jpayne@68: package fileIO;
jpayne@68: 
jpayne@68: import java.io.File;
jpayne@68: 
jpayne@68: 
jpayne@68: public class CopyFiles {
jpayne@68: 	
jpayne@68: 	
jpayne@68: 	public static void main(String[] args){
jpayne@68: 		for(String s : args){
jpayne@68: 			renameFiles(s);
jpayne@68: 		}
jpayne@68: 	}
jpayne@68: 	
jpayne@68: 	
jpayne@68: 	public static void renameFiles(String path){
jpayne@68: 		File f=new File(path);
jpayne@68: 		renameFiles(f);
jpayne@68: 	}
jpayne@68: 	
jpayne@68: 	public static void renameFiles(File path){
jpayne@68: 		
jpayne@68: 		if(path.isDirectory()){
jpayne@68: 			File[] array=path.listFiles();
jpayne@68: 			for(File f : array){renameFiles(f);}
jpayne@68: 		}else{
jpayne@68: 			rename(path);
jpayne@68: 		}
jpayne@68: 		
jpayne@68: 	}
jpayne@68: 	
jpayne@68: 	public static void rename(File in){
jpayne@68: 		assert(in.exists());
jpayne@68: 		assert(in.isFile());
jpayne@68: 		String abs=in.getAbsolutePath();
jpayne@68: 		
jpayne@68: 		
jpayne@68: 		int dot=abs.lastIndexOf('.');
jpayne@68: 		int slash=abs.lastIndexOf('/');
jpayne@68: 		
jpayne@68: //		String[] split=Person.parsePath(abs.substring(0, slash));
jpayne@68: //		String name=split[0];
jpayne@68: //		String out=abs.substring(0, dot)+"_"+name+".txt";
jpayne@68: 		
jpayne@68: 		
jpayne@68: 		
jpayne@68: 		String fname=abs.substring(slash+1);
jpayne@68: 		
jpayne@68: //		System.out.println(fname);
jpayne@68: 		
jpayne@68: 		
jpayne@68: 		if(fname.startsWith("chr") && fname.endsWith(".txt")){
jpayne@68: 			
jpayne@68: 			String out=abs.replace(".txt", ".flow");
jpayne@68: 			assert(!out.equals(abs)) : out+", "+abs;
jpayne@68: 			
jpayne@68: 			System.out.println("Renaming "+abs+" to "+out);
jpayne@68: 			ReadWrite.copyFile(abs, out);
jpayne@68: 		}
jpayne@68: 	}
jpayne@68: 	
jpayne@68: }