Mercurial > repos > jpayne > refchooser

annotate test-data/test/taxonomy/salmonella/SeqSero_result/SeqSero_log.txt @ 0:91bc7378c1c5 draft

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planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
author jpayne
date Mon, 11 Aug 2025 15:37:26 +0000
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1 O_scores:
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2 O-7_wzy__1080 68.3111954459203
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3
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4 H_scores:
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5 fljB_1,2_Salmonella.enterica_Stanley_AY353267_1__1521 41.33779264214047
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6 fljB_1,2_Saintpaulstr_AYDS01000021_1__1511 43.36700336700336
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7 fljB_1,2_Heidelbergstr_AMMX01000009_1__1511 43.16498316498317
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8 fljB_1,2_Salmonella.enterica_Muenchen_AY353269_1__1521 40.802675585284284
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9 fljB_1,5_Infantisstr_ASRF01000034_1__1511 48.754208754208754
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10 fljB_1,7_Salmonella.enterica_Bredeney_AY353296_1__1521 48.36120401337793
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11 fljB_1,2_Typhimuriumstr_AHVA01000007_1__1511 41.54882154882154
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12 fljB_1,5_Salmonella.enterica_Thompson_AY353285_1__1521 41.60535117056856
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13 fljB_1,2_Salmonella.enterica_Typhimurium_AY353264_1__1521 43.07692307692308
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14 fljB_1,7_Pomonastr_AHIA01000072_1__1511 47.54208754208754
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15 fljB_1,5_Muensterstr_AOYX01000059_1__1511 44.78114478114478
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16 fliC_b_Salmonella.enterica_Paratyphi.B_AY353358_b,d,j__1488 53.55677154582763
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17 fljB_e,n,z15_Braenderupstr_AOZM01000055_e__1496 40.476190476190474
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18 fljB_1,5_Bareillystr_AOZP01000315_1__1511 45.925925925925924
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19 fljB_1,5_Manhattanstr_CBKW010000016_1__1511 45.925925925925924
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20 fljB_1,5_Idikan_SRR1272896__1511 44.64646464646464
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21 fljB_1,2_Saintpaulstr_AOXF01000050_1__1511 47.003367003367
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22 fljB_1,2_Newportstr_AJMO01000050_1__1511 43.36700336700336
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23 fliC_y_Bareillystr_ALPN01000010_other.y__1509 41.40256237356709
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24 fljB_1,2_Salmonella.enterica_Heidelberg_AY353265_1__1521 40.33444816053512
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25 fljB_1,5_Bareilly_CFSAN000189__1511 41.68350168350168
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26 fliC_b_Salmonella.enterica_Urbana_No-upload-yet_b,d,j__1488 67.30506155950752
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27 fljB_1,5_Salmonella.enterica_Bovismorbificans_AY353283_1__1521 61.1371237458194
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28 fljB_e,n,z15_Salmonella.enterica_Brandenburg_AY353323_e__1506 44.45945945945946
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29 fliC_b_Salmonella.enterica_Niederoderwitz_AY353360_b,d,j__1488 52.872777017783854
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30 fljB_1,5_Panamastr_AOYJ01000008_1__1511 58.85521885521886
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31 fljB_e,n,z15_Salmonella.enterica_Uno_AY353325_e__1506 41.21621621621622
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32 fliC_b_Salmonella.enterica_I.6,7:b:z33_AY353361_b,d,j__1488 46.306429548563614
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33 fljB_1,5_Infantisstr_AFYI01000002_1__1511 54.74747474747475
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34 fliC_b_ParatyphiBstr_AOXH01000168_b,d,j__1476 54.41379310344827
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35 fljB_e,n,x_Salmonella.enterica_Bessi_AY353317_e__1506 41.68918918918919
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36 fljB_e,n,x_Salmonella.enterica_Gatuni_AY353322_e__1506 40.06756756756757
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37 fljB_e,n,z15_Salmonella.enterica_Sanktgeorg_AY353326_e__1506 52.77027027027027
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38 fliC_y_Pomonastr_AHIA01000046_other.y__1509 40.6608226567768
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39 fliC_y_Hartfordstr_ALPO01000014_other.y__1509 40.99797707349966
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40 fljB_1,5_from-Infantis-micro-assembly_SRR1106258_1__1521 46.42140468227425
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41 fljB_1,5_Javiana_SAMN02902435_1__1511 49.696969696969695
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42 fljB_1,5_Muenster_DTU-unknown(tail&head may be fliC due to extract by mapping)_1__1521 45.953177257525084
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43 fljB_1,7_Salmonella.enterica_Nola_AY353298_1__1521 41.73913043478261
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44
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45 Special_scores:
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46 gntR-family-regulatory-protein_dt-negative__291 47.54716981132076
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47 gntR-family-regulatory-protein_dt-positive__291 47.54716981132076
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48 allmers 10.661320094201516
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49 uniqmers_I 85.0