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comparison test-data/test/resistance/UCLA_1626_resfinder/ResFinder_results_tab.txt @ 0:91bc7378c1c5 draft

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planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
author jpayne
date Mon, 11 Aug 2025 15:37:26 +0000
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-1:000000000000 0:91bc7378c1c5
1 Resistance gene Identity Alignment Length/Gene Length Coverage Position in reference Contig Position in contig Phenotype Accession no.
2 blaOXA-193 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam CP013032
3 blaOXA-61 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid AY587956
4 blaOXA-489 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam CP013733
5 blaOXA-453 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam KR061507
6 blaOXA-452 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam KR061505
7 blaOXA-451 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam KR061504
8 blaOXA-450 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam KR061502
9 tet(O) 100.00 1920/1920 100.0 1..1920 Contig_1_168.009_Circ [topology=circular] 27131..29050 Doxycycline, Tetracycline, Minocycline M18896