Mercurial > repos > estrain > amrfinderplus_db

annotate test-data/test_8/amrfinderplus_results.tsv @ 6:3e93d920163b draft

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planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
author estrain
date Thu, 12 Mar 2026 20:38:44 +0000
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3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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1 Protein identifier Contig id Start Stop Strand Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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2 NA contig_26 6581 8545 + optrA ABC-F type ribosomal protection protein OptrA core AMR AMR PHENICOL/OXAZOLIDINONE FLORFENICOL/OXAZOLIDINONE EXACTX 655 655 100.00 100.00 655 WP_063854496.1 ABC-F type ribosomal protection protein OptrA NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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3 IDOBJL_14770 contig_46 2435 3229 - aph(3')-IIIa aminoglycoside O-phosphotransferase APH(3')-IIIa core AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN BLASTP 264 264 100.00 99.62 264 WP_063841495.1 aminoglycoside O-phosphotransferase APH(3')-IIIa NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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4 IDOBJL_14775 contig_46 3322 3864 - sat4 streptothricin N-acetyltransferase Sat4 core AMR AMR STREPTOTHRICIN STREPTOTHRICIN BLASTP 180 180 100.00 99.44 180 WP_063854934.1 streptothricin N-acetyltransferase Sat4 NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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5 IDOBJL_14820 contig_47 3993 5912 - tet(M) tetracycline resistance ribosomal protection protein Tet(M) core AMR AMR TETRACYCLINE TETRACYCLINE BLASTP 639 639 100.00 99.84 639 WP_063856395.1 tetracycline resistance ribosomal protection protein Tet(M) NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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6 IDOBJL_14830 contig_48 199 936 - erm(B) 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) core AMR AMR MACROLIDE MACROLIDE BLASTP 245 245 100.00 99.59 245 WP_063844601.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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7 NA contig_48 4344 4988 + catA type A-7 chloramphenicol O-acetyltransferase core AMR AMR PHENICOL CHLORAMPHENICOL BLASTX 215 215 100.00 96.28 215 WP_063843211.1 type A-7 chloramphenicol O-acetyltransferase NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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8 IDOBJL_14880 contig_50 282 1658 + tet(L) tetracycline efflux MFS transporter Tet(L) core AMR AMR TETRACYCLINE TETRACYCLINE BLASTP 458 458 100.00 99.78 458 WP_063856080.1 tetracycline efflux MFS transporter Tet(L) NA NA