| Previous changeset 63:b87f07ac9edc (2024-12-19) Next changeset 65:c2a886313008 (2024-12-19) |
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Commit message:
"planemo upload" |
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modified:
csp2_snp.xml |
| csp2_snp.xml |
| diff -r b87f07ac9edc -r 6f3b67127e44 csp2_snp.xml |
| csp2_snp.xml |
| --- a/csp2_snp.xml Thu Dec 19 14:02:04 2024 -0500 +++ b/csp2_snp.xml Thu Dec 19 14:35:57 2024 -0500 @@ -48,7 +48,7 @@ #for _, $read_file in enumerate($query_reads.list): ln -sf ${read_file} ./queries/${read_file.element_identifier}; #end for - export QUERY_FASTA_ARG="--reads ./queries"; + export QUERY_READS_ARG="--reads ./queries"; #end if #if (str($ref_reads.ref_reads_select) == "none"): @@ -63,7 +63,7 @@ #for _, $read_file in enumerate($ref_reads.list): ln -sf ${read_file} ./references/${read_file.element_identifier}; #end for - export REF_FASTA_ARG="--ref_reads ./references"; + export REF_READS_ARG="--ref_reads ./references"; #end if if [ -n "$trim_name" ] && [ "$trim_name" != "None" ]; then |