Mercurial > repos > jasmine_amir > snrqk2
annotate snrqk2.xml @ 11:d33ca49983e2 tip
"planemo upload commit 44f6e83ae7320cfc7416df426acdb1483b91148a-dirty"
| author | jasmine_amir |
|---|---|
| date | Fri, 10 Jun 2022 15:29:54 -0400 |
| parents | 9dff991da8ac |
| children |
| rev | line source |
|---|---|
| jasmine_amir@2 | 1 <tool id="snrqk2" name="SNRQK2" version="3"> |
| jasmine_amir@1 | 2 <description>Compute SSQuAWK QC metrics within SSQuAWK version 4+ workflow, v2</description> |
| jasmine_amir@0 | 3 <requirements> |
| jasmine_amir@5 | 4 <requirement type="package" version="3.7.12">python</requirement> |
| jasmine_amir@5 | 5 <requirement type="package" version="1.1.5">pandas</requirement> |
| jasmine_amir@0 | 6 </requirements> |
| jasmine_amir@0 | 7 <command detect_errors="exit_code"><![CDATA[ |
| jasmine_amir@0 | 8 bash '$__tool_directory__/snrqk2.sh' $input |
| jasmine_amir@0 | 9 ]]> |
| jasmine_amir@0 | 10 </command> |
| jasmine_amir@0 | 11 <inputs> |
| jasmine_amir@0 | 12 <param name="input" type="data" format="tabular" label="Source file"/> |
| jasmine_amir@0 | 13 </inputs> |
| jasmine_amir@0 | 14 <outputs> |
| jasmine_amir@0 | 15 <data format="tabular" label="snrqk_result" name = "results" from_work_dir="snrqk_result.tsv" /> |
| jasmine_amir@0 | 16 </outputs> |
| jasmine_amir@0 | 17 <tests> |
| jasmine_amir@0 | 18 <test> |
| jasmine_amir@0 | 19 <param name="input" value = "joinSamBow_nc.txt" ftype = "tabular"/> |
| jasmine_amir@0 | 20 <output name="results" file="snrqk_result.tsv" /> |
| jasmine_amir@0 | 21 </test> |
| jasmine_amir@0 | 22 </tests> |
| jasmine_amir@0 | 23 <help> "This tool computes QC metrics within the SSQuAWK version 4+ workflow." |
| jasmine_amir@0 | 24 </help> |
| jasmine_amir@0 | 25 <citations> |
| jasmine_amir@0 | 26 <citation type="bibtex"> |
| jasmine_amir@0 | 27 @misc{SSQuAWK, |
| jasmine_amir@0 | 28 title={SSQuAWK}, url={https://www.protocols.io/view/wastewater-qc-workflow-in-galaxytrakr-ssquawk3-kxygxzk5dv8j/v5}}, |
| jasmine_amir@0 | 29 </citation> |
| jasmine_amir@0 | 30 </citations> |
| jasmine_amir@0 | 31 </tool> |