Mercurial > repos > rliterman > csp2

changeset 22:3d631131486f

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"planemo upload"
author rliterman
date Tue, 03 Dec 2024 14:42:19 -0500
parents 070fb0b64d4d
children 9916f9bec7fd
files CSP2/nextflow.config CSP2/subworkflows/fetchData/main.nf
diffstat 2 files changed, 6 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/CSP2/nextflow.config	Tue Dec 03 14:18:54 2024 -0500
+++ b/CSP2/nextflow.config	Tue Dec 03 14:42:19 2024 -0500
@@ -15,8 +15,12 @@
 // CPU/memory settings
 process {
     withLabel: 'mummerMem' {
-        cpus = 1 
+        cpus = 1
+        memory = '4 GB'
     }
+   // withLabel: 'skesaMem' {
+   //     memory = '12 GB'
+   // }
 }
 
 // Global default params
--- a/CSP2/subworkflows/fetchData/main.nf	Tue Dec 03 14:18:54 2024 -0500
+++ b/CSP2/subworkflows/fetchData/main.nf	Tue Dec 03 14:42:19 2024 -0500
@@ -493,6 +493,7 @@
     assembled_data = assembly_output.map{it->tuple(it[0],it[3])}
 }
 process skesaAssemble{
+    // label 'skesaMem'
 
     cpus = skesa_cpus