; jpayne@68: } jpayne@68: base = base->tp_base; jpayne@68: } jpayne@68: } jpayne@68: } jpayne@68: PyErr_Clear(); jpayne@68: free(base_vtables); jpayne@68: return 0; jpayne@68: bad: jpayne@68: tp_base_name = __Pyx_PyType_GetName(type->tp_base); jpayne@68: base_name = __Pyx_PyType_GetName((PyTypeObject*)PyTuple_GET_ITEM(bases, i)); jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "multiple bases have vtable conflict: '" __Pyx_FMT_TYPENAME "' and '" __Pyx_FMT_TYPENAME "'", tp_base_name, base_name); jpayne@68: __Pyx_DECREF_TypeName(tp_base_name); jpayne@68: __Pyx_DECREF_TypeName(base_name); jpayne@68: free(base_vtables); jpayne@68: return -1; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* SetupReduce */ jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static int __Pyx_setup_reduce_is_named(PyObject* meth, PyObject* name) { jpayne@68: int ret; jpayne@68: PyObject *name_attr; jpayne@68: name_attr = __Pyx_PyObject_GetAttrStrNoError(meth, __pyx_n_s_name_2); jpayne@68: if (likely(name_attr)) { jpayne@68: ret = PyObject_RichCompareBool(name_attr, name, Py_EQ); jpayne@68: } else { jpayne@68: ret = -1; jpayne@68: } jpayne@68: if (unlikely(ret < 0)) { jpayne@68: PyErr_Clear(); jpayne@68: ret = 0; jpayne@68: } jpayne@68: Py_XDECREF(name_attr); jpayne@68: return ret; jpayne@68: } jpayne@68: static int __Pyx_setup_reduce(PyObject* type_obj) { jpayne@68: int ret = 0; jpayne@68: PyObject *object_reduce = NULL; jpayne@68: PyObject *object_getstate = NULL; jpayne@68: PyObject *object_reduce_ex = NULL; jpayne@68: PyObject *reduce = NULL; jpayne@68: PyObject *reduce_ex = NULL; jpayne@68: PyObject *reduce_cython = NULL; jpayne@68: PyObject *setstate = NULL; jpayne@68: PyObject *setstate_cython = NULL; jpayne@68: PyObject *getstate = NULL; jpayne@68: #if CYTHON_USE_PYTYPE_LOOKUP jpayne@68: getstate = _PyType_Lookup((PyTypeObject*)type_obj, __pyx_n_s_getstate); jpayne@68: #else jpayne@68: getstate = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_getstate); jpayne@68: if (!getstate && PyErr_Occurred()) { jpayne@68: goto __PYX_BAD; jpayne@68: } jpayne@68: #endif jpayne@68: if (getstate) { jpayne@68: #if CYTHON_USE_PYTYPE_LOOKUP jpayne@68: object_getstate = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_getstate); jpayne@68: #else jpayne@68: object_getstate = __Pyx_PyObject_GetAttrStrNoError((PyObject*)&PyBaseObject_Type, __pyx_n_s_getstate); jpayne@68: if (!object_getstate && PyErr_Occurred()) { jpayne@68: goto __PYX_BAD; jpayne@68: } jpayne@68: #endif jpayne@68: if (object_getstate != getstate) { jpayne@68: goto __PYX_GOOD; jpayne@68: } jpayne@68: } jpayne@68: #if CYTHON_USE_PYTYPE_LOOKUP jpayne@68: object_reduce_ex = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD; jpayne@68: #else jpayne@68: object_reduce_ex = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD; jpayne@68: #endif jpayne@68: reduce_ex = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_ex); if (unlikely(!reduce_ex)) goto __PYX_BAD; jpayne@68: if (reduce_ex == object_reduce_ex) { jpayne@68: #if CYTHON_USE_PYTYPE_LOOKUP jpayne@68: object_reduce = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto __PYX_BAD; jpayne@68: #else jpayne@68: object_reduce = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto __PYX_BAD; jpayne@68: #endif jpayne@68: reduce = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce); if (unlikely(!reduce)) goto __PYX_BAD; jpayne@68: if (reduce == object_reduce || __Pyx_setup_reduce_is_named(reduce, __pyx_n_s_reduce_cython)) { jpayne@68: reduce_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_reduce_cython); jpayne@68: if (likely(reduce_cython)) { jpayne@68: ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce, reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD; jpayne@68: ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD; jpayne@68: } else if (reduce == object_reduce || PyErr_Occurred()) { jpayne@68: goto __PYX_BAD; jpayne@68: } jpayne@68: setstate = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_setstate); jpayne@68: if (!setstate) PyErr_Clear(); jpayne@68: if (!setstate || __Pyx_setup_reduce_is_named(setstate, __pyx_n_s_setstate_cython)) { jpayne@68: setstate_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_setstate_cython); jpayne@68: if (likely(setstate_cython)) { jpayne@68: ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate, setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD; jpayne@68: ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD; jpayne@68: } else if (!setstate || PyErr_Occurred()) { jpayne@68: goto __PYX_BAD; jpayne@68: } jpayne@68: } jpayne@68: PyType_Modified((PyTypeObject*)type_obj); jpayne@68: } jpayne@68: } jpayne@68: goto __PYX_GOOD; jpayne@68: __PYX_BAD: jpayne@68: if (!PyErr_Occurred()) { jpayne@68: __Pyx_TypeName type_obj_name = jpayne@68: __Pyx_PyType_GetName((PyTypeObject*)type_obj); jpayne@68: PyErr_Format(PyExc_RuntimeError, jpayne@68: "Unable to initialize pickling for " __Pyx_FMT_TYPENAME, type_obj_name); jpayne@68: __Pyx_DECREF_TypeName(type_obj_name); jpayne@68: } jpayne@68: ret = -1; jpayne@68: __PYX_GOOD: jpayne@68: #if !CYTHON_USE_PYTYPE_LOOKUP jpayne@68: Py_XDECREF(object_reduce); jpayne@68: Py_XDECREF(object_reduce_ex); jpayne@68: Py_XDECREF(object_getstate); jpayne@68: Py_XDECREF(getstate); jpayne@68: #endif jpayne@68: Py_XDECREF(reduce); jpayne@68: Py_XDECREF(reduce_ex); jpayne@68: Py_XDECREF(reduce_cython); jpayne@68: Py_XDECREF(setstate); jpayne@68: Py_XDECREF(setstate_cython); jpayne@68: return ret; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* TypeImport */ jpayne@68: #ifndef __PYX_HAVE_RT_ImportType_3_0_11 jpayne@68: #define __PYX_HAVE_RT_ImportType_3_0_11 jpayne@68: static PyTypeObject *__Pyx_ImportType_3_0_11(PyObject *module, const char *module_name, const char *class_name, jpayne@68: size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_0_11 check_size) jpayne@68: { jpayne@68: PyObject *result = 0; jpayne@68: char warning[200]; jpayne@68: Py_ssize_t basicsize; jpayne@68: Py_ssize_t itemsize; jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: PyObject *py_basicsize; jpayne@68: PyObject *py_itemsize; jpayne@68: #endif jpayne@68: result = PyObject_GetAttrString(module, class_name); jpayne@68: if (!result) jpayne@68: goto bad; jpayne@68: if (!PyType_Check(result)) { jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s.%.200s is not a type object", jpayne@68: module_name, class_name); jpayne@68: goto bad; jpayne@68: } jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: basicsize = ((PyTypeObject *)result)->tp_basicsize; jpayne@68: itemsize = ((PyTypeObject *)result)->tp_itemsize; jpayne@68: #else jpayne@68: py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); jpayne@68: if (!py_basicsize) jpayne@68: goto bad; jpayne@68: basicsize = PyLong_AsSsize_t(py_basicsize); jpayne@68: Py_DECREF(py_basicsize); jpayne@68: py_basicsize = 0; jpayne@68: if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) jpayne@68: goto bad; jpayne@68: py_itemsize = PyObject_GetAttrString(result, "__itemsize__"); jpayne@68: if (!py_itemsize) jpayne@68: goto bad; jpayne@68: itemsize = PyLong_AsSsize_t(py_itemsize); jpayne@68: Py_DECREF(py_itemsize); jpayne@68: py_itemsize = 0; jpayne@68: if (itemsize == (Py_ssize_t)-1 && PyErr_Occurred()) jpayne@68: goto bad; jpayne@68: #endif jpayne@68: if (itemsize) { jpayne@68: if (size % alignment) { jpayne@68: alignment = size % alignment; jpayne@68: } jpayne@68: if (itemsize < (Py_ssize_t)alignment) jpayne@68: itemsize = (Py_ssize_t)alignment; jpayne@68: } jpayne@68: if ((size_t)(basicsize + itemsize) < size) { jpayne@68: PyErr_Format(PyExc_ValueError, jpayne@68: "%.200s.%.200s size changed, may indicate binary incompatibility. " jpayne@68: "Expected %zd from C header, got %zd from PyObject", jpayne@68: module_name, class_name, size, basicsize+itemsize); jpayne@68: goto bad; jpayne@68: } jpayne@68: if (check_size == __Pyx_ImportType_CheckSize_Error_3_0_11 && jpayne@68: ((size_t)basicsize > size || (size_t)(basicsize + itemsize) < size)) { jpayne@68: PyErr_Format(PyExc_ValueError, jpayne@68: "%.200s.%.200s size changed, may indicate binary incompatibility. " jpayne@68: "Expected %zd from C header, got %zd-%zd from PyObject", jpayne@68: module_name, class_name, size, basicsize, basicsize+itemsize); jpayne@68: goto bad; jpayne@68: } jpayne@68: else if (check_size == __Pyx_ImportType_CheckSize_Warn_3_0_11 && (size_t)basicsize > size) { jpayne@68: PyOS_snprintf(warning, sizeof(warning), jpayne@68: "%s.%s size changed, may indicate binary incompatibility. " jpayne@68: "Expected %zd from C header, got %zd from PyObject", jpayne@68: module_name, class_name, size, basicsize); jpayne@68: if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; jpayne@68: } jpayne@68: return (PyTypeObject *)result; jpayne@68: bad: jpayne@68: Py_XDECREF(result); jpayne@68: return NULL; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* Import */ jpayne@68: static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { jpayne@68: PyObject *module = 0; jpayne@68: PyObject *empty_dict = 0; jpayne@68: PyObject *empty_list = 0; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: PyObject *py_import; jpayne@68: py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); jpayne@68: if (unlikely(!py_import)) jpayne@68: goto bad; jpayne@68: if (!from_list) { jpayne@68: empty_list = PyList_New(0); jpayne@68: if (unlikely(!empty_list)) jpayne@68: goto bad; jpayne@68: from_list = empty_list; jpayne@68: } jpayne@68: #endif jpayne@68: empty_dict = PyDict_New(); jpayne@68: if (unlikely(!empty_dict)) jpayne@68: goto bad; jpayne@68: { jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: if (level == -1) { jpayne@68: if (strchr(__Pyx_MODULE_NAME, '.') != NULL) { jpayne@68: module = PyImport_ImportModuleLevelObject( jpayne@68: name, __pyx_d, empty_dict, from_list, 1); jpayne@68: if (unlikely(!module)) { jpayne@68: if (unlikely(!PyErr_ExceptionMatches(PyExc_ImportError))) jpayne@68: goto bad; jpayne@68: PyErr_Clear(); jpayne@68: } jpayne@68: } jpayne@68: level = 0; jpayne@68: } jpayne@68: #endif jpayne@68: if (!module) { jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: PyObject *py_level = PyInt_FromLong(level); jpayne@68: if (unlikely(!py_level)) jpayne@68: goto bad; jpayne@68: module = PyObject_CallFunctionObjArgs(py_import, jpayne@68: name, __pyx_d, empty_dict, from_list, py_level, (PyObject *)NULL); jpayne@68: Py_DECREF(py_level); jpayne@68: #else jpayne@68: module = PyImport_ImportModuleLevelObject( jpayne@68: name, __pyx_d, empty_dict, from_list, level); jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: bad: jpayne@68: Py_XDECREF(empty_dict); jpayne@68: Py_XDECREF(empty_list); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: Py_XDECREF(py_import); jpayne@68: #endif jpayne@68: return module; jpayne@68: } jpayne@68: jpayne@68: /* ImportDottedModule */ jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: static PyObject *__Pyx__ImportDottedModule_Error(PyObject *name, PyObject *parts_tuple, Py_ssize_t count) { jpayne@68: PyObject *partial_name = NULL, *slice = NULL, *sep = NULL; jpayne@68: if (unlikely(PyErr_Occurred())) { jpayne@68: PyErr_Clear(); jpayne@68: } jpayne@68: if (likely(PyTuple_GET_SIZE(parts_tuple) == count)) { jpayne@68: partial_name = name; jpayne@68: } else { jpayne@68: slice = PySequence_GetSlice(parts_tuple, 0, count); jpayne@68: if (unlikely(!slice)) jpayne@68: goto bad; jpayne@68: sep = PyUnicode_FromStringAndSize(".", 1); jpayne@68: if (unlikely(!sep)) jpayne@68: goto bad; jpayne@68: partial_name = PyUnicode_Join(sep, slice); jpayne@68: } jpayne@68: PyErr_Format( jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: PyExc_ImportError, jpayne@68: "No module named '%s'", PyString_AS_STRING(partial_name)); jpayne@68: #else jpayne@68: #if PY_VERSION_HEX >= 0x030600B1 jpayne@68: PyExc_ModuleNotFoundError, jpayne@68: #else jpayne@68: PyExc_ImportError, jpayne@68: #endif jpayne@68: "No module named '%U'", partial_name); jpayne@68: #endif jpayne@68: bad: jpayne@68: Py_XDECREF(sep); jpayne@68: Py_XDECREF(slice); jpayne@68: Py_XDECREF(partial_name); jpayne@68: return NULL; jpayne@68: } jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: static PyObject *__Pyx__ImportDottedModule_Lookup(PyObject *name) { jpayne@68: PyObject *imported_module; jpayne@68: #if PY_VERSION_HEX < 0x030700A1 || (CYTHON_COMPILING_IN_PYPY && PYPY_VERSION_NUM < 0x07030400) jpayne@68: PyObject *modules = PyImport_GetModuleDict(); jpayne@68: if (unlikely(!modules)) jpayne@68: return NULL; jpayne@68: imported_module = __Pyx_PyDict_GetItemStr(modules, name); jpayne@68: Py_XINCREF(imported_module); jpayne@68: #else jpayne@68: imported_module = PyImport_GetModule(name); jpayne@68: #endif jpayne@68: return imported_module; jpayne@68: } jpayne@68: #endif jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: static PyObject *__Pyx_ImportDottedModule_WalkParts(PyObject *module, PyObject *name, PyObject *parts_tuple) { jpayne@68: Py_ssize_t i, nparts; jpayne@68: nparts = PyTuple_GET_SIZE(parts_tuple); jpayne@68: for (i=1; i < nparts && module; i++) { jpayne@68: PyObject *part, *submodule; jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS jpayne@68: part = PyTuple_GET_ITEM(parts_tuple, i); jpayne@68: #else jpayne@68: part = PySequence_ITEM(parts_tuple, i); jpayne@68: #endif jpayne@68: submodule = __Pyx_PyObject_GetAttrStrNoError(module, part); jpayne@68: #if !(CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS) jpayne@68: Py_DECREF(part); jpayne@68: #endif jpayne@68: Py_DECREF(module); jpayne@68: module = submodule; jpayne@68: } jpayne@68: if (unlikely(!module)) { jpayne@68: return __Pyx__ImportDottedModule_Error(name, parts_tuple, i); jpayne@68: } jpayne@68: return module; jpayne@68: } jpayne@68: #endif jpayne@68: static PyObject *__Pyx__ImportDottedModule(PyObject *name, PyObject *parts_tuple) { jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: PyObject *module, *from_list, *star = __pyx_n_s__58; jpayne@68: CYTHON_UNUSED_VAR(parts_tuple); jpayne@68: from_list = PyList_New(1); jpayne@68: if (unlikely(!from_list)) jpayne@68: return NULL; jpayne@68: Py_INCREF(star); jpayne@68: PyList_SET_ITEM(from_list, 0, star); jpayne@68: module = __Pyx_Import(name, from_list, 0); jpayne@68: Py_DECREF(from_list); jpayne@68: return module; jpayne@68: #else jpayne@68: PyObject *imported_module; jpayne@68: PyObject *module = __Pyx_Import(name, NULL, 0); jpayne@68: if (!parts_tuple || unlikely(!module)) jpayne@68: return module; jpayne@68: imported_module = __Pyx__ImportDottedModule_Lookup(name); jpayne@68: if (likely(imported_module)) { jpayne@68: Py_DECREF(module); jpayne@68: return imported_module; jpayne@68: } jpayne@68: PyErr_Clear(); jpayne@68: return __Pyx_ImportDottedModule_WalkParts(module, name, parts_tuple); jpayne@68: #endif jpayne@68: } jpayne@68: static PyObject *__Pyx_ImportDottedModule(PyObject *name, PyObject *parts_tuple) { jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030400B1 jpayne@68: PyObject *module = __Pyx__ImportDottedModule_Lookup(name); jpayne@68: if (likely(module)) { jpayne@68: PyObject *spec = __Pyx_PyObject_GetAttrStrNoError(module, __pyx_n_s_spec); jpayne@68: if (likely(spec)) { jpayne@68: PyObject *unsafe = __Pyx_PyObject_GetAttrStrNoError(spec, __pyx_n_s_initializing); jpayne@68: if (likely(!unsafe || !__Pyx_PyObject_IsTrue(unsafe))) { jpayne@68: Py_DECREF(spec); jpayne@68: spec = NULL; jpayne@68: } jpayne@68: Py_XDECREF(unsafe); jpayne@68: } jpayne@68: if (likely(!spec)) { jpayne@68: PyErr_Clear(); jpayne@68: return module; jpayne@68: } jpayne@68: Py_DECREF(spec); jpayne@68: Py_DECREF(module); jpayne@68: } else if (PyErr_Occurred()) { jpayne@68: PyErr_Clear(); jpayne@68: } jpayne@68: #endif jpayne@68: return __Pyx__ImportDottedModule(name, parts_tuple); jpayne@68: } jpayne@68: jpayne@68: /* ImportFrom */ jpayne@68: static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { jpayne@68: PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); jpayne@68: if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { jpayne@68: const char* module_name_str = 0; jpayne@68: PyObject* module_name = 0; jpayne@68: PyObject* module_dot = 0; jpayne@68: PyObject* full_name = 0; jpayne@68: PyErr_Clear(); jpayne@68: module_name_str = PyModule_GetName(module); jpayne@68: if (unlikely(!module_name_str)) { goto modbad; } jpayne@68: module_name = PyUnicode_FromString(module_name_str); jpayne@68: if (unlikely(!module_name)) { goto modbad; } jpayne@68: module_dot = PyUnicode_Concat(module_name, __pyx_kp_u__59); jpayne@68: if (unlikely(!module_dot)) { goto modbad; } jpayne@68: full_name = PyUnicode_Concat(module_dot, name); jpayne@68: if (unlikely(!full_name)) { goto modbad; } jpayne@68: #if PY_VERSION_HEX < 0x030700A1 || (CYTHON_COMPILING_IN_PYPY && PYPY_VERSION_NUM < 0x07030400) jpayne@68: { jpayne@68: PyObject *modules = PyImport_GetModuleDict(); jpayne@68: if (unlikely(!modules)) jpayne@68: goto modbad; jpayne@68: value = PyObject_GetItem(modules, full_name); jpayne@68: } jpayne@68: #else jpayne@68: value = PyImport_GetModule(full_name); jpayne@68: #endif jpayne@68: modbad: jpayne@68: Py_XDECREF(full_name); jpayne@68: Py_XDECREF(module_dot); jpayne@68: Py_XDECREF(module_name); jpayne@68: } jpayne@68: if (unlikely(!value)) { jpayne@68: PyErr_Format(PyExc_ImportError, jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: "cannot import name %.230s", PyString_AS_STRING(name)); jpayne@68: #else jpayne@68: "cannot import name %S", name); jpayne@68: #endif jpayne@68: } jpayne@68: return value; jpayne@68: } jpayne@68: jpayne@68: /* FetchSharedCythonModule */ jpayne@68: static PyObject *__Pyx_FetchSharedCythonABIModule(void) { jpayne@68: return __Pyx_PyImport_AddModuleRef((char*) __PYX_ABI_MODULE_NAME); jpayne@68: } jpayne@68: jpayne@68: /* FetchCommonType */ jpayne@68: static int __Pyx_VerifyCachedType(PyObject *cached_type, jpayne@68: const char *name, jpayne@68: Py_ssize_t basicsize, jpayne@68: Py_ssize_t expected_basicsize) { jpayne@68: if (!PyType_Check(cached_type)) { jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "Shared Cython type %.200s is not a type object", name); jpayne@68: return -1; jpayne@68: } jpayne@68: if (basicsize != expected_basicsize) { jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "Shared Cython type %.200s has the wrong size, try recompiling", jpayne@68: name); jpayne@68: return -1; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: #if !CYTHON_USE_TYPE_SPECS jpayne@68: static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type) { jpayne@68: PyObject* abi_module; jpayne@68: const char* object_name; jpayne@68: PyTypeObject *cached_type = NULL; jpayne@68: abi_module = __Pyx_FetchSharedCythonABIModule(); jpayne@68: if (!abi_module) return NULL; jpayne@68: object_name = strrchr(type->tp_name, '.'); jpayne@68: object_name = object_name ? object_name+1 : type->tp_name; jpayne@68: cached_type = (PyTypeObject*) PyObject_GetAttrString(abi_module, object_name); jpayne@68: if (cached_type) { jpayne@68: if (__Pyx_VerifyCachedType( jpayne@68: (PyObject *)cached_type, jpayne@68: object_name, jpayne@68: cached_type->tp_basicsize, jpayne@68: type->tp_basicsize) < 0) { jpayne@68: goto bad; jpayne@68: } jpayne@68: goto done; jpayne@68: } jpayne@68: if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad; jpayne@68: PyErr_Clear(); jpayne@68: if (PyType_Ready(type) < 0) goto bad; jpayne@68: if (PyObject_SetAttrString(abi_module, object_name, (PyObject *)type) < 0) jpayne@68: goto bad; jpayne@68: Py_INCREF(type); jpayne@68: cached_type = type; jpayne@68: done: jpayne@68: Py_DECREF(abi_module); jpayne@68: return cached_type; jpayne@68: bad: jpayne@68: Py_XDECREF(cached_type); jpayne@68: cached_type = NULL; jpayne@68: goto done; jpayne@68: } jpayne@68: #else jpayne@68: static PyTypeObject *__Pyx_FetchCommonTypeFromSpec(PyObject *module, PyType_Spec *spec, PyObject *bases) { jpayne@68: PyObject *abi_module, *cached_type = NULL; jpayne@68: const char* object_name = strrchr(spec->name, '.'); jpayne@68: object_name = object_name ? object_name+1 : spec->name; jpayne@68: abi_module = __Pyx_FetchSharedCythonABIModule(); jpayne@68: if (!abi_module) return NULL; jpayne@68: cached_type = PyObject_GetAttrString(abi_module, object_name); jpayne@68: if (cached_type) { jpayne@68: Py_ssize_t basicsize; jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: PyObject *py_basicsize; jpayne@68: py_basicsize = PyObject_GetAttrString(cached_type, "__basicsize__"); jpayne@68: if (unlikely(!py_basicsize)) goto bad; jpayne@68: basicsize = PyLong_AsSsize_t(py_basicsize); jpayne@68: Py_DECREF(py_basicsize); jpayne@68: py_basicsize = 0; jpayne@68: if (unlikely(basicsize == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad; jpayne@68: #else jpayne@68: basicsize = likely(PyType_Check(cached_type)) ? ((PyTypeObject*) cached_type)->tp_basicsize : -1; jpayne@68: #endif jpayne@68: if (__Pyx_VerifyCachedType( jpayne@68: cached_type, jpayne@68: object_name, jpayne@68: basicsize, jpayne@68: spec->basicsize) < 0) { jpayne@68: goto bad; jpayne@68: } jpayne@68: goto done; jpayne@68: } jpayne@68: if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad; jpayne@68: PyErr_Clear(); jpayne@68: CYTHON_UNUSED_VAR(module); jpayne@68: cached_type = __Pyx_PyType_FromModuleAndSpec(abi_module, spec, bases); jpayne@68: if (unlikely(!cached_type)) goto bad; jpayne@68: if (unlikely(__Pyx_fix_up_extension_type_from_spec(spec, (PyTypeObject *) cached_type) < 0)) goto bad; jpayne@68: if (PyObject_SetAttrString(abi_module, object_name, cached_type) < 0) goto bad; jpayne@68: done: jpayne@68: Py_DECREF(abi_module); jpayne@68: assert(cached_type == NULL || PyType_Check(cached_type)); jpayne@68: return (PyTypeObject *) cached_type; jpayne@68: bad: jpayne@68: Py_XDECREF(cached_type); jpayne@68: cached_type = NULL; jpayne@68: goto done; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* PyVectorcallFastCallDict */ jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: static PyObject *__Pyx_PyVectorcall_FastCallDict_kw(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw) jpayne@68: { jpayne@68: PyObject *res = NULL; jpayne@68: PyObject *kwnames; jpayne@68: PyObject **newargs; jpayne@68: PyObject **kwvalues; jpayne@68: Py_ssize_t i, pos; jpayne@68: size_t j; jpayne@68: PyObject *key, *value; jpayne@68: unsigned long keys_are_strings; jpayne@68: Py_ssize_t nkw = PyDict_GET_SIZE(kw); jpayne@68: newargs = (PyObject **)PyMem_Malloc((nargs + (size_t)nkw) * sizeof(args[0])); jpayne@68: if (unlikely(newargs == NULL)) { jpayne@68: PyErr_NoMemory(); jpayne@68: return NULL; jpayne@68: } jpayne@68: for (j = 0; j < nargs; j++) newargs[j] = args[j]; jpayne@68: kwnames = PyTuple_New(nkw); jpayne@68: if (unlikely(kwnames == NULL)) { jpayne@68: PyMem_Free(newargs); jpayne@68: return NULL; jpayne@68: } jpayne@68: kwvalues = newargs + nargs; jpayne@68: pos = i = 0; jpayne@68: keys_are_strings = Py_TPFLAGS_UNICODE_SUBCLASS; jpayne@68: while (PyDict_Next(kw, &pos, &key, &value)) { jpayne@68: keys_are_strings &= Py_TYPE(key)->tp_flags; jpayne@68: Py_INCREF(key); jpayne@68: Py_INCREF(value); jpayne@68: PyTuple_SET_ITEM(kwnames, i, key); jpayne@68: kwvalues[i] = value; jpayne@68: i++; jpayne@68: } jpayne@68: if (unlikely(!keys_are_strings)) { jpayne@68: PyErr_SetString(PyExc_TypeError, "keywords must be strings"); jpayne@68: goto cleanup; jpayne@68: } jpayne@68: res = vc(func, newargs, nargs, kwnames); jpayne@68: cleanup: jpayne@68: Py_DECREF(kwnames); jpayne@68: for (i = 0; i < nkw; i++) jpayne@68: Py_DECREF(kwvalues[i]); jpayne@68: PyMem_Free(newargs); jpayne@68: return res; jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject *__Pyx_PyVectorcall_FastCallDict(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw) jpayne@68: { jpayne@68: if (likely(kw == NULL) || PyDict_GET_SIZE(kw) == 0) { jpayne@68: return vc(func, args, nargs, NULL); jpayne@68: } jpayne@68: return __Pyx_PyVectorcall_FastCallDict_kw(func, vc, args, nargs, kw); jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* CythonFunctionShared */ jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc) { jpayne@68: if (__Pyx_CyFunction_Check(func)) { jpayne@68: return PyCFunction_GetFunction(((__pyx_CyFunctionObject*)func)->func) == (PyCFunction) cfunc; jpayne@68: } else if (PyCFunction_Check(func)) { jpayne@68: return PyCFunction_GetFunction(func) == (PyCFunction) cfunc; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: #else jpayne@68: static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc) { jpayne@68: return __Pyx_CyOrPyCFunction_Check(func) && __Pyx_CyOrPyCFunction_GET_FUNCTION(func) == (PyCFunction) cfunc; jpayne@68: } jpayne@68: #endif jpayne@68: static CYTHON_INLINE void __Pyx__CyFunction_SetClassObj(__pyx_CyFunctionObject* f, PyObject* classobj) { jpayne@68: #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: __Pyx_Py_XDECREF_SET( jpayne@68: __Pyx_CyFunction_GetClassObj(f), jpayne@68: ((classobj) ? __Pyx_NewRef(classobj) : NULL)); jpayne@68: #else jpayne@68: __Pyx_Py_XDECREF_SET( jpayne@68: ((PyCMethodObject *) (f))->mm_class, jpayne@68: (PyTypeObject*)((classobj) ? __Pyx_NewRef(classobj) : NULL)); jpayne@68: #endif jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, void *closure) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(closure); jpayne@68: if (unlikely(op->func_doc == NULL)) { jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: op->func_doc = PyObject_GetAttrString(op->func, "__doc__"); jpayne@68: if (unlikely(!op->func_doc)) return NULL; jpayne@68: #else jpayne@68: if (((PyCFunctionObject*)op)->m_ml->ml_doc) { jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: op->func_doc = PyUnicode_FromString(((PyCFunctionObject*)op)->m_ml->ml_doc); jpayne@68: #else jpayne@68: op->func_doc = PyString_FromString(((PyCFunctionObject*)op)->m_ml->ml_doc); jpayne@68: #endif jpayne@68: if (unlikely(op->func_doc == NULL)) jpayne@68: return NULL; jpayne@68: } else { jpayne@68: Py_INCREF(Py_None); jpayne@68: return Py_None; jpayne@68: } jpayne@68: #endif jpayne@68: } jpayne@68: Py_INCREF(op->func_doc); jpayne@68: return op->func_doc; jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_set_doc(__pyx_CyFunctionObject *op, PyObject *value, void *context) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (value == NULL) { jpayne@68: value = Py_None; jpayne@68: } jpayne@68: Py_INCREF(value); jpayne@68: __Pyx_Py_XDECREF_SET(op->func_doc, value); jpayne@68: return 0; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op, void *context) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (unlikely(op->func_name == NULL)) { jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: op->func_name = PyObject_GetAttrString(op->func, "__name__"); jpayne@68: #elif PY_MAJOR_VERSION >= 3 jpayne@68: op->func_name = PyUnicode_InternFromString(((PyCFunctionObject*)op)->m_ml->ml_name); jpayne@68: #else jpayne@68: op->func_name = PyString_InternFromString(((PyCFunctionObject*)op)->m_ml->ml_name); jpayne@68: #endif jpayne@68: if (unlikely(op->func_name == NULL)) jpayne@68: return NULL; jpayne@68: } jpayne@68: Py_INCREF(op->func_name); jpayne@68: return op->func_name; jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value, void *context) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: if (unlikely(value == NULL || !PyUnicode_Check(value))) jpayne@68: #else jpayne@68: if (unlikely(value == NULL || !PyString_Check(value))) jpayne@68: #endif jpayne@68: { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "__name__ must be set to a string object"); jpayne@68: return -1; jpayne@68: } jpayne@68: Py_INCREF(value); jpayne@68: __Pyx_Py_XDECREF_SET(op->func_name, value); jpayne@68: return 0; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_qualname(__pyx_CyFunctionObject *op, void *context) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: Py_INCREF(op->func_qualname); jpayne@68: return op->func_qualname; jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject *op, PyObject *value, void *context) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: if (unlikely(value == NULL || !PyUnicode_Check(value))) jpayne@68: #else jpayne@68: if (unlikely(value == NULL || !PyString_Check(value))) jpayne@68: #endif jpayne@68: { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "__qualname__ must be set to a string object"); jpayne@68: return -1; jpayne@68: } jpayne@68: Py_INCREF(value); jpayne@68: __Pyx_Py_XDECREF_SET(op->func_qualname, value); jpayne@68: return 0; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op, void *context) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (unlikely(op->func_dict == NULL)) { jpayne@68: op->func_dict = PyDict_New(); jpayne@68: if (unlikely(op->func_dict == NULL)) jpayne@68: return NULL; jpayne@68: } jpayne@68: Py_INCREF(op->func_dict); jpayne@68: return op->func_dict; jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_set_dict(__pyx_CyFunctionObject *op, PyObject *value, void *context) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (unlikely(value == NULL)) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "function's dictionary may not be deleted"); jpayne@68: return -1; jpayne@68: } jpayne@68: if (unlikely(!PyDict_Check(value))) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "setting function's dictionary to a non-dict"); jpayne@68: return -1; jpayne@68: } jpayne@68: Py_INCREF(value); jpayne@68: __Pyx_Py_XDECREF_SET(op->func_dict, value); jpayne@68: return 0; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_globals(__pyx_CyFunctionObject *op, void *context) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: Py_INCREF(op->func_globals); jpayne@68: return op->func_globals; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_closure(__pyx_CyFunctionObject *op, void *context) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(op); jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: Py_INCREF(Py_None); jpayne@68: return Py_None; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op, void *context) jpayne@68: { jpayne@68: PyObject* result = (op->func_code) ? op->func_code : Py_None; jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: Py_INCREF(result); jpayne@68: return result; jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject *op) { jpayne@68: int result = 0; jpayne@68: PyObject *res = op->defaults_getter((PyObject *) op); jpayne@68: if (unlikely(!res)) jpayne@68: return -1; jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS jpayne@68: op->defaults_tuple = PyTuple_GET_ITEM(res, 0); jpayne@68: Py_INCREF(op->defaults_tuple); jpayne@68: op->defaults_kwdict = PyTuple_GET_ITEM(res, 1); jpayne@68: Py_INCREF(op->defaults_kwdict); jpayne@68: #else jpayne@68: op->defaults_tuple = __Pyx_PySequence_ITEM(res, 0); jpayne@68: if (unlikely(!op->defaults_tuple)) result = -1; jpayne@68: else { jpayne@68: op->defaults_kwdict = __Pyx_PySequence_ITEM(res, 1); jpayne@68: if (unlikely(!op->defaults_kwdict)) result = -1; jpayne@68: } jpayne@68: #endif jpayne@68: Py_DECREF(res); jpayne@68: return result; jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject *op, PyObject* value, void *context) { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (!value) { jpayne@68: value = Py_None; jpayne@68: } else if (unlikely(value != Py_None && !PyTuple_Check(value))) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "__defaults__ must be set to a tuple object"); jpayne@68: return -1; jpayne@68: } jpayne@68: PyErr_WarnEx(PyExc_RuntimeWarning, "changes to cyfunction.__defaults__ will not " jpayne@68: "currently affect the values used in function calls", 1); jpayne@68: Py_INCREF(value); jpayne@68: __Pyx_Py_XDECREF_SET(op->defaults_tuple, value); jpayne@68: return 0; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op, void *context) { jpayne@68: PyObject* result = op->defaults_tuple; jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (unlikely(!result)) { jpayne@68: if (op->defaults_getter) { jpayne@68: if (unlikely(__Pyx_CyFunction_init_defaults(op) < 0)) return NULL; jpayne@68: result = op->defaults_tuple; jpayne@68: } else { jpayne@68: result = Py_None; jpayne@68: } jpayne@68: } jpayne@68: Py_INCREF(result); jpayne@68: return result; jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_set_kwdefaults(__pyx_CyFunctionObject *op, PyObject* value, void *context) { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (!value) { jpayne@68: value = Py_None; jpayne@68: } else if (unlikely(value != Py_None && !PyDict_Check(value))) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "__kwdefaults__ must be set to a dict object"); jpayne@68: return -1; jpayne@68: } jpayne@68: PyErr_WarnEx(PyExc_RuntimeWarning, "changes to cyfunction.__kwdefaults__ will not " jpayne@68: "currently affect the values used in function calls", 1); jpayne@68: Py_INCREF(value); jpayne@68: __Pyx_Py_XDECREF_SET(op->defaults_kwdict, value); jpayne@68: return 0; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject *op, void *context) { jpayne@68: PyObject* result = op->defaults_kwdict; jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (unlikely(!result)) { jpayne@68: if (op->defaults_getter) { jpayne@68: if (unlikely(__Pyx_CyFunction_init_defaults(op) < 0)) return NULL; jpayne@68: result = op->defaults_kwdict; jpayne@68: } else { jpayne@68: result = Py_None; jpayne@68: } jpayne@68: } jpayne@68: Py_INCREF(result); jpayne@68: return result; jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_set_annotations(__pyx_CyFunctionObject *op, PyObject* value, void *context) { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (!value || value == Py_None) { jpayne@68: value = NULL; jpayne@68: } else if (unlikely(!PyDict_Check(value))) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "__annotations__ must be set to a dict object"); jpayne@68: return -1; jpayne@68: } jpayne@68: Py_XINCREF(value); jpayne@68: __Pyx_Py_XDECREF_SET(op->func_annotations, value); jpayne@68: return 0; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject *op, void *context) { jpayne@68: PyObject* result = op->func_annotations; jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (unlikely(!result)) { jpayne@68: result = PyDict_New(); jpayne@68: if (unlikely(!result)) return NULL; jpayne@68: op->func_annotations = result; jpayne@68: } jpayne@68: Py_INCREF(result); jpayne@68: return result; jpayne@68: } jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_is_coroutine(__pyx_CyFunctionObject *op, void *context) { jpayne@68: int is_coroutine; jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: if (op->func_is_coroutine) { jpayne@68: return __Pyx_NewRef(op->func_is_coroutine); jpayne@68: } jpayne@68: is_coroutine = op->flags & __Pyx_CYFUNCTION_COROUTINE; jpayne@68: #if PY_VERSION_HEX >= 0x03050000 jpayne@68: if (is_coroutine) { jpayne@68: PyObject *module, *fromlist, *marker = __pyx_n_s_is_coroutine; jpayne@68: fromlist = PyList_New(1); jpayne@68: if (unlikely(!fromlist)) return NULL; jpayne@68: Py_INCREF(marker); jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: PyList_SET_ITEM(fromlist, 0, marker); jpayne@68: #else jpayne@68: if (unlikely(PyList_SetItem(fromlist, 0, marker) < 0)) { jpayne@68: Py_DECREF(marker); jpayne@68: Py_DECREF(fromlist); jpayne@68: return NULL; jpayne@68: } jpayne@68: #endif jpayne@68: module = PyImport_ImportModuleLevelObject(__pyx_n_s_asyncio_coroutines, NULL, NULL, fromlist, 0); jpayne@68: Py_DECREF(fromlist); jpayne@68: if (unlikely(!module)) goto ignore; jpayne@68: op->func_is_coroutine = __Pyx_PyObject_GetAttrStr(module, marker); jpayne@68: Py_DECREF(module); jpayne@68: if (likely(op->func_is_coroutine)) { jpayne@68: return __Pyx_NewRef(op->func_is_coroutine); jpayne@68: } jpayne@68: ignore: jpayne@68: PyErr_Clear(); jpayne@68: } jpayne@68: #endif jpayne@68: op->func_is_coroutine = __Pyx_PyBool_FromLong(is_coroutine); jpayne@68: return __Pyx_NewRef(op->func_is_coroutine); jpayne@68: } jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_get_module(__pyx_CyFunctionObject *op, void *context) { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: return PyObject_GetAttrString(op->func, "__module__"); jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_set_module(__pyx_CyFunctionObject *op, PyObject* value, void *context) { jpayne@68: CYTHON_UNUSED_VAR(context); jpayne@68: return PyObject_SetAttrString(op->func, "__module__", value); jpayne@68: } jpayne@68: #endif jpayne@68: static PyGetSetDef __pyx_CyFunction_getsets[] = { jpayne@68: {(char *) "func_doc", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, jpayne@68: {(char *) "__doc__", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, jpayne@68: {(char *) "func_name", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, jpayne@68: {(char *) "__name__", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, jpayne@68: {(char *) "__qualname__", (getter)__Pyx_CyFunction_get_qualname, (setter)__Pyx_CyFunction_set_qualname, 0, 0}, jpayne@68: {(char *) "func_dict", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0}, jpayne@68: {(char *) "__dict__", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0}, jpayne@68: {(char *) "func_globals", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, jpayne@68: {(char *) "__globals__", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, jpayne@68: {(char *) "func_closure", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0}, jpayne@68: {(char *) "__closure__", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0}, jpayne@68: {(char *) "func_code", (getter)__Pyx_CyFunction_get_code, 0, 0, 0}, jpayne@68: {(char *) "__code__", (getter)__Pyx_CyFunction_get_code, 0, 0, 0}, jpayne@68: {(char *) "func_defaults", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, jpayne@68: {(char *) "__defaults__", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, jpayne@68: {(char *) "__kwdefaults__", (getter)__Pyx_CyFunction_get_kwdefaults, (setter)__Pyx_CyFunction_set_kwdefaults, 0, 0}, jpayne@68: {(char *) "__annotations__", (getter)__Pyx_CyFunction_get_annotations, (setter)__Pyx_CyFunction_set_annotations, 0, 0}, jpayne@68: {(char *) "_is_coroutine", (getter)__Pyx_CyFunction_get_is_coroutine, 0, 0, 0}, jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: {"__module__", (getter)__Pyx_CyFunction_get_module, (setter)__Pyx_CyFunction_set_module, 0, 0}, jpayne@68: #endif jpayne@68: {0, 0, 0, 0, 0} jpayne@68: }; jpayne@68: static PyMemberDef __pyx_CyFunction_members[] = { jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: {(char *) "__module__", T_OBJECT, offsetof(PyCFunctionObject, m_module), 0, 0}, jpayne@68: #endif jpayne@68: #if CYTHON_USE_TYPE_SPECS jpayne@68: {(char *) "__dictoffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_dict), READONLY, 0}, jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: #if CYTHON_BACKPORT_VECTORCALL jpayne@68: {(char *) "__vectorcalloffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_vectorcall), READONLY, 0}, jpayne@68: #else jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: {(char *) "__vectorcalloffset__", T_PYSSIZET, offsetof(PyCFunctionObject, vectorcall), READONLY, 0}, jpayne@68: #endif jpayne@68: #endif jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX < 0x030500A0 || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: {(char *) "__weaklistoffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_weakreflist), READONLY, 0}, jpayne@68: #else jpayne@68: {(char *) "__weaklistoffset__", T_PYSSIZET, offsetof(PyCFunctionObject, m_weakreflist), READONLY, 0}, jpayne@68: #endif jpayne@68: #endif jpayne@68: {0, 0, 0, 0, 0} jpayne@68: }; jpayne@68: static PyObject * jpayne@68: __Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, PyObject *args) jpayne@68: { jpayne@68: CYTHON_UNUSED_VAR(args); jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: Py_INCREF(m->func_qualname); jpayne@68: return m->func_qualname; jpayne@68: #else jpayne@68: return PyString_FromString(((PyCFunctionObject*)m)->m_ml->ml_name); jpayne@68: #endif jpayne@68: } jpayne@68: static PyMethodDef __pyx_CyFunction_methods[] = { jpayne@68: {"__reduce__", (PyCFunction)__Pyx_CyFunction_reduce, METH_VARARGS, 0}, jpayne@68: {0, 0, 0, 0} jpayne@68: }; jpayne@68: #if PY_VERSION_HEX < 0x030500A0 || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func_weakreflist) jpayne@68: #else jpayne@68: #define __Pyx_CyFunction_weakreflist(cyfunc) (((PyCFunctionObject*)cyfunc)->m_weakreflist) jpayne@68: #endif jpayne@68: static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject *op, PyMethodDef *ml, int flags, PyObject* qualname, jpayne@68: PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) { jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: PyCFunctionObject *cf = (PyCFunctionObject*) op; jpayne@68: #endif jpayne@68: if (unlikely(op == NULL)) jpayne@68: return NULL; jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: op->func = PyCFunction_NewEx(ml, (PyObject*)op, module); jpayne@68: if (unlikely(!op->func)) return NULL; jpayne@68: #endif jpayne@68: op->flags = flags; jpayne@68: __Pyx_CyFunction_weakreflist(op) = NULL; jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: cf->m_ml = ml; jpayne@68: cf->m_self = (PyObject *) op; jpayne@68: #endif jpayne@68: Py_XINCREF(closure); jpayne@68: op->func_closure = closure; jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: Py_XINCREF(module); jpayne@68: cf->m_module = module; jpayne@68: #endif jpayne@68: op->func_dict = NULL; jpayne@68: op->func_name = NULL; jpayne@68: Py_INCREF(qualname); jpayne@68: op->func_qualname = qualname; jpayne@68: op->func_doc = NULL; jpayne@68: #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API jpayne@68: op->func_classobj = NULL; jpayne@68: #else jpayne@68: ((PyCMethodObject*)op)->mm_class = NULL; jpayne@68: #endif jpayne@68: op->func_globals = globals; jpayne@68: Py_INCREF(op->func_globals); jpayne@68: Py_XINCREF(code); jpayne@68: op->func_code = code; jpayne@68: op->defaults_pyobjects = 0; jpayne@68: op->defaults_size = 0; jpayne@68: op->defaults = NULL; jpayne@68: op->defaults_tuple = NULL; jpayne@68: op->defaults_kwdict = NULL; jpayne@68: op->defaults_getter = NULL; jpayne@68: op->func_annotations = NULL; jpayne@68: op->func_is_coroutine = NULL; jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: switch (ml->ml_flags & (METH_VARARGS | METH_FASTCALL | METH_NOARGS | METH_O | METH_KEYWORDS | METH_METHOD)) { jpayne@68: case METH_NOARGS: jpayne@68: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_NOARGS; jpayne@68: break; jpayne@68: case METH_O: jpayne@68: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_O; jpayne@68: break; jpayne@68: case METH_METHOD | METH_FASTCALL | METH_KEYWORDS: jpayne@68: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD; jpayne@68: break; jpayne@68: case METH_FASTCALL | METH_KEYWORDS: jpayne@68: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS; jpayne@68: break; jpayne@68: case METH_VARARGS | METH_KEYWORDS: jpayne@68: __Pyx_CyFunction_func_vectorcall(op) = NULL; jpayne@68: break; jpayne@68: default: jpayne@68: PyErr_SetString(PyExc_SystemError, "Bad call flags for CyFunction"); jpayne@68: Py_DECREF(op); jpayne@68: return NULL; jpayne@68: } jpayne@68: #endif jpayne@68: return (PyObject *) op; jpayne@68: } jpayne@68: static int jpayne@68: __Pyx_CyFunction_clear(__pyx_CyFunctionObject *m) jpayne@68: { jpayne@68: Py_CLEAR(m->func_closure); jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: Py_CLEAR(m->func); jpayne@68: #else jpayne@68: Py_CLEAR(((PyCFunctionObject*)m)->m_module); jpayne@68: #endif jpayne@68: Py_CLEAR(m->func_dict); jpayne@68: Py_CLEAR(m->func_name); jpayne@68: Py_CLEAR(m->func_qualname); jpayne@68: Py_CLEAR(m->func_doc); jpayne@68: Py_CLEAR(m->func_globals); jpayne@68: Py_CLEAR(m->func_code); jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #if PY_VERSION_HEX < 0x030900B1 jpayne@68: Py_CLEAR(__Pyx_CyFunction_GetClassObj(m)); jpayne@68: #else jpayne@68: { jpayne@68: PyObject *cls = (PyObject*) ((PyCMethodObject *) (m))->mm_class; jpayne@68: ((PyCMethodObject *) (m))->mm_class = NULL; jpayne@68: Py_XDECREF(cls); jpayne@68: } jpayne@68: #endif jpayne@68: #endif jpayne@68: Py_CLEAR(m->defaults_tuple); jpayne@68: Py_CLEAR(m->defaults_kwdict); jpayne@68: Py_CLEAR(m->func_annotations); jpayne@68: Py_CLEAR(m->func_is_coroutine); jpayne@68: if (m->defaults) { jpayne@68: PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m); jpayne@68: int i; jpayne@68: for (i = 0; i < m->defaults_pyobjects; i++) jpayne@68: Py_XDECREF(pydefaults[i]); jpayne@68: PyObject_Free(m->defaults); jpayne@68: m->defaults = NULL; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: static void __Pyx__CyFunction_dealloc(__pyx_CyFunctionObject *m) jpayne@68: { jpayne@68: if (__Pyx_CyFunction_weakreflist(m) != NULL) jpayne@68: PyObject_ClearWeakRefs((PyObject *) m); jpayne@68: __Pyx_CyFunction_clear(m); jpayne@68: __Pyx_PyHeapTypeObject_GC_Del(m); jpayne@68: } jpayne@68: static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m) jpayne@68: { jpayne@68: PyObject_GC_UnTrack(m); jpayne@68: __Pyx__CyFunction_dealloc(m); jpayne@68: } jpayne@68: static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, void *arg) jpayne@68: { jpayne@68: Py_VISIT(m->func_closure); jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: Py_VISIT(m->func); jpayne@68: #else jpayne@68: Py_VISIT(((PyCFunctionObject*)m)->m_module); jpayne@68: #endif jpayne@68: Py_VISIT(m->func_dict); jpayne@68: Py_VISIT(m->func_name); jpayne@68: Py_VISIT(m->func_qualname); jpayne@68: Py_VISIT(m->func_doc); jpayne@68: Py_VISIT(m->func_globals); jpayne@68: Py_VISIT(m->func_code); jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: Py_VISIT(__Pyx_CyFunction_GetClassObj(m)); jpayne@68: #endif jpayne@68: Py_VISIT(m->defaults_tuple); jpayne@68: Py_VISIT(m->defaults_kwdict); jpayne@68: Py_VISIT(m->func_is_coroutine); jpayne@68: if (m->defaults) { jpayne@68: PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m); jpayne@68: int i; jpayne@68: for (i = 0; i < m->defaults_pyobjects; i++) jpayne@68: Py_VISIT(pydefaults[i]); jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: static PyObject* jpayne@68: __Pyx_CyFunction_repr(__pyx_CyFunctionObject *op) jpayne@68: { jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: return PyUnicode_FromFormat("", jpayne@68: op->func_qualname, (void *)op); jpayne@68: #else jpayne@68: return PyString_FromFormat("", jpayne@68: PyString_AsString(op->func_qualname), (void *)op); jpayne@68: #endif jpayne@68: } jpayne@68: static PyObject * __Pyx_CyFunction_CallMethod(PyObject *func, PyObject *self, PyObject *arg, PyObject *kw) { jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: PyObject *f = ((__pyx_CyFunctionObject*)func)->func; jpayne@68: PyObject *py_name = NULL; jpayne@68: PyCFunction meth; jpayne@68: int flags; jpayne@68: meth = PyCFunction_GetFunction(f); jpayne@68: if (unlikely(!meth)) return NULL; jpayne@68: flags = PyCFunction_GetFlags(f); jpayne@68: if (unlikely(flags < 0)) return NULL; jpayne@68: #else jpayne@68: PyCFunctionObject* f = (PyCFunctionObject*)func; jpayne@68: PyCFunction meth = f->m_ml->ml_meth; jpayne@68: int flags = f->m_ml->ml_flags; jpayne@68: #endif jpayne@68: Py_ssize_t size; jpayne@68: switch (flags & (METH_VARARGS | METH_KEYWORDS | METH_NOARGS | METH_O)) { jpayne@68: case METH_VARARGS: jpayne@68: if (likely(kw == NULL || PyDict_Size(kw) == 0)) jpayne@68: return (*meth)(self, arg); jpayne@68: break; jpayne@68: case METH_VARARGS | METH_KEYWORDS: jpayne@68: return (*(PyCFunctionWithKeywords)(void*)meth)(self, arg, kw); jpayne@68: case METH_NOARGS: jpayne@68: if (likely(kw == NULL || PyDict_Size(kw) == 0)) { jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: size = PyTuple_GET_SIZE(arg); jpayne@68: #else jpayne@68: size = PyTuple_Size(arg); jpayne@68: if (unlikely(size < 0)) return NULL; jpayne@68: #endif jpayne@68: if (likely(size == 0)) jpayne@68: return (*meth)(self, NULL); jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: py_name = __Pyx_CyFunction_get_name((__pyx_CyFunctionObject*)func, NULL); jpayne@68: if (!py_name) return NULL; jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200S() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@68: py_name, size); jpayne@68: Py_DECREF(py_name); jpayne@68: #else jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@68: f->m_ml->ml_name, size); jpayne@68: #endif jpayne@68: return NULL; jpayne@68: } jpayne@68: break; jpayne@68: case METH_O: jpayne@68: if (likely(kw == NULL || PyDict_Size(kw) == 0)) { jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: size = PyTuple_GET_SIZE(arg); jpayne@68: #else jpayne@68: size = PyTuple_Size(arg); jpayne@68: if (unlikely(size < 0)) return NULL; jpayne@68: #endif jpayne@68: if (likely(size == 1)) { jpayne@68: PyObject *result, *arg0; jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS jpayne@68: arg0 = PyTuple_GET_ITEM(arg, 0); jpayne@68: #else jpayne@68: arg0 = __Pyx_PySequence_ITEM(arg, 0); if (unlikely(!arg0)) return NULL; jpayne@68: #endif jpayne@68: result = (*meth)(self, arg0); jpayne@68: #if !(CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS) jpayne@68: Py_DECREF(arg0); jpayne@68: #endif jpayne@68: return result; jpayne@68: } jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: py_name = __Pyx_CyFunction_get_name((__pyx_CyFunctionObject*)func, NULL); jpayne@68: if (!py_name) return NULL; jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200S() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@68: py_name, size); jpayne@68: Py_DECREF(py_name); jpayne@68: #else jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@68: f->m_ml->ml_name, size); jpayne@68: #endif jpayne@68: return NULL; jpayne@68: } jpayne@68: break; jpayne@68: default: jpayne@68: PyErr_SetString(PyExc_SystemError, "Bad call flags for CyFunction"); jpayne@68: return NULL; jpayne@68: } jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: py_name = __Pyx_CyFunction_get_name((__pyx_CyFunctionObject*)func, NULL); jpayne@68: if (!py_name) return NULL; jpayne@68: PyErr_Format(PyExc_TypeError, "%.200S() takes no keyword arguments", jpayne@68: py_name); jpayne@68: Py_DECREF(py_name); jpayne@68: #else jpayne@68: PyErr_Format(PyExc_TypeError, "%.200s() takes no keyword arguments", jpayne@68: f->m_ml->ml_name); jpayne@68: #endif jpayne@68: return NULL; jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject *__Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) { jpayne@68: PyObject *self, *result; jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: self = PyCFunction_GetSelf(((__pyx_CyFunctionObject*)func)->func); jpayne@68: if (unlikely(!self) && PyErr_Occurred()) return NULL; jpayne@68: #else jpayne@68: self = ((PyCFunctionObject*)func)->m_self; jpayne@68: #endif jpayne@68: result = __Pyx_CyFunction_CallMethod(func, self, arg, kw); jpayne@68: return result; jpayne@68: } jpayne@68: static PyObject *__Pyx_CyFunction_CallAsMethod(PyObject *func, PyObject *args, PyObject *kw) { jpayne@68: PyObject *result; jpayne@68: __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *) func; jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: __pyx_vectorcallfunc vc = __Pyx_CyFunction_func_vectorcall(cyfunc); jpayne@68: if (vc) { jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: return __Pyx_PyVectorcall_FastCallDict(func, vc, &PyTuple_GET_ITEM(args, 0), (size_t)PyTuple_GET_SIZE(args), kw); jpayne@68: #else jpayne@68: (void) &__Pyx_PyVectorcall_FastCallDict; jpayne@68: return PyVectorcall_Call(func, args, kw); jpayne@68: #endif jpayne@68: } jpayne@68: #endif jpayne@68: if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) { jpayne@68: Py_ssize_t argc; jpayne@68: PyObject *new_args; jpayne@68: PyObject *self; jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: argc = PyTuple_GET_SIZE(args); jpayne@68: #else jpayne@68: argc = PyTuple_Size(args); jpayne@68: if (unlikely(!argc) < 0) return NULL; jpayne@68: #endif jpayne@68: new_args = PyTuple_GetSlice(args, 1, argc); jpayne@68: if (unlikely(!new_args)) jpayne@68: return NULL; jpayne@68: self = PyTuple_GetItem(args, 0); jpayne@68: if (unlikely(!self)) { jpayne@68: Py_DECREF(new_args); jpayne@68: #if PY_MAJOR_VERSION > 2 jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "unbound method %.200S() needs an argument", jpayne@68: cyfunc->func_qualname); jpayne@68: #else jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "unbound method needs an argument"); jpayne@68: #endif jpayne@68: return NULL; jpayne@68: } jpayne@68: result = __Pyx_CyFunction_CallMethod(func, self, new_args, kw); jpayne@68: Py_DECREF(new_args); jpayne@68: } else { jpayne@68: result = __Pyx_CyFunction_Call(func, args, kw); jpayne@68: } jpayne@68: return result; jpayne@68: } jpayne@68: #if CYTHON_METH_FASTCALL jpayne@68: static CYTHON_INLINE int __Pyx_CyFunction_Vectorcall_CheckArgs(__pyx_CyFunctionObject *cyfunc, Py_ssize_t nargs, PyObject *kwnames) jpayne@68: { jpayne@68: int ret = 0; jpayne@68: if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) { jpayne@68: if (unlikely(nargs < 1)) { jpayne@68: PyErr_Format(PyExc_TypeError, "%.200s() needs an argument", jpayne@68: ((PyCFunctionObject*)cyfunc)->m_ml->ml_name); jpayne@68: return -1; jpayne@68: } jpayne@68: ret = 1; jpayne@68: } jpayne@68: if (unlikely(kwnames) && unlikely(PyTuple_GET_SIZE(kwnames))) { jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() takes no keyword arguments", ((PyCFunctionObject*)cyfunc)->m_ml->ml_name); jpayne@68: return -1; jpayne@68: } jpayne@68: return ret; jpayne@68: } jpayne@68: static PyObject * __Pyx_CyFunction_Vectorcall_NOARGS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) jpayne@68: { jpayne@68: __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; jpayne@68: PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; jpayne@68: #if CYTHON_BACKPORT_VECTORCALL jpayne@68: Py_ssize_t nargs = (Py_ssize_t)nargsf; jpayne@68: #else jpayne@68: Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); jpayne@68: #endif jpayne@68: PyObject *self; jpayne@68: switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, kwnames)) { jpayne@68: case 1: jpayne@68: self = args[0]; jpayne@68: args += 1; jpayne@68: nargs -= 1; jpayne@68: break; jpayne@68: case 0: jpayne@68: self = ((PyCFunctionObject*)cyfunc)->m_self; jpayne@68: break; jpayne@68: default: jpayne@68: return NULL; jpayne@68: } jpayne@68: if (unlikely(nargs != 0)) { jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@68: def->ml_name, nargs); jpayne@68: return NULL; jpayne@68: } jpayne@68: return def->ml_meth(self, NULL); jpayne@68: } jpayne@68: static PyObject * __Pyx_CyFunction_Vectorcall_O(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) jpayne@68: { jpayne@68: __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; jpayne@68: PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; jpayne@68: #if CYTHON_BACKPORT_VECTORCALL jpayne@68: Py_ssize_t nargs = (Py_ssize_t)nargsf; jpayne@68: #else jpayne@68: Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); jpayne@68: #endif jpayne@68: PyObject *self; jpayne@68: switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, kwnames)) { jpayne@68: case 1: jpayne@68: self = args[0]; jpayne@68: args += 1; jpayne@68: nargs -= 1; jpayne@68: break; jpayne@68: case 0: jpayne@68: self = ((PyCFunctionObject*)cyfunc)->m_self; jpayne@68: break; jpayne@68: default: jpayne@68: return NULL; jpayne@68: } jpayne@68: if (unlikely(nargs != 1)) { jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", jpayne@68: def->ml_name, nargs); jpayne@68: return NULL; jpayne@68: } jpayne@68: return def->ml_meth(self, args[0]); jpayne@68: } jpayne@68: static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) jpayne@68: { jpayne@68: __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; jpayne@68: PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; jpayne@68: #if CYTHON_BACKPORT_VECTORCALL jpayne@68: Py_ssize_t nargs = (Py_ssize_t)nargsf; jpayne@68: #else jpayne@68: Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); jpayne@68: #endif jpayne@68: PyObject *self; jpayne@68: switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, NULL)) { jpayne@68: case 1: jpayne@68: self = args[0]; jpayne@68: args += 1; jpayne@68: nargs -= 1; jpayne@68: break; jpayne@68: case 0: jpayne@68: self = ((PyCFunctionObject*)cyfunc)->m_self; jpayne@68: break; jpayne@68: default: jpayne@68: return NULL; jpayne@68: } jpayne@68: return ((__Pyx_PyCFunctionFastWithKeywords)(void(*)(void))def->ml_meth)(self, args, nargs, kwnames); jpayne@68: } jpayne@68: static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) jpayne@68: { jpayne@68: __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; jpayne@68: PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; jpayne@68: PyTypeObject *cls = (PyTypeObject *) __Pyx_CyFunction_GetClassObj(cyfunc); jpayne@68: #if CYTHON_BACKPORT_VECTORCALL jpayne@68: Py_ssize_t nargs = (Py_ssize_t)nargsf; jpayne@68: #else jpayne@68: Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); jpayne@68: #endif jpayne@68: PyObject *self; jpayne@68: switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, NULL)) { jpayne@68: case 1: jpayne@68: self = args[0]; jpayne@68: args += 1; jpayne@68: nargs -= 1; jpayne@68: break; jpayne@68: case 0: jpayne@68: self = ((PyCFunctionObject*)cyfunc)->m_self; jpayne@68: break; jpayne@68: default: jpayne@68: return NULL; jpayne@68: } jpayne@68: return ((__Pyx_PyCMethod)(void(*)(void))def->ml_meth)(self, cls, args, (size_t)nargs, kwnames); jpayne@68: } jpayne@68: #endif jpayne@68: #if CYTHON_USE_TYPE_SPECS jpayne@68: static PyType_Slot __pyx_CyFunctionType_slots[] = { jpayne@68: {Py_tp_dealloc, (void *)__Pyx_CyFunction_dealloc}, jpayne@68: {Py_tp_repr, (void *)__Pyx_CyFunction_repr}, jpayne@68: {Py_tp_call, (void *)__Pyx_CyFunction_CallAsMethod}, jpayne@68: {Py_tp_traverse, (void *)__Pyx_CyFunction_traverse}, jpayne@68: {Py_tp_clear, (void *)__Pyx_CyFunction_clear}, jpayne@68: {Py_tp_methods, (void *)__pyx_CyFunction_methods}, jpayne@68: {Py_tp_members, (void *)__pyx_CyFunction_members}, jpayne@68: {Py_tp_getset, (void *)__pyx_CyFunction_getsets}, jpayne@68: {Py_tp_descr_get, (void *)__Pyx_PyMethod_New}, jpayne@68: {0, 0}, jpayne@68: }; jpayne@68: static PyType_Spec __pyx_CyFunctionType_spec = { jpayne@68: __PYX_TYPE_MODULE_PREFIX "cython_function_or_method", jpayne@68: sizeof(__pyx_CyFunctionObject), jpayne@68: 0, jpayne@68: #ifdef Py_TPFLAGS_METHOD_DESCRIPTOR jpayne@68: Py_TPFLAGS_METHOD_DESCRIPTOR | jpayne@68: #endif jpayne@68: #if (defined(_Py_TPFLAGS_HAVE_VECTORCALL) && CYTHON_METH_FASTCALL) jpayne@68: _Py_TPFLAGS_HAVE_VECTORCALL | jpayne@68: #endif jpayne@68: Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC | Py_TPFLAGS_BASETYPE, jpayne@68: __pyx_CyFunctionType_slots jpayne@68: }; jpayne@68: #else jpayne@68: static PyTypeObject __pyx_CyFunctionType_type = { jpayne@68: PyVarObject_HEAD_INIT(0, 0) jpayne@68: __PYX_TYPE_MODULE_PREFIX "cython_function_or_method", jpayne@68: sizeof(__pyx_CyFunctionObject), jpayne@68: 0, jpayne@68: (destructor) __Pyx_CyFunction_dealloc, jpayne@68: #if !CYTHON_METH_FASTCALL jpayne@68: 0, jpayne@68: #elif CYTHON_BACKPORT_VECTORCALL jpayne@68: (printfunc)offsetof(__pyx_CyFunctionObject, func_vectorcall), jpayne@68: #else jpayne@68: offsetof(PyCFunctionObject, vectorcall), jpayne@68: #endif jpayne@68: 0, jpayne@68: 0, jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: 0, jpayne@68: #else jpayne@68: 0, jpayne@68: #endif jpayne@68: (reprfunc) __Pyx_CyFunction_repr, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: __Pyx_CyFunction_CallAsMethod, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: #ifdef Py_TPFLAGS_METHOD_DESCRIPTOR jpayne@68: Py_TPFLAGS_METHOD_DESCRIPTOR | jpayne@68: #endif jpayne@68: #if defined(_Py_TPFLAGS_HAVE_VECTORCALL) && CYTHON_METH_FASTCALL jpayne@68: _Py_TPFLAGS_HAVE_VECTORCALL | jpayne@68: #endif jpayne@68: Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC | Py_TPFLAGS_BASETYPE, jpayne@68: 0, jpayne@68: (traverseproc) __Pyx_CyFunction_traverse, jpayne@68: (inquiry) __Pyx_CyFunction_clear, jpayne@68: 0, jpayne@68: #if PY_VERSION_HEX < 0x030500A0 jpayne@68: offsetof(__pyx_CyFunctionObject, func_weakreflist), jpayne@68: #else jpayne@68: offsetof(PyCFunctionObject, m_weakreflist), jpayne@68: #endif jpayne@68: 0, jpayne@68: 0, jpayne@68: __pyx_CyFunction_methods, jpayne@68: __pyx_CyFunction_members, jpayne@68: __pyx_CyFunction_getsets, jpayne@68: 0, jpayne@68: 0, jpayne@68: __Pyx_PyMethod_New, jpayne@68: 0, jpayne@68: offsetof(__pyx_CyFunctionObject, func_dict), jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: #if PY_VERSION_HEX >= 0x030400a1 jpayne@68: 0, jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) jpayne@68: 0, jpayne@68: #endif jpayne@68: #if __PYX_NEED_TP_PRINT_SLOT jpayne@68: 0, jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030C0000 jpayne@68: 0, jpayne@68: #endif jpayne@68: #if PY_VERSION_HEX >= 0x030d00A4 jpayne@68: 0, jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 jpayne@68: 0, jpayne@68: #endif jpayne@68: }; jpayne@68: #endif jpayne@68: static int __pyx_CyFunction_init(PyObject *module) { jpayne@68: #if CYTHON_USE_TYPE_SPECS jpayne@68: __pyx_CyFunctionType = __Pyx_FetchCommonTypeFromSpec(module, &__pyx_CyFunctionType_spec, NULL); jpayne@68: #else jpayne@68: CYTHON_UNUSED_VAR(module); jpayne@68: __pyx_CyFunctionType = __Pyx_FetchCommonType(&__pyx_CyFunctionType_type); jpayne@68: #endif jpayne@68: if (unlikely(__pyx_CyFunctionType == NULL)) { jpayne@68: return -1; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects) { jpayne@68: __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; jpayne@68: m->defaults = PyObject_Malloc(size); jpayne@68: if (unlikely(!m->defaults)) jpayne@68: return PyErr_NoMemory(); jpayne@68: memset(m->defaults, 0, size); jpayne@68: m->defaults_pyobjects = pyobjects; jpayne@68: m->defaults_size = size; jpayne@68: return m->defaults; jpayne@68: } jpayne@68: static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) { jpayne@68: __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; jpayne@68: m->defaults_tuple = tuple; jpayne@68: Py_INCREF(tuple); jpayne@68: } jpayne@68: static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *func, PyObject *dict) { jpayne@68: __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; jpayne@68: m->defaults_kwdict = dict; jpayne@68: Py_INCREF(dict); jpayne@68: } jpayne@68: static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, PyObject *dict) { jpayne@68: __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; jpayne@68: m->func_annotations = dict; jpayne@68: Py_INCREF(dict); jpayne@68: } jpayne@68: jpayne@68: /* CythonFunction */ jpayne@68: static PyObject *__Pyx_CyFunction_New(PyMethodDef *ml, int flags, PyObject* qualname, jpayne@68: PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) { jpayne@68: PyObject *op = __Pyx_CyFunction_Init( jpayne@68: PyObject_GC_New(__pyx_CyFunctionObject, __pyx_CyFunctionType), jpayne@68: ml, flags, qualname, closure, module, globals, code jpayne@68: ); jpayne@68: if (likely(op)) { jpayne@68: PyObject_GC_Track(op); jpayne@68: } jpayne@68: return op; jpayne@68: } jpayne@68: jpayne@68: /* Py3UpdateBases */ jpayne@68: static PyObject* jpayne@68: __Pyx_PEP560_update_bases(PyObject *bases) jpayne@68: { jpayne@68: Py_ssize_t i, j, size_bases; jpayne@68: PyObject *base, *meth, *new_base, *result, *new_bases = NULL; jpayne@68: size_bases = PyTuple_GET_SIZE(bases); jpayne@68: for (i = 0; i < size_bases; i++) { jpayne@68: base = PyTuple_GET_ITEM(bases, i); jpayne@68: if (PyType_Check(base)) { jpayne@68: if (new_bases) { jpayne@68: if (PyList_Append(new_bases, base) < 0) { jpayne@68: goto error; jpayne@68: } jpayne@68: } jpayne@68: continue; jpayne@68: } jpayne@68: meth = __Pyx_PyObject_GetAttrStrNoError(base, __pyx_n_s_mro_entries); jpayne@68: if (!meth && PyErr_Occurred()) { jpayne@68: goto error; jpayne@68: } jpayne@68: if (!meth) { jpayne@68: if (new_bases) { jpayne@68: if (PyList_Append(new_bases, base) < 0) { jpayne@68: goto error; jpayne@68: } jpayne@68: } jpayne@68: continue; jpayne@68: } jpayne@68: new_base = __Pyx_PyObject_CallOneArg(meth, bases); jpayne@68: Py_DECREF(meth); jpayne@68: if (!new_base) { jpayne@68: goto error; jpayne@68: } jpayne@68: if (!PyTuple_Check(new_base)) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "__mro_entries__ must return a tuple"); jpayne@68: Py_DECREF(new_base); jpayne@68: goto error; jpayne@68: } jpayne@68: if (!new_bases) { jpayne@68: if (!(new_bases = PyList_New(i))) { jpayne@68: goto error; jpayne@68: } jpayne@68: for (j = 0; j < i; j++) { jpayne@68: base = PyTuple_GET_ITEM(bases, j); jpayne@68: PyList_SET_ITEM(new_bases, j, base); jpayne@68: Py_INCREF(base); jpayne@68: } jpayne@68: } jpayne@68: j = PyList_GET_SIZE(new_bases); jpayne@68: if (PyList_SetSlice(new_bases, j, j, new_base) < 0) { jpayne@68: goto error; jpayne@68: } jpayne@68: Py_DECREF(new_base); jpayne@68: } jpayne@68: if (!new_bases) { jpayne@68: Py_INCREF(bases); jpayne@68: return bases; jpayne@68: } jpayne@68: result = PyList_AsTuple(new_bases); jpayne@68: Py_DECREF(new_bases); jpayne@68: return result; jpayne@68: error: jpayne@68: Py_XDECREF(new_bases); jpayne@68: return NULL; jpayne@68: } jpayne@68: jpayne@68: /* CalculateMetaclass */ jpayne@68: static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bases) { jpayne@68: Py_ssize_t i, nbases; jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: nbases = PyTuple_GET_SIZE(bases); jpayne@68: #else jpayne@68: nbases = PyTuple_Size(bases); jpayne@68: if (nbases < 0) return NULL; jpayne@68: #endif jpayne@68: for (i=0; i < nbases; i++) { jpayne@68: PyTypeObject *tmptype; jpayne@68: #if CYTHON_ASSUME_SAFE_MACROS jpayne@68: PyObject *tmp = PyTuple_GET_ITEM(bases, i); jpayne@68: #else jpayne@68: PyObject *tmp = PyTuple_GetItem(bases, i); jpayne@68: if (!tmp) return NULL; jpayne@68: #endif jpayne@68: tmptype = Py_TYPE(tmp); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (tmptype == &PyClass_Type) jpayne@68: continue; jpayne@68: #endif jpayne@68: if (!metaclass) { jpayne@68: metaclass = tmptype; jpayne@68: continue; jpayne@68: } jpayne@68: if (PyType_IsSubtype(metaclass, tmptype)) jpayne@68: continue; jpayne@68: if (PyType_IsSubtype(tmptype, metaclass)) { jpayne@68: metaclass = tmptype; jpayne@68: continue; jpayne@68: } jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "metaclass conflict: " jpayne@68: "the metaclass of a derived class " jpayne@68: "must be a (non-strict) subclass " jpayne@68: "of the metaclasses of all its bases"); jpayne@68: return NULL; jpayne@68: } jpayne@68: if (!metaclass) { jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: metaclass = &PyClass_Type; jpayne@68: #else jpayne@68: metaclass = &PyType_Type; jpayne@68: #endif jpayne@68: } jpayne@68: Py_INCREF((PyObject*) metaclass); jpayne@68: return (PyObject*) metaclass; jpayne@68: } jpayne@68: jpayne@68: /* PyObjectLookupSpecial */ jpayne@68: #if CYTHON_USE_PYTYPE_LOOKUP && CYTHON_USE_TYPE_SLOTS jpayne@68: static CYTHON_INLINE PyObject* __Pyx__PyObject_LookupSpecial(PyObject* obj, PyObject* attr_name, int with_error) { jpayne@68: PyObject *res; jpayne@68: PyTypeObject *tp = Py_TYPE(obj); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (unlikely(PyInstance_Check(obj))) jpayne@68: return with_error ? __Pyx_PyObject_GetAttrStr(obj, attr_name) : __Pyx_PyObject_GetAttrStrNoError(obj, attr_name); jpayne@68: #endif jpayne@68: res = _PyType_Lookup(tp, attr_name); jpayne@68: if (likely(res)) { jpayne@68: descrgetfunc f = Py_TYPE(res)->tp_descr_get; jpayne@68: if (!f) { jpayne@68: Py_INCREF(res); jpayne@68: } else { jpayne@68: res = f(res, obj, (PyObject *)tp); jpayne@68: } jpayne@68: } else if (with_error) { jpayne@68: PyErr_SetObject(PyExc_AttributeError, attr_name); jpayne@68: } jpayne@68: return res; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* Py3ClassCreate */ jpayne@68: static PyObject *__Pyx_Py3MetaclassPrepare(PyObject *metaclass, PyObject *bases, PyObject *name, jpayne@68: PyObject *qualname, PyObject *mkw, PyObject *modname, PyObject *doc) { jpayne@68: PyObject *ns; jpayne@68: if (metaclass) { jpayne@68: PyObject *prep = __Pyx_PyObject_GetAttrStrNoError(metaclass, __pyx_n_s_prepare); jpayne@68: if (prep) { jpayne@68: PyObject *pargs[3] = {NULL, name, bases}; jpayne@68: ns = __Pyx_PyObject_FastCallDict(prep, pargs+1, 2 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET, mkw); jpayne@68: Py_DECREF(prep); jpayne@68: } else { jpayne@68: if (unlikely(PyErr_Occurred())) jpayne@68: return NULL; jpayne@68: ns = PyDict_New(); jpayne@68: } jpayne@68: } else { jpayne@68: ns = PyDict_New(); jpayne@68: } jpayne@68: if (unlikely(!ns)) jpayne@68: return NULL; jpayne@68: if (unlikely(PyObject_SetItem(ns, __pyx_n_s_module, modname) < 0)) goto bad; jpayne@68: #if PY_VERSION_HEX >= 0x03030000 jpayne@68: if (unlikely(PyObject_SetItem(ns, __pyx_n_s_qualname, qualname) < 0)) goto bad; jpayne@68: #else jpayne@68: CYTHON_MAYBE_UNUSED_VAR(qualname); jpayne@68: #endif jpayne@68: if (unlikely(doc && PyObject_SetItem(ns, __pyx_n_s_doc, doc) < 0)) goto bad; jpayne@68: return ns; jpayne@68: bad: jpayne@68: Py_DECREF(ns); jpayne@68: return NULL; jpayne@68: } jpayne@68: #if PY_VERSION_HEX < 0x030600A4 && CYTHON_PEP487_INIT_SUBCLASS jpayne@68: static int __Pyx_SetNamesPEP487(PyObject *type_obj) { jpayne@68: PyTypeObject *type = (PyTypeObject*) type_obj; jpayne@68: PyObject *names_to_set, *key, *value, *set_name, *tmp; jpayne@68: Py_ssize_t i = 0; jpayne@68: #if CYTHON_USE_TYPE_SLOTS jpayne@68: names_to_set = PyDict_Copy(type->tp_dict); jpayne@68: #else jpayne@68: { jpayne@68: PyObject *d = PyObject_GetAttr(type_obj, __pyx_n_s_dict); jpayne@68: names_to_set = NULL; jpayne@68: if (likely(d)) { jpayne@68: PyObject *names_to_set = PyDict_New(); jpayne@68: int ret = likely(names_to_set) ? PyDict_Update(names_to_set, d) : -1; jpayne@68: Py_DECREF(d); jpayne@68: if (unlikely(ret < 0)) jpayne@68: Py_CLEAR(names_to_set); jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: if (unlikely(names_to_set == NULL)) jpayne@68: goto bad; jpayne@68: while (PyDict_Next(names_to_set, &i, &key, &value)) { jpayne@68: set_name = __Pyx_PyObject_LookupSpecialNoError(value, __pyx_n_s_set_name); jpayne@68: if (unlikely(set_name != NULL)) { jpayne@68: tmp = __Pyx_PyObject_Call2Args(set_name, type_obj, key); jpayne@68: Py_DECREF(set_name); jpayne@68: if (unlikely(tmp == NULL)) { jpayne@68: __Pyx_TypeName value_type_name = jpayne@68: __Pyx_PyType_GetName(Py_TYPE(value)); jpayne@68: __Pyx_TypeName type_name = __Pyx_PyType_GetName(type); jpayne@68: PyErr_Format(PyExc_RuntimeError, jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: "Error calling __set_name__ on '" __Pyx_FMT_TYPENAME "' instance %R " "in '" __Pyx_FMT_TYPENAME "'", jpayne@68: value_type_name, key, type_name); jpayne@68: #else jpayne@68: "Error calling __set_name__ on '" __Pyx_FMT_TYPENAME "' instance %.100s in '" __Pyx_FMT_TYPENAME "'", jpayne@68: value_type_name, jpayne@68: PyString_Check(key) ? PyString_AS_STRING(key) : "?", jpayne@68: type_name); jpayne@68: #endif jpayne@68: goto bad; jpayne@68: } else { jpayne@68: Py_DECREF(tmp); jpayne@68: } jpayne@68: } jpayne@68: else if (unlikely(PyErr_Occurred())) { jpayne@68: goto bad; jpayne@68: } jpayne@68: } jpayne@68: Py_DECREF(names_to_set); jpayne@68: return 0; jpayne@68: bad: jpayne@68: Py_XDECREF(names_to_set); jpayne@68: return -1; jpayne@68: } jpayne@68: static PyObject *__Pyx_InitSubclassPEP487(PyObject *type_obj, PyObject *mkw) { jpayne@68: #if CYTHON_USE_TYPE_SLOTS && CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS jpayne@68: PyTypeObject *type = (PyTypeObject*) type_obj; jpayne@68: PyObject *mro = type->tp_mro; jpayne@68: Py_ssize_t i, nbases; jpayne@68: if (unlikely(!mro)) goto done; jpayne@68: (void) &__Pyx_GetBuiltinName; jpayne@68: Py_INCREF(mro); jpayne@68: nbases = PyTuple_GET_SIZE(mro); jpayne@68: assert(PyTuple_GET_ITEM(mro, 0) == type_obj); jpayne@68: for (i = 1; i < nbases-1; i++) { jpayne@68: PyObject *base, *dict, *meth; jpayne@68: base = PyTuple_GET_ITEM(mro, i); jpayne@68: dict = ((PyTypeObject *)base)->tp_dict; jpayne@68: meth = __Pyx_PyDict_GetItemStrWithError(dict, __pyx_n_s_init_subclass); jpayne@68: if (unlikely(meth)) { jpayne@68: descrgetfunc f = Py_TYPE(meth)->tp_descr_get; jpayne@68: PyObject *res; jpayne@68: Py_INCREF(meth); jpayne@68: if (likely(f)) { jpayne@68: res = f(meth, NULL, type_obj); jpayne@68: Py_DECREF(meth); jpayne@68: if (unlikely(!res)) goto bad; jpayne@68: meth = res; jpayne@68: } jpayne@68: res = __Pyx_PyObject_FastCallDict(meth, NULL, 0, mkw); jpayne@68: Py_DECREF(meth); jpayne@68: if (unlikely(!res)) goto bad; jpayne@68: Py_DECREF(res); jpayne@68: goto done; jpayne@68: } else if (unlikely(PyErr_Occurred())) { jpayne@68: goto bad; jpayne@68: } jpayne@68: } jpayne@68: done: jpayne@68: Py_XDECREF(mro); jpayne@68: return type_obj; jpayne@68: bad: jpayne@68: Py_XDECREF(mro); jpayne@68: Py_DECREF(type_obj); jpayne@68: return NULL; jpayne@68: #else jpayne@68: PyObject *super_type, *super, *func, *res; jpayne@68: #if CYTHON_COMPILING_IN_PYPY && !defined(PySuper_Type) jpayne@68: super_type = __Pyx_GetBuiltinName(__pyx_n_s_super); jpayne@68: #else jpayne@68: super_type = (PyObject*) &PySuper_Type; jpayne@68: (void) &__Pyx_GetBuiltinName; jpayne@68: #endif jpayne@68: super = likely(super_type) ? __Pyx_PyObject_Call2Args(super_type, type_obj, type_obj) : NULL; jpayne@68: #if CYTHON_COMPILING_IN_PYPY && !defined(PySuper_Type) jpayne@68: Py_XDECREF(super_type); jpayne@68: #endif jpayne@68: if (unlikely(!super)) { jpayne@68: Py_CLEAR(type_obj); jpayne@68: goto done; jpayne@68: } jpayne@68: func = __Pyx_PyObject_GetAttrStrNoError(super, __pyx_n_s_init_subclass); jpayne@68: Py_DECREF(super); jpayne@68: if (likely(!func)) { jpayne@68: if (unlikely(PyErr_Occurred())) jpayne@68: Py_CLEAR(type_obj); jpayne@68: goto done; jpayne@68: } jpayne@68: res = __Pyx_PyObject_FastCallDict(func, NULL, 0, mkw); jpayne@68: Py_DECREF(func); jpayne@68: if (unlikely(!res)) jpayne@68: Py_CLEAR(type_obj); jpayne@68: Py_XDECREF(res); jpayne@68: done: jpayne@68: return type_obj; jpayne@68: #endif jpayne@68: } jpayne@68: #endif jpayne@68: static PyObject *__Pyx_Py3ClassCreate(PyObject *metaclass, PyObject *name, PyObject *bases, jpayne@68: PyObject *dict, PyObject *mkw, jpayne@68: int calculate_metaclass, int allow_py2_metaclass) { jpayne@68: PyObject *result; jpayne@68: PyObject *owned_metaclass = NULL; jpayne@68: PyObject *margs[4] = {NULL, name, bases, dict}; jpayne@68: if (allow_py2_metaclass) { jpayne@68: owned_metaclass = PyObject_GetItem(dict, __pyx_n_s_metaclass); jpayne@68: if (owned_metaclass) { jpayne@68: metaclass = owned_metaclass; jpayne@68: } else if (likely(PyErr_ExceptionMatches(PyExc_KeyError))) { jpayne@68: PyErr_Clear(); jpayne@68: } else { jpayne@68: return NULL; jpayne@68: } jpayne@68: } jpayne@68: if (calculate_metaclass && (!metaclass || PyType_Check(metaclass))) { jpayne@68: metaclass = __Pyx_CalculateMetaclass((PyTypeObject*) metaclass, bases); jpayne@68: Py_XDECREF(owned_metaclass); jpayne@68: if (unlikely(!metaclass)) jpayne@68: return NULL; jpayne@68: owned_metaclass = metaclass; jpayne@68: } jpayne@68: result = __Pyx_PyObject_FastCallDict(metaclass, margs+1, 3 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET, jpayne@68: #if PY_VERSION_HEX < 0x030600A4 jpayne@68: (metaclass == (PyObject*)&PyType_Type) ? NULL : mkw jpayne@68: #else jpayne@68: mkw jpayne@68: #endif jpayne@68: ); jpayne@68: Py_XDECREF(owned_metaclass); jpayne@68: #if PY_VERSION_HEX < 0x030600A4 && CYTHON_PEP487_INIT_SUBCLASS jpayne@68: if (likely(result) && likely(PyType_Check(result))) { jpayne@68: if (unlikely(__Pyx_SetNamesPEP487(result) < 0)) { jpayne@68: Py_CLEAR(result); jpayne@68: } else { jpayne@68: result = __Pyx_InitSubclassPEP487(result, mkw); jpayne@68: } jpayne@68: } jpayne@68: #else jpayne@68: (void) &__Pyx_GetBuiltinName; jpayne@68: #endif jpayne@68: return result; jpayne@68: } jpayne@68: jpayne@68: /* CLineInTraceback */ jpayne@68: #ifndef CYTHON_CLINE_IN_TRACEBACK jpayne@68: static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line) { jpayne@68: PyObject *use_cline; jpayne@68: PyObject *ptype, *pvalue, *ptraceback; jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: PyObject **cython_runtime_dict; jpayne@68: #endif jpayne@68: CYTHON_MAYBE_UNUSED_VAR(tstate); jpayne@68: if (unlikely(!__pyx_cython_runtime)) { jpayne@68: return c_line; jpayne@68: } jpayne@68: __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback); jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime); jpayne@68: if (likely(cython_runtime_dict)) { jpayne@68: __PYX_PY_DICT_LOOKUP_IF_MODIFIED( jpayne@68: use_cline, *cython_runtime_dict, jpayne@68: __Pyx_PyDict_GetItemStr(*cython_runtime_dict, __pyx_n_s_cline_in_traceback)) jpayne@68: } else jpayne@68: #endif jpayne@68: { jpayne@68: PyObject *use_cline_obj = __Pyx_PyObject_GetAttrStrNoError(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback); jpayne@68: if (use_cline_obj) { jpayne@68: use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True; jpayne@68: Py_DECREF(use_cline_obj); jpayne@68: } else { jpayne@68: PyErr_Clear(); jpayne@68: use_cline = NULL; jpayne@68: } jpayne@68: } jpayne@68: if (!use_cline) { jpayne@68: c_line = 0; jpayne@68: (void) PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False); jpayne@68: } jpayne@68: else if (use_cline == Py_False || (use_cline != Py_True && PyObject_Not(use_cline) != 0)) { jpayne@68: c_line = 0; jpayne@68: } jpayne@68: __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback); jpayne@68: return c_line; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* CodeObjectCache */ jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { jpayne@68: int start = 0, mid = 0, end = count - 1; jpayne@68: if (end >= 0 && code_line > entries[end].code_line) { jpayne@68: return count; jpayne@68: } jpayne@68: while (start < end) { jpayne@68: mid = start + (end - start) / 2; jpayne@68: if (code_line < entries[mid].code_line) { jpayne@68: end = mid; jpayne@68: } else if (code_line > entries[mid].code_line) { jpayne@68: start = mid + 1; jpayne@68: } else { jpayne@68: return mid; jpayne@68: } jpayne@68: } jpayne@68: if (code_line <= entries[mid].code_line) { jpayne@68: return mid; jpayne@68: } else { jpayne@68: return mid + 1; jpayne@68: } jpayne@68: } jpayne@68: static PyCodeObject *__pyx_find_code_object(int code_line) { jpayne@68: PyCodeObject* code_object; jpayne@68: int pos; jpayne@68: if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { jpayne@68: return NULL; jpayne@68: } jpayne@68: pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); jpayne@68: if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { jpayne@68: return NULL; jpayne@68: } jpayne@68: code_object = __pyx_code_cache.entries[pos].code_object; jpayne@68: Py_INCREF(code_object); jpayne@68: return code_object; jpayne@68: } jpayne@68: static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { jpayne@68: int pos, i; jpayne@68: __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; jpayne@68: if (unlikely(!code_line)) { jpayne@68: return; jpayne@68: } jpayne@68: if (unlikely(!entries)) { jpayne@68: entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); jpayne@68: if (likely(entries)) { jpayne@68: __pyx_code_cache.entries = entries; jpayne@68: __pyx_code_cache.max_count = 64; jpayne@68: __pyx_code_cache.count = 1; jpayne@68: entries[0].code_line = code_line; jpayne@68: entries[0].code_object = code_object; jpayne@68: Py_INCREF(code_object); jpayne@68: } jpayne@68: return; jpayne@68: } jpayne@68: pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); jpayne@68: if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { jpayne@68: PyCodeObject* tmp = entries[pos].code_object; jpayne@68: entries[pos].code_object = code_object; jpayne@68: Py_DECREF(tmp); jpayne@68: return; jpayne@68: } jpayne@68: if (__pyx_code_cache.count == __pyx_code_cache.max_count) { jpayne@68: int new_max = __pyx_code_cache.max_count + 64; jpayne@68: entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( jpayne@68: __pyx_code_cache.entries, ((size_t)new_max) * sizeof(__Pyx_CodeObjectCacheEntry)); jpayne@68: if (unlikely(!entries)) { jpayne@68: return; jpayne@68: } jpayne@68: __pyx_code_cache.entries = entries; jpayne@68: __pyx_code_cache.max_count = new_max; jpayne@68: } jpayne@68: for (i=__pyx_code_cache.count; i>pos; i--) { jpayne@68: entries[i] = entries[i-1]; jpayne@68: } jpayne@68: entries[pos].code_line = code_line; jpayne@68: entries[pos].code_object = code_object; jpayne@68: __pyx_code_cache.count++; jpayne@68: Py_INCREF(code_object); jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* AddTraceback */ jpayne@68: #include "compile.h" jpayne@68: #include "frameobject.h" jpayne@68: #include "traceback.h" jpayne@68: #if PY_VERSION_HEX >= 0x030b00a6 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: #ifndef Py_BUILD_CORE jpayne@68: #define Py_BUILD_CORE 1 jpayne@68: #endif jpayne@68: #include "internal/pycore_frame.h" jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static PyObject *__Pyx_PyCode_Replace_For_AddTraceback(PyObject *code, PyObject *scratch_dict, jpayne@68: PyObject *firstlineno, PyObject *name) { jpayne@68: PyObject *replace = NULL; jpayne@68: if (unlikely(PyDict_SetItemString(scratch_dict, "co_firstlineno", firstlineno))) return NULL; jpayne@68: if (unlikely(PyDict_SetItemString(scratch_dict, "co_name", name))) return NULL; jpayne@68: replace = PyObject_GetAttrString(code, "replace"); jpayne@68: if (likely(replace)) { jpayne@68: PyObject *result; jpayne@68: result = PyObject_Call(replace, __pyx_empty_tuple, scratch_dict); jpayne@68: Py_DECREF(replace); jpayne@68: return result; jpayne@68: } jpayne@68: PyErr_Clear(); jpayne@68: #if __PYX_LIMITED_VERSION_HEX < 0x030780000 jpayne@68: { jpayne@68: PyObject *compiled = NULL, *result = NULL; jpayne@68: if (unlikely(PyDict_SetItemString(scratch_dict, "code", code))) return NULL; jpayne@68: if (unlikely(PyDict_SetItemString(scratch_dict, "type", (PyObject*)(&PyType_Type)))) return NULL; jpayne@68: compiled = Py_CompileString( jpayne@68: "out = type(code)(\n" jpayne@68: " code.co_argcount, code.co_kwonlyargcount, code.co_nlocals, code.co_stacksize,\n" jpayne@68: " code.co_flags, code.co_code, code.co_consts, code.co_names,\n" jpayne@68: " code.co_varnames, code.co_filename, co_name, co_firstlineno,\n" jpayne@68: " code.co_lnotab)\n", "", Py_file_input); jpayne@68: if (!compiled) return NULL; jpayne@68: result = PyEval_EvalCode(compiled, scratch_dict, scratch_dict); jpayne@68: Py_DECREF(compiled); jpayne@68: if (!result) PyErr_Print(); jpayne@68: Py_DECREF(result); jpayne@68: result = PyDict_GetItemString(scratch_dict, "out"); jpayne@68: if (result) Py_INCREF(result); jpayne@68: return result; jpayne@68: } jpayne@68: #else jpayne@68: return NULL; jpayne@68: #endif jpayne@68: } jpayne@68: static void __Pyx_AddTraceback(const char *funcname, int c_line, jpayne@68: int py_line, const char *filename) { jpayne@68: PyObject *code_object = NULL, *py_py_line = NULL, *py_funcname = NULL, *dict = NULL; jpayne@68: PyObject *replace = NULL, *getframe = NULL, *frame = NULL; jpayne@68: PyObject *exc_type, *exc_value, *exc_traceback; jpayne@68: int success = 0; jpayne@68: if (c_line) { jpayne@68: (void) __pyx_cfilenm; jpayne@68: (void) __Pyx_CLineForTraceback(__Pyx_PyThreadState_Current, c_line); jpayne@68: } jpayne@68: PyErr_Fetch(&exc_type, &exc_value, &exc_traceback); jpayne@68: code_object = Py_CompileString("_getframe()", filename, Py_eval_input); jpayne@68: if (unlikely(!code_object)) goto bad; jpayne@68: py_py_line = PyLong_FromLong(py_line); jpayne@68: if (unlikely(!py_py_line)) goto bad; jpayne@68: py_funcname = PyUnicode_FromString(funcname); jpayne@68: if (unlikely(!py_funcname)) goto bad; jpayne@68: dict = PyDict_New(); jpayne@68: if (unlikely(!dict)) goto bad; jpayne@68: { jpayne@68: PyObject *old_code_object = code_object; jpayne@68: code_object = __Pyx_PyCode_Replace_For_AddTraceback(code_object, dict, py_py_line, py_funcname); jpayne@68: Py_DECREF(old_code_object); jpayne@68: } jpayne@68: if (unlikely(!code_object)) goto bad; jpayne@68: getframe = PySys_GetObject("_getframe"); jpayne@68: if (unlikely(!getframe)) goto bad; jpayne@68: if (unlikely(PyDict_SetItemString(dict, "_getframe", getframe))) goto bad; jpayne@68: frame = PyEval_EvalCode(code_object, dict, dict); jpayne@68: if (unlikely(!frame) || frame == Py_None) goto bad; jpayne@68: success = 1; jpayne@68: bad: jpayne@68: PyErr_Restore(exc_type, exc_value, exc_traceback); jpayne@68: Py_XDECREF(code_object); jpayne@68: Py_XDECREF(py_py_line); jpayne@68: Py_XDECREF(py_funcname); jpayne@68: Py_XDECREF(dict); jpayne@68: Py_XDECREF(replace); jpayne@68: if (success) { jpayne@68: PyTraceBack_Here( jpayne@68: (struct _frame*)frame); jpayne@68: } jpayne@68: Py_XDECREF(frame); jpayne@68: } jpayne@68: #else jpayne@68: static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( jpayne@68: const char *funcname, int c_line, jpayne@68: int py_line, const char *filename) { jpayne@68: PyCodeObject *py_code = NULL; jpayne@68: PyObject *py_funcname = NULL; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: PyObject *py_srcfile = NULL; jpayne@68: py_srcfile = PyString_FromString(filename); jpayne@68: if (!py_srcfile) goto bad; jpayne@68: #endif jpayne@68: if (c_line) { jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); jpayne@68: if (!py_funcname) goto bad; jpayne@68: #else jpayne@68: py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); jpayne@68: if (!py_funcname) goto bad; jpayne@68: funcname = PyUnicode_AsUTF8(py_funcname); jpayne@68: if (!funcname) goto bad; jpayne@68: #endif jpayne@68: } jpayne@68: else { jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: py_funcname = PyString_FromString(funcname); jpayne@68: if (!py_funcname) goto bad; jpayne@68: #endif jpayne@68: } jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: py_code = __Pyx_PyCode_New( jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: 0, jpayne@68: __pyx_empty_bytes, /*PyObject *code,*/ jpayne@68: __pyx_empty_tuple, /*PyObject *consts,*/ jpayne@68: __pyx_empty_tuple, /*PyObject *names,*/ jpayne@68: __pyx_empty_tuple, /*PyObject *varnames,*/ jpayne@68: __pyx_empty_tuple, /*PyObject *freevars,*/ jpayne@68: __pyx_empty_tuple, /*PyObject *cellvars,*/ jpayne@68: py_srcfile, /*PyObject *filename,*/ jpayne@68: py_funcname, /*PyObject *name,*/ jpayne@68: py_line, jpayne@68: __pyx_empty_bytes /*PyObject *lnotab*/ jpayne@68: ); jpayne@68: Py_DECREF(py_srcfile); jpayne@68: #else jpayne@68: py_code = PyCode_NewEmpty(filename, funcname, py_line); jpayne@68: #endif jpayne@68: Py_XDECREF(py_funcname); jpayne@68: return py_code; jpayne@68: bad: jpayne@68: Py_XDECREF(py_funcname); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: Py_XDECREF(py_srcfile); jpayne@68: #endif jpayne@68: return NULL; jpayne@68: } jpayne@68: static void __Pyx_AddTraceback(const char *funcname, int c_line, jpayne@68: int py_line, const char *filename) { jpayne@68: PyCodeObject *py_code = 0; jpayne@68: PyFrameObject *py_frame = 0; jpayne@68: PyThreadState *tstate = __Pyx_PyThreadState_Current; jpayne@68: PyObject *ptype, *pvalue, *ptraceback; jpayne@68: if (c_line) { jpayne@68: c_line = __Pyx_CLineForTraceback(tstate, c_line); jpayne@68: } jpayne@68: py_code = __pyx_find_code_object(c_line ? -c_line : py_line); jpayne@68: if (!py_code) { jpayne@68: __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback); jpayne@68: py_code = __Pyx_CreateCodeObjectForTraceback( jpayne@68: funcname, c_line, py_line, filename); jpayne@68: if (!py_code) { jpayne@68: /* If the code object creation fails, then we should clear the jpayne@68: fetched exception references and propagate the new exception */ jpayne@68: Py_XDECREF(ptype); jpayne@68: Py_XDECREF(pvalue); jpayne@68: Py_XDECREF(ptraceback); jpayne@68: goto bad; jpayne@68: } jpayne@68: __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback); jpayne@68: __pyx_insert_code_object(c_line ? -c_line : py_line, py_code); jpayne@68: } jpayne@68: py_frame = PyFrame_New( jpayne@68: tstate, /*PyThreadState *tstate,*/ jpayne@68: py_code, /*PyCodeObject *code,*/ jpayne@68: __pyx_d, /*PyObject *globals,*/ jpayne@68: 0 /*PyObject *locals*/ jpayne@68: ); jpayne@68: if (!py_frame) goto bad; jpayne@68: __Pyx_PyFrame_SetLineNumber(py_frame, py_line); jpayne@68: PyTraceBack_Here(py_frame); jpayne@68: bad: jpayne@68: Py_XDECREF(py_code); jpayne@68: Py_XDECREF(py_frame); jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* CIntFromPyVerify */ jpayne@68: #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ jpayne@68: __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) jpayne@68: #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ jpayne@68: __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) jpayne@68: #define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\ jpayne@68: {\ jpayne@68: func_type value = func_value;\ jpayne@68: if (sizeof(target_type) < sizeof(func_type)) {\ jpayne@68: if (unlikely(value != (func_type) (target_type) value)) {\ jpayne@68: func_type zero = 0;\ jpayne@68: if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\ jpayne@68: return (target_type) -1;\ jpayne@68: if (is_unsigned && unlikely(value < zero))\ jpayne@68: goto raise_neg_overflow;\ jpayne@68: else\ jpayne@68: goto raise_overflow;\ jpayne@68: }\ jpayne@68: }\ jpayne@68: return (target_type) value;\ jpayne@68: } jpayne@68: jpayne@68: /* CIntFromPy */ jpayne@68: static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const int neg_one = (int) -1, const_zero = (int) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(PyInt_Check(x))) { jpayne@68: if ((sizeof(int) < sizeof(long))) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x)) jpayne@68: } else { jpayne@68: long val = PyInt_AS_LONG(x); jpayne@68: if (is_unsigned && unlikely(val < 0)) { jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: return (int) val; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: if (unlikely(!PyLong_Check(x))) { jpayne@68: int val; jpayne@68: PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); jpayne@68: if (!tmp) return (int) -1; jpayne@68: val = __Pyx_PyInt_As_int(tmp); jpayne@68: Py_DECREF(tmp); jpayne@68: return val; jpayne@68: } jpayne@68: if (is_unsigned) { jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (unlikely(__Pyx_PyLong_IsNeg(x))) { jpayne@68: goto raise_neg_overflow; jpayne@68: } else if (__Pyx_PyLong_IsCompact(x)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@68: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@68: switch (__Pyx_PyLong_DigitCount(x)) { jpayne@68: case 2: jpayne@68: if ((8 * sizeof(int) > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int) >= 2 * PyLong_SHIFT)) { jpayne@68: return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 3: jpayne@68: if ((8 * sizeof(int) > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int) >= 3 * PyLong_SHIFT)) { jpayne@68: return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 4: jpayne@68: if ((8 * sizeof(int) > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int) >= 4 * PyLong_SHIFT)) { jpayne@68: return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 jpayne@68: if (unlikely(Py_SIZE(x) < 0)) { jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: #else jpayne@68: { jpayne@68: int result = PyObject_RichCompareBool(x, Py_False, Py_LT); jpayne@68: if (unlikely(result < 0)) jpayne@68: return (int) -1; jpayne@68: if (unlikely(result == 1)) jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: #endif jpayne@68: if ((sizeof(int) <= sizeof(unsigned long))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x)) jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if ((sizeof(int) <= sizeof(unsigned PY_LONG_LONG))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (__Pyx_PyLong_IsCompact(x)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@68: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@68: switch (__Pyx_PyLong_SignedDigitCount(x)) { jpayne@68: case -2: jpayne@68: if ((8 * sizeof(int) - 1 > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 2: jpayne@68: if ((8 * sizeof(int) > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case -3: jpayne@68: if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 3: jpayne@68: if ((8 * sizeof(int) > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case -4: jpayne@68: if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int) - 1 > 4 * PyLong_SHIFT)) { jpayne@68: return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 4: jpayne@68: if ((8 * sizeof(int) > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int) - 1 > 4 * PyLong_SHIFT)) { jpayne@68: return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: if ((sizeof(int) <= sizeof(long))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x)) jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if ((sizeof(int) <= sizeof(PY_LONG_LONG))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x)) jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: int val; jpayne@68: int ret = -1; jpayne@68: #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: Py_ssize_t bytes_copied = PyLong_AsNativeBytes( jpayne@68: x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); jpayne@68: if (unlikely(bytes_copied == -1)) { jpayne@68: } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { jpayne@68: goto raise_overflow; jpayne@68: } else { jpayne@68: ret = 0; jpayne@68: } jpayne@68: #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) jpayne@68: int one = 1; int is_little = (int)*(unsigned char *)&one; jpayne@68: unsigned char *bytes = (unsigned char *)&val; jpayne@68: ret = _PyLong_AsByteArray((PyLongObject *)x, jpayne@68: bytes, sizeof(val), jpayne@68: is_little, !is_unsigned); jpayne@68: #else jpayne@68: PyObject *v; jpayne@68: PyObject *stepval = NULL, *mask = NULL, *shift = NULL; jpayne@68: int bits, remaining_bits, is_negative = 0; jpayne@68: int chunk_size = (sizeof(long) < 8) ? 30 : 62; jpayne@68: if (likely(PyLong_CheckExact(x))) { jpayne@68: v = __Pyx_NewRef(x); jpayne@68: } else { jpayne@68: v = PyNumber_Long(x); jpayne@68: if (unlikely(!v)) return (int) -1; jpayne@68: assert(PyLong_CheckExact(v)); jpayne@68: } jpayne@68: { jpayne@68: int result = PyObject_RichCompareBool(v, Py_False, Py_LT); jpayne@68: if (unlikely(result < 0)) { jpayne@68: Py_DECREF(v); jpayne@68: return (int) -1; jpayne@68: } jpayne@68: is_negative = result == 1; jpayne@68: } jpayne@68: if (is_unsigned && unlikely(is_negative)) { jpayne@68: Py_DECREF(v); jpayne@68: goto raise_neg_overflow; jpayne@68: } else if (is_negative) { jpayne@68: stepval = PyNumber_Invert(v); jpayne@68: Py_DECREF(v); jpayne@68: if (unlikely(!stepval)) jpayne@68: return (int) -1; jpayne@68: } else { jpayne@68: stepval = v; jpayne@68: } jpayne@68: v = NULL; jpayne@68: val = (int) 0; jpayne@68: mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; jpayne@68: shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; jpayne@68: for (bits = 0; bits < (int) sizeof(int) * 8 - chunk_size; bits += chunk_size) { jpayne@68: PyObject *tmp, *digit; jpayne@68: long idigit; jpayne@68: digit = PyNumber_And(stepval, mask); jpayne@68: if (unlikely(!digit)) goto done; jpayne@68: idigit = PyLong_AsLong(digit); jpayne@68: Py_DECREF(digit); jpayne@68: if (unlikely(idigit < 0)) goto done; jpayne@68: val |= ((int) idigit) << bits; jpayne@68: tmp = PyNumber_Rshift(stepval, shift); jpayne@68: if (unlikely(!tmp)) goto done; jpayne@68: Py_DECREF(stepval); stepval = tmp; jpayne@68: } jpayne@68: Py_DECREF(shift); shift = NULL; jpayne@68: Py_DECREF(mask); mask = NULL; jpayne@68: { jpayne@68: long idigit = PyLong_AsLong(stepval); jpayne@68: if (unlikely(idigit < 0)) goto done; jpayne@68: remaining_bits = ((int) sizeof(int) * 8) - bits - (is_unsigned ? 0 : 1); jpayne@68: if (unlikely(idigit >= (1L << remaining_bits))) jpayne@68: goto raise_overflow; jpayne@68: val |= ((int) idigit) << bits; jpayne@68: } jpayne@68: if (!is_unsigned) { jpayne@68: if (unlikely(val & (((int) 1) << (sizeof(int) * 8 - 1)))) jpayne@68: goto raise_overflow; jpayne@68: if (is_negative) jpayne@68: val = ~val; jpayne@68: } jpayne@68: ret = 0; jpayne@68: done: jpayne@68: Py_XDECREF(shift); jpayne@68: Py_XDECREF(mask); jpayne@68: Py_XDECREF(stepval); jpayne@68: #endif jpayne@68: if (unlikely(ret)) jpayne@68: return (int) -1; jpayne@68: return val; jpayne@68: } jpayne@68: raise_overflow: jpayne@68: PyErr_SetString(PyExc_OverflowError, jpayne@68: "value too large to convert to int"); jpayne@68: return (int) -1; jpayne@68: raise_neg_overflow: jpayne@68: PyErr_SetString(PyExc_OverflowError, jpayne@68: "can't convert negative value to int"); jpayne@68: return (int) -1; jpayne@68: } jpayne@68: jpayne@68: /* CIntToPy */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const int neg_one = (int) -1, const_zero = (int) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: if (is_unsigned) { jpayne@68: if (sizeof(int) < sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: } else if (sizeof(int) <= sizeof(unsigned long)) { jpayne@68: return PyLong_FromUnsignedLong((unsigned long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { jpayne@68: return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: if (sizeof(int) <= sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { jpayne@68: return PyLong_FromLongLong((PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: unsigned char *bytes = (unsigned char *)&value; jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 jpayne@68: if (is_unsigned) { jpayne@68: return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); jpayne@68: } else { jpayne@68: return PyLong_FromNativeBytes(bytes, sizeof(value), -1); jpayne@68: } jpayne@68: #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: return _PyLong_FromByteArray(bytes, sizeof(int), jpayne@68: little, !is_unsigned); jpayne@68: #else jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: PyObject *from_bytes, *result = NULL; jpayne@68: PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; jpayne@68: from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); jpayne@68: if (!from_bytes) return NULL; jpayne@68: py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(int)); jpayne@68: if (!py_bytes) goto limited_bad; jpayne@68: order_str = PyUnicode_FromString(little ? "little" : "big"); jpayne@68: if (!order_str) goto limited_bad; jpayne@68: arg_tuple = PyTuple_Pack(2, py_bytes, order_str); jpayne@68: if (!arg_tuple) goto limited_bad; jpayne@68: if (!is_unsigned) { jpayne@68: kwds = PyDict_New(); jpayne@68: if (!kwds) goto limited_bad; jpayne@68: if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; jpayne@68: } jpayne@68: result = PyObject_Call(from_bytes, arg_tuple, kwds); jpayne@68: limited_bad: jpayne@68: Py_XDECREF(kwds); jpayne@68: Py_XDECREF(arg_tuple); jpayne@68: Py_XDECREF(order_str); jpayne@68: Py_XDECREF(py_bytes); jpayne@68: Py_XDECREF(from_bytes); jpayne@68: return result; jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* CIntFromPy */ jpayne@68: static CYTHON_INLINE uint64_t __Pyx_PyInt_As_uint64_t(PyObject *x) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const uint64_t neg_one = (uint64_t) -1, const_zero = (uint64_t) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(PyInt_Check(x))) { jpayne@68: if ((sizeof(uint64_t) < sizeof(long))) { jpayne@68: __PYX_VERIFY_RETURN_INT(uint64_t, long, PyInt_AS_LONG(x)) jpayne@68: } else { jpayne@68: long val = PyInt_AS_LONG(x); jpayne@68: if (is_unsigned && unlikely(val < 0)) { jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: return (uint64_t) val; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: if (unlikely(!PyLong_Check(x))) { jpayne@68: uint64_t val; jpayne@68: PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); jpayne@68: if (!tmp) return (uint64_t) -1; jpayne@68: val = __Pyx_PyInt_As_uint64_t(tmp); jpayne@68: Py_DECREF(tmp); jpayne@68: return val; jpayne@68: } jpayne@68: if (is_unsigned) { jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (unlikely(__Pyx_PyLong_IsNeg(x))) { jpayne@68: goto raise_neg_overflow; jpayne@68: } else if (__Pyx_PyLong_IsCompact(x)) { jpayne@68: __PYX_VERIFY_RETURN_INT(uint64_t, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@68: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@68: switch (__Pyx_PyLong_DigitCount(x)) { jpayne@68: case 2: jpayne@68: if ((8 * sizeof(uint64_t) > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(uint64_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(uint64_t) >= 2 * PyLong_SHIFT)) { jpayne@68: return (uint64_t) (((((uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 3: jpayne@68: if ((8 * sizeof(uint64_t) > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(uint64_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(uint64_t) >= 3 * PyLong_SHIFT)) { jpayne@68: return (uint64_t) (((((((uint64_t)digits[2]) << PyLong_SHIFT) | (uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 4: jpayne@68: if ((8 * sizeof(uint64_t) > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(uint64_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(uint64_t) >= 4 * PyLong_SHIFT)) { jpayne@68: return (uint64_t) (((((((((uint64_t)digits[3]) << PyLong_SHIFT) | (uint64_t)digits[2]) << PyLong_SHIFT) | (uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 jpayne@68: if (unlikely(Py_SIZE(x) < 0)) { jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: #else jpayne@68: { jpayne@68: int result = PyObject_RichCompareBool(x, Py_False, Py_LT); jpayne@68: if (unlikely(result < 0)) jpayne@68: return (uint64_t) -1; jpayne@68: if (unlikely(result == 1)) jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: #endif jpayne@68: if ((sizeof(uint64_t) <= sizeof(unsigned long))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(uint64_t, unsigned long, PyLong_AsUnsignedLong(x)) jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if ((sizeof(uint64_t) <= sizeof(unsigned PY_LONG_LONG))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(uint64_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (__Pyx_PyLong_IsCompact(x)) { jpayne@68: __PYX_VERIFY_RETURN_INT(uint64_t, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@68: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@68: switch (__Pyx_PyLong_SignedDigitCount(x)) { jpayne@68: case -2: jpayne@68: if ((8 * sizeof(uint64_t) - 1 > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(uint64_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(uint64_t) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: return (uint64_t) (((uint64_t)-1)*(((((uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 2: jpayne@68: if ((8 * sizeof(uint64_t) > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(uint64_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(uint64_t) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: return (uint64_t) ((((((uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case -3: jpayne@68: if ((8 * sizeof(uint64_t) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(uint64_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(uint64_t) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: return (uint64_t) (((uint64_t)-1)*(((((((uint64_t)digits[2]) << PyLong_SHIFT) | (uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 3: jpayne@68: if ((8 * sizeof(uint64_t) > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(uint64_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(uint64_t) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: return (uint64_t) ((((((((uint64_t)digits[2]) << PyLong_SHIFT) | (uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case -4: jpayne@68: if ((8 * sizeof(uint64_t) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(uint64_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(uint64_t) - 1 > 4 * PyLong_SHIFT)) { jpayne@68: return (uint64_t) (((uint64_t)-1)*(((((((((uint64_t)digits[3]) << PyLong_SHIFT) | (uint64_t)digits[2]) << PyLong_SHIFT) | (uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 4: jpayne@68: if ((8 * sizeof(uint64_t) > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(uint64_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(uint64_t) - 1 > 4 * PyLong_SHIFT)) { jpayne@68: return (uint64_t) ((((((((((uint64_t)digits[3]) << PyLong_SHIFT) | (uint64_t)digits[2]) << PyLong_SHIFT) | (uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: if ((sizeof(uint64_t) <= sizeof(long))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(uint64_t, long, PyLong_AsLong(x)) jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if ((sizeof(uint64_t) <= sizeof(PY_LONG_LONG))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(uint64_t, PY_LONG_LONG, PyLong_AsLongLong(x)) jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: uint64_t val; jpayne@68: int ret = -1; jpayne@68: #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: Py_ssize_t bytes_copied = PyLong_AsNativeBytes( jpayne@68: x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); jpayne@68: if (unlikely(bytes_copied == -1)) { jpayne@68: } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { jpayne@68: goto raise_overflow; jpayne@68: } else { jpayne@68: ret = 0; jpayne@68: } jpayne@68: #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) jpayne@68: int one = 1; int is_little = (int)*(unsigned char *)&one; jpayne@68: unsigned char *bytes = (unsigned char *)&val; jpayne@68: ret = _PyLong_AsByteArray((PyLongObject *)x, jpayne@68: bytes, sizeof(val), jpayne@68: is_little, !is_unsigned); jpayne@68: #else jpayne@68: PyObject *v; jpayne@68: PyObject *stepval = NULL, *mask = NULL, *shift = NULL; jpayne@68: int bits, remaining_bits, is_negative = 0; jpayne@68: int chunk_size = (sizeof(long) < 8) ? 30 : 62; jpayne@68: if (likely(PyLong_CheckExact(x))) { jpayne@68: v = __Pyx_NewRef(x); jpayne@68: } else { jpayne@68: v = PyNumber_Long(x); jpayne@68: if (unlikely(!v)) return (uint64_t) -1; jpayne@68: assert(PyLong_CheckExact(v)); jpayne@68: } jpayne@68: { jpayne@68: int result = PyObject_RichCompareBool(v, Py_False, Py_LT); jpayne@68: if (unlikely(result < 0)) { jpayne@68: Py_DECREF(v); jpayne@68: return (uint64_t) -1; jpayne@68: } jpayne@68: is_negative = result == 1; jpayne@68: } jpayne@68: if (is_unsigned && unlikely(is_negative)) { jpayne@68: Py_DECREF(v); jpayne@68: goto raise_neg_overflow; jpayne@68: } else if (is_negative) { jpayne@68: stepval = PyNumber_Invert(v); jpayne@68: Py_DECREF(v); jpayne@68: if (unlikely(!stepval)) jpayne@68: return (uint64_t) -1; jpayne@68: } else { jpayne@68: stepval = v; jpayne@68: } jpayne@68: v = NULL; jpayne@68: val = (uint64_t) 0; jpayne@68: mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; jpayne@68: shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; jpayne@68: for (bits = 0; bits < (int) sizeof(uint64_t) * 8 - chunk_size; bits += chunk_size) { jpayne@68: PyObject *tmp, *digit; jpayne@68: long idigit; jpayne@68: digit = PyNumber_And(stepval, mask); jpayne@68: if (unlikely(!digit)) goto done; jpayne@68: idigit = PyLong_AsLong(digit); jpayne@68: Py_DECREF(digit); jpayne@68: if (unlikely(idigit < 0)) goto done; jpayne@68: val |= ((uint64_t) idigit) << bits; jpayne@68: tmp = PyNumber_Rshift(stepval, shift); jpayne@68: if (unlikely(!tmp)) goto done; jpayne@68: Py_DECREF(stepval); stepval = tmp; jpayne@68: } jpayne@68: Py_DECREF(shift); shift = NULL; jpayne@68: Py_DECREF(mask); mask = NULL; jpayne@68: { jpayne@68: long idigit = PyLong_AsLong(stepval); jpayne@68: if (unlikely(idigit < 0)) goto done; jpayne@68: remaining_bits = ((int) sizeof(uint64_t) * 8) - bits - (is_unsigned ? 0 : 1); jpayne@68: if (unlikely(idigit >= (1L << remaining_bits))) jpayne@68: goto raise_overflow; jpayne@68: val |= ((uint64_t) idigit) << bits; jpayne@68: } jpayne@68: if (!is_unsigned) { jpayne@68: if (unlikely(val & (((uint64_t) 1) << (sizeof(uint64_t) * 8 - 1)))) jpayne@68: goto raise_overflow; jpayne@68: if (is_negative) jpayne@68: val = ~val; jpayne@68: } jpayne@68: ret = 0; jpayne@68: done: jpayne@68: Py_XDECREF(shift); jpayne@68: Py_XDECREF(mask); jpayne@68: Py_XDECREF(stepval); jpayne@68: #endif jpayne@68: if (unlikely(ret)) jpayne@68: return (uint64_t) -1; jpayne@68: return val; jpayne@68: } jpayne@68: raise_overflow: jpayne@68: PyErr_SetString(PyExc_OverflowError, jpayne@68: "value too large to convert to uint64_t"); jpayne@68: return (uint64_t) -1; jpayne@68: raise_neg_overflow: jpayne@68: PyErr_SetString(PyExc_OverflowError, jpayne@68: "can't convert negative value to uint64_t"); jpayne@68: return (uint64_t) -1; jpayne@68: } jpayne@68: jpayne@68: /* CIntToPy */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_off_t(off_t value) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const off_t neg_one = (off_t) -1, const_zero = (off_t) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: if (is_unsigned) { jpayne@68: if (sizeof(off_t) < sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: } else if (sizeof(off_t) <= sizeof(unsigned long)) { jpayne@68: return PyLong_FromUnsignedLong((unsigned long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(off_t) <= sizeof(unsigned PY_LONG_LONG)) { jpayne@68: return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: if (sizeof(off_t) <= sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(off_t) <= sizeof(PY_LONG_LONG)) { jpayne@68: return PyLong_FromLongLong((PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: unsigned char *bytes = (unsigned char *)&value; jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 jpayne@68: if (is_unsigned) { jpayne@68: return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); jpayne@68: } else { jpayne@68: return PyLong_FromNativeBytes(bytes, sizeof(value), -1); jpayne@68: } jpayne@68: #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: return _PyLong_FromByteArray(bytes, sizeof(off_t), jpayne@68: little, !is_unsigned); jpayne@68: #else jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: PyObject *from_bytes, *result = NULL; jpayne@68: PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; jpayne@68: from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); jpayne@68: if (!from_bytes) return NULL; jpayne@68: py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(off_t)); jpayne@68: if (!py_bytes) goto limited_bad; jpayne@68: order_str = PyUnicode_FromString(little ? "little" : "big"); jpayne@68: if (!order_str) goto limited_bad; jpayne@68: arg_tuple = PyTuple_Pack(2, py_bytes, order_str); jpayne@68: if (!arg_tuple) goto limited_bad; jpayne@68: if (!is_unsigned) { jpayne@68: kwds = PyDict_New(); jpayne@68: if (!kwds) goto limited_bad; jpayne@68: if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; jpayne@68: } jpayne@68: result = PyObject_Call(from_bytes, arg_tuple, kwds); jpayne@68: limited_bad: jpayne@68: Py_XDECREF(kwds); jpayne@68: Py_XDECREF(arg_tuple); jpayne@68: Py_XDECREF(order_str); jpayne@68: Py_XDECREF(py_bytes); jpayne@68: Py_XDECREF(from_bytes); jpayne@68: return result; jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* CIntToPy */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__htsFormatCategory(enum htsFormatCategory value) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const enum htsFormatCategory neg_one = (enum htsFormatCategory) -1, const_zero = (enum htsFormatCategory) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: if (is_unsigned) { jpayne@68: if (sizeof(enum htsFormatCategory) < sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: } else if (sizeof(enum htsFormatCategory) <= sizeof(unsigned long)) { jpayne@68: return PyLong_FromUnsignedLong((unsigned long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(enum htsFormatCategory) <= sizeof(unsigned PY_LONG_LONG)) { jpayne@68: return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: if (sizeof(enum htsFormatCategory) <= sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(enum htsFormatCategory) <= sizeof(PY_LONG_LONG)) { jpayne@68: return PyLong_FromLongLong((PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: unsigned char *bytes = (unsigned char *)&value; jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 jpayne@68: if (is_unsigned) { jpayne@68: return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); jpayne@68: } else { jpayne@68: return PyLong_FromNativeBytes(bytes, sizeof(value), -1); jpayne@68: } jpayne@68: #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: return _PyLong_FromByteArray(bytes, sizeof(enum htsFormatCategory), jpayne@68: little, !is_unsigned); jpayne@68: #else jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: PyObject *from_bytes, *result = NULL; jpayne@68: PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; jpayne@68: from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); jpayne@68: if (!from_bytes) return NULL; jpayne@68: py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(enum htsFormatCategory)); jpayne@68: if (!py_bytes) goto limited_bad; jpayne@68: order_str = PyUnicode_FromString(little ? "little" : "big"); jpayne@68: if (!order_str) goto limited_bad; jpayne@68: arg_tuple = PyTuple_Pack(2, py_bytes, order_str); jpayne@68: if (!arg_tuple) goto limited_bad; jpayne@68: if (!is_unsigned) { jpayne@68: kwds = PyDict_New(); jpayne@68: if (!kwds) goto limited_bad; jpayne@68: if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; jpayne@68: } jpayne@68: result = PyObject_Call(from_bytes, arg_tuple, kwds); jpayne@68: limited_bad: jpayne@68: Py_XDECREF(kwds); jpayne@68: Py_XDECREF(arg_tuple); jpayne@68: Py_XDECREF(order_str); jpayne@68: Py_XDECREF(py_bytes); jpayne@68: Py_XDECREF(from_bytes); jpayne@68: return result; jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* CIntToPy */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__htsExactFormat(enum htsExactFormat value) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const enum htsExactFormat neg_one = (enum htsExactFormat) -1, const_zero = (enum htsExactFormat) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: if (is_unsigned) { jpayne@68: if (sizeof(enum htsExactFormat) < sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: } else if (sizeof(enum htsExactFormat) <= sizeof(unsigned long)) { jpayne@68: return PyLong_FromUnsignedLong((unsigned long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(enum htsExactFormat) <= sizeof(unsigned PY_LONG_LONG)) { jpayne@68: return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: if (sizeof(enum htsExactFormat) <= sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(enum htsExactFormat) <= sizeof(PY_LONG_LONG)) { jpayne@68: return PyLong_FromLongLong((PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: unsigned char *bytes = (unsigned char *)&value; jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 jpayne@68: if (is_unsigned) { jpayne@68: return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); jpayne@68: } else { jpayne@68: return PyLong_FromNativeBytes(bytes, sizeof(value), -1); jpayne@68: } jpayne@68: #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: return _PyLong_FromByteArray(bytes, sizeof(enum htsExactFormat), jpayne@68: little, !is_unsigned); jpayne@68: #else jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: PyObject *from_bytes, *result = NULL; jpayne@68: PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; jpayne@68: from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); jpayne@68: if (!from_bytes) return NULL; jpayne@68: py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(enum htsExactFormat)); jpayne@68: if (!py_bytes) goto limited_bad; jpayne@68: order_str = PyUnicode_FromString(little ? "little" : "big"); jpayne@68: if (!order_str) goto limited_bad; jpayne@68: arg_tuple = PyTuple_Pack(2, py_bytes, order_str); jpayne@68: if (!arg_tuple) goto limited_bad; jpayne@68: if (!is_unsigned) { jpayne@68: kwds = PyDict_New(); jpayne@68: if (!kwds) goto limited_bad; jpayne@68: if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; jpayne@68: } jpayne@68: result = PyObject_Call(from_bytes, arg_tuple, kwds); jpayne@68: limited_bad: jpayne@68: Py_XDECREF(kwds); jpayne@68: Py_XDECREF(arg_tuple); jpayne@68: Py_XDECREF(order_str); jpayne@68: Py_XDECREF(py_bytes); jpayne@68: Py_XDECREF(from_bytes); jpayne@68: return result; jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* CIntToPy */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_short(short value) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const short neg_one = (short) -1, const_zero = (short) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: if (is_unsigned) { jpayne@68: if (sizeof(short) < sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: } else if (sizeof(short) <= sizeof(unsigned long)) { jpayne@68: return PyLong_FromUnsignedLong((unsigned long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(short) <= sizeof(unsigned PY_LONG_LONG)) { jpayne@68: return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: if (sizeof(short) <= sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(short) <= sizeof(PY_LONG_LONG)) { jpayne@68: return PyLong_FromLongLong((PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: unsigned char *bytes = (unsigned char *)&value; jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 jpayne@68: if (is_unsigned) { jpayne@68: return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); jpayne@68: } else { jpayne@68: return PyLong_FromNativeBytes(bytes, sizeof(value), -1); jpayne@68: } jpayne@68: #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: return _PyLong_FromByteArray(bytes, sizeof(short), jpayne@68: little, !is_unsigned); jpayne@68: #else jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: PyObject *from_bytes, *result = NULL; jpayne@68: PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; jpayne@68: from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); jpayne@68: if (!from_bytes) return NULL; jpayne@68: py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(short)); jpayne@68: if (!py_bytes) goto limited_bad; jpayne@68: order_str = PyUnicode_FromString(little ? "little" : "big"); jpayne@68: if (!order_str) goto limited_bad; jpayne@68: arg_tuple = PyTuple_Pack(2, py_bytes, order_str); jpayne@68: if (!arg_tuple) goto limited_bad; jpayne@68: if (!is_unsigned) { jpayne@68: kwds = PyDict_New(); jpayne@68: if (!kwds) goto limited_bad; jpayne@68: if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; jpayne@68: } jpayne@68: result = PyObject_Call(from_bytes, arg_tuple, kwds); jpayne@68: limited_bad: jpayne@68: Py_XDECREF(kwds); jpayne@68: Py_XDECREF(arg_tuple); jpayne@68: Py_XDECREF(order_str); jpayne@68: Py_XDECREF(py_bytes); jpayne@68: Py_XDECREF(from_bytes); jpayne@68: return result; jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* CIntToPy */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__htsCompression(enum htsCompression value) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const enum htsCompression neg_one = (enum htsCompression) -1, const_zero = (enum htsCompression) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: if (is_unsigned) { jpayne@68: if (sizeof(enum htsCompression) < sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: } else if (sizeof(enum htsCompression) <= sizeof(unsigned long)) { jpayne@68: return PyLong_FromUnsignedLong((unsigned long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(enum htsCompression) <= sizeof(unsigned PY_LONG_LONG)) { jpayne@68: return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: if (sizeof(enum htsCompression) <= sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(enum htsCompression) <= sizeof(PY_LONG_LONG)) { jpayne@68: return PyLong_FromLongLong((PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: unsigned char *bytes = (unsigned char *)&value; jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 jpayne@68: if (is_unsigned) { jpayne@68: return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); jpayne@68: } else { jpayne@68: return PyLong_FromNativeBytes(bytes, sizeof(value), -1); jpayne@68: } jpayne@68: #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: return _PyLong_FromByteArray(bytes, sizeof(enum htsCompression), jpayne@68: little, !is_unsigned); jpayne@68: #else jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: PyObject *from_bytes, *result = NULL; jpayne@68: PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; jpayne@68: from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); jpayne@68: if (!from_bytes) return NULL; jpayne@68: py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(enum htsCompression)); jpayne@68: if (!py_bytes) goto limited_bad; jpayne@68: order_str = PyUnicode_FromString(little ? "little" : "big"); jpayne@68: if (!order_str) goto limited_bad; jpayne@68: arg_tuple = PyTuple_Pack(2, py_bytes, order_str); jpayne@68: if (!arg_tuple) goto limited_bad; jpayne@68: if (!is_unsigned) { jpayne@68: kwds = PyDict_New(); jpayne@68: if (!kwds) goto limited_bad; jpayne@68: if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; jpayne@68: } jpayne@68: result = PyObject_Call(from_bytes, arg_tuple, kwds); jpayne@68: limited_bad: jpayne@68: Py_XDECREF(kwds); jpayne@68: Py_XDECREF(arg_tuple); jpayne@68: Py_XDECREF(order_str); jpayne@68: Py_XDECREF(py_bytes); jpayne@68: Py_XDECREF(from_bytes); jpayne@68: return result; jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* CIntToPy */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int64_t(int64_t value) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const int64_t neg_one = (int64_t) -1, const_zero = (int64_t) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: if (is_unsigned) { jpayne@68: if (sizeof(int64_t) < sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: } else if (sizeof(int64_t) <= sizeof(unsigned long)) { jpayne@68: return PyLong_FromUnsignedLong((unsigned long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(int64_t) <= sizeof(unsigned PY_LONG_LONG)) { jpayne@68: return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: if (sizeof(int64_t) <= sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(int64_t) <= sizeof(PY_LONG_LONG)) { jpayne@68: return PyLong_FromLongLong((PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: unsigned char *bytes = (unsigned char *)&value; jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 jpayne@68: if (is_unsigned) { jpayne@68: return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); jpayne@68: } else { jpayne@68: return PyLong_FromNativeBytes(bytes, sizeof(value), -1); jpayne@68: } jpayne@68: #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: return _PyLong_FromByteArray(bytes, sizeof(int64_t), jpayne@68: little, !is_unsigned); jpayne@68: #else jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: PyObject *from_bytes, *result = NULL; jpayne@68: PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; jpayne@68: from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); jpayne@68: if (!from_bytes) return NULL; jpayne@68: py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(int64_t)); jpayne@68: if (!py_bytes) goto limited_bad; jpayne@68: order_str = PyUnicode_FromString(little ? "little" : "big"); jpayne@68: if (!order_str) goto limited_bad; jpayne@68: arg_tuple = PyTuple_Pack(2, py_bytes, order_str); jpayne@68: if (!arg_tuple) goto limited_bad; jpayne@68: if (!is_unsigned) { jpayne@68: kwds = PyDict_New(); jpayne@68: if (!kwds) goto limited_bad; jpayne@68: if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; jpayne@68: } jpayne@68: result = PyObject_Call(from_bytes, arg_tuple, kwds); jpayne@68: limited_bad: jpayne@68: Py_XDECREF(kwds); jpayne@68: Py_XDECREF(arg_tuple); jpayne@68: Py_XDECREF(order_str); jpayne@68: Py_XDECREF(py_bytes); jpayne@68: Py_XDECREF(from_bytes); jpayne@68: return result; jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* CIntFromPy */ jpayne@68: static CYTHON_INLINE int32_t __Pyx_PyInt_As_int32_t(PyObject *x) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const int32_t neg_one = (int32_t) -1, const_zero = (int32_t) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(PyInt_Check(x))) { jpayne@68: if ((sizeof(int32_t) < sizeof(long))) { jpayne@68: __PYX_VERIFY_RETURN_INT(int32_t, long, PyInt_AS_LONG(x)) jpayne@68: } else { jpayne@68: long val = PyInt_AS_LONG(x); jpayne@68: if (is_unsigned && unlikely(val < 0)) { jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: return (int32_t) val; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: if (unlikely(!PyLong_Check(x))) { jpayne@68: int32_t val; jpayne@68: PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); jpayne@68: if (!tmp) return (int32_t) -1; jpayne@68: val = __Pyx_PyInt_As_int32_t(tmp); jpayne@68: Py_DECREF(tmp); jpayne@68: return val; jpayne@68: } jpayne@68: if (is_unsigned) { jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (unlikely(__Pyx_PyLong_IsNeg(x))) { jpayne@68: goto raise_neg_overflow; jpayne@68: } else if (__Pyx_PyLong_IsCompact(x)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int32_t, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@68: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@68: switch (__Pyx_PyLong_DigitCount(x)) { jpayne@68: case 2: jpayne@68: if ((8 * sizeof(int32_t) > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int32_t) >= 2 * PyLong_SHIFT)) { jpayne@68: return (int32_t) (((((int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 3: jpayne@68: if ((8 * sizeof(int32_t) > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int32_t) >= 3 * PyLong_SHIFT)) { jpayne@68: return (int32_t) (((((((int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 4: jpayne@68: if ((8 * sizeof(int32_t) > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int32_t) >= 4 * PyLong_SHIFT)) { jpayne@68: return (int32_t) (((((((((int32_t)digits[3]) << PyLong_SHIFT) | (int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 jpayne@68: if (unlikely(Py_SIZE(x) < 0)) { jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: #else jpayne@68: { jpayne@68: int result = PyObject_RichCompareBool(x, Py_False, Py_LT); jpayne@68: if (unlikely(result < 0)) jpayne@68: return (int32_t) -1; jpayne@68: if (unlikely(result == 1)) jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: #endif jpayne@68: if ((sizeof(int32_t) <= sizeof(unsigned long))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(int32_t, unsigned long, PyLong_AsUnsignedLong(x)) jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if ((sizeof(int32_t) <= sizeof(unsigned PY_LONG_LONG))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(int32_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (__Pyx_PyLong_IsCompact(x)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int32_t, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@68: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@68: switch (__Pyx_PyLong_SignedDigitCount(x)) { jpayne@68: case -2: jpayne@68: if ((8 * sizeof(int32_t) - 1 > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int32_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int32_t) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: return (int32_t) (((int32_t)-1)*(((((int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 2: jpayne@68: if ((8 * sizeof(int32_t) > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int32_t) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: return (int32_t) ((((((int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case -3: jpayne@68: if ((8 * sizeof(int32_t) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int32_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int32_t) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: return (int32_t) (((int32_t)-1)*(((((((int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 3: jpayne@68: if ((8 * sizeof(int32_t) > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int32_t) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: return (int32_t) ((((((((int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case -4: jpayne@68: if ((8 * sizeof(int32_t) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int32_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int32_t) - 1 > 4 * PyLong_SHIFT)) { jpayne@68: return (int32_t) (((int32_t)-1)*(((((((((int32_t)digits[3]) << PyLong_SHIFT) | (int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 4: jpayne@68: if ((8 * sizeof(int32_t) > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(int32_t) - 1 > 4 * PyLong_SHIFT)) { jpayne@68: return (int32_t) ((((((((((int32_t)digits[3]) << PyLong_SHIFT) | (int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: if ((sizeof(int32_t) <= sizeof(long))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(int32_t, long, PyLong_AsLong(x)) jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if ((sizeof(int32_t) <= sizeof(PY_LONG_LONG))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(int32_t, PY_LONG_LONG, PyLong_AsLongLong(x)) jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: int32_t val; jpayne@68: int ret = -1; jpayne@68: #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: Py_ssize_t bytes_copied = PyLong_AsNativeBytes( jpayne@68: x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); jpayne@68: if (unlikely(bytes_copied == -1)) { jpayne@68: } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { jpayne@68: goto raise_overflow; jpayne@68: } else { jpayne@68: ret = 0; jpayne@68: } jpayne@68: #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) jpayne@68: int one = 1; int is_little = (int)*(unsigned char *)&one; jpayne@68: unsigned char *bytes = (unsigned char *)&val; jpayne@68: ret = _PyLong_AsByteArray((PyLongObject *)x, jpayne@68: bytes, sizeof(val), jpayne@68: is_little, !is_unsigned); jpayne@68: #else jpayne@68: PyObject *v; jpayne@68: PyObject *stepval = NULL, *mask = NULL, *shift = NULL; jpayne@68: int bits, remaining_bits, is_negative = 0; jpayne@68: int chunk_size = (sizeof(long) < 8) ? 30 : 62; jpayne@68: if (likely(PyLong_CheckExact(x))) { jpayne@68: v = __Pyx_NewRef(x); jpayne@68: } else { jpayne@68: v = PyNumber_Long(x); jpayne@68: if (unlikely(!v)) return (int32_t) -1; jpayne@68: assert(PyLong_CheckExact(v)); jpayne@68: } jpayne@68: { jpayne@68: int result = PyObject_RichCompareBool(v, Py_False, Py_LT); jpayne@68: if (unlikely(result < 0)) { jpayne@68: Py_DECREF(v); jpayne@68: return (int32_t) -1; jpayne@68: } jpayne@68: is_negative = result == 1; jpayne@68: } jpayne@68: if (is_unsigned && unlikely(is_negative)) { jpayne@68: Py_DECREF(v); jpayne@68: goto raise_neg_overflow; jpayne@68: } else if (is_negative) { jpayne@68: stepval = PyNumber_Invert(v); jpayne@68: Py_DECREF(v); jpayne@68: if (unlikely(!stepval)) jpayne@68: return (int32_t) -1; jpayne@68: } else { jpayne@68: stepval = v; jpayne@68: } jpayne@68: v = NULL; jpayne@68: val = (int32_t) 0; jpayne@68: mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; jpayne@68: shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; jpayne@68: for (bits = 0; bits < (int) sizeof(int32_t) * 8 - chunk_size; bits += chunk_size) { jpayne@68: PyObject *tmp, *digit; jpayne@68: long idigit; jpayne@68: digit = PyNumber_And(stepval, mask); jpayne@68: if (unlikely(!digit)) goto done; jpayne@68: idigit = PyLong_AsLong(digit); jpayne@68: Py_DECREF(digit); jpayne@68: if (unlikely(idigit < 0)) goto done; jpayne@68: val |= ((int32_t) idigit) << bits; jpayne@68: tmp = PyNumber_Rshift(stepval, shift); jpayne@68: if (unlikely(!tmp)) goto done; jpayne@68: Py_DECREF(stepval); stepval = tmp; jpayne@68: } jpayne@68: Py_DECREF(shift); shift = NULL; jpayne@68: Py_DECREF(mask); mask = NULL; jpayne@68: { jpayne@68: long idigit = PyLong_AsLong(stepval); jpayne@68: if (unlikely(idigit < 0)) goto done; jpayne@68: remaining_bits = ((int) sizeof(int32_t) * 8) - bits - (is_unsigned ? 0 : 1); jpayne@68: if (unlikely(idigit >= (1L << remaining_bits))) jpayne@68: goto raise_overflow; jpayne@68: val |= ((int32_t) idigit) << bits; jpayne@68: } jpayne@68: if (!is_unsigned) { jpayne@68: if (unlikely(val & (((int32_t) 1) << (sizeof(int32_t) * 8 - 1)))) jpayne@68: goto raise_overflow; jpayne@68: if (is_negative) jpayne@68: val = ~val; jpayne@68: } jpayne@68: ret = 0; jpayne@68: done: jpayne@68: Py_XDECREF(shift); jpayne@68: Py_XDECREF(mask); jpayne@68: Py_XDECREF(stepval); jpayne@68: #endif jpayne@68: if (unlikely(ret)) jpayne@68: return (int32_t) -1; jpayne@68: return val; jpayne@68: } jpayne@68: raise_overflow: jpayne@68: PyErr_SetString(PyExc_OverflowError, jpayne@68: "value too large to convert to int32_t"); jpayne@68: return (int32_t) -1; jpayne@68: raise_neg_overflow: jpayne@68: PyErr_SetString(PyExc_OverflowError, jpayne@68: "can't convert negative value to int32_t"); jpayne@68: return (int32_t) -1; jpayne@68: } jpayne@68: jpayne@68: /* CIntToPy */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const long neg_one = (long) -1, const_zero = (long) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: if (is_unsigned) { jpayne@68: if (sizeof(long) < sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: } else if (sizeof(long) <= sizeof(unsigned long)) { jpayne@68: return PyLong_FromUnsignedLong((unsigned long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { jpayne@68: return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: if (sizeof(long) <= sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { jpayne@68: return PyLong_FromLongLong((PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: unsigned char *bytes = (unsigned char *)&value; jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 jpayne@68: if (is_unsigned) { jpayne@68: return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); jpayne@68: } else { jpayne@68: return PyLong_FromNativeBytes(bytes, sizeof(value), -1); jpayne@68: } jpayne@68: #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: return _PyLong_FromByteArray(bytes, sizeof(long), jpayne@68: little, !is_unsigned); jpayne@68: #else jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: PyObject *from_bytes, *result = NULL; jpayne@68: PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; jpayne@68: from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); jpayne@68: if (!from_bytes) return NULL; jpayne@68: py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(long)); jpayne@68: if (!py_bytes) goto limited_bad; jpayne@68: order_str = PyUnicode_FromString(little ? "little" : "big"); jpayne@68: if (!order_str) goto limited_bad; jpayne@68: arg_tuple = PyTuple_Pack(2, py_bytes, order_str); jpayne@68: if (!arg_tuple) goto limited_bad; jpayne@68: if (!is_unsigned) { jpayne@68: kwds = PyDict_New(); jpayne@68: if (!kwds) goto limited_bad; jpayne@68: if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; jpayne@68: } jpayne@68: result = PyObject_Call(from_bytes, arg_tuple, kwds); jpayne@68: limited_bad: jpayne@68: Py_XDECREF(kwds); jpayne@68: Py_XDECREF(arg_tuple); jpayne@68: Py_XDECREF(order_str); jpayne@68: Py_XDECREF(py_bytes); jpayne@68: Py_XDECREF(from_bytes); jpayne@68: return result; jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* CIntToPy */ jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int32_t(int32_t value) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const int32_t neg_one = (int32_t) -1, const_zero = (int32_t) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: if (is_unsigned) { jpayne@68: if (sizeof(int32_t) < sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: } else if (sizeof(int32_t) <= sizeof(unsigned long)) { jpayne@68: return PyLong_FromUnsignedLong((unsigned long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(int32_t) <= sizeof(unsigned PY_LONG_LONG)) { jpayne@68: return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: if (sizeof(int32_t) <= sizeof(long)) { jpayne@68: return PyInt_FromLong((long) value); jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if (sizeof(int32_t) <= sizeof(PY_LONG_LONG)) { jpayne@68: return PyLong_FromLongLong((PY_LONG_LONG) value); jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: unsigned char *bytes = (unsigned char *)&value; jpayne@68: #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 jpayne@68: if (is_unsigned) { jpayne@68: return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); jpayne@68: } else { jpayne@68: return PyLong_FromNativeBytes(bytes, sizeof(value), -1); jpayne@68: } jpayne@68: #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: return _PyLong_FromByteArray(bytes, sizeof(int32_t), jpayne@68: little, !is_unsigned); jpayne@68: #else jpayne@68: int one = 1; int little = (int)*(unsigned char *)&one; jpayne@68: PyObject *from_bytes, *result = NULL; jpayne@68: PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; jpayne@68: from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); jpayne@68: if (!from_bytes) return NULL; jpayne@68: py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(int32_t)); jpayne@68: if (!py_bytes) goto limited_bad; jpayne@68: order_str = PyUnicode_FromString(little ? "little" : "big"); jpayne@68: if (!order_str) goto limited_bad; jpayne@68: arg_tuple = PyTuple_Pack(2, py_bytes, order_str); jpayne@68: if (!arg_tuple) goto limited_bad; jpayne@68: if (!is_unsigned) { jpayne@68: kwds = PyDict_New(); jpayne@68: if (!kwds) goto limited_bad; jpayne@68: if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; jpayne@68: } jpayne@68: result = PyObject_Call(from_bytes, arg_tuple, kwds); jpayne@68: limited_bad: jpayne@68: Py_XDECREF(kwds); jpayne@68: Py_XDECREF(arg_tuple); jpayne@68: Py_XDECREF(order_str); jpayne@68: Py_XDECREF(py_bytes); jpayne@68: Py_XDECREF(from_bytes); jpayne@68: return result; jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* FormatTypeName */ jpayne@68: #if CYTHON_COMPILING_IN_LIMITED_API jpayne@68: static __Pyx_TypeName jpayne@68: __Pyx_PyType_GetName(PyTypeObject* tp) jpayne@68: { jpayne@68: PyObject *name = __Pyx_PyObject_GetAttrStr((PyObject *)tp, jpayne@68: __pyx_n_s_name_2); jpayne@68: if (unlikely(name == NULL) || unlikely(!PyUnicode_Check(name))) { jpayne@68: PyErr_Clear(); jpayne@68: Py_XDECREF(name); jpayne@68: name = __Pyx_NewRef(__pyx_n_s__97); jpayne@68: } jpayne@68: return name; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* CIntFromPy */ jpayne@68: static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic push jpayne@68: #pragma GCC diagnostic ignored "-Wconversion" jpayne@68: #endif jpayne@68: const long neg_one = (long) -1, const_zero = (long) 0; jpayne@68: #ifdef __Pyx_HAS_GCC_DIAGNOSTIC jpayne@68: #pragma GCC diagnostic pop jpayne@68: #endif jpayne@68: const int is_unsigned = neg_one > const_zero; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(PyInt_Check(x))) { jpayne@68: if ((sizeof(long) < sizeof(long))) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x)) jpayne@68: } else { jpayne@68: long val = PyInt_AS_LONG(x); jpayne@68: if (is_unsigned && unlikely(val < 0)) { jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: return (long) val; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: if (unlikely(!PyLong_Check(x))) { jpayne@68: long val; jpayne@68: PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); jpayne@68: if (!tmp) return (long) -1; jpayne@68: val = __Pyx_PyInt_As_long(tmp); jpayne@68: Py_DECREF(tmp); jpayne@68: return val; jpayne@68: } jpayne@68: if (is_unsigned) { jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (unlikely(__Pyx_PyLong_IsNeg(x))) { jpayne@68: goto raise_neg_overflow; jpayne@68: } else if (__Pyx_PyLong_IsCompact(x)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@68: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@68: switch (__Pyx_PyLong_DigitCount(x)) { jpayne@68: case 2: jpayne@68: if ((8 * sizeof(long) > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(long) >= 2 * PyLong_SHIFT)) { jpayne@68: return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 3: jpayne@68: if ((8 * sizeof(long) > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(long) >= 3 * PyLong_SHIFT)) { jpayne@68: return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 4: jpayne@68: if ((8 * sizeof(long) > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(long) >= 4 * PyLong_SHIFT)) { jpayne@68: return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 jpayne@68: if (unlikely(Py_SIZE(x) < 0)) { jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: #else jpayne@68: { jpayne@68: int result = PyObject_RichCompareBool(x, Py_False, Py_LT); jpayne@68: if (unlikely(result < 0)) jpayne@68: return (long) -1; jpayne@68: if (unlikely(result == 1)) jpayne@68: goto raise_neg_overflow; jpayne@68: } jpayne@68: #endif jpayne@68: if ((sizeof(long) <= sizeof(unsigned long))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x)) jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if ((sizeof(long) <= sizeof(unsigned PY_LONG_LONG))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) jpayne@68: #endif jpayne@68: } jpayne@68: } else { jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (__Pyx_PyLong_IsCompact(x)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(x); jpayne@68: assert(__Pyx_PyLong_DigitCount(x) > 1); jpayne@68: switch (__Pyx_PyLong_SignedDigitCount(x)) { jpayne@68: case -2: jpayne@68: if ((8 * sizeof(long) - 1 > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 2: jpayne@68: if ((8 * sizeof(long) > 1 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case -3: jpayne@68: if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 3: jpayne@68: if ((8 * sizeof(long) > 2 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case -4: jpayne@68: if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(long) - 1 > 4 * PyLong_SHIFT)) { jpayne@68: return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: case 4: jpayne@68: if ((8 * sizeof(long) > 3 * PyLong_SHIFT)) { jpayne@68: if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { jpayne@68: __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) jpayne@68: } else if ((8 * sizeof(long) - 1 > 4 * PyLong_SHIFT)) { jpayne@68: return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); jpayne@68: } jpayne@68: } jpayne@68: break; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: if ((sizeof(long) <= sizeof(long))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x)) jpayne@68: #ifdef HAVE_LONG_LONG jpayne@68: } else if ((sizeof(long) <= sizeof(PY_LONG_LONG))) { jpayne@68: __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x)) jpayne@68: #endif jpayne@68: } jpayne@68: } jpayne@68: { jpayne@68: long val; jpayne@68: int ret = -1; jpayne@68: #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API jpayne@68: Py_ssize_t bytes_copied = PyLong_AsNativeBytes( jpayne@68: x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); jpayne@68: if (unlikely(bytes_copied == -1)) { jpayne@68: } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { jpayne@68: goto raise_overflow; jpayne@68: } else { jpayne@68: ret = 0; jpayne@68: } jpayne@68: #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) jpayne@68: int one = 1; int is_little = (int)*(unsigned char *)&one; jpayne@68: unsigned char *bytes = (unsigned char *)&val; jpayne@68: ret = _PyLong_AsByteArray((PyLongObject *)x, jpayne@68: bytes, sizeof(val), jpayne@68: is_little, !is_unsigned); jpayne@68: #else jpayne@68: PyObject *v; jpayne@68: PyObject *stepval = NULL, *mask = NULL, *shift = NULL; jpayne@68: int bits, remaining_bits, is_negative = 0; jpayne@68: int chunk_size = (sizeof(long) < 8) ? 30 : 62; jpayne@68: if (likely(PyLong_CheckExact(x))) { jpayne@68: v = __Pyx_NewRef(x); jpayne@68: } else { jpayne@68: v = PyNumber_Long(x); jpayne@68: if (unlikely(!v)) return (long) -1; jpayne@68: assert(PyLong_CheckExact(v)); jpayne@68: } jpayne@68: { jpayne@68: int result = PyObject_RichCompareBool(v, Py_False, Py_LT); jpayne@68: if (unlikely(result < 0)) { jpayne@68: Py_DECREF(v); jpayne@68: return (long) -1; jpayne@68: } jpayne@68: is_negative = result == 1; jpayne@68: } jpayne@68: if (is_unsigned && unlikely(is_negative)) { jpayne@68: Py_DECREF(v); jpayne@68: goto raise_neg_overflow; jpayne@68: } else if (is_negative) { jpayne@68: stepval = PyNumber_Invert(v); jpayne@68: Py_DECREF(v); jpayne@68: if (unlikely(!stepval)) jpayne@68: return (long) -1; jpayne@68: } else { jpayne@68: stepval = v; jpayne@68: } jpayne@68: v = NULL; jpayne@68: val = (long) 0; jpayne@68: mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; jpayne@68: shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; jpayne@68: for (bits = 0; bits < (int) sizeof(long) * 8 - chunk_size; bits += chunk_size) { jpayne@68: PyObject *tmp, *digit; jpayne@68: long idigit; jpayne@68: digit = PyNumber_And(stepval, mask); jpayne@68: if (unlikely(!digit)) goto done; jpayne@68: idigit = PyLong_AsLong(digit); jpayne@68: Py_DECREF(digit); jpayne@68: if (unlikely(idigit < 0)) goto done; jpayne@68: val |= ((long) idigit) << bits; jpayne@68: tmp = PyNumber_Rshift(stepval, shift); jpayne@68: if (unlikely(!tmp)) goto done; jpayne@68: Py_DECREF(stepval); stepval = tmp; jpayne@68: } jpayne@68: Py_DECREF(shift); shift = NULL; jpayne@68: Py_DECREF(mask); mask = NULL; jpayne@68: { jpayne@68: long idigit = PyLong_AsLong(stepval); jpayne@68: if (unlikely(idigit < 0)) goto done; jpayne@68: remaining_bits = ((int) sizeof(long) * 8) - bits - (is_unsigned ? 0 : 1); jpayne@68: if (unlikely(idigit >= (1L << remaining_bits))) jpayne@68: goto raise_overflow; jpayne@68: val |= ((long) idigit) << bits; jpayne@68: } jpayne@68: if (!is_unsigned) { jpayne@68: if (unlikely(val & (((long) 1) << (sizeof(long) * 8 - 1)))) jpayne@68: goto raise_overflow; jpayne@68: if (is_negative) jpayne@68: val = ~val; jpayne@68: } jpayne@68: ret = 0; jpayne@68: done: jpayne@68: Py_XDECREF(shift); jpayne@68: Py_XDECREF(mask); jpayne@68: Py_XDECREF(stepval); jpayne@68: #endif jpayne@68: if (unlikely(ret)) jpayne@68: return (long) -1; jpayne@68: return val; jpayne@68: } jpayne@68: raise_overflow: jpayne@68: PyErr_SetString(PyExc_OverflowError, jpayne@68: "value too large to convert to long"); jpayne@68: return (long) -1; jpayne@68: raise_neg_overflow: jpayne@68: PyErr_SetString(PyExc_OverflowError, jpayne@68: "can't convert negative value to long"); jpayne@68: return (long) -1; jpayne@68: } jpayne@68: jpayne@68: /* FastTypeChecks */ jpayne@68: #if CYTHON_COMPILING_IN_CPYTHON jpayne@68: static int __Pyx_InBases(PyTypeObject *a, PyTypeObject *b) { jpayne@68: while (a) { jpayne@68: a = __Pyx_PyType_GetSlot(a, tp_base, PyTypeObject*); jpayne@68: if (a == b) jpayne@68: return 1; jpayne@68: } jpayne@68: return b == &PyBaseObject_Type; jpayne@68: } jpayne@68: static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b) { jpayne@68: PyObject *mro; jpayne@68: if (a == b) return 1; jpayne@68: mro = a->tp_mro; jpayne@68: if (likely(mro)) { jpayne@68: Py_ssize_t i, n; jpayne@68: n = PyTuple_GET_SIZE(mro); jpayne@68: for (i = 0; i < n; i++) { jpayne@68: if (PyTuple_GET_ITEM(mro, i) == (PyObject *)b) jpayne@68: return 1; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: return __Pyx_InBases(a, b); jpayne@68: } jpayne@68: static CYTHON_INLINE int __Pyx_IsAnySubtype2(PyTypeObject *cls, PyTypeObject *a, PyTypeObject *b) { jpayne@68: PyObject *mro; jpayne@68: if (cls == a || cls == b) return 1; jpayne@68: mro = cls->tp_mro; jpayne@68: if (likely(mro)) { jpayne@68: Py_ssize_t i, n; jpayne@68: n = PyTuple_GET_SIZE(mro); jpayne@68: for (i = 0; i < n; i++) { jpayne@68: PyObject *base = PyTuple_GET_ITEM(mro, i); jpayne@68: if (base == (PyObject *)a || base == (PyObject *)b) jpayne@68: return 1; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: return __Pyx_InBases(cls, a) || __Pyx_InBases(cls, b); jpayne@68: } jpayne@68: #if PY_MAJOR_VERSION == 2 jpayne@68: static int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject* exc_type2) { jpayne@68: PyObject *exception, *value, *tb; jpayne@68: int res; jpayne@68: __Pyx_PyThreadState_declare jpayne@68: __Pyx_PyThreadState_assign jpayne@68: __Pyx_ErrFetch(&exception, &value, &tb); jpayne@68: res = exc_type1 ? PyObject_IsSubclass(err, exc_type1) : 0; jpayne@68: if (unlikely(res == -1)) { jpayne@68: PyErr_WriteUnraisable(err); jpayne@68: res = 0; jpayne@68: } jpayne@68: if (!res) { jpayne@68: res = PyObject_IsSubclass(err, exc_type2); jpayne@68: if (unlikely(res == -1)) { jpayne@68: PyErr_WriteUnraisable(err); jpayne@68: res = 0; jpayne@68: } jpayne@68: } jpayne@68: __Pyx_ErrRestore(exception, value, tb); jpayne@68: return res; jpayne@68: } jpayne@68: #else jpayne@68: static CYTHON_INLINE int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject *exc_type2) { jpayne@68: if (exc_type1) { jpayne@68: return __Pyx_IsAnySubtype2((PyTypeObject*)err, (PyTypeObject*)exc_type1, (PyTypeObject*)exc_type2); jpayne@68: } else { jpayne@68: return __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type2); jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: static int __Pyx_PyErr_GivenExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) { jpayne@68: Py_ssize_t i, n; jpayne@68: assert(PyExceptionClass_Check(exc_type)); jpayne@68: n = PyTuple_GET_SIZE(tuple); jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: for (i=0; i= 0x030B00A4 jpayne@68: return Py_Version & ~0xFFUL; jpayne@68: #else jpayne@68: const char* rt_version = Py_GetVersion(); jpayne@68: unsigned long version = 0; jpayne@68: unsigned long factor = 0x01000000UL; jpayne@68: unsigned int digit = 0; jpayne@68: int i = 0; jpayne@68: while (factor) { jpayne@68: while ('0' <= rt_version[i] && rt_version[i] <= '9') { jpayne@68: digit = digit * 10 + (unsigned int) (rt_version[i] - '0'); jpayne@68: ++i; jpayne@68: } jpayne@68: version += factor * digit; jpayne@68: if (rt_version[i] != '.') jpayne@68: break; jpayne@68: digit = 0; jpayne@68: factor >>= 8; jpayne@68: ++i; jpayne@68: } jpayne@68: return version; jpayne@68: #endif jpayne@68: } jpayne@68: static int __Pyx_check_binary_version(unsigned long ct_version, unsigned long rt_version, int allow_newer) { jpayne@68: const unsigned long MAJOR_MINOR = 0xFFFF0000UL; jpayne@68: if ((rt_version & MAJOR_MINOR) == (ct_version & MAJOR_MINOR)) jpayne@68: return 0; jpayne@68: if (likely(allow_newer && (rt_version & MAJOR_MINOR) > (ct_version & MAJOR_MINOR))) jpayne@68: return 1; jpayne@68: { jpayne@68: char message[200]; jpayne@68: PyOS_snprintf(message, sizeof(message), jpayne@68: "compile time Python version %d.%d " jpayne@68: "of module '%.100s' " jpayne@68: "%s " jpayne@68: "runtime version %d.%d", jpayne@68: (int) (ct_version >> 24), (int) ((ct_version >> 16) & 0xFF), jpayne@68: __Pyx_MODULE_NAME, jpayne@68: (allow_newer) ? "was newer than" : "does not match", jpayne@68: (int) (rt_version >> 24), (int) ((rt_version >> 16) & 0xFF) jpayne@68: ); jpayne@68: return PyErr_WarnEx(NULL, message, 1); jpayne@68: } jpayne@68: } jpayne@68: jpayne@68: /* FunctionImport */ jpayne@68: #ifndef __PYX_HAVE_RT_ImportFunction_3_0_11 jpayne@68: #define __PYX_HAVE_RT_ImportFunction_3_0_11 jpayne@68: static int __Pyx_ImportFunction_3_0_11(PyObject *module, const char *funcname, void (**f)(void), const char *sig) { jpayne@68: PyObject *d = 0; jpayne@68: PyObject *cobj = 0; jpayne@68: union { jpayne@68: void (*fp)(void); jpayne@68: void *p; jpayne@68: } tmp; jpayne@68: d = PyObject_GetAttrString(module, (char *)"__pyx_capi__"); jpayne@68: if (!d) jpayne@68: goto bad; jpayne@68: cobj = PyDict_GetItemString(d, funcname); jpayne@68: if (!cobj) { jpayne@68: PyErr_Format(PyExc_ImportError, jpayne@68: "%.200s does not export expected C function %.200s", jpayne@68: PyModule_GetName(module), funcname); jpayne@68: goto bad; jpayne@68: } jpayne@68: if (!PyCapsule_IsValid(cobj, sig)) { jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "C function %.200s.%.200s has wrong signature (expected %.500s, got %.500s)", jpayne@68: PyModule_GetName(module), funcname, sig, PyCapsule_GetName(cobj)); jpayne@68: goto bad; jpayne@68: } jpayne@68: tmp.p = PyCapsule_GetPointer(cobj, sig); jpayne@68: *f = tmp.fp; jpayne@68: if (!(*f)) jpayne@68: goto bad; jpayne@68: Py_DECREF(d); jpayne@68: return 0; jpayne@68: bad: jpayne@68: Py_XDECREF(d); jpayne@68: return -1; jpayne@68: } jpayne@68: #endif jpayne@68: jpayne@68: /* InitStrings */ jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: static int __Pyx_InitString(__Pyx_StringTabEntry t, PyObject **str) { jpayne@68: if (t.is_unicode | t.is_str) { jpayne@68: if (t.intern) { jpayne@68: *str = PyUnicode_InternFromString(t.s); jpayne@68: } else if (t.encoding) { jpayne@68: *str = PyUnicode_Decode(t.s, t.n - 1, t.encoding, NULL); jpayne@68: } else { jpayne@68: *str = PyUnicode_FromStringAndSize(t.s, t.n - 1); jpayne@68: } jpayne@68: } else { jpayne@68: *str = PyBytes_FromStringAndSize(t.s, t.n - 1); jpayne@68: } jpayne@68: if (!*str) jpayne@68: return -1; jpayne@68: if (PyObject_Hash(*str) == -1) jpayne@68: return -1; jpayne@68: return 0; jpayne@68: } jpayne@68: #endif jpayne@68: static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { jpayne@68: while (t->p) { jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: __Pyx_InitString(*t, t->p); jpayne@68: #else jpayne@68: if (t->is_unicode) { jpayne@68: *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); jpayne@68: } else if (t->intern) { jpayne@68: *t->p = PyString_InternFromString(t->s); jpayne@68: } else { jpayne@68: *t->p = PyString_FromStringAndSize(t->s, t->n - 1); jpayne@68: } jpayne@68: if (!*t->p) jpayne@68: return -1; jpayne@68: if (PyObject_Hash(*t->p) == -1) jpayne@68: return -1; jpayne@68: #endif jpayne@68: ++t; jpayne@68: } jpayne@68: return 0; jpayne@68: } jpayne@68: jpayne@68: #include jpayne@68: static CYTHON_INLINE Py_ssize_t __Pyx_ssize_strlen(const char *s) { jpayne@68: size_t len = strlen(s); jpayne@68: if (unlikely(len > (size_t) PY_SSIZE_T_MAX)) { jpayne@68: PyErr_SetString(PyExc_OverflowError, "byte string is too long"); jpayne@68: return -1; jpayne@68: } jpayne@68: return (Py_ssize_t) len; jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { jpayne@68: Py_ssize_t len = __Pyx_ssize_strlen(c_str); jpayne@68: if (unlikely(len < 0)) return NULL; jpayne@68: return __Pyx_PyUnicode_FromStringAndSize(c_str, len); jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyByteArray_FromString(const char* c_str) { jpayne@68: Py_ssize_t len = __Pyx_ssize_strlen(c_str); jpayne@68: if (unlikely(len < 0)) return NULL; jpayne@68: return PyByteArray_FromStringAndSize(c_str, len); jpayne@68: } jpayne@68: static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) { jpayne@68: Py_ssize_t ignore; jpayne@68: return __Pyx_PyObject_AsStringAndSize(o, &ignore); jpayne@68: } jpayne@68: #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT jpayne@68: #if !CYTHON_PEP393_ENABLED jpayne@68: static const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) { jpayne@68: char* defenc_c; jpayne@68: PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); jpayne@68: if (!defenc) return NULL; jpayne@68: defenc_c = PyBytes_AS_STRING(defenc); jpayne@68: #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII jpayne@68: { jpayne@68: char* end = defenc_c + PyBytes_GET_SIZE(defenc); jpayne@68: char* c; jpayne@68: for (c = defenc_c; c < end; c++) { jpayne@68: if ((unsigned char) (*c) >= 128) { jpayne@68: PyUnicode_AsASCIIString(o); jpayne@68: return NULL; jpayne@68: } jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: *length = PyBytes_GET_SIZE(defenc); jpayne@68: return defenc_c; jpayne@68: } jpayne@68: #else jpayne@68: static CYTHON_INLINE const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) { jpayne@68: if (unlikely(__Pyx_PyUnicode_READY(o) == -1)) return NULL; jpayne@68: #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII jpayne@68: if (likely(PyUnicode_IS_ASCII(o))) { jpayne@68: *length = PyUnicode_GET_LENGTH(o); jpayne@68: return PyUnicode_AsUTF8(o); jpayne@68: } else { jpayne@68: PyUnicode_AsASCIIString(o); jpayne@68: return NULL; jpayne@68: } jpayne@68: #else jpayne@68: return PyUnicode_AsUTF8AndSize(o, length); jpayne@68: #endif jpayne@68: } jpayne@68: #endif jpayne@68: #endif jpayne@68: static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { jpayne@68: #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT jpayne@68: if ( jpayne@68: #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII jpayne@68: __Pyx_sys_getdefaultencoding_not_ascii && jpayne@68: #endif jpayne@68: PyUnicode_Check(o)) { jpayne@68: return __Pyx_PyUnicode_AsStringAndSize(o, length); jpayne@68: } else jpayne@68: #endif jpayne@68: #if (!CYTHON_COMPILING_IN_PYPY && !CYTHON_COMPILING_IN_LIMITED_API) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE)) jpayne@68: if (PyByteArray_Check(o)) { jpayne@68: *length = PyByteArray_GET_SIZE(o); jpayne@68: return PyByteArray_AS_STRING(o); jpayne@68: } else jpayne@68: #endif jpayne@68: { jpayne@68: char* result; jpayne@68: int r = PyBytes_AsStringAndSize(o, &result, length); jpayne@68: if (unlikely(r < 0)) { jpayne@68: return NULL; jpayne@68: } else { jpayne@68: return result; jpayne@68: } jpayne@68: } jpayne@68: } jpayne@68: static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { jpayne@68: int is_true = x == Py_True; jpayne@68: if (is_true | (x == Py_False) | (x == Py_None)) return is_true; jpayne@68: else return PyObject_IsTrue(x); jpayne@68: } jpayne@68: static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject* x) { jpayne@68: int retval; jpayne@68: if (unlikely(!x)) return -1; jpayne@68: retval = __Pyx_PyObject_IsTrue(x); jpayne@68: Py_DECREF(x); jpayne@68: return retval; jpayne@68: } jpayne@68: static PyObject* __Pyx_PyNumber_IntOrLongWrongResultType(PyObject* result, const char* type_name) { jpayne@68: __Pyx_TypeName result_type_name = __Pyx_PyType_GetName(Py_TYPE(result)); jpayne@68: #if PY_MAJOR_VERSION >= 3 jpayne@68: if (PyLong_Check(result)) { jpayne@68: if (PyErr_WarnFormat(PyExc_DeprecationWarning, 1, jpayne@68: "__int__ returned non-int (type " __Pyx_FMT_TYPENAME "). " jpayne@68: "The ability to return an instance of a strict subclass of int is deprecated, " jpayne@68: "and may be removed in a future version of Python.", jpayne@68: result_type_name)) { jpayne@68: __Pyx_DECREF_TypeName(result_type_name); jpayne@68: Py_DECREF(result); jpayne@68: return NULL; jpayne@68: } jpayne@68: __Pyx_DECREF_TypeName(result_type_name); jpayne@68: return result; jpayne@68: } jpayne@68: #endif jpayne@68: PyErr_Format(PyExc_TypeError, jpayne@68: "__%.4s__ returned non-%.4s (type " __Pyx_FMT_TYPENAME ")", jpayne@68: type_name, type_name, result_type_name); jpayne@68: __Pyx_DECREF_TypeName(result_type_name); jpayne@68: Py_DECREF(result); jpayne@68: return NULL; jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) { jpayne@68: #if CYTHON_USE_TYPE_SLOTS jpayne@68: PyNumberMethods *m; jpayne@68: #endif jpayne@68: const char *name = NULL; jpayne@68: PyObject *res = NULL; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(PyInt_Check(x) || PyLong_Check(x))) jpayne@68: #else jpayne@68: if (likely(PyLong_Check(x))) jpayne@68: #endif jpayne@68: return __Pyx_NewRef(x); jpayne@68: #if CYTHON_USE_TYPE_SLOTS jpayne@68: m = Py_TYPE(x)->tp_as_number; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (m && m->nb_int) { jpayne@68: name = "int"; jpayne@68: res = m->nb_int(x); jpayne@68: } jpayne@68: else if (m && m->nb_long) { jpayne@68: name = "long"; jpayne@68: res = m->nb_long(x); jpayne@68: } jpayne@68: #else jpayne@68: if (likely(m && m->nb_int)) { jpayne@68: name = "int"; jpayne@68: res = m->nb_int(x); jpayne@68: } jpayne@68: #endif jpayne@68: #else jpayne@68: if (!PyBytes_CheckExact(x) && !PyUnicode_CheckExact(x)) { jpayne@68: res = PyNumber_Int(x); jpayne@68: } jpayne@68: #endif jpayne@68: if (likely(res)) { jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (unlikely(!PyInt_Check(res) && !PyLong_Check(res))) { jpayne@68: #else jpayne@68: if (unlikely(!PyLong_CheckExact(res))) { jpayne@68: #endif jpayne@68: return __Pyx_PyNumber_IntOrLongWrongResultType(res, name); jpayne@68: } jpayne@68: } jpayne@68: else if (!PyErr_Occurred()) { jpayne@68: PyErr_SetString(PyExc_TypeError, jpayne@68: "an integer is required"); jpayne@68: } jpayne@68: return res; jpayne@68: } jpayne@68: static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { jpayne@68: Py_ssize_t ival; jpayne@68: PyObject *x; jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: if (likely(PyInt_CheckExact(b))) { jpayne@68: if (sizeof(Py_ssize_t) >= sizeof(long)) jpayne@68: return PyInt_AS_LONG(b); jpayne@68: else jpayne@68: return PyInt_AsSsize_t(b); jpayne@68: } jpayne@68: #endif jpayne@68: if (likely(PyLong_CheckExact(b))) { jpayne@68: #if CYTHON_USE_PYLONG_INTERNALS jpayne@68: if (likely(__Pyx_PyLong_IsCompact(b))) { jpayne@68: return __Pyx_PyLong_CompactValue(b); jpayne@68: } else { jpayne@68: const digit* digits = __Pyx_PyLong_Digits(b); jpayne@68: const Py_ssize_t size = __Pyx_PyLong_SignedDigitCount(b); jpayne@68: switch (size) { jpayne@68: case 2: jpayne@68: if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { jpayne@68: return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@68: } jpayne@68: break; jpayne@68: case -2: jpayne@68: if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { jpayne@68: return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@68: } jpayne@68: break; jpayne@68: case 3: jpayne@68: if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { jpayne@68: return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@68: } jpayne@68: break; jpayne@68: case -3: jpayne@68: if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { jpayne@68: return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@68: } jpayne@68: break; jpayne@68: case 4: jpayne@68: if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { jpayne@68: return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@68: } jpayne@68: break; jpayne@68: case -4: jpayne@68: if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { jpayne@68: return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); jpayne@68: } jpayne@68: break; jpayne@68: } jpayne@68: } jpayne@68: #endif jpayne@68: return PyLong_AsSsize_t(b); jpayne@68: } jpayne@68: x = PyNumber_Index(b); jpayne@68: if (!x) return -1; jpayne@68: ival = PyInt_AsSsize_t(x); jpayne@68: Py_DECREF(x); jpayne@68: return ival; jpayne@68: } jpayne@68: static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject* o) { jpayne@68: if (sizeof(Py_hash_t) == sizeof(Py_ssize_t)) { jpayne@68: return (Py_hash_t) __Pyx_PyIndex_AsSsize_t(o); jpayne@68: #if PY_MAJOR_VERSION < 3 jpayne@68: } else if (likely(PyInt_CheckExact(o))) { jpayne@68: return PyInt_AS_LONG(o); jpayne@68: #endif jpayne@68: } else { jpayne@68: Py_ssize_t ival; jpayne@68: PyObject *x; jpayne@68: x = PyNumber_Index(o); jpayne@68: if (!x) return -1; jpayne@68: ival = PyInt_AsLong(x); jpayne@68: Py_DECREF(x); jpayne@68: return ival; jpayne@68: } jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b) { jpayne@68: return b ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False); jpayne@68: } jpayne@68: static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { jpayne@68: return PyInt_FromSize_t(ival); jpayne@68: } jpayne@68: jpayne@68: jpayne@68: /* #### Code section: utility_code_pragmas_end ### */ jpayne@68: #ifdef _MSC_VER jpayne@68: #pragma warning( pop ) jpayne@68: #endif jpayne@68: jpayne@68: jpayne@68: jpayne@68: /* #### Code section: end ### */ jpayne@68: #endif /* Py_PYTHON_H */