diff write_tsv_script.py @ 0:f69397b32f52 draft

planemo upload commit 7f003a1dcc0fde7a5c85786dd154fd09836a417b
author estrain
date Fri, 13 Mar 2026 12:21:18 +0000
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/write_tsv_script.py	Fri Mar 13 12:21:18 2026 +0000
@@ -0,0 +1,16 @@
+#!/usr/bin/env python
+
+import re
+import sys
+
+search_str = r"^>(NODE|\S+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*)(.*\$)?"
+
+replace_str = r"\1_\2\t\3\t\4"
+
+cmd = re.compile(search_str)
+
+sys.stdout.write("#name\tlength\tcoverage\n")
+
+for i, line in enumerate(sys.stdin):
+    if cmd.match(line):
+        sys.stdout.write(cmd.sub(replace_str, line))