Mercurial > repos > estrain > ss2v102

changeset 6:ffc351049e31

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Uploaded
author estrain
date Thu, 03 Oct 2019 06:17:45 -0400
parents 9f437e887671
children 46b848d28b95
files SeqSero2_package.py
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/SeqSero2_package.py	Wed Oct 02 21:13:17 2019 -0400
+++ b/SeqSero2_package.py	Thu Oct 03 06:17:45 2019 -0400
@@ -1389,7 +1389,7 @@
       for_fq,rev_fq=get_input_files(make_dir,input_file,data_type,dirpath)
       input_file = for_fq #-k will just use forward because not all reads were used
       os.chdir(make_dir)
-      f = open(ex_dir + '/antigens.pickle', 'rb')
+      f = open(dir_path + '/seqsero2_db/antigens.pickle', 'rb')
       lib_dict = pickle.load(f)
       f.close
       input_Ks=get_input_K(input_file,lib_dict,data_type,k_size)