jpayne@68: from array import array
jpayne@68: from typing import Iterable, Optional, Tuple, Union
jpayne@68: 
jpayne@68: def get_encoding_error_handler() -> str: ...
jpayne@68: def set_encoding_error_handler(name: str) -> str: ...
jpayne@68: def _pysam_dispatch(
jpayne@68:     collection: str,
jpayne@68:     method: str,
jpayne@68:     args: Optional[Iterable[str]],
jpayne@68:     catch_stdout: bool = ...,
jpayne@68:     is_usage: bool = ...,
jpayne@68:     save_stdout: Optional[str] = ...,
jpayne@68: ) -> Tuple[int, Union[bytes, str], Union[bytes, str]]: ...
jpayne@68: def parse_region(
jpayne@68:     contig: Optional[str] = ...,
jpayne@68:     start: Optional[int] = ...,
jpayne@68:     stop: Optional[int] = ...,
jpayne@68:     region: Optional[str] = ...,
jpayne@68:     reference: Optional[str] = ...,
jpayne@68:     end: Optional[int] = ...,
jpayne@68: ) -> Tuple[str, int, int]: ...
jpayne@68: def qualitystring_to_array(
jpayne@68:     input_str: Optional[str], offset: int = ...
jpayne@68: ) -> Optional[array]: ...
jpayne@68: def array_to_qualitystring(qualities: array, offset: int = ...) -> Optional[str]: ...
jpayne@68: def qualities_to_qualitystring(
jpayne@68:     qualities: Union[array, Iterable[str]], offset: int = ...
jpayne@68: ) -> Optional[str]: ...