Mercurial > repos > estrain > spades_cpu7mem28
diff write_tsv_script.py @ 0:f69397b32f52 draft
planemo upload commit 7f003a1dcc0fde7a5c85786dd154fd09836a417b
| author | estrain |
|---|---|
| date | Fri, 13 Mar 2026 12:21:18 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/write_tsv_script.py Fri Mar 13 12:21:18 2026 +0000 @@ -0,0 +1,16 @@ +#!/usr/bin/env python + +import re +import sys + +search_str = r"^>(NODE|\S+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*)(.*\$)?" + +replace_str = r"\1_\2\t\3\t\4" + +cmd = re.compile(search_str) + +sys.stdout.write("#name\tlength\tcoverage\n") + +for i, line in enumerate(sys.stdin): + if cmd.match(line): + sys.stdout.write(cmd.sub(replace_str, line))
