Mercurial > repos > estrain > spades_cpu7mem28

annotate write_tsv_script.py @ 0:f69397b32f52 draft

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planemo upload commit 7f003a1dcc0fde7a5c85786dd154fd09836a417b
author estrain
date Fri, 13 Mar 2026 12:21:18 +0000
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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f69397b32f52 planemo upload commit 7f003a1dcc0fde7a5c85786dd154fd09836a417b
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1 #!/usr/bin/env python
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3 import re
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4 import sys
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6 search_str = r"^>(NODE|\S+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*)(.*\$)?"
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8 replace_str = r"\1_\2\t\3\t\4"
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10 cmd = re.compile(search_str)
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12 sys.stdout.write("#name\tlength\tcoverage\n")
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14 for i, line in enumerate(sys.stdin):
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15 if cmd.match(line):
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16 sys.stdout.write(cmd.sub(replace_str, line))