# HG changeset patch
# User rliterman
# Date 1733357318 18000
# Node ID 1117def5cd243b5bb1964fc54549de663832d2e6
# Parent  1fe21a8717d4fd922189b4b19d425dbcd615e733
"planemo upload"

diff -r 1fe21a8717d4 -r 1117def5cd24 CSP2/.github/workflows/build-docker.yml
--- a/CSP2/.github/workflows/build-docker.yml	Wed Dec 04 17:06:15 2024 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,34 +0,0 @@
-name: docker-build
-
-on:
-  release:
-    types: [published]
-
-jobs:
-  docker:
-    runs-on: ubuntu-latest
-    steps:
-      -
-        name: Set up QEMU
-        uses: docker/setup-qemu-action@v3
-      -
-        name: Set up Docker Buildx
-        uses: docker/setup-buildx-action@v3
-      -
-        name: Login to Docker Hub
-        uses: docker/login-action@v3
-        with:
-          username: ${{ secrets.DOCKERHUB_USERNAME }}
-          password: ${{ secrets.DOCKERHUB_TOKEN }}
-      -
-        name: Build and push
-        uses: docker/build-push-action@v6
-        with:
-          file: docker/Dockerfile
-          platforms: linux/amd64
-          target: release
-          build-args: |
-            VERSION=${{ github.ref_name }}
-            CSP2_BRANCH=${{ github.ref_name }}
-          push: true
-          tags: cfsanbiostatistics/csp2:latest,cfsanbiostatistics/csp2:${{ github.ref_name }}
diff -r 1fe21a8717d4 -r 1117def5cd24 CSP2/.gitignore
--- a/CSP2/.gitignore	Wed Dec 04 17:06:15 2024 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,211 +0,0 @@
-# Created by https://www.toptal.com/developers/gitignore/api/python,visualstudiocode,virtualenv
-# Edit at https://www.toptal.com/developers/gitignore?templates=python,visualstudiocode,virtualenv
-
-### Python ###
-# Byte-compiled / optimized / DLL files
-__pycache__/
-*.py[cod]
-*$py.class
-
-# C extensions
-*.so
-
-# Distribution / packaging
-.Python
-build/
-develop-eggs/
-dist/
-downloads/
-eggs/
-.eggs/
-lib/
-lib64/
-parts/
-sdist/
-var/
-wheels/
-share/python-wheels/
-*.egg-info/
-.installed.cfg
-*.egg
-MANIFEST
-
-# PyInstaller
-#  Usually these files are written by a python script from a template
-#  before PyInstaller builds the exe, so as to inject date/other infos into it.
-*.manifest
-*.spec
-
-# Installer logs
-pip-log.txt
-pip-delete-this-directory.txt
-
-# Unit test / coverage reports
-htmlcov/
-.tox/
-.nox/
-.coverage
-.coverage.*
-.cache
-nosetests.xml
-coverage.xml
-*.cover
-*.py,cover
-.hypothesis/
-.pytest_cache/
-cover/
-
-# Translations
-*.mo
-*.pot
-
-# Django stuff:
-*.log
-local_settings.py
-db.sqlite3
-db.sqlite3-journal
-
-# Flask stuff:
-instance/
-.webassets-cache
-
-# Scrapy stuff:
-.scrapy
-
-# Sphinx documentation
-docs/_build/
-
-# PyBuilder
-.pybuilder/
-target/
-
-# Jupyter Notebook
-.ipynb_checkpoints
-
-# IPython
-profile_default/
-ipython_config.py
-
-# pyenv
-#   For a library or package, you might want to ignore these files since the code is
-#   intended to run in multiple environments; otherwise, check them in:
-# .python-version
-
-# pipenv
-#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
-#   However, in case of collaboration, if having platform-specific dependencies or dependencies
-#   having no cross-platform support, pipenv may install dependencies that don't work, or not
-#   install all needed dependencies.
-#Pipfile.lock
-
-# poetry
-#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
-#   This is especially recommended for binary packages to ensure reproducibility, and is more
-#   commonly ignored for libraries.
-#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
-#poetry.lock
-
-# pdm
-#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
-#pdm.lock
-#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
-#   in version control.
-#   https://pdm.fming.dev/#use-with-ide
-.pdm.toml
-
-# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
-__pypackages__/
-
-# Celery stuff
-celerybeat-schedule
-celerybeat.pid
-
-# SageMath parsed files
-*.sage.py
-
-# Environments
-.env
-.venv
-env/
-venv/
-ENV/
-env.bak/
-venv.bak/
-
-# Spyder project settings
-.spyderproject
-.spyproject
-
-# Rope project settings
-.ropeproject
-
-# mkdocs documentation
-/site
-
-# mypy
-.mypy_cache/
-.dmypy.json
-dmypy.json
-
-# Pyre type checker
-.pyre/
-
-# pytype static type analyzer
-.pytype/
-
-# Cython debug symbols
-cython_debug/
-
-# PyCharm
-#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
-#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
-#  and can be added to the global gitignore or merged into this file.  For a more nuclear
-#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
-#.idea/
-
-### Python Patch ###
-# Poetry local configuration file - https://python-poetry.org/docs/configuration/#local-configuration
-poetry.toml
-
-# ruff
-.ruff_cache/
-
-# LSP config files
-pyrightconfig.json
-
-### VirtualEnv ###
-# Virtualenv
-# http://iamzed.com/2009/05/07/a-primer-on-virtualenv/
-[Bb]in
-[Ii]nclude
-[Ll]ib
-[Ll]ib64
-[Ll]ocal
-[Ss]cripts
-pyvenv.cfg
-pip-selfcheck.json
-
-### VisualStudioCode ###
-.vscode/*
-!.vscode/settings.json
-!.vscode/tasks.json
-!.vscode/launch.json
-!.vscode/extensions.json
-!.vscode/*.code-snippets
-
-# Local History for Visual Studio Code
-.history/
-
-# Built Visual Studio Code Extensions
-*.vsix
-
-### VisualStudioCode Patch ###
-# Ignore all local history of files
-.history
-.ionide
-
-# End of https://www.toptal.com/developers/gitignore/api/python,visualstudiocode,virtualenv
-
-#Nextflow
-.nextflow*
-work/
\ No newline at end of file