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view test-data/test/resistance/UCLA_1626_resfinder/ResFinder_results_tab.txt @ 0:91bc7378c1c5 draft

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planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
author jpayne
date Mon, 11 Aug 2025 15:37:26 +0000
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Resistance gene	Identity	Alignment Length/Gene Length	Coverage	Position in reference	Contig	Position in contig	Phenotype	Accession no.
blaOXA-193	99.87	774/774	100.0	1..774	Contig_17_116.474	33449..34222	Unknown Beta-lactam	CP013032
blaOXA-61	99.87	774/774	100.0	1..774	Contig_17_116.474	33449..34222	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid	AY587956
blaOXA-489	99.87	774/774	100.0	1..774	Contig_17_116.474	33449..34222	Unknown Beta-lactam	CP013733
blaOXA-453	99.87	774/774	100.0	1..774	Contig_17_116.474	33449..34222	Unknown Beta-lactam	KR061507
blaOXA-452	99.87	774/774	100.0	1..774	Contig_17_116.474	33449..34222	Unknown Beta-lactam	KR061505
blaOXA-451	99.87	774/774	100.0	1..774	Contig_17_116.474	33449..34222	Unknown Beta-lactam	KR061504
blaOXA-450	99.87	774/774	100.0	1..774	Contig_17_116.474	33449..34222	Unknown Beta-lactam	KR061502
tet(O)	100.00	1920/1920	100.0	1..1920	Contig_1_168.009_Circ [topology=circular]	27131..29050	Doxycycline, Tetracycline, Minocycline	M18896