| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolrepo.galaxytrakr.org/repos/jpayne/snp_pipeline/merge_vcfs/1.0.1 (this tool) |
| merge_vcfs |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bcftools | 1.9 | package |
| bzip2 | 1.0.6 | package |
| snp-pipeline | 2.0.2 | package |
| tabix | 0.2.5 | package |
| htslib | 1.9 | package |
| python | 3.6.8 | package |
| Additional information about this tool |
export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"
#for $vcf in $vcfs
-n $vcf.element_identifier -f $vcf
#end for
> ./file
&& cat ./file
&& cfsan_snp_pipeline merge_vcfs ./file
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
vcfs: list collection |
attributes: name |
samples/sample1/consensus.vcf samples/sample2/consensus.vcf samples/sample3/consensus.vcf samples/sample4/consensus.vcf name |