Mercurial > repos > jpayne > bioproject_to_srr_2

changeset 10:ccec96a537b7

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planemo upload for repository https://toolrepo.galaxytrakr.org/view/jpayne/bioproject_to_srr_2/556cac4fb538
author jpayne
date Mon, 06 May 2024 00:12:39 -0400
parents f9f1d0a0599a
children 7fd0ef5842e7
files bio2srr.py
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/bio2srr.py	Sun May 05 23:58:19 2024 -0400
+++ b/bio2srr.py	Mon May 06 00:12:39 2024 -0400
@@ -89,7 +89,7 @@
             for field, value in replyy.get("result", {}).items():
                 if "uids" not in field:
                     yield bioproject, field, value["sampledata"] # this is XML, deleriously
-                    sleep(0.1)
+                    sleep(1)
 
 
 biosample_example = """
@@ -156,7 +156,7 @@
     response.raise_for_status()
     reply = response.json()
     for ids in batched(reply.get("linksets", [{}])[0].get("linksetdbs", [{}])[0].get("links", []), 200):
-        sleep(0.1)
+        sleep(0.3)
         response = requests.get(esummary, params=dict(id=','.join(ids), db="sra", format="json"))
         response.raise_for_status()
         replyy = response.json()