Mercurial > repos > jpayne > seqsero_v2

comparison SeqSero2/setup.py @ 17:03f7b358d57f

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author jpayne
date Tue, 25 Mar 2025 23:22:38 -0400
parents b82e5f3c9187
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16:3b6d5b60968f 17:03f7b358d57f
1 import os, sys
2 from distutils.core import setup
3 from setuptools import find_packages
1 4
2 from distutils.core import setup 5 def readme():
6 with open('README.md') as f:
7 return f.read()
3 8
4 setup( 9 setup(name='SeqSero2',
5 name = "seqsero2", 10 version=open("version.py").readlines()[-1].split()[-1].strip("\"'"),
6 version = "2.0", 11 description='Salmonella serotyping',
7 author = "DengLab", 12 long_description=readme(),
8 author_email = "seqsero@gmail.com", 13 classifiers=[
9 description = ("Serotyping for Salmonella."), 14 'Development Status :: 3 - Alpha',
10 license = "GPL-2.0", 15 'License :: OSI Approved :: GNU General Public License v2 (GPLv2)',
11 keywords = "salmonella", 16 'Programming Language :: Python :: 3',
12 url = "https://github.com/CFSAN-Biostatistics/SeqSero2", 17 'Topic :: Text Processing :: Linguistic',
13 packages=['seqsero2'], 18 ],
14 scripts=['scripts/SeqSero2.py'], 19 keywords='Salmonella serotyping bioinformatics WGS',
15 entry_points={ 20 url='https://github.com/denglab/SeqSero2/',
16 'console_scripts': ['SeqSero2 = seqsero2.SeqSero2:main'] 21 author='Shaokang Zhang, Hendrik C Den-Bakker and Xiangyu Deng',
17 }, 22 author_email='zskzsk@uga.edu, Hendrik.DenBakker@uga.edu, xdeng@uga.edu',
18 package_dir = {'seqsero': 'scripts'} 23 license='GPLv2',
24 scripts=["bin/deinterleave_fastq.sh","bin/Initial_Conditions.py","bin/SeqSero2_package.py","bin/SeqSero2_update_kmer_database.py"],
25 packages=[""],
26 include_package_data = True,
27 install_requires=['biopython==1.73'],
28 data_files=[("seqsero2_db",["seqsero2_db/antigens.pickle","seqsero2_db/H_and_O_and_specific_genes.fasta","seqsero2_db/invA_mers_dict","seqsero2_db/special.pickle"])],
29 zip_safe=False,
19 ) 30 )