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1 process DUMP_SOFTWARE_VERSIONS {
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2 tag "${params.pipeline} software versions"
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3 label 'process_pico'
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4
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5 // Requires `pyyaml` which does not have a dedicated container but is in the MultiQC container
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6 module (params.enable_module ? "${params.swmodulepath}${params.fs}python${params.fs}3.8.1" : null)
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7 conda (params.enable_conda ? "conda-forge::python=3.9 conda-forge::pyyaml" : null)
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8 container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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9 'https://depot.galaxyproject.org/singularity/mulled-v2-ca258a039fcd88610bc4e297b13703e8be53f5ca:d638c4f85566099ea0c74bc8fddc6f531fe56753-0' :
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10 'quay.io/biocontainers/mulled-v2-ca258a039fcd88610bc4e297b13703e8be53f5ca:d638c4f85566099ea0c74bc8fddc6f531fe56753-0' }"
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11
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12 input:
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13 path versions
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14
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15 output:
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16 path "software_versions.yml" , emit: yml
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17 path "software_versions_mqc.yml", emit: mqc_yml
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18 path "versions.yml" , emit: versions
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19
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20 when:
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21 task.ext.when == null || task.ext.when
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22
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23 script:
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24 def args = task.ext.args ?: ''
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25 template 'dumpsoftwareversions.py'
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26 } |
