Mercurial > repos > estrain > spades_cpu7mem28
view write_tsv_script.py @ 0:f69397b32f52 draft
planemo upload commit 7f003a1dcc0fde7a5c85786dd154fd09836a417b
| author | estrain |
|---|---|
| date | Fri, 13 Mar 2026 12:21:18 +0000 |
| parents | |
| children |
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#!/usr/bin/env python import re import sys search_str = r"^>(NODE|\S+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*)(.*\$)?" replace_str = r"\1_\2\t\3\t\4" cmd = re.compile(search_str) sys.stdout.write("#name\tlength\tcoverage\n") for i, line in enumerate(sys.stdin): if cmd.match(line): sys.stdout.write(cmd.sub(replace_str, line))
