Mercurial > repos > rliterman > csp2

changeset 13:c3a0820082d1

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"planemo upload"
author rliterman
date Tue, 03 Dec 2024 10:43:25 -0500
parents 00aa43a565d1
children 074a2dc26b69
files CSP2/conf/profiles.config csp_screen.xml
diffstat 2 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/CSP2/conf/profiles.config	Tue Dec 03 10:06:35 2024 -0500
+++ b/CSP2/conf/profiles.config	Tue Dec 03 10:43:25 2024 -0500
@@ -85,7 +85,7 @@
         conda.cacheDir = "${projectDir}/CSP2_env"
         process.conda = "${projectDir}/conf/CSP2.yaml"
         
-        process.clusterOptions = {"-p ondemand-small"}
+        process.queue = "ondemand-small"
 
         executor.$slurm.exitReadTimeout = 120000
 
--- a/csp_screen.xml	Tue Dec 03 10:06:35 2024 -0500
+++ b/csp_screen.xml	Tue Dec 03 10:43:25 2024 -0500
@@ -82,7 +82,7 @@
 		<data name="screening_results" format="tabular" label="Screening Results" from_work_dir="CSP2_Screen_Output/Screening_Results.tsv" />
 		<data name="isolate_data" format="tabular" label="Isolate Data" from_work_dir="CSP2_Screen_Output/Isolate_Data.tsv" />
 		<data name="nextflow_log" format="txt" label="Nextflow Log" from_work_dir="Nextflow_Log.txt" />
-		<data name="CSP2_Params" format="txt" label="Passed params" from_work_dir="CSP2_Screen_Output/Logs/CSP2_Params.txt" />
+		<data name="CSP2_Params" format="txt" label="Passed params" from_work_dir="CSP2_Screen_Output/logs/CSP2_Params.txt" />
 	</outputs>
 	<tests>
 		<test>