Mercurial > repos > estrain > amrfinderplus_db

annotate test-data/test_2/amrfinderplus_results.tsv @ 6:3e93d920163b draft

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planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
author estrain
date Thu, 12 Mar 2026 20:38:44 +0000
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3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
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1 Name Protein identifier Contig id Start Stop Strand Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description Hierarchy node
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
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diff changeset
2 test_2 NA contig_26 6581 8545 + optrA ABC-F type ribosomal protection protein OptrA core AMR AMR PHENICOL/OXAZOLIDINONE FLORFENICOL/OXAZOLIDINONE EXACTX 655 655 100.00 100.00 655 WP_063854496.1 ABC-F type ribosomal protection protein OptrA NA NA optrA