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changeset 0:01431fa12065

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"planemo upload"
author rliterman
date Mon, 02 Dec 2024 10:40:55 -0500
parents
children 9df7494b1398
files CSP2/.github/workflows/build-docker.yml CSP2/.gitignore CSP2/CSP2.nf CSP2/LICENSE CSP2/README.md CSP2/bin/chooseRefs.py CSP2/bin/compileMUMmer.py CSP2/bin/compileSNPResults.py CSP2/bin/fetchReads.py CSP2/bin/processFasta.py CSP2/bin/runSNPPipeline.py CSP2/bin/saveSNPDiffs.py CSP2/bin/screenSNPDiffs.py CSP2/bin/userSNPDiffs.py CSP2/conda/README.md CSP2/conda/environment.yaml CSP2/conf/CSP2.yaml CSP2/conf/profiles.config CSP2/docker/Dockerfile CSP2/docker/Makefile CSP2/img/SNP.jpg CSP2/img/Screen_Run.jpg CSP2/img/Temp_Logo.jpg CSP2/nextflow.config CSP2/subworkflows/alignData/main.nf CSP2/subworkflows/fetchData/main.nf CSP2/subworkflows/refchooser/main.nf CSP2/subworkflows/snpdiffs/main.nf csp2-screen.xml test-data/Isolate_Data.tsv test-data/Screening_Results.tsv test-data/assemblies/Sample_A.fasta test-data/assemblies/Sample_B.fasta test-data/assemblies/Sample_C.fasta test-data/assemblies/Sample_D.fasta test-data/assemblies/Sample_E.fasta test-data/assemblies/Sample_F.fasta test-data/assemblies/Sample_G.fasta