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changeset 6:6e0ca63be26f

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"planemo upload"
author rliterman
date Mon, 02 Dec 2024 17:15:31 -0500
parents ec2d1d77d44c
children 89d3f54fc370
files csp2_screen.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/csp2_screen.xml	Mon Dec 02 16:59:34 2024 -0500
+++ b/csp2_screen.xml	Mon Dec 02 17:15:31 2024 -0500
@@ -57,7 +57,7 @@
                 export REF_ID_ARG="";
         fi;
 
-	nextflow run ${__tool_directory__}/CSP2/CSP2.nf -profile csp2_galaxy --runmode screen \$QUERY_FASTA_ARG \$REF_FASTA_ARG \$QUERY_READS_ARG \$REF_READS_ARG \$REF_ID_ARG \$TRIM_ARG --readext $readext --forward $forward --reverse $reverse --ref_readext $readext --ref_forward $forward --ref_reverse $reverse --min_cov $min_cov --min_iden $min_iden --min_len $min_len --ref_edge $ref_edge --query_edge $query_edge --dwin $dwin --wsnps $wsnps --cores 8 --out \$CSP2_DIR/CSP2_Screen_Output > \$CSP2_DIR/CSP2_Screen_Output\.nextflow.log 2>&1;
+			nextflow run ${__tool_directory__}/CSP2/CSP2.nf -profile csp2_galaxy --runmode screen \$QUERY_FASTA_ARG \$REF_FASTA_ARG \$QUERY_READS_ARG \$REF_READS_ARG \$REF_ID_ARG \$TRIM_ARG --readext $readext --forward $forward --reverse $reverse --ref_readext $readext --ref_forward $forward --ref_reverse $reverse --min_cov $min_cov --min_iden $min_iden --min_len $min_len --ref_edge $ref_edge --query_edge $query_edge --dwin $dwin --wsnps $wsnps --cores 8 --out \$CSP2_DIR/CSP2_Screen_Output > \$CSP2_DIR/CSP2_Screen_Output/.nextflow.log 2>&1;
         ]]>
 		</command>
 		<inputs>