jpayne@69: jpayne@69: Run SNP Pipeline analysis on isolates using one or more references. jpayne@69: jpayne@69: nextflow jpayne@69: micromamba jpayne@69: jpayne@69: nextflow -version jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69:

jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69:

jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: jpayne@69: This tool takes query assemblies and reference assemblies and calculates the pairwise distance between each query/reference combination. If no reference is provided, all queries are compared to all other queries. jpayne@69: jpayne@69: jpayne@69: 10.XXXX/placeholder.doi jpayne@69: @article{example2024,title={CFSAN SNP Pipeline 2 (CSP2): a pipeline for fast and accurate SNP distance estimation from bacterial genome assemblies.},author={Doe, John and Smith, Jane},journal={Submitted},year={2024}} jpayne@69: jpayne@69: jpayne@69: