Mercurial > repos > rliterman > csp2

changeset 24:75070dbe67b1

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"planemo upload"
author rliterman
date Tue, 03 Dec 2024 15:15:27 -0500
parents 9916f9bec7fd
children 5c609acba34e
files CSP2/nextflow.config CSP2/subworkflows/fetchData/main.nf
diffstat 2 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/CSP2/nextflow.config	Tue Dec 03 14:47:47 2024 -0500
+++ b/CSP2/nextflow.config	Tue Dec 03 15:15:27 2024 -0500
@@ -16,11 +16,11 @@
 process {
     withLabel: 'mummerMem' {
         cpus = 1
-    //    memory = '4 GB'
+        // memory = '4 GB'
     }
-   // withLabel: 'skesaMem' {
-   //     memory = '12 GB'
-   // }
+    // withLabel: 'skesaMem' {
+    //     memory = '12 GB'
+    // }
 }
 
 // Global default params
--- a/CSP2/subworkflows/fetchData/main.nf	Tue Dec 03 14:47:47 2024 -0500
+++ b/CSP2/subworkflows/fetchData/main.nf	Tue Dec 03 15:15:27 2024 -0500
@@ -20,7 +20,7 @@
 userSNPDiffs = file("${projectDir}/bin/userSNPDiffs.py")
 
 // Set SKESA cores to 4 or fewer
-skesa_cpus = (params.cores as Integer) >= 4 ? 4 : (params.cores as Integer)
+skesa_cpus = (params.cores as Integer) >= 4 ? 4 : params.cores as Integer
 
 workflow {
     main: