Mercurial > repos > estrain > seqsero2_v1_0_1

comparison seqsero2.xml @ 20:b2b1d018b90d

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Uploaded
author estrain
date Sat, 07 Sep 2019 13:42:11 -0400
parents b43b7ef0df6a
children 55d2ec45737f
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19:e33565b4610c 20:b2b1d018b90d
10 <requirement type="package" version="3.13.1">spades</requirement> 10 <requirement type="package" version="3.13.1">spades</requirement>
11 <requirement type="package" version="2.27.1">bedtools</requirement> 11 <requirement type="package" version="2.27.1">bedtools</requirement>
12 </requirements> 12 </requirements>
13 <command detect_errors="exit_code"><![CDATA[ 13 <command detect_errors="exit_code"><![CDATA[
14 echo "SeqSero 2 v. 1.0.1" ; 14 echo "SeqSero 2 v. 1.0.1" ;
15 cp $__tool_directory__/SalmID.py .;
16 cp $__tool_directory__/invA_mers_dict .;
17 cp $__tool_directory__/rpoB_mers_dict .;
18
15 #if $reads.reads_select == 'history' 19 #if $reads.reads_select == 'history'
16 #set $name = $reads.forward.name.split('.')[0].replace(' ','_') 20 #set $name = $reads.forward.name.split('.')[0].replace(' ','_')
17 #set $forward = $reads.forward 21 #set $forward = $reads.forward
18 #set $reverse = $reads.reverse 22 #set $reverse = $reads.reverse
19 #else 23 #else