jpayne@68: package fileIO;
jpayne@68: 
jpayne@68: import java.io.File;
jpayne@68: 
jpayne@68: 
jpayne@68: public class CompressFiles {
jpayne@68: 	
jpayne@68: 	
jpayne@68: 	public static void main(String[] args){
jpayne@68: 		for(String s : args){
jpayne@68: 			if(s.equalsIgnoreCase("zip")){
jpayne@68: 				zip=true;
jpayne@68: 				gzip=false;
jpayne@68: 			}else if(s.equalsIgnoreCase("gzip") || s.equalsIgnoreCase("gz")){
jpayne@68: 				zip=false;
jpayne@68: 				gzip=true;
jpayne@68: 			}else{
jpayne@68: 				compressFiles(s);
jpayne@68: 			}
jpayne@68: 		}
jpayne@68: 	}
jpayne@68: 	
jpayne@68: 	
jpayne@68: 	public static void compressFiles(String path){
jpayne@68: 		File f=new File(path);
jpayne@68: 		compressFiles(f);
jpayne@68: 	}
jpayne@68: 	
jpayne@68: 	public static void compressFiles(File path){
jpayne@68: 		
jpayne@68: 		if(path.isDirectory()){
jpayne@68: 			File[] array=path.listFiles();
jpayne@68: 			for(File f : array){compressFiles(f);}
jpayne@68: 		}else{
jpayne@68: 			compress(path);
jpayne@68: 		}
jpayne@68: 		
jpayne@68: 	}
jpayne@68: 	
jpayne@68: 	public static void compress(File in){
jpayne@68: 		assert(in.exists());
jpayne@68: 		assert(in.isFile());
jpayne@68: 		String abs=in.getAbsolutePath();
jpayne@68: //		System.out.println("Considering "+abs);
jpayne@68: 		if(abs.endsWith(".gz") || abs.endsWith(".zip") || abs.endsWith(".bz2")){return;}
jpayne@68: 		
jpayne@68: //		if(!abs.contains("custom_summary_") || !abs.endsWith("Gene_build36.txt")){return;} //TODO ***TEMPORARY***
jpayne@68: 		System.err.println(abs);
jpayne@68: //		if(!abs.endsWith(".gvla")){return;} //TODO ***TEMPORARY***
jpayne@68: //		if(!abs.endsWith(".gvla") ||
jpayne@68: //				!(abs.contains("seqGene") || abs.contains("refGene") || abs.contains("unionGene"))){return;} //TODO ***TEMPORARY***
jpayne@68: 		if(abs.toLowerCase().contains("familytree")){return;} //TODO ***TEMPORARY***
jpayne@68: 		
jpayne@68: 		if(PRINT_7Z_BATCH){
jpayne@68: 			//-mx=4 is fast; -mx=5 or 6 is slow; 7+ is very slow.
jpayne@68: //			System.out.println("C:"+Data.SLASH+"\"Program Files\""+Data.SLASH+"7-Zip"+Data.SLASH+"7z a -mx=4 "+abs+".zip "+abs);
jpayne@68: 			System.out.println("C:\\\"Program Files\"\\7-Zip\\7z a -mx=4 "+abs+".gz "+abs);
jpayne@68: 		}else{
jpayne@68: 			System.out.println("Compressing "+abs+" to "+(zip ? "zip" : "gz"));
jpayne@68: 			ReadWrite.copyFile(abs, abs+(zip ? ".zip" : ".gz"));
jpayne@68: 		}
jpayne@68: 		
jpayne@68: 	}
jpayne@68: 	
jpayne@68: 	
jpayne@68: 	public static boolean zip=true;
jpayne@68: 	public static boolean gzip=!zip;
jpayne@68: 	
jpayne@68: 	public static boolean PRINT_7Z_BATCH=true;
jpayne@68: 	
jpayne@68: }