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comparison test-data/test/taxonomy/salmonella/SeqSero_result/SeqSero_log.txt @ 0:91bc7378c1c5 draft

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planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
author jpayne
date Mon, 11 Aug 2025 15:37:26 +0000
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comparison
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-1:000000000000 0:91bc7378c1c5
1 O_scores:
2 O-7_wzy__1080 68.3111954459203
3
4 H_scores:
5 fljB_1,2_Salmonella.enterica_Stanley_AY353267_1__1521 41.33779264214047
6 fljB_1,2_Saintpaulstr_AYDS01000021_1__1511 43.36700336700336
7 fljB_1,2_Heidelbergstr_AMMX01000009_1__1511 43.16498316498317
8 fljB_1,2_Salmonella.enterica_Muenchen_AY353269_1__1521 40.802675585284284
9 fljB_1,5_Infantisstr_ASRF01000034_1__1511 48.754208754208754
10 fljB_1,7_Salmonella.enterica_Bredeney_AY353296_1__1521 48.36120401337793
11 fljB_1,2_Typhimuriumstr_AHVA01000007_1__1511 41.54882154882154
12 fljB_1,5_Salmonella.enterica_Thompson_AY353285_1__1521 41.60535117056856
13 fljB_1,2_Salmonella.enterica_Typhimurium_AY353264_1__1521 43.07692307692308
14 fljB_1,7_Pomonastr_AHIA01000072_1__1511 47.54208754208754
15 fljB_1,5_Muensterstr_AOYX01000059_1__1511 44.78114478114478
16 fliC_b_Salmonella.enterica_Paratyphi.B_AY353358_b,d,j__1488 53.55677154582763
17 fljB_e,n,z15_Braenderupstr_AOZM01000055_e__1496 40.476190476190474
18 fljB_1,5_Bareillystr_AOZP01000315_1__1511 45.925925925925924
19 fljB_1,5_Manhattanstr_CBKW010000016_1__1511 45.925925925925924
20 fljB_1,5_Idikan_SRR1272896__1511 44.64646464646464
21 fljB_1,2_Saintpaulstr_AOXF01000050_1__1511 47.003367003367
22 fljB_1,2_Newportstr_AJMO01000050_1__1511 43.36700336700336
23 fliC_y_Bareillystr_ALPN01000010_other.y__1509 41.40256237356709
24 fljB_1,2_Salmonella.enterica_Heidelberg_AY353265_1__1521 40.33444816053512
25 fljB_1,5_Bareilly_CFSAN000189__1511 41.68350168350168
26 fliC_b_Salmonella.enterica_Urbana_No-upload-yet_b,d,j__1488 67.30506155950752
27 fljB_1,5_Salmonella.enterica_Bovismorbificans_AY353283_1__1521 61.1371237458194
28 fljB_e,n,z15_Salmonella.enterica_Brandenburg_AY353323_e__1506 44.45945945945946
29 fliC_b_Salmonella.enterica_Niederoderwitz_AY353360_b,d,j__1488 52.872777017783854
30 fljB_1,5_Panamastr_AOYJ01000008_1__1511 58.85521885521886
31 fljB_e,n,z15_Salmonella.enterica_Uno_AY353325_e__1506 41.21621621621622
32 fliC_b_Salmonella.enterica_I.6,7:b:z33_AY353361_b,d,j__1488 46.306429548563614
33 fljB_1,5_Infantisstr_AFYI01000002_1__1511 54.74747474747475
34 fliC_b_ParatyphiBstr_AOXH01000168_b,d,j__1476 54.41379310344827
35 fljB_e,n,x_Salmonella.enterica_Bessi_AY353317_e__1506 41.68918918918919
36 fljB_e,n,x_Salmonella.enterica_Gatuni_AY353322_e__1506 40.06756756756757
37 fljB_e,n,z15_Salmonella.enterica_Sanktgeorg_AY353326_e__1506 52.77027027027027
38 fliC_y_Pomonastr_AHIA01000046_other.y__1509 40.6608226567768
39 fliC_y_Hartfordstr_ALPO01000014_other.y__1509 40.99797707349966
40 fljB_1,5_from-Infantis-micro-assembly_SRR1106258_1__1521 46.42140468227425
41 fljB_1,5_Javiana_SAMN02902435_1__1511 49.696969696969695
42 fljB_1,5_Muenster_DTU-unknown(tail&head may be fliC due to extract by mapping)_1__1521 45.953177257525084
43 fljB_1,7_Salmonella.enterica_Nola_AY353298_1__1521 41.73913043478261
44
45 Special_scores:
46 gntR-family-regulatory-protein_dt-negative__291 47.54716981132076
47 gntR-family-regulatory-protein_dt-positive__291 47.54716981132076
48 allmers 10.661320094201516
49 uniqmers_I 85.0