jpayne@68: from typing import (
jpayne@68:     Optional,
jpayne@68:     overload,
jpayne@68:     List,
jpayne@68:     Dict,
jpayne@68:     OrderedDict,
jpayne@68:     Tuple,
jpayne@68:     Iterable,
jpayne@68:     KeysView,
jpayne@68:     Any,
jpayne@68: )
jpayne@68: 
jpayne@68: class TupleProxyIterator:
jpayne@68:     def __init__(self, proxy: Any): ...
jpayne@68:     def __iter__(self) -> TupleProxyIterator: ...
jpayne@68:     def __next__(self) -> Optional[str]: ...
jpayne@68: 
jpayne@68: class TupleProxy:
jpayne@68:     def __init__(self, encoding: str = ...) -> None: ...
jpayne@68:     def __copy__(self) -> TupleProxy: ...
jpayne@68:     def compare(self, other: TupleProxy) -> int: ...
jpayne@68:     def getMinFields(self) -> int: ...
jpayne@68:     def getMaxFields(self) -> int: ...
jpayne@68:     def _getindex(self, index: int) -> str: ...
jpayne@68:     @overload
jpayne@68:     def __getitem__(self, key: slice) -> List[str]: ...
jpayne@68:     @overload
jpayne@68:     def __getitem__(self, key: int) -> Any: ...
jpayne@68:     def _setindex(self, index: int, value: Optional[str]) -> None: ...
jpayne@68:     def __setitem__(self, index: int, value: Optional[str]) -> None: ...
jpayne@68:     def __len__(self) -> int: ...
jpayne@68:     def __iter__(self) -> TupleProxyIterator: ...
jpayne@68: 
jpayne@68: class NamedTupleProxy(TupleProxy):
jpayne@68:     def __setattr__(self, key: str, value: str) -> None: ...
jpayne@68:     def __getattr__(self, key: str) -> str: ...
jpayne@68: 
jpayne@68: class GTFProxy(NamedTupleProxy):
jpayne@68:     def to_dict(self) -> Dict[str, Any]: ...
jpayne@68:     def from_dict(self, d: Dict[str, Any]) -> None: ...
jpayne@68:     def invert(self, lcontig: int) -> None: ...
jpayne@68:     def keys(self) -> KeysView[str]: ...
jpayne@68:     def setAttribute(self, key: str, value: Any) -> None: ...
jpayne@68:     def attribute_string2dict(self, s: str) -> OrderedDict[str, Any]: ...
jpayne@68:     def dict2attribute_string(self, d: Dict[str, Any]) -> str: ...
jpayne@68:     def attribute_string2iterator(self, s: str) -> Iterable[Tuple[str, Any]]: ...
jpayne@68:     def __getattr__(self, key: str) -> Any: ...
jpayne@68:     def __setattr__(self, key: str, value: Any) -> None: ...
jpayne@68:     # deprecated:
jpayne@68:     # def asDict(self) -> Any: ...
jpayne@68:     # def as_dict(self) -> Any: ...
jpayne@68:     # def fromDict(self, *args, **kwargs) -> Any: ...
jpayne@68: 
jpayne@68: class GFF3Proxy(GTFProxy): ...
jpayne@68: 
jpayne@68: class BedProxy(NamedTupleProxy):
jpayne@68:     def __setattr__(self, key: str, value: Any) -> None: ...
jpayne@68: 
jpayne@68: class VCFProxy(NamedTupleProxy):
jpayne@68:     @property
jpayne@68:     def pos(self) -> int: ...
jpayne@68:     def __setattr__(self, key: str, value: Any) -> None: ...