jpayne@68: '\" t
jpayne@68: .\"     Title: mash
jpayne@68: .\"    Author: [see the "AUTHOR(S)" section]
jpayne@68: .\" Generator: Asciidoctor 2.0.10
jpayne@68: .\"      Date: 2019-12-13
jpayne@68: .\"    Manual: \ \&
jpayne@68: .\"    Source: \ \&
jpayne@68: .\"  Language: English
jpayne@68: .\"
jpayne@68: .TH "MASH" "1" "2019-12-13" "\ \&" "\ \&"
jpayne@68: .ie \n(.g .ds Aq \(aq
jpayne@68: .el       .ds Aq '
jpayne@68: .ss \n[.ss] 0
jpayne@68: .nh
jpayne@68: .ad l
jpayne@68: .de URL
jpayne@68: \fI\\$2\fP <\\$1>\\$3
jpayne@68: ..
jpayne@68: .als MTO URL
jpayne@68: .if \n[.g] \{\
jpayne@68: .  mso www.tmac
jpayne@68: .  am URL
jpayne@68: .    ad l
jpayne@68: .  .
jpayne@68: .  am MTO
jpayne@68: .    ad l
jpayne@68: .  .
jpayne@68: .  LINKSTYLE blue R < >
jpayne@68: .\}
jpayne@68: .SH "NAME"
jpayne@68: mash \- fast genome and metagenome distance estimation using MinHash
jpayne@68: .SH "SYNOPSIS"
jpayne@68: .sp
jpayne@68: \fBmash\fP <command> [options] [arguments ...]
jpayne@68: .SH "DESCRIPTION"
jpayne@68: .sp
jpayne@68: \fBmash\fP is the main executable for the \fBMash\fP software. The actual
jpayne@68: functionality is provided by the subtools (\(aqcommands\(aq):
jpayne@68: .SS "Commands"
jpayne@68: .sp
jpayne@68: \fBbounds\fP
jpayne@68: .RS 4
jpayne@68: Print a table of Mash error bounds.
jpayne@68: .RE
jpayne@68: .sp
jpayne@68: \fBdist\fP
jpayne@68: .RS 4
jpayne@68: Estimate the distance of query sequences to references.
jpayne@68: .RE
jpayne@68: .sp
jpayne@68: \fBinfo\fP
jpayne@68: .RS 4
jpayne@68: Display information about sketch files.
jpayne@68: .RE
jpayne@68: .sp
jpayne@68: \fBpaste\fP
jpayne@68: .RS 4
jpayne@68: Create a single sketch file from multiple sketch files.
jpayne@68: .RE
jpayne@68: .sp
jpayne@68: \fBscreen\fP
jpayne@68: .RS 4
jpayne@68: Determine whether query sequences are within a larger pool of sequences.
jpayne@68: .RE
jpayne@68: .sp
jpayne@68: \fBsketch\fP
jpayne@68: .RS 4
jpayne@68: Create sketches (reduced representations for fast operations).
jpayne@68: .RE
jpayne@68: .sp
jpayne@68: \fBtriangle\fP
jpayne@68: .RS 4
jpayne@68: Estimate a lower\-triangular distance matrix.
jpayne@68: .RE
jpayne@68: .SH "SEE ALSO"
jpayne@68: .sp
jpayne@68: mash\-dist(1), mash\-info(1), mash\-paste(1), mash\-screen(1), mash\-sketch(1), mash\-triangle(1)