Mercurial > repos > jpayne > bam_dealer

changeset 2:628a56494663

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planemo upload commit b'f16e028df365af5bc6b4b441152d278a55e40ffe\n'
author jpayne
date Wed, 06 Dec 2017 13:55:05 -0500
parents bd0524e92afd
children b7bbe08d50df
files paired_bam_dealer.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/paired_bam_dealer.xml	Wed Dec 06 13:16:24 2017 -0500
+++ b/paired_bam_dealer.xml	Wed Dec 06 13:55:05 2017 -0500
@@ -1,8 +1,8 @@
 <tool id="paired_bam_dealer" name="Deal out" version="0.1.0">
 	<description>paired-end reads by alignment or non-alignment to a reference</description>
     <requirements>
-    	<requirement type="package" version="1.5">samtools</requirement>
-    	<requirement type="package" version="2.26">bedtools</requirement>
+    	<requirement type="binary" version="1.5">samtools</requirement>
+    	<requirement type="binary" version="2.26">bedtools</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         bamToFastq -i <(samtools sort -n <(samtools view -u -f 1 -F 12 $input_bam  ))