Mercurial > repos > estrain > amrfinderplus_db

annotate test-data/test_2/amrfinderplus_results.tsv @ 9:2843b4fe3f70 draft

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planemo upload commit a0e58735030f39779f13905ba2e2f93babfa138e
author galaxytrakr
date Fri, 13 Nov 2026 13:19:33 +0000
parents 3e93d920163b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
1 Name Protein identifier Contig id Start Stop Strand Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description Hierarchy node
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
2 test_2 NA contig_26 6581 8545 + optrA ABC-F type ribosomal protection protein OptrA core AMR AMR PHENICOL/OXAZOLIDINONE FLORFENICOL/OXAZOLIDINONE EXACTX 655 655 100.00 100.00 655 WP_063854496.1 ABC-F type ribosomal protection protein OptrA NA NA optrA