jpayne@68: import pysam.utils
jpayne@68: 
jpayne@68: addreplacerg = pysam.utils.PysamDispatcher('samtools', 'addreplacerg')
jpayne@68: ampliconclip = pysam.utils.PysamDispatcher('samtools', 'ampliconclip')
jpayne@68: ampliconstats = pysam.utils.PysamDispatcher('samtools', 'ampliconstats')
jpayne@68: bam2fq = pysam.utils.PysamDispatcher('samtools', 'bam2fq')
jpayne@68: bamshuf = pysam.utils.PysamDispatcher('samtools', 'bamshuf')
jpayne@68: bedcov = pysam.utils.PysamDispatcher('samtools', 'bedcov')
jpayne@68: calmd = pysam.utils.PysamDispatcher('samtools', 'calmd')
jpayne@68: cat = pysam.utils.PysamDispatcher('samtools', 'cat')
jpayne@68: collate = pysam.utils.PysamDispatcher('samtools', 'collate')
jpayne@68: consensus = pysam.utils.PysamDispatcher('samtools', 'consensus')
jpayne@68: coverage = pysam.utils.PysamDispatcher('samtools', 'coverage')
jpayne@68: cram_size = pysam.utils.PysamDispatcher('samtools', 'cram-size')
jpayne@68: depad = pysam.utils.PysamDispatcher('samtools', 'depad')
jpayne@68: depth = pysam.utils.PysamDispatcher('samtools', 'depth')
jpayne@68: dict = pysam.utils.PysamDispatcher('samtools', 'dict')
jpayne@68: faidx = pysam.utils.PysamDispatcher('samtools', 'faidx')
jpayne@68: fasta = pysam.utils.PysamDispatcher('samtools', 'fasta')
jpayne@68: fastq = pysam.utils.PysamDispatcher('samtools', 'fastq')
jpayne@68: fixmate = pysam.utils.PysamDispatcher('samtools', 'fixmate')
jpayne@68: flags = pysam.utils.PysamDispatcher('samtools', 'flags')
jpayne@68: flagstat = pysam.utils.PysamDispatcher('samtools', 'flagstat')
jpayne@68: fqidx = pysam.utils.PysamDispatcher('samtools', 'fqidx')
jpayne@68: fqimport = pysam.utils.PysamDispatcher('samtools', 'import')
jpayne@68: head = pysam.utils.PysamDispatcher('samtools', 'head')
jpayne@68: idxstats = pysam.utils.PysamDispatcher('samtools', 'idxstats')
jpayne@68: index = pysam.utils.PysamDispatcher('samtools', 'index')
jpayne@68: markdup = pysam.utils.PysamDispatcher('samtools', 'markdup')
jpayne@68: merge = pysam.utils.PysamDispatcher('samtools', 'merge')
jpayne@68: mpileup = pysam.utils.PysamDispatcher('samtools', 'mpileup')
jpayne@68: pad2unpad = pysam.utils.PysamDispatcher('samtools', 'pad2unpad')
jpayne@68: phase = pysam.utils.PysamDispatcher('samtools', 'phase')
jpayne@68: quickcheck = pysam.utils.PysamDispatcher('samtools', 'quickcheck')
jpayne@68: reference = pysam.utils.PysamDispatcher('samtools', 'reference')
jpayne@68: reheader = pysam.utils.PysamDispatcher('samtools', 'reheader')
jpayne@68: reset = pysam.utils.PysamDispatcher('samtools', 'reset')
jpayne@68: rmdup = pysam.utils.PysamDispatcher('samtools', 'rmdup')
jpayne@68: samples = pysam.utils.PysamDispatcher('samtools', 'samples')
jpayne@68: sort = pysam.utils.PysamDispatcher('samtools', 'sort')
jpayne@68: split = pysam.utils.PysamDispatcher('samtools', 'split')
jpayne@68: stats = pysam.utils.PysamDispatcher('samtools', 'stats')
jpayne@68: targetcut = pysam.utils.PysamDispatcher('samtools', 'targetcut')
jpayne@68: tview = pysam.utils.PysamDispatcher('samtools', 'tview')
jpayne@68: version = pysam.utils.PysamDispatcher('samtools', 'version')
jpayne@68: view = pysam.utils.PysamDispatcher('samtools', 'view')
jpayne@68: 
jpayne@68: __all__ = [
jpayne@68:     'addreplacerg', 'ampliconclip', 'ampliconstats',
jpayne@68:     'bam2fq', 'bamshuf', 'bedcov', 'calmd', 'cat',
jpayne@68:     'collate', 'consensus', 'coverage', 'cram_size',
jpayne@68:     'depad', 'depth', 'dict', 'faidx', 'fasta',
jpayne@68:     'fastq', 'fixmate', 'flags', 'flagstat', 'fqidx',
jpayne@68:     'fqimport', 'head', 'idxstats', 'index',
jpayne@68:     'markdup', 'merge', 'mpileup', 'pad2unpad',
jpayne@68:     'phase', 'quickcheck', 'reference', 'reheader',
jpayne@68:     'reset', 'rmdup', 'samples', 'sort', 'split',
jpayne@68:     'stats', 'targetcut', 'tview', 'version', 'view',
jpayne@68: ]