annotate job_conf.yml @ 0:225680ef4cc1 draft

planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
author jpayne
date Fri, 15 Aug 2025 19:51:19 +0000
parents
children b747b2c8fdb6
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
1 runners:
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
2 local:
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
3 load: galaxy.jobs.runners.local:LocalJobRunner
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
4 workers: 16
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
5
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
6 # handling:
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
7 # processes:
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
8 # handler0:
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
9
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
10 execution:
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
11 default: local
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
12 environments:
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
13 local:
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
14 runner: local
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
15 docker_local:
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
16 runner: local
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
17 docker_enabled: true
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
18 # container: "auto"
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
19 docker_volumes: $defaults
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
20 # docker_set_user: null
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
21 docker_run_extra_arguments: "--entrypoint ''"
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
22 docker_set_user: root
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
23
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
24 tools:
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
25 - id: seqsero2
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
26 # handler: handler0
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
27 environment: docker_local
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
28
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
29 limits:
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
30 -
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
31 # Amount of time a job can run (in any environment) before it
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
32 # will be terminated by Galaxy.
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
33 type: walltime
225680ef4cc1 planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
jpayne
parents:
diff changeset
34 value: '01:00:00'