# HG changeset patch
# User rliterman
# Date 1733246618 18000
# Node ID 0d775868ee62c3e9473baede3b13673cb4f88991
# Parent  074a2dc26b691dbb9921cc128eb532697560ab1c
"planemo upload"

diff -r 074a2dc26b69 -r 0d775868ee62 CSP2/nextflow.config
--- a/CSP2/nextflow.config	Tue Dec 03 11:09:33 2024 -0500
+++ b/CSP2/nextflow.config	Tue Dec 03 12:23:38 2024 -0500
@@ -12,6 +12,17 @@
 // Import profile settings
 includeConfig "conf/profiles.config"
 
+// CPU/memory settings
+process {
+    withLabel: 'mummerMem' {
+        cpus = 1
+        memory = '4 GB'
+    }
+    withLabel: 'skesaMem' {
+        memory = '12 GB'
+    }
+}
+
 // Global default params
 params {
 
diff -r 074a2dc26b69 -r 0d775868ee62 CSP2/subworkflows/alignData/main.nf
--- a/CSP2/subworkflows/alignData/main.nf	Tue Dec 03 11:09:33 2024 -0500
+++ b/CSP2/subworkflows/alignData/main.nf	Tue Dec 03 12:23:38 2024 -0500
@@ -66,8 +66,7 @@
 
 process runMUMmer{
 
-    cpus = 1
-    memory '4 GB'
+    label 'mummerMem'
 
     input:
     tuple val(query_name),val(query_fasta),val(ref_name),val(ref_fasta)
diff -r 074a2dc26b69 -r 0d775868ee62 CSP2/subworkflows/fetchData/main.nf
--- a/CSP2/subworkflows/fetchData/main.nf	Tue Dec 03 11:09:33 2024 -0500
+++ b/CSP2/subworkflows/fetchData/main.nf	Tue Dec 03 12:23:38 2024 -0500
@@ -493,8 +493,10 @@
     assembled_data = assembly_output.map{it->tuple(it[0],it[3])}
 }
 process skesaAssemble{
-    memory '12 GB' // Add readcount/memory check?
+    label 'skesaMem'
 
+    cpus = skesa_cpus
+    
     input:
     tuple val(sample_name),val(read_type),val(read_location)