| Previous changeset 23:9916f9bec7fd (2024-12-03) Next changeset 25:5c609acba34e (2024-12-03) |
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Commit message:
"planemo upload" |
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modified:
CSP2/nextflow.config CSP2/subworkflows/fetchData/main.nf |
| CSP2/nextflow.config |
| diff -r 9916f9bec7fd -r 75070dbe67b1 CSP2/nextflow.config |
| CSP2/nextflow.config |
| --- a/CSP2/nextflow.config Tue Dec 03 14:47:47 2024 -0500 +++ b/CSP2/nextflow.config Tue Dec 03 15:15:27 2024 -0500 @@ -16,11 +16,11 @@ process { withLabel: 'mummerMem' { cpus = 1 - // memory = '4 GB' + // memory = '4 GB' } - // withLabel: 'skesaMem' { - // memory = '12 GB' - // } + // withLabel: 'skesaMem' { + // memory = '12 GB' + // } } // Global default params |
| CSP2/subworkflows/fetchData/main.nf |
| diff -r 9916f9bec7fd -r 75070dbe67b1 CSP2/subworkflows/fetchData/main.nf |
| CSP2/subworkflows/fetchData/main.nf |
| --- a/CSP2/subworkflows/fetchData/main.nf Tue Dec 03 14:47:47 2024 -0500 +++ b/CSP2/subworkflows/fetchData/main.nf Tue Dec 03 15:15:27 2024 -0500 @@ -20,7 +20,7 @@ userSNPDiffs = file("${projectDir}/bin/userSNPDiffs.py") // Set SKESA cores to 4 or fewer -skesa_cpus = (params.cores as Integer) >= 4 ? 4 : (params.cores as Integer) +skesa_cpus = (params.cores as Integer) >= 4 ? 4 : params.cores as Integer workflow { main: |