--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/snrqk2.xml	Thu Jun 09 19:29:02 2022 -0400
@@ -0,0 +1,31 @@
+<tool id="snrqk2" name="SNRQK2" version="2">
+  <description>Compute SSQuAWK QC metrics within SSQuAWK version 4+ workflow</description>
+    <requirements>
+      <requirement type="package" version="3.7.12">python</requirement>
+      <requirement type="package" version="1.1.5">pandas</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+	   bash '$__tool_directory__/snrqk2.sh' $input
+]]>
+  </command>
+  <inputs>
+    <param name="input" type="data" format="tabular" label="Source file"/>
+  </inputs>
+  <outputs>
+    <data format="tabular" label="snrqk_result" name = "results" from_work_dir="snrqk_result.tsv" />
+  </outputs>
+      <tests>
+        <test>
+                <param name="input" value = "joinSamBow_nc.txt" ftype = "tabular"/>
+                <output name="results" file="snrqk_result.tsv" />
+       </test>
+    </tests>
+  <help> "This tool computes QC metrics within the SSQuAWK version 4+ workflow."
+  </help>
+    <citations>
+       <citation type="bibtex">
+        @misc{SSQuAWK,
+        title={SSQuAWK}, url={https://www.protocols.io/view/wastewater-qc-workflow-in-galaxytrakr-ssquawk3-kxygxzk5dv8j/v5}},
+       </citation>
+    </citations>
+</tool>