jpayne@68: The readqc standalone pipeline;
jpayne@68: The filter standalone pipeline;
jpayne@68: 
jpayne@68: ex data:
jpayne@68: 12248.8.247376.CAGAGTG-ACACTCT.fastq.gz
jpayne@68: 
jpayne@68: ex run syntax:
jpayne@68: % time filter.py -o OUTDIR -f FASTQ.gz --prod-type RNA --skip-blast
jpayne@68: % readqc.py -o OUTDIR -f FASTQ.gz --skip-blast -html
jpayne@68: 
jpayne@68: 
jpayne@68: 
jpayne@68: