| Previous changeset 5:ec2d1d77d44c (2024-12-02) Next changeset 7:89d3f54fc370 (2024-12-02) |
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Commit message:
"planemo upload" |
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modified:
csp2_screen.xml |
| csp2_screen.xml |
| diff -r ec2d1d77d44c -r 6e0ca63be26f csp2_screen.xml |
| csp2_screen.xml |
| --- a/csp2_screen.xml Mon Dec 02 16:59:34 2024 -0500 +++ b/csp2_screen.xml Mon Dec 02 17:15:31 2024 -0500 @@ -57,7 +57,7 @@ export REF_ID_ARG=""; fi; - nextflow run ${__tool_directory__}/CSP2/CSP2.nf -profile csp2_galaxy --runmode screen \$QUERY_FASTA_ARG \$REF_FASTA_ARG \$QUERY_READS_ARG \$REF_READS_ARG \$REF_ID_ARG \$TRIM_ARG --readext $readext --forward $forward --reverse $reverse --ref_readext $readext --ref_forward $forward --ref_reverse $reverse --min_cov $min_cov --min_iden $min_iden --min_len $min_len --ref_edge $ref_edge --query_edge $query_edge --dwin $dwin --wsnps $wsnps --cores 8 --out \$CSP2_DIR/CSP2_Screen_Output > \$CSP2_DIR/CSP2_Screen_Output\.nextflow.log 2>&1; + nextflow run ${__tool_directory__}/CSP2/CSP2.nf -profile csp2_galaxy --runmode screen \$QUERY_FASTA_ARG \$REF_FASTA_ARG \$QUERY_READS_ARG \$REF_READS_ARG \$REF_ID_ARG \$TRIM_ARG --readext $readext --forward $forward --reverse $reverse --ref_readext $readext --ref_forward $forward --ref_reverse $reverse --min_cov $min_cov --min_iden $min_iden --min_len $min_len --ref_edge $ref_edge --query_edge $query_edge --dwin $dwin --wsnps $wsnps --cores 8 --out \$CSP2_DIR/CSP2_Screen_Output > \$CSP2_DIR/CSP2_Screen_Output/.nextflow.log 2>&1; ]]> </command> <inputs> |